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Conserved domains on  [gi|311771704|ref|NP_001185725|]
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piercer of microtubule wall 2 protein [Rattus norvegicus]

Protein Classification

DUF4490 domain-containing protein( domain architecture ID 142962)

DUF4490 domain-containing protein similar to Homo sapiens protein C15orf65

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4490 super family cl20782
Domain of unknown function (DUF4490); This family of proteins is found in eukaryotes. Proteins ...
 60-111 7.54e-08

Domain of unknown function (DUF4490); This family of proteins is found in eukaryotes. Proteins in this family are typically between 101 and 220 amino acids in length. In mice, a member of this family whose expression is induced by p53 may play a role in DNA damage response.


The actual alignment was detected with superfamily member pfam14892:

Pssm-ID: 434291  Cd Length: 99  Bit Score: 46.95  E-value: 7.54e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 311771704   60 MYKTNASQYGAFSPRPYFLPCKYLPQEQMFTEHLRATGFYQNNSLNIGPDRT 111
Cdd:pfam14892  48 IYRTSNQQYGSRAPTVHEMPKVFYPRSQKFSQHLLACGMYRNNGLNTSMEKS 99
 
Name Accession Description Interval E-value
DUF4490 pfam14892
Domain of unknown function (DUF4490); This family of proteins is found in eukaryotes. Proteins ...
 60-111 7.54e-08

Domain of unknown function (DUF4490); This family of proteins is found in eukaryotes. Proteins in this family are typically between 101 and 220 amino acids in length. In mice, a member of this family whose expression is induced by p53 may play a role in DNA damage response.


Pssm-ID: 434291  Cd Length: 99  Bit Score: 46.95  E-value: 7.54e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 311771704   60 MYKTNASQYGAFSPRPYFLPCKYLPQEQMFTEHLRATGFYQNNSLNIGPDRT 111
Cdd:pfam14892  48 IYRTSNQQYGSRAPTVHEMPKVFYPRSQKFSQHLLACGMYRNNGLNTSMEKS 99
 
Name Accession Description Interval E-value
DUF4490 pfam14892
Domain of unknown function (DUF4490); This family of proteins is found in eukaryotes. Proteins ...
 60-111 7.54e-08

Domain of unknown function (DUF4490); This family of proteins is found in eukaryotes. Proteins in this family are typically between 101 and 220 amino acids in length. In mice, a member of this family whose expression is induced by p53 may play a role in DNA damage response.


Pssm-ID: 434291  Cd Length: 99  Bit Score: 46.95  E-value: 7.54e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 311771704   60 MYKTNASQYGAFSPRPYFLPCKYLPQEQMFTEHLRATGFYQNNSLNIGPDRT 111
Cdd:pfam14892  48 IYRTSNQQYGSRAPTVHEMPKVFYPRSQKFSQHLLACGMYRNNGLNTSMEKS 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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