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Conserved domains on  [gi|157820695|ref|NP_001103119|]
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large ribosomal subunit protein mL63 [Rattus norvegicus]

Protein Classification

MRP-63 domain-containing protein( domain architecture ID 10633175)

MRP-63 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MRP-63 pfam14978
Mitochondrial ribosome protein 63; This family of proteins is present in the intact 55S ...
 13-101 5.18e-45

Mitochondrial ribosome protein 63; This family of proteins is present in the intact 55S subunit of the mitochondrial ribosome. It is not known if it belongs to the 28S or to the 39S subunit.


:

Pssm-ID: 434363  Cd Length: 90  Bit Score: 140.09  E-value: 5.18e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820695   13 PGRQWIGKHRRPRTVSFQAKENMIRRLEVEAENHYWLSMPYMTAEQEYGHAAERRAQ-AFEAIKAAATSKFPKHRYIADQ 91
Cdd:pfam14978   1 PGKQWIGKHRRVRPVSLQMKRNLIRRLEIEEENMYWLSRPYLTKEQESGHAKELRKQeKWEKIKDEQRAKFPPHVTIADR 80

                          90
                  ....*....|
gi 157820695   92 LDHLNISKKW 101
Cdd:pfam14978  81 LDHLNVTKKW 90
 
Name Accession Description Interval E-value
MRP-63 pfam14978
Mitochondrial ribosome protein 63; This family of proteins is present in the intact 55S ...
 13-101 5.18e-45

Mitochondrial ribosome protein 63; This family of proteins is present in the intact 55S subunit of the mitochondrial ribosome. It is not known if it belongs to the 28S or to the 39S subunit.


Pssm-ID: 434363  Cd Length: 90  Bit Score: 140.09  E-value: 5.18e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820695   13 PGRQWIGKHRRPRTVSFQAKENMIRRLEVEAENHYWLSMPYMTAEQEYGHAAERRAQ-AFEAIKAAATSKFPKHRYIADQ 91
Cdd:pfam14978   1 PGKQWIGKHRRVRPVSLQMKRNLIRRLEIEEENMYWLSRPYLTKEQESGHAKELRKQeKWEKIKDEQRAKFPPHVTIADR 80

                          90
                  ....*....|
gi 157820695   92 LDHLNISKKW 101
Cdd:pfam14978  81 LDHLNVTKKW 90
 
Name Accession Description Interval E-value
MRP-63 pfam14978
Mitochondrial ribosome protein 63; This family of proteins is present in the intact 55S ...
 13-101 5.18e-45

Mitochondrial ribosome protein 63; This family of proteins is present in the intact 55S subunit of the mitochondrial ribosome. It is not known if it belongs to the 28S or to the 39S subunit.


Pssm-ID: 434363  Cd Length: 90  Bit Score: 140.09  E-value: 5.18e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820695   13 PGRQWIGKHRRPRTVSFQAKENMIRRLEVEAENHYWLSMPYMTAEQEYGHAAERRAQ-AFEAIKAAATSKFPKHRYIADQ 91
Cdd:pfam14978   1 PGKQWIGKHRRVRPVSLQMKRNLIRRLEIEEENMYWLSRPYLTKEQESGHAKELRKQeKWEKIKDEQRAKFPPHVTIADR 80

                          90
                  ....*....|
gi 157820695   92 LDHLNISKKW 101
Cdd:pfam14978  81 LDHLNVTKKW 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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