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Conserved domains on  [gi|300798730|ref|NP_001178829|]
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nuclear pore membrane glycoprotein 210-like [Rattus norvegicus]

Protein Classification

YjdB and Big_2 domain-containing protein( domain architecture ID 11475468)

YjdB and Big_2 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 1079-1153 9.88e-07

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


:

Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 48.16  E-value: 9.88e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 300798730  1079 PPFRLVPEKMTLIITNMMQIMSEGGPQPQST--IHFSISNQTVAAVNRRGQVTAKVVGTAVVHGTIQTVNEDTGKVI 1153
Cdd:pfam02368    1 TSVTVSPTSVTVLVGATQQLTVYVTPSNASDkkVTWTSSNGSVATVSQTGLVTGVAAGKATITATSKDGNDKATKTV 77
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 461-541 5.20e-04

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


:

Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 45.07  E-value: 5.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300798730  461 IQLKPSFLAFPhypLGISNRFTVQVE---GGSGNFTWSSSNETVAMVTTKGVVTAGQVrGNSTILARdVQNPFRSGNIKV 537
Cdd:COG5492   348 VTLNPTSVTLA---VGQTLTLTATVTpanATNKNVTWSSSDPSVATVDSNGLVTAVAA-GTATITAT-TKDGGKTATCTV 422


                  ....
gi 300798730  538 YVMK 541
Cdd:COG5492   423 TVTA 426
 
Name Accession Description Interval E-value
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 1079-1153 9.88e-07

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 48.16  E-value: 9.88e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 300798730  1079 PPFRLVPEKMTLIITNMMQIMSEGGPQPQST--IHFSISNQTVAAVNRRGQVTAKVVGTAVVHGTIQTVNEDTGKVI 1153
Cdd:pfam02368    1 TSVTVSPTSVTVLVGATQQLTVYVTPSNASDkkVTWTSSNGSVATVSQTGLVTGVAAGKATITATSKDGNDKATKTV 77
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 461-541 5.20e-04

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 45.07  E-value: 5.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300798730  461 IQLKPSFLAFPhypLGISNRFTVQVE---GGSGNFTWSSSNETVAMVTTKGVVTAGQVrGNSTILARdVQNPFRSGNIKV 537
Cdd:COG5492   348 VTLNPTSVTLA---VGQTLTLTATVTpanATNKNVTWSSSDPSVATVDSNGLVTAVAA-GTATITAT-TKDGGKTATCTV 422


                  ....
gi 300798730  538 YVMK 541
Cdd:COG5492   423 TVTA 426
BID_2 smart00635
Bacterial Ig-like domain 2;
1075-1152 6.35e-04

Bacterial Ig-like domain 2;


Pssm-ID: 214752 [Multi-domain]  Cd Length: 81  Bit Score: 40.46  E-value: 6.35e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300798730   1075 IEVFPPFRLVPEKMTLIITNMmqIMSEGGPQpQSTIHFSISNQTVA-AVNRRGQ-VTAKVVGTAVVHGTIQTVNEDTGKV 1152
Cdd:smart00635    5 VTVTPTTASVKKGLTLQLTAT--VTPSSAGV-TGKVTWTSSNPSVAtVVNASGLvVTAVAAGTATITATSGDGSSATGVI 81
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 460-523 2.51e-03

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 38.53  E-value: 2.51e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 300798730   460 PIQLKPSFLAfphYPLGISNRFTVQVE---GGSGNFTWSSSNETVAMVTTKGVVTAGQVrGNSTILA 523
Cdd:pfam02368    2 SVTVSPTSVT---VLVGATQQLTVYVTpsnASDKKVTWTSSNGSVATVSQTGLVTGVAA-GKATITA 64
 
Name Accession Description Interval E-value
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 1079-1153 9.88e-07

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 48.16  E-value: 9.88e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 300798730  1079 PPFRLVPEKMTLIITNMMQIMSEGGPQPQST--IHFSISNQTVAAVNRRGQVTAKVVGTAVVHGTIQTVNEDTGKVI 1153
Cdd:pfam02368    1 TSVTVSPTSVTVLVGATQQLTVYVTPSNASDkkVTWTSSNGSVATVSQTGLVTGVAAGKATITATSKDGNDKATKTV 77
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 461-541 5.20e-04

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 45.07  E-value: 5.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300798730  461 IQLKPSFLAFPhypLGISNRFTVQVE---GGSGNFTWSSSNETVAMVTTKGVVTAGQVrGNSTILARdVQNPFRSGNIKV 537
Cdd:COG5492   348 VTLNPTSVTLA---VGQTLTLTATVTpanATNKNVTWSSSDPSVATVDSNGLVTAVAA-GTATITAT-TKDGGKTATCTV 422


                  ....
gi 300798730  538 YVMK 541
Cdd:COG5492   423 TVTA 426
BID_2 smart00635
Bacterial Ig-like domain 2;
1075-1152 6.35e-04

Bacterial Ig-like domain 2;


Pssm-ID: 214752 [Multi-domain]  Cd Length: 81  Bit Score: 40.46  E-value: 6.35e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300798730   1075 IEVFPPFRLVPEKMTLIITNMmqIMSEGGPQpQSTIHFSISNQTVA-AVNRRGQ-VTAKVVGTAVVHGTIQTVNEDTGKV 1152
Cdd:smart00635    5 VTVTPTTASVKKGLTLQLTAT--VTPSSAGV-TGKVTWTSSNPSVAtVVNASGLvVTAVAAGTATITATSGDGSSATGVI 81
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 460-523 2.51e-03

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 38.53  E-value: 2.51e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 300798730   460 PIQLKPSFLAfphYPLGISNRFTVQVE---GGSGNFTWSSSNETVAMVTTKGVVTAGQVrGNSTILA 523
Cdd:pfam02368    2 SVTVSPTSVT---VLVGATQQLTVYVTpsnASDKKVTWTSSNGSVATVSQTGLVTGVAA-GKATITA 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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