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Conserved domains on  [gi|402794267|ref|NP_001258044|]
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dynein axonemal assembly factor 3 [Rattus norvegicus]

Protein Classification

molybdopterin molybdotransferase MoeA; ribosomal eL19 family protein( domain architecture ID 13864566)

molybdopterin molybdotransferase MoeA mediates molybdenum ligation to molybdopterin| ribosomal eL19 family protein similar to Trypanosoma cruzi ribosomal protein L19-like protein that is part of the ribosome

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4471 pfam14740
Domain of unknown function (DUF4471); This family is conserved from fungi to Metazoa and ...
 154-434 1.20e-150

Domain of unknown function (DUF4471); This family is conserved from fungi to Metazoa and includes plants. The function is not known, but several members have zinc-finger domain, zf-MYND, pfam01753, at their very C-terminus. Others are also associated with DUF1279, pfam06916. This domain is more C-terminal in many members to DUF4470, pfam14737.


:

Pssm-ID: 464292  Cd Length: 303  Bit Score: 435.16  E-value: 1.20e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267  154 LSLRPLKFRERDALEAVFRFWSGGEkgPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHFHEFRRW 233
Cdd:pfam14740   1 LDLSLLKFKERDQLEAIFKFWRRPE--SHPFDIEKYWDQRLRQYLGTRYDSRKGVFDWDLHMKLHDRGANVIHSQEYRRW 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267  234 RDTGVAFELRDlSAYHVPNRTMASGRLLSHRGERVAARGYWGDIATGPFVAFGIEADDKSLLRTSNGQPVKTASEITQHN 313
Cdd:pfam14740  79 RETGVAFEFRE-GEYQVPNKTLASGRVGNHKGEKVAHRGYWGDIVTGPYISFGIETEDESLLKTSNGQHVKTATDVSERN 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267  314 VTELFRDVAAWRGPRA--------------IKGNVEETKSPEPDAPAQ---------EPFTIHFLPLDSSQTLHHKTCYR 370
Cdd:pfam14740 158 LLALFHELQTREPYEHdstdsarygsvqllMTELLPEGEDSEEENTADddksdlitlPGVKVHFLPLDSLRKLPHKSKYR 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 402794267  371 GRFQLLYVSCGMIHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAP 434
Cdd:pfam14740 238 NFFDIIFVSASMVHFLKPELFQILAPGAVLVVETAKYLVDLRKEQLQEFAEKVKELAKEAGFKP 301
DUF4470 pfam14737
Domain of unknown function (DUF4470); This family is conserved from fungi to Metazoa and ...
 16-122 1.02e-30

Domain of unknown function (DUF4470); This family is conserved from fungi to Metazoa and includes plants. The function is not known, but several members have zinc-finger domain, zf-MYND, pfam01753, at their very C-terminus. Others are also associated with DUF1279, pfam06916.


:

Pssm-ID: 464289  Cd Length: 97  Bit Score: 115.32  E-value: 1.02e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267   16 WWGLSPALDLQAESPPVDPDsqsktehkipELDALLLGSVDGRHMLRTLARAMLWPLRRFNFYVLENNLEAVARHMLIFS 95
Cdd:pfam14737   1 PWGNTPALDLLQLLPKNEGE----------DLNILLLGSGDLRNVLKTIASLPETYSGKLHITLNDRDPEVVARNILLLL 70

                          90       100
                  ....*....|....*....|....*..
gi 402794267   96 LALEEPEKMGLQERSETFLELWGNALL 122
Cdd:pfam14737  71 ILLEPDDNPGLDEAAELLLHLWYSAFL 97
PTZ00436 super family cl33183
60S ribosomal protein L19-like protein; Provisional
 463-579 2.51e-08

60S ribosomal protein L19-like protein; Provisional


The actual alignment was detected with superfamily member PTZ00436:

Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 56.11  E-value: 2.51e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267 463 ESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEV 542
Cdd:PTZ00436 231 KAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAA 310

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 402794267 543 VLPLEAISPPQADLAPPPEVISPVQEALA--MSSAIAPL 579
Cdd:PTZ00436 311 AAPAKAAAPPAKAAAPPAKAATPPAKAAAppAKAAAAPV 349
 
Name Accession Description Interval E-value
DUF4471 pfam14740
Domain of unknown function (DUF4471); This family is conserved from fungi to Metazoa and ...
 154-434 1.20e-150

Domain of unknown function (DUF4471); This family is conserved from fungi to Metazoa and includes plants. The function is not known, but several members have zinc-finger domain, zf-MYND, pfam01753, at their very C-terminus. Others are also associated with DUF1279, pfam06916. This domain is more C-terminal in many members to DUF4470, pfam14737.


Pssm-ID: 464292  Cd Length: 303  Bit Score: 435.16  E-value: 1.20e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267  154 LSLRPLKFRERDALEAVFRFWSGGEkgPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHFHEFRRW 233
Cdd:pfam14740   1 LDLSLLKFKERDQLEAIFKFWRRPE--SHPFDIEKYWDQRLRQYLGTRYDSRKGVFDWDLHMKLHDRGANVIHSQEYRRW 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267  234 RDTGVAFELRDlSAYHVPNRTMASGRLLSHRGERVAARGYWGDIATGPFVAFGIEADDKSLLRTSNGQPVKTASEITQHN 313
Cdd:pfam14740  79 RETGVAFEFRE-GEYQVPNKTLASGRVGNHKGEKVAHRGYWGDIVTGPYISFGIETEDESLLKTSNGQHVKTATDVSERN 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267  314 VTELFRDVAAWRGPRA--------------IKGNVEETKSPEPDAPAQ---------EPFTIHFLPLDSSQTLHHKTCYR 370
Cdd:pfam14740 158 LLALFHELQTREPYEHdstdsarygsvqllMTELLPEGEDSEEENTADddksdlitlPGVKVHFLPLDSLRKLPHKSKYR 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 402794267  371 GRFQLLYVSCGMIHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAP 434
Cdd:pfam14740 238 NFFDIIFVSASMVHFLKPELFQILAPGAVLVVETAKYLVDLRKEQLQEFAEKVKELAKEAGFKP 301
DUF4470 pfam14737
Domain of unknown function (DUF4470); This family is conserved from fungi to Metazoa and ...
 16-122 1.02e-30

Domain of unknown function (DUF4470); This family is conserved from fungi to Metazoa and includes plants. The function is not known, but several members have zinc-finger domain, zf-MYND, pfam01753, at their very C-terminus. Others are also associated with DUF1279, pfam06916.


Pssm-ID: 464289  Cd Length: 97  Bit Score: 115.32  E-value: 1.02e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267   16 WWGLSPALDLQAESPPVDPDsqsktehkipELDALLLGSVDGRHMLRTLARAMLWPLRRFNFYVLENNLEAVARHMLIFS 95
Cdd:pfam14737   1 PWGNTPALDLLQLLPKNEGE----------DLNILLLGSGDLRNVLKTIASLPETYSGKLHITLNDRDPEVVARNILLLL 70

                          90       100
                  ....*....|....*....|....*..
gi 402794267   96 LALEEPEKMGLQERSETFLELWGNALL 122
Cdd:pfam14737  71 ILLEPDDNPGLDEAAELLLHLWYSAFL 97
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 463-579 2.51e-08

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 56.11  E-value: 2.51e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267 463 ESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEV 542
Cdd:PTZ00436 231 KAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAA 310

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 402794267 543 VLPLEAISPPQADLAPPPEVISPVQEALA--MSSAIAPL 579
Cdd:PTZ00436 311 AAPAKAAAPPAKAAAPPAKAATPPAKAAAppAKAAAAPV 349
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 469-581 1.97e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 47.60  E-value: 1.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267  469 SKVLAPTPESINPPQADQAPSLEVMSpPKVDQTPPLEAMSPPEADQAPPLEAMSPPRAD-QIPPLEAMSPLQAEVVLPLE 547
Cdd:pfam05109 511 SAVTTPTPNATSPTPAVTTPTPNATS-PTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNaTIPTLGKTSPTSAVTTPTPN 589

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 402794267  548 AISP------PQAD--------LAPPPEVISPVQEAlamSSAIAPLKH 581
Cdd:pfam05109 590 ATSPtvgetsPQANttnhtlggTSSTPVVTSPPKNA---TSAVTTGQH 634
 
Name Accession Description Interval E-value
DUF4471 pfam14740
Domain of unknown function (DUF4471); This family is conserved from fungi to Metazoa and ...
 154-434 1.20e-150

Domain of unknown function (DUF4471); This family is conserved from fungi to Metazoa and includes plants. The function is not known, but several members have zinc-finger domain, zf-MYND, pfam01753, at their very C-terminus. Others are also associated with DUF1279, pfam06916. This domain is more C-terminal in many members to DUF4470, pfam14737.


Pssm-ID: 464292  Cd Length: 303  Bit Score: 435.16  E-value: 1.20e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267  154 LSLRPLKFRERDALEAVFRFWSGGEkgPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHFHEFRRW 233
Cdd:pfam14740   1 LDLSLLKFKERDQLEAIFKFWRRPE--SHPFDIEKYWDQRLRQYLGTRYDSRKGVFDWDLHMKLHDRGANVIHSQEYRRW 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267  234 RDTGVAFELRDlSAYHVPNRTMASGRLLSHRGERVAARGYWGDIATGPFVAFGIEADDKSLLRTSNGQPVKTASEITQHN 313
Cdd:pfam14740  79 RETGVAFEFRE-GEYQVPNKTLASGRVGNHKGEKVAHRGYWGDIVTGPYISFGIETEDESLLKTSNGQHVKTATDVSERN 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267  314 VTELFRDVAAWRGPRA--------------IKGNVEETKSPEPDAPAQ---------EPFTIHFLPLDSSQTLHHKTCYR 370
Cdd:pfam14740 158 LLALFHELQTREPYEHdstdsarygsvqllMTELLPEGEDSEEENTADddksdlitlPGVKVHFLPLDSLRKLPHKSKYR 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 402794267  371 GRFQLLYVSCGMIHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAP 434
Cdd:pfam14740 238 NFFDIIFVSASMVHFLKPELFQILAPGAVLVVETAKYLVDLRKEQLQEFAEKVKELAKEAGFKP 301
DUF4470 pfam14737
Domain of unknown function (DUF4470); This family is conserved from fungi to Metazoa and ...
 16-122 1.02e-30

Domain of unknown function (DUF4470); This family is conserved from fungi to Metazoa and includes plants. The function is not known, but several members have zinc-finger domain, zf-MYND, pfam01753, at their very C-terminus. Others are also associated with DUF1279, pfam06916.


Pssm-ID: 464289  Cd Length: 97  Bit Score: 115.32  E-value: 1.02e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267   16 WWGLSPALDLQAESPPVDPDsqsktehkipELDALLLGSVDGRHMLRTLARAMLWPLRRFNFYVLENNLEAVARHMLIFS 95
Cdd:pfam14737   1 PWGNTPALDLLQLLPKNEGE----------DLNILLLGSGDLRNVLKTIASLPETYSGKLHITLNDRDPEVVARNILLLL 70

                          90       100
                  ....*....|....*....|....*..
gi 402794267   96 LALEEPEKMGLQERSETFLELWGNALL 122
Cdd:pfam14737  71 ILLEPDDNPGLDEAAELLLHLWYSAFL 97
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 463-579 2.51e-08

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 56.11  E-value: 2.51e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267 463 ESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEV 542
Cdd:PTZ00436 231 KAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAA 310

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 402794267 543 VLPLEAISPPQADLAPPPEVISPVQEALA--MSSAIAPL 579
Cdd:PTZ00436 311 AAPAKAAAPPAKAAAPPAKAATPPAKAAAppAKAAAAPV 349
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 463-578 4.67e-08

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 55.34  E-value: 4.67e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267 463 ESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEV 542
Cdd:PTZ00436 224 KAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAA 303

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 402794267 543 VLPLEAISPPQADLAPPPEVIS-PVQEALAMSSAIAP 578
Cdd:PTZ00436 304 AAPAKAAAAPAKAAAPPAKAAApPAKAATPPAKAAAP 340
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 468-578 9.01e-08

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 54.57  E-value: 9.01e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267 468 PSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLE 547
Cdd:PTZ00436 222 PAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAK 301

                         90       100       110
                 ....*....|....*....|....*....|..
gi 402794267 548 AISPP-QADLAPPPEVISPVQEALAMSSAIAP 578
Cdd:PTZ00436 302 AAAAPaKAAAAPAKAAAPPAKAAAPPAKAATP 333
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 427-559 2.63e-06

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 49.95  E-value: 2.63e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267 427 AQAAGFAPHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEA 506
Cdd:PTZ00436 209 AAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKA 288

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 402794267 507 MSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLEAISPPQADLAPP 559
Cdd:PTZ00436 289 AAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPP 341
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 460-578 4.27e-06

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 49.18  E-value: 4.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267 460 SAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEAdQAPPLEAMSPPRADQIPPLEAMSPLQ 539
Cdd:PTZ00436 208 AAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKA-AAPPAKAAAPPAKAAAPPAKAAAPPA 286

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 402794267 540 AEVVLPLEAISPPQADLAPPPE-VISPVQEALAMSSAIAP 578
Cdd:PTZ00436 287 KAAAPPAKAAAAPAKAAAAPAKaAAAPAKAAAPPAKAAAP 326
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 420-552 8.12e-06

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 48.41  E-value: 8.12e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267 420 SDRVVEIAQAAGFAPHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVD 499
Cdd:PTZ00436 216 SAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKA 295

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 402794267 500 QTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLEAISPP 552
Cdd:PTZ00436 296 AAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAP 348
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 469-581 1.97e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 47.60  E-value: 1.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267  469 SKVLAPTPESINPPQADQAPSLEVMSpPKVDQTPPLEAMSPPEADQAPPLEAMSPPRAD-QIPPLEAMSPLQAEVVLPLE 547
Cdd:pfam05109 511 SAVTTPTPNATSPTPAVTTPTPNATS-PTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNaTIPTLGKTSPTSAVTTPTPN 589

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 402794267  548 AISP------PQAD--------LAPPPEVISPVQEAlamSSAIAPLKH 581
Cdd:pfam05109 590 ATSPtvgetsPQANttnhtlggTSSTPVVTSPPKNA---TSAVTTGQH 634
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
388-580 2.73e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 44.07  E-value: 2.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267 388 PELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAPHTGTKPSETFARFYKL------GDSTRGGGDSA 461
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRaeappaAPAPPATADRG 439

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267 462 VESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAE 541
Cdd:PRK07003 440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASRE 519

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 402794267 542 VVLPLEAISPPQADlAPPPEVISPVQEALAMSSAIAPLK 580
Cdd:PRK07003 520 DAPAAAAPPAPEAR-PPTPAAAAPAARAGGAAAALDVLR 557
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 458-565 3.54e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 43.75  E-value: 3.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267  458 GDSAVESGPVP--SKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPpEADQAPPLEAMSPPRADQIPPLEAM 535
Cdd:pfam05109 484 GASPVTPSPSPrdNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSP-TLGKTSPTSAVTTPTPNATSPTPAV 562

                          90       100       110
                  ....*....|....*....|....*....|.
gi 402794267  536 SPLQAEVVLP-LEAISPPQADLAPPPEVISP 565
Cdd:pfam05109 563 TTPTPNATIPtLGKTSPTSAVTTPTPNATSP 593
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 427-546 3.86e-04

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 43.01  E-value: 3.86e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267 427 AQAAGFAPHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEA 506
Cdd:PTZ00436 230 AKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKA 309

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 402794267 507 MSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPL 546
Cdd:PTZ00436 310 AAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPV 349
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
456-578 6.54e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.56  E-value: 6.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267 456 GGGDSAVESgPVPSKVLAPTPESINPPQADQAPSLEVMSPPkvdQTPPLEAMSPPEAD----QAPPLEAMSPPR-ADQIP 530
Cdd:PRK12323 368 SGGGAGPAT-AAAAPVAQPAPAAAAPAAAAPAPAAPPAAPA---AAPAAAAAARAVAAaparRSPAPEALAAARqASARG 443

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 402794267 531 PLEAMSPLQAEVVLPLEAISPPQADLAPPP--EVISPVQEALAMSSAIAP 578
Cdd:PRK12323 444 PGGAPAPAPAPAAAPAAAARPAAAGPRPVAaaAAAAPARAAPAAAPAPAD 493
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 433-578 1.64e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 1.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267 433 APHTGTKPSETFARFYKLGDSTRGGGDSAVESG-PVPSKVLAPTPESINPPQADQAPSLEVmspPKVDQTPPLEAMSPPE 511
Cdd:PRK07764 642 APAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGgAAPAAPPPAPAPAAPAAPAGAAPAQPA---PAPAATPPAGQADDPA 718

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 402794267 512 ADQAPPLEAMSPPR---ADQIP----PLEAMSPLQAEVVLPLEAISPPQADLAPPPEVISPVQEALAMSSAIAP 578
Cdd:PRK07764 719 AQPPQAAQGASAPSpaaDDPVPlppePDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPS 792
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 464-578 3.06e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.47  E-value: 3.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267 464 SGPVPSKVLAPTPESINPPQADQAPslevmSPPKVDQTPPLEAMSPPEADQAP--PLEAMSPPRADQiPPLEAMSPLQAE 541
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARPEAAAPAA-----APVAQAAAAPAPAAAPAAAASAPaaPPAAAPPAPVAA-PAAAAPAAAPAA 440

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 402794267 542 VVLPLEAISPPQADLAPPPEVISP-VQEALAMSSAIAP 578
Cdd:PRK14951 441 APAAVALAPAPPAQAAPETVAIPVrVAPEPAVASAAPA 478
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 466-561 7.30e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 39.31  E-value: 7.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267 466 PVPSKVLAPTPESInPPQADQAPSlevmSPPKVDQTPPleaMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLP 545
Cdd:PRK14951 393 PVAQAAAAPAPAAA-PAAAASAPA----APPAAAPPAP---VAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPV 464

                         90
                 ....*....|....*.
gi 402794267 546 LEAISPPQADLAPPPE 561
Cdd:PRK14951 465 RVAPEPAVASAAPAPA 480
PHA03247 PHA03247
large tegument protein UL36; Provisional
 426-578 7.41e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.54  E-value: 7.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267  426 IAQAAGFA-PHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAP--------TPESINPPQADQAPSlevmSPP 496
Cdd:PHA03247 2692 VGSLTSLAdPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPpavpagpaTPGGPARPARPPTTA----GPP 2767

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267  497 KvdQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLEAISP---PQADLAPPPEVI--------SP 565
Cdd:PHA03247 2768 A--PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPaasPAGPLPPPTSAQptapppppGP 2845

                         170
                  ....*....|...
gi 402794267  566 VQEALAMSSAIAP 578
Cdd:PHA03247 2846 PPPSLPLGGSVAP 2858
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 460-570 8.82e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 38.93  E-value: 8.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 402794267 460 SAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQ---APPLEAMSPPRADQIPPLEAMS 536
Cdd:PRK14951 375 PAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPaaaAPAAAPAAAPAAVALAPAPPAQ 454

                         90       100       110
                 ....*....|....*....|....*....|....
gi 402794267 537 PLQAEVVLPLEAISPPQADLAPPPEVISPVQEAL 570
Cdd:PRK14951 455 AAPETVAIPVRVAPEPAVASAAPAPAAAPAAARL 488
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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