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Conserved domains on  [gi|189011608|ref|NP_001120999|]
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YEATS domain-containing protein 4 [Rattus norvegicus]

Protein Classification

YEATS domain-containing protein( domain architecture ID 13014308)

YEATS (Yaf9, ENL, AF9, Taf14, and Sas5) domain-containing protein may act as a reader of the chromatin state and may stimulate transcriptional activity through preferential interactions with crotonylated lysines on histones; similar to Homo sapiens YEATS domain-containing protein 4

CATH:  2.60.40.1970
Gene Ontology:  GO:0006355
PubMed:  19234524|27661789|28300602|35041380
SCOP:  4007347

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YEATS_GAS41_like cd16909
YEATS domain found in YEATS domain-containing protein 4 and similar proteins; glioma amplified ...
 19-155 2.67e-97

YEATS domain found in YEATS domain-containing protein 4 and similar proteins; glioma amplified sequence 41 (GAS41, also known as, YEATS domain-containing protein 4, NuMA-binding protein 1 ) is a YEATS domain family protein that is amplified and acts as an oncogene in human glioma. GAS41 is a YEATS domain family protein and has been shown to interact with the general transcription factor TFIIF via the YEATS domain. DNA regulation by chromatin thru histone post-translational modification and other mechanism involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state, and stimulate transcriptional activity, thru preferential interactions with crotonylated lysines on histones. The YEATS family is named for several family members: 'YNK7', 'ENL', 'AF-9', and 'TFIIF small subunit', and also contains the GAS41 protein.


:

Pssm-ID: 341128  Cd Length: 137  Bit Score: 279.52  E-value: 2.67e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011608  19 VTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPLRVVTKPPYEITETGWGEFEI 98
Cdd:cd16909    1 VTIVKPIVYGNIARYFGKKREEDGHTHQWTVYVKPYFNEDMSTYVKKVQFKLHESYANPLRVVTKPPYEVTETGWGEFEI 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 189011608  99 IIKIFFIDPNERPVTLYHLLKLFQSDTNAMLGKKTVVSEFYDEMIFQDPTAMMQQLL 155
Cdd:cd16909   81 IIKIFFIDPNERPVTLYHLLKLFQSDTNLMLGKKTLVSEFYDELIFQDPTAMMYQLL 137
 
Name Accession Description Interval E-value
YEATS_GAS41_like cd16909
YEATS domain found in YEATS domain-containing protein 4 and similar proteins; glioma amplified ...
 19-155 2.67e-97

YEATS domain found in YEATS domain-containing protein 4 and similar proteins; glioma amplified sequence 41 (GAS41, also known as, YEATS domain-containing protein 4, NuMA-binding protein 1 ) is a YEATS domain family protein that is amplified and acts as an oncogene in human glioma. GAS41 is a YEATS domain family protein and has been shown to interact with the general transcription factor TFIIF via the YEATS domain. DNA regulation by chromatin thru histone post-translational modification and other mechanism involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state, and stimulate transcriptional activity, thru preferential interactions with crotonylated lysines on histones. The YEATS family is named for several family members: 'YNK7', 'ENL', 'AF-9', and 'TFIIF small subunit', and also contains the GAS41 protein.


Pssm-ID: 341128  Cd Length: 137  Bit Score: 279.52  E-value: 2.67e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011608  19 VTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPLRVVTKPPYEITETGWGEFEI 98
Cdd:cd16909    1 VTIVKPIVYGNIARYFGKKREEDGHTHQWTVYVKPYFNEDMSTYVKKVQFKLHESYANPLRVVTKPPYEVTETGWGEFEI 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 189011608  99 IIKIFFIDPNERPVTLYHLLKLFQSDTNAMLGKKTVVSEFYDEMIFQDPTAMMQQLL 155
Cdd:cd16909   81 IIKIFFIDPNERPVTLYHLLKLFQSDTNLMLGKKTLVSEFYDELIFQDPTAMMYQLL 137
YEATS pfam03366
YEATS family; We have named this family the YEATS family, after `YNK7', `ENL', `AF-9', and ...
 43-122 1.23e-34

YEATS family; We have named this family the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit'. This family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity


Pssm-ID: 460899  Cd Length: 80  Bit Score: 118.32  E-value: 1.23e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011608   43 HTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPLRVVTKPPYEITETGWGEFEIIIKIFFIDPNERPVTLYHLLKLFQ 122
Cdd:pfam03366   1 HTHKWTVYVRGLDNEDISYFIKKVVFKLHPSFANPVRVVKKPPFEVTETGWGEFEIRIKIYFKDKDEKPVTIYHDLKLHP 80
TFG3 COG5033
Transcription initiation factor IIF, auxiliary subunit [Transcription];
15-147 2.82e-19

Transcription initiation factor IIF, auxiliary subunit [Transcription];


Pssm-ID: 227366 [Multi-domain]  Cd Length: 225  Bit Score: 82.93  E-value: 2.82e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011608  15 RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPLRVVTKPPYEITETGWG 94
Cdd:COG5033    6 RTERLKTQRVIIPGEAKPLGNEERFPVRHTHIWLVFVRAPGKEDIATIVKKVIFKLHPTFSNPTRTIESPPFEIKETGWG 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 189011608  95 EFEIIIKIFFID-PNERPVTLYHLLKL-------------FQSDTNAMLGKKTVV-SEFYDEMIFQDP 147
Cdd:COG5033   86 EFDIQIKIFFAEkAGEKTIHFYLHFGDepyavdepvdipvNRPDLTSELSKSGEVeSVYKREKRFNEP 153
 
Name Accession Description Interval E-value
YEATS_GAS41_like cd16909
YEATS domain found in YEATS domain-containing protein 4 and similar proteins; glioma amplified ...
 19-155 2.67e-97

YEATS domain found in YEATS domain-containing protein 4 and similar proteins; glioma amplified sequence 41 (GAS41, also known as, YEATS domain-containing protein 4, NuMA-binding protein 1 ) is a YEATS domain family protein that is amplified and acts as an oncogene in human glioma. GAS41 is a YEATS domain family protein and has been shown to interact with the general transcription factor TFIIF via the YEATS domain. DNA regulation by chromatin thru histone post-translational modification and other mechanism involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state, and stimulate transcriptional activity, thru preferential interactions with crotonylated lysines on histones. The YEATS family is named for several family members: 'YNK7', 'ENL', 'AF-9', and 'TFIIF small subunit', and also contains the GAS41 protein.


Pssm-ID: 341128  Cd Length: 137  Bit Score: 279.52  E-value: 2.67e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011608  19 VTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPLRVVTKPPYEITETGWGEFEI 98
Cdd:cd16909    1 VTIVKPIVYGNIARYFGKKREEDGHTHQWTVYVKPYFNEDMSTYVKKVQFKLHESYANPLRVVTKPPYEVTETGWGEFEI 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 189011608  99 IIKIFFIDPNERPVTLYHLLKLFQSDTNAMLGKKTVVSEFYDEMIFQDPTAMMQQLL 155
Cdd:cd16909   81 IIKIFFIDPNERPVTLYHLLKLFQSDTNLMLGKKTLVSEFYDELIFQDPTAMMYQLL 137
YEATS_TFIID14_like cd16910
YEATS domain found in transcription initiation factor TFIID subunit 14 and similar proteins; ...
 21-148 2.63e-56

YEATS domain found in transcription initiation factor TFIID subunit 14 and similar proteins; YEATS domain containing proteins, which include Transcription initiation factor TFIID subunits 14 and 14b of Arabidopsis, shown to be part of the TFIID general transcriptional regulator complex in a two-hybrid screen. DNA regulation by chromatin thru histone post-translational modification and other mechanism involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state, and stimulate transcriptional activity, thru preferential interactions with crotonylated lysines on histones. The YEATS family is named for several family members: 'YNK7', 'ENL', 'AF-9', and 'TFIIF small subunit', and also contains the GAS41 protein.


Pssm-ID: 341129  Cd Length: 131  Bit Score: 175.46  E-value: 2.63e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011608  21 IVKPIVYGNVARYFGKKREEDgHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPLRVVTKPPYEITETGWGEFEIII 100
Cdd:cd16910    1 VSVPIVYGSIAFWLGKKADET-HTHKWTVYVRGANNEDLSYFIKKVVFVLHPSFANPTRVVTEPPFEVTETGWGEFEIGI 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 189011608 101 KIFFIDPNERPVTLYHLLKLFQSDTNAM-LGKKTVVSEFYDEMIFQDPT 148
Cdd:cd16910   80 TIHFKDDAEKPVELTHPLKLYPPPGSGPpSTKKPVVSEFYDEIVFVEPT 128
YEATS cd16887
YEATS domain family, chromatin reader proteins; The YEATS family is named for several family ...
 23-144 2.60e-49

YEATS domain family, chromatin reader proteins; The YEATS family is named for several family members: 'YNK7', 'ENL', 'AF-9', and 'TFIIF small subunit', and also contains the GAS41 protein, YEATS2, Drosophila D12, and others. DNA regulation by chromatin through histone post-translational modification and other mechanisms involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state and stimulates transcriptional activity through preferential interactions with crotonylated lysines on histones.


Pssm-ID: 341123  Cd Length: 120  Bit Score: 157.05  E-value: 2.60e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011608  23 KPIVYGNVARYFGKKrEEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPLRVVTKPPYEITETGWGEFEIIIKI 102
Cdd:cd16887    1 KPIVIGNVAEKIPKP-EPDDNTHKWTVYVRSPTNEDLSSFIKKVTFKLHPSFPNPVRVVTDPPFEVEEVGWGEFPIEIKI 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 189011608 103 FFIDPNERPVTLYHLLKLFQSDTnaMLGKKTVVSEFYDEMIF 144
Cdd:cd16887   80 YFKDSNEKPVTLSHFLKLHPDGS--PLKKPVVVSEKYDEIVF 119
YEATS_Yaf9_like cd16908
YEATS domain found in Yaf9 and similar proteins; Yaf9 is a YEATS domain family protein ...
 20-156 5.94e-48

YEATS domain found in Yaf9 and similar proteins; Yaf9 is a YEATS domain family protein essential in the function the NuA4 histone acetyltransferase complex and the SWR1-C ATP-dependent chromatin remodeling complex. Yaf9 shares structural similarity with histone chaperone Asf1, both exhibit histone H3 and H4 binding in vitro, and evidence supports both play a role in the same histone acetylation mechanism. DNA regulation by chromatin thru histone post-translational modification and other mechanism involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state, and stimulate transcriptional activity, thru preferential interactions with crotonylated lysines on histones. The YEATS family is named for several family members: `YNK7', `ENL', `AF-9', and `TFIIF small subunit', and also contains the GAS41 protein.


Pssm-ID: 341127  Cd Length: 145  Bit Score: 154.74  E-value: 5.94e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011608  20 TIVKPIVYGNVARYFGKKREE---DGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPLRVVTKPPYEITETGWGEF 96
Cdd:cd16908    1 QVSRPIVYGNTARPLTPEEKPkapPDHTHKWTVFVRGPDGEDLSYFIKKVVFKLHESYPNPNRTIEKPPFEVTETGWGEF 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 189011608  97 EIIIKIFFID-PNERPVTLYHLLKLF----QSDTNAMLGKKTVVSEFYDEMIFQDPTAMMQQLLT 156
Cdd:cd16908   81 EIQIKIYFVPeANEKPITLYHMLKLHpyedTAENDDLASGGPVVSVQYDEIVFNEPTEEFYDILM 145
YEATS pfam03366
YEATS family; We have named this family the YEATS family, after `YNK7', `ENL', `AF-9', and ...
 43-122 1.23e-34

YEATS family; We have named this family the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit'. This family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity


Pssm-ID: 460899  Cd Length: 80  Bit Score: 118.32  E-value: 1.23e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011608   43 HTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPLRVVTKPPYEITETGWGEFEIIIKIFFIDPNERPVTLYHLLKLFQ 122
Cdd:pfam03366   1 HTHKWTVYVRGLDNEDISYFIKKVVFKLHPSFANPVRVVKKPPFEVTETGWGEFEIRIKIYFKDKDEKPVTIYHDLKLHP 80
YEATS_YEATS2_like cd16907
YEATS domain found in YEATS2 and Drosophila D12; YEATS2 is a YEATS domain reader protein with ...
 23-135 2.39e-24

YEATS domain found in YEATS2 and Drosophila D12; YEATS2 is a YEATS domain reader protein with a preference for recognition of histone H3 crotonylation on lysine 27 (H3K27crHistone crotonylation upregulates gene expression in an AF9-dependent manner. DNA regulation by chromatin thru histone post-translational modification and other mechanism involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state, and stimulate transcriptional activity, thru preferential interactions with crotonylated lysines on histones. The YEATS family is named for several family members: 'YNK7', 'ENL', 'AF-9', and 'TFIIF small subunit', and also contains the GAS41 protein.


Pssm-ID: 341126  Cd Length: 123  Bit Score: 93.41  E-value: 2.39e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011608  23 KPIVYGNVARYFGK-KREEDGHTHQWTVYVK-PYRNEDMSAYVKKIQFKLHESYG-NPLRVVTKPPYEITETGWGEFEII 99
Cdd:cd16907    1 KRIIVGNVSKYIPPdEREDDKSTHKWMVYVRgPPEDPDIDHFVKKVRFFLHPSYApNDVVEVTKPPFHLTRRGWGEFPVR 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 189011608 100 IKIFFIDPNERPVTLYHLLKLFQSDTN-AMLGKKTVV 135
Cdd:cd16907   81 VQLHFKDPRNKPVDIIHNLKLDRTYTGlQTLGAETVV 117
YEATS_AF-9_like cd16906
YEATS domain found in ENL and AF-9-like proteins; Yeast AFF9 is a YEATS domain protein that ...
 36-94 6.51e-22

YEATS domain found in ENL and AF-9-like proteins; Yeast AFF9 is a YEATS domain protein that binds to modified histones, with a preference for crotonyllysine over acetyllysine. Histone crotonylation upregulates gene expression in an AF9-dependent manner. Sub-family also includes eleven-nineteen-leukemia protein ENL, which binds histones H3 and H1. DNA regulation by chromatin through histone post-translational modification and other mechanisms involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state and stimulates transcriptional activity through preferential interactions with crotonylated lysines on histones. The YEATS family is named for several family members: 'YNK7', 'ENL', 'AF-9', and 'TFIIF small subunit', and also contains the GAS41 protein.


Pssm-ID: 341125  Cd Length: 127  Bit Score: 87.24  E-value: 6.51e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 189011608  36 KKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPLRVVTKPPYEITETGWG 94
Cdd:cd16906   13 KKPTPEGHTHDWTVFVRGANGSDISHFVEKVVFHLHESFPKPKRVVKEPPFEVTESGYA 71
TFG3 COG5033
Transcription initiation factor IIF, auxiliary subunit [Transcription];
15-147 2.82e-19

Transcription initiation factor IIF, auxiliary subunit [Transcription];


Pssm-ID: 227366 [Multi-domain]  Cd Length: 225  Bit Score: 82.93  E-value: 2.82e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189011608  15 RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPLRVVTKPPYEITETGWG 94
Cdd:COG5033    6 RTERLKTQRVIIPGEAKPLGNEERFPVRHTHIWLVFVRAPGKEDIATIVKKVIFKLHPTFSNPTRTIESPPFEIKETGWG 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 189011608  95 EFEIIIKIFFID-PNERPVTLYHLLKL-------------FQSDTNAMLGKKTVV-SEFYDEMIFQDP 147
Cdd:COG5033   86 EFDIQIKIFFAEkAGEKTIHFYLHFGDepyavdepvdipvNRPDLTSELSKSGEVeSVYKREKRFNEP 153
YEATS_Taf14_like cd16905
YEATS domain found in Taf14 and similar proteins; Taf14 has been identified as a component of ...
 46-95 7.12e-10

YEATS domain found in Taf14 and similar proteins; Taf14 has been identified as a component of TFIIF and TFIID transcription factor complexes, various chromatin-remodeling complexes (such as SWI/SNF, INO80, and RSC) and the NuA3 histone acetyltransferase complex. DNA regulation by chromatin thru histone post-translational modification and other mechanism involves complexes with write, eraser and reader functions. YEATS domains act as readers of the chromatin state, and stimulate transcriptional activity, thru preferential interactions with crotonylated lysines on histones. Specifically, Taf14 has been show to be a reader of lysine crotonylation, associated with active gene promoters and enhancers and binding acetyllysine on in histone H3. The YEATS family is named for several family members: 'YNK7', 'ENL', 'AF-9', and 'TFIIF small subunit', and also contains the GAS41 protein.


Pssm-ID: 341124  Cd Length: 118  Bit Score: 54.88  E-value: 7.12e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 189011608  46 QWTVYV---KPYRNEDMSAYVKKIQFKLHESYGNPLRVVTKPPYEITETGWGE 95
Cdd:cd16905   27 KWSIELvllDPNGEEVPADIFDKVTYHLHPTFENPIRTFKKPPFRLEEKGWGE 79
pYEATS pfam20305
prokaryotic YEATS domain; This entry represents a prokaryotic YEATS domain. pYEATS is fused to ...
 47-94 1.65e-04

prokaryotic YEATS domain; This entry represents a prokaryotic YEATS domain. pYEATS is fused to diverse effector domains, suggesting that the binding to a ligand activates an effector-based response against an invasive threat. It has been predicted to specifically recognize invader-induced modifications of macromolecules by acyl moieties (e.g. phage-encoded acylations of surface polysaccharides) to unleash the fused effectors through a conformational change.


Pssm-ID: 466455  Cd Length: 73  Bit Score: 38.80  E-value: 1.65e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 189011608   47 WTVYVKPYRNEDMSayVKKIQFKLHESYGNPLRVVT--KPPYEITETGWG 94
Cdd:pfam20305   3 VRLWVDGPDPVLLL--IESVEYTLHPTFPNPVRTVTdrNGNFSLSLSAWG 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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