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Conserved domains on  [gi|197384591|ref|NP_001128076|]
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cytokine-like protein 1 precursor [Rattus norvegicus]

Protein Classification

CYTL1 domain-containing protein( domain architecture ID 10633506)

CYTL1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTL1 pfam15153
Cytokine-like protein 1; The function of this family of proteins, CYTL1, has not, as yet, been ...
 22-134 1.46e-74

Cytokine-like protein 1; The function of this family of proteins, CYTL1, has not, as yet, been determined. However it is thought to be a secretory protein expressed in CD34+ haemopoietic cells. This family of proteins is found in eukaryotes. Proteins in this family are typically between 134 and 145 amino acids in length. There are two conserved sequence motifs: PPTCYSR and DDC.


:

Pssm-ID: 434505  Cd Length: 127  Bit Score: 217.70  E-value: 1.46e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197384591   22 QPAPPTCYSRMLTLSREIMADFQSLQASEPEDSCVRYLPRLYLDIHNYCVLTKLRDFVASPQCWKMAEVDMLKDRVRKLY 101
Cdd:pfam15153  15 NAAPPTCYSRVLSLSKEITTDFQSLQASERTKPCVEYLPRLYLDIHNYCVLAKLRDFVASPQCREVPRVDALKRKVRKLY 94

                          90       100       110
                  ....*....|....*....|....*....|...
gi 197384591  102 TIMNSFCRRDLVFLSDDCSVLEHPIPETTDPPD 134
Cdd:pfam15153  95 TIMNSVCRRDLVFLTDDCSALETPIPVPTGLPD 127
 
Name Accession Description Interval E-value
CYTL1 pfam15153
Cytokine-like protein 1; The function of this family of proteins, CYTL1, has not, as yet, been ...
 22-134 1.46e-74

Cytokine-like protein 1; The function of this family of proteins, CYTL1, has not, as yet, been determined. However it is thought to be a secretory protein expressed in CD34+ haemopoietic cells. This family of proteins is found in eukaryotes. Proteins in this family are typically between 134 and 145 amino acids in length. There are two conserved sequence motifs: PPTCYSR and DDC.


Pssm-ID: 434505  Cd Length: 127  Bit Score: 217.70  E-value: 1.46e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197384591   22 QPAPPTCYSRMLTLSREIMADFQSLQASEPEDSCVRYLPRLYLDIHNYCVLTKLRDFVASPQCWKMAEVDMLKDRVRKLY 101
Cdd:pfam15153  15 NAAPPTCYSRVLSLSKEITTDFQSLQASERTKPCVEYLPRLYLDIHNYCVLAKLRDFVASPQCREVPRVDALKRKVRKLY 94

                          90       100       110
                  ....*....|....*....|....*....|...
gi 197384591  102 TIMNSFCRRDLVFLSDDCSVLEHPIPETTDPPD 134
Cdd:pfam15153  95 TIMNSVCRRDLVFLTDDCSALETPIPVPTGLPD 127
 
Name Accession Description Interval E-value
CYTL1 pfam15153
Cytokine-like protein 1; The function of this family of proteins, CYTL1, has not, as yet, been ...
 22-134 1.46e-74

Cytokine-like protein 1; The function of this family of proteins, CYTL1, has not, as yet, been determined. However it is thought to be a secretory protein expressed in CD34+ haemopoietic cells. This family of proteins is found in eukaryotes. Proteins in this family are typically between 134 and 145 amino acids in length. There are two conserved sequence motifs: PPTCYSR and DDC.


Pssm-ID: 434505  Cd Length: 127  Bit Score: 217.70  E-value: 1.46e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197384591   22 QPAPPTCYSRMLTLSREIMADFQSLQASEPEDSCVRYLPRLYLDIHNYCVLTKLRDFVASPQCWKMAEVDMLKDRVRKLY 101
Cdd:pfam15153  15 NAAPPTCYSRVLSLSKEITTDFQSLQASERTKPCVEYLPRLYLDIHNYCVLAKLRDFVASPQCREVPRVDALKRKVRKLY 94

                          90       100       110
                  ....*....|....*....|....*....|...
gi 197384591  102 TIMNSFCRRDLVFLSDDCSVLEHPIPETTDPPD 134
Cdd:pfam15153  95 TIMNSVCRRDLVFLTDDCSALETPIPVPTGLPD 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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