|
Name |
Accession |
Description |
Interval |
E-value |
| cwf21_SRRM2 |
cd21375 |
cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive ... |
39-102 |
4.25e-31 |
|
cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive matrix protein 2 (SRRM2) is also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803). It is required for pre-mRNA splicing as component of the spliceosome. It contains a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
Pssm-ID: 410601 [Multi-domain] Cd Length: 64 Bit Score: 117.42 E-value: 4.25e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 460838694 39 EEELRRLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21375 1 EEELRRLEAALVKKPNPDILDHERKRRVELKCLELEEMMEEQGYSEEEIQEKVATFRLMLLEKD 64
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1985-2442 |
4.34e-11 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 69.20 E-value: 4.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 1985 RSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRAARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVA 2064
Cdd:PHA03247 2583 TSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVS 2662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2065 LsSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGS----ARTPmsvlqqtggsmmdGPGPRIPDHPRSSVPENHAQSRIALA 2140
Cdd:PHA03247 2663 R-PRRARRLGRAAQASSPPQRPRRRAARPTVGSltslADPP-------------PPPPTPEPAPHALVSATPLPPGPAAA 2728
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2141 LTAISLGTARPPPSMSAAGLAARMSqvPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAIPASVNLADSRTPAA 2220
Cdd:PHA03247 2729 RQASPALPAAPAPPAVPAGPATPGG--PARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD 2806
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2221 AAAMnlASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSLTGSGTPPTAgnyPSSSRTPQAPTPANLVGPRSA 2300
Cdd:PHA03247 2807 PPAA--VLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGG---DVRRRPPSRSPAAKPAAPARP 2881
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2301 HGTAPVNIAGSRTPAALAPTNLSSSRM-APALSGANLTSPRVPLSAYERVSGRTSPLLLDRARSRTPPSAPSQSRMTSER 2379
Cdd:PHA03247 2882 PVRRLARPAVSRSTESFALPPDQPERPpQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQ 2961
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 460838694 2380 ERAPSPASRMVQAPSQSLLPPAQDRPrSPVPSAFSDQSRSIAQTTPVAGSQSLSSGTVAKSTS 2442
Cdd:PHA03247 2962 PWLGALVPGRVAVPRFRVPQPAPSRE-APASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
|
|
| cwf21 |
pfam08312 |
cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a ... |
58-101 |
1.51e-07 |
|
cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe. The function of the cwf21 domain is to bind directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevent Prp8 from binding. The structure of this domain has recently been solved which shows this domain to be composed of two alpha helices.
Pssm-ID: 462421 [Multi-domain] Cd Length: 44 Bit Score: 49.73 E-value: 1.51e-07
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 460838694 58 LDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEK 101
Cdd:pfam08312 1 LEHERKREIEVKVLELRDELEEQGLSEEEIEEKVDELRKKLLAE 44
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
292-609 |
2.52e-07 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 56.72 E-value: 2.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 292 TGQSPPLASGHQGEVDAPSEPGatniQQPSSPDPSTKQSSSPYEDKDKKEKSAVRPSPSPERSSTGPELPAPT-PLLVEQ 370
Cdd:PHA03307 89 TWSLSTLAPASPAREGSPTPPG----PSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGAsPAAVAS 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 371 HGDSPRPLA-AIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSSssescppspqptklsRHASSSPESLKPTPAPGsrre 449
Cdd:PHA03307 165 DAASSRQAAlPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPR---------------RSSPISASASSPAPAPG---- 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 450 isssptsknRSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGR 529
Cdd:PHA03307 226 ---------RSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSP 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 530 SRSPQRPGwSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRG 609
Cdd:PHA03307 297 SPSPSSPG-SGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAP 375
|
|
| U2AF_lg |
TIGR01642 |
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ... |
480-600 |
4.77e-04 |
|
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.
Pssm-ID: 273727 [Multi-domain] Cd Length: 509 Bit Score: 45.65 E-value: 4.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 480 RSRSPATKRGRSRSRTPTK-RGHSRSRSpqwrRSRSAQRWGKSRSPQRRGRSRSpqrpgwsRSRNTQRRGRSRSARRGRS 558
Cdd:TIGR01642 5 PDREREKSRGRDRDRSSERpRRRSRDRS----RFRDRHRRSRERSYREDSRPRD-------RRRYDSRSPRSLRYSSVRR 73
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 460838694 559 HSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRtpaRRRS 600
Cdd:TIGR01642 74 SRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDD---KKRS 112
|
|
| RSRP |
pfam17069 |
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown. |
435-603 |
1.55e-03 |
|
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.
Pssm-ID: 293674 [Multi-domain] Cd Length: 299 Bit Score: 43.23 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 435 PESLKPTPAPGSRREISSS-PTSKNRSHGRAKRDKSHSHTPSHRAGRSRS-PATKRGRSRSRTPTKR---GHSRSRSPQW 509
Cdd:pfam17069 10 PGSPQEKKSPSTSSSGSSSrLSSRSRSRSSSRSSRSHSRSSSRFSSRSRSrPRRSRSRSRSRRRHQRkyrRYSRSYSRSR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 510 RRSRSAQRWGKSRSPQRRGRSRSPQRpgwSRSRNTQRRGRSRSARRGRSHSRSpatrGRSRSRTPARRGRSRSRTpaRRR 589
Cdd:pfam17069 90 SRSRRRRYYRRSRYRYSRRYYRSPSR---SRSRSRSRSRGRSYYAIWRGSRYY----GFGRTVYPERSPRWRSRS--RTR 160
|
170
....*....|....
gi 460838694 590 SRSRTPARRRSRSR 603
Cdd:pfam17069 161 SRSRTPFRLSEKER 174
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| cwf21_SRRM2 |
cd21375 |
cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive ... |
39-102 |
4.25e-31 |
|
cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive matrix protein 2 (SRRM2) is also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803). It is required for pre-mRNA splicing as component of the spliceosome. It contains a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
Pssm-ID: 410601 [Multi-domain] Cd Length: 64 Bit Score: 117.42 E-value: 4.25e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 460838694 39 EEELRRLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21375 1 EEELRRLEAALVKKPNPDILDHERKRRVELKCLELEEMMEEQGYSEEEIQEKVATFRLMLLEKD 64
|
|
| cwf21_SRRM3 |
cd21376 |
cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins; Serine ... |
37-102 |
3.44e-23 |
|
cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins; Serine/arginine repetitive matrix protein 3 (SRRM3) may play a role in regulating breast cancer cell invasiveness. It may also be involved in RYBP-mediated breast cancer progression. SRRM3 contains a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
Pssm-ID: 410602 [Multi-domain] Cd Length: 68 Bit Score: 95.19 E-value: 3.44e-23
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 460838694 37 KGEEELRRLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21376 1 KSEEEIKKLDAALVKKPNREILDHERKRKVELKCMEMQELMEEQGYTEEEIRQKVSTFRQMLMEKE 66
|
|
| cwf21_SRRM2-like |
cd21373 |
cwf21 domain found in serine/arginine repetitive matrix proteins, SRRM2, SRRM3 and similar ... |
53-102 |
5.78e-17 |
|
cwf21 domain found in serine/arginine repetitive matrix proteins, SRRM2, SRRM3 and similar proteins; This subfamily includes SRRM2 and SRRM3, both of which contain a cwf21 domain at the N-terminus. SRRM2, also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803), is required for pre-mRNA splicing as component of the spliceosome. SRRM3 may play a role in regulating breast cancer cell invasiveness. It may be involved in RYBP-mediated breast cancer progression. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
Pssm-ID: 410600 [Multi-domain] Cd Length: 50 Bit Score: 76.84 E-value: 5.78e-17
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 460838694 53 PNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21373 1 PNKEILDHERKRKIEVKCLELEDLLEEQGYTEEEIQAKVDEYRALLLEKD 50
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1985-2442 |
4.34e-11 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 69.20 E-value: 4.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 1985 RSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRAARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVA 2064
Cdd:PHA03247 2583 TSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVS 2662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2065 LsSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGS----ARTPmsvlqqtggsmmdGPGPRIPDHPRSSVPENHAQSRIALA 2140
Cdd:PHA03247 2663 R-PRRARRLGRAAQASSPPQRPRRRAARPTVGSltslADPP-------------PPPPTPEPAPHALVSATPLPPGPAAA 2728
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2141 LTAISLGTARPPPSMSAAGLAARMSqvPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAIPASVNLADSRTPAA 2220
Cdd:PHA03247 2729 RQASPALPAAPAPPAVPAGPATPGG--PARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD 2806
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2221 AAAMnlASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSLTGSGTPPTAgnyPSSSRTPQAPTPANLVGPRSA 2300
Cdd:PHA03247 2807 PPAA--VLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGG---DVRRRPPSRSPAAKPAAPARP 2881
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2301 HGTAPVNIAGSRTPAALAPTNLSSSRM-APALSGANLTSPRVPLSAYERVSGRTSPLLLDRARSRTPPSAPSQSRMTSER 2379
Cdd:PHA03247 2882 PVRRLARPAVSRSTESFALPPDQPERPpQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQ 2961
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 460838694 2380 ERAPSPASRMVQAPSQSLLPPAQDRPrSPVPSAFSDQSRSIAQTTPVAGSQSLSSGTVAKSTS 2442
Cdd:PHA03247 2962 PWLGALVPGRVAVPRFRVPQPAPSRE-APASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
|
|
| cwf21_CWC21-like |
cd21372 |
cwf21 domain found in fungal complexed with CEF1 protein 21 (CWC21) and similar proteins; This ... |
54-102 |
3.95e-10 |
|
cwf21 domain found in fungal complexed with CEF1 protein 21 (CWC21) and similar proteins; This subfamily includes complexed with CEF1 protein 21 (CWC21) from budding yeast, complexed with cdc5 protein 21 (CWF21) from fission yeast, as well as their orthologs, serine/arginine repetitive matrix proteins (SRRM2 and SRRM3) from vertebrates. Both CWC21 and CWF21 are pre-mRNA-splicing factors that may function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome, together with ISY1. SRRM2 is required for pre-mRNA splicing as a component of the spliceosome. SRRM3 may play a role in regulating breast cancer cell invasiveness. It may be involved in RYBP-mediated breast cancer progression. Members of this family contain a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.
Pssm-ID: 410599 [Multi-domain] Cd Length: 49 Bit Score: 57.10 E-value: 3.95e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 460838694 54 NPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21372 1 DKEILEHERKRQIELKCLELRDELEDEGLSEEEIEEKVDELREKLLKEL 49
|
|
| cwf21 |
cd21369 |
cwf21 domain; The cwf21 domain is involved in mRNA splicing; it binds directly to the ... |
55-101 |
1.20e-09 |
|
cwf21 domain; The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevents its binding to Prp8. The domain is composed of two alpha helices. Proteins containing the cwf21 domain include complexed with CEF1 protein 21 (CWC21) from budding yeast, complexed with cdc5 protein 21 (CWF21) from fission yeast, as well as their orthologs, serine/arginine repetitive matrix proteins (SRRM2 and SRRM3) from vertebrates. This domain family also includes U2-associated protein SR140 from Eumetazoa, protein RRC1, and similar proteins from plants.
Pssm-ID: 410596 [Multi-domain] Cd Length: 48 Bit Score: 55.94 E-value: 1.20e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 460838694 55 PDILDHERKRRVELRCLELEEMMEEQG-YEEQQIQEKVATFRLMLLEK 101
Cdd:cd21369 1 MDEEKRAKKREIELKVMELRDELEEQGrKPEQQIQEKVEHYRDKLLQR 48
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
2047-2484 |
1.36e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 61.11 E-value: 1.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2047 ATPPATRNHS--GSRTPPVALSSSRMSCFSRPSMSPTPlDRCRSPGmlEPLGSARTPMsvlqQTGGSMMDGPGPRIPDHP 2124
Cdd:PHA03247 2558 AAPPAAPDRSvpPPRPAPRPSEPAVTSRARRPDAPPQS-ARPRAPV--DDRGDPRGPA----PPSPLPPDTHAPDPPPPS 2630
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2125 RSSVPENHAQSRIALA------LTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLR--TAPAANLAsRIPAASAAAM 2196
Cdd:PHA03247 2631 PSPAANEPDPHPPPTVppperpRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARptVGSLTSLA-DPPPPPPTPE 2709
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2197 NLASARTSAIPASVNLADSRT---PAAAAAMNLASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSLTgsgTP 2273
Cdd:PHA03247 2710 PAPHALVSATPLPPGPAAARQaspALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLT---RP 2786
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2274 PTAGNYPSSSRTPQAPTPANLVGPRSAHGTApvnIAGSRTPAALAPTNLSSSRMAPALsganltsPRVPLSAYERVSGRT 2353
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAA---LPPAASPAGPLPPPTSAQPTAPPP-------PPGPPPPSLPLGGSV 2856
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2354 SP--LLLDRARSRTPPSAPSQSRMTSERERAPSPASRMVQAPSQSLLPPAQDR-PRSPVPSAFSDQSRSIAQTTPVAGSQ 2430
Cdd:PHA03247 2857 APggDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPqPQAPPPPQPQPQPPPPPQPQPPPPPP 2936
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 460838694 2431 SLSSGTVAKSTSSASDHNGMLSGPAPGVSHAEGGEPHASTGAQQPSALAVLQPA 2484
Cdd:PHA03247 2937 PRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990
|
|
| cwf21 |
pfam08312 |
cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a ... |
58-101 |
1.51e-07 |
|
cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe. The function of the cwf21 domain is to bind directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevent Prp8 from binding. The structure of this domain has recently been solved which shows this domain to be composed of two alpha helices.
Pssm-ID: 462421 [Multi-domain] Cd Length: 44 Bit Score: 49.73 E-value: 1.51e-07
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 460838694 58 LDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEK 101
Cdd:pfam08312 1 LEHERKREIEVKVLELRDELEEQGLSEEEIEEKVDELRKKLLAE 44
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
292-609 |
2.52e-07 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 56.72 E-value: 2.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 292 TGQSPPLASGHQGEVDAPSEPGatniQQPSSPDPSTKQSSSPYEDKDKKEKSAVRPSPSPERSSTGPELPAPT-PLLVEQ 370
Cdd:PHA03307 89 TWSLSTLAPASPAREGSPTPPG----PSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGAsPAAVAS 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 371 HGDSPRPLA-AIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSSssescppspqptklsRHASSSPESLKPTPAPGsrre 449
Cdd:PHA03307 165 DAASSRQAAlPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPR---------------RSSPISASASSPAPAPG---- 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 450 isssptsknRSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGR 529
Cdd:PHA03307 226 ---------RSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSP 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 530 SRSPQRPGwSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRG 609
Cdd:PHA03307 297 SPSPSSPG-SGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAP 375
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
2151-2408 |
4.94e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 55.63 E-value: 4.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2151 PPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAI---PASVNLADSRTPAAAAAMNLA 2227
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAaaaAATRAEAPPAAPAPPATADRG 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2228 SPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSLTGSGTPPTAGNYPSSSRTPQAPTPANLVGPRSAHGTAPVN 2307
Cdd:PRK07003 440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASRE 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2308 --IAGSRTPAALAPTNLSSSRMAPALSGANLTSPRVPLSAYERVSGRTSPLLLDRARS-----RTPPSAPSQSRMTSERE 2380
Cdd:PRK07003 520 daPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPaaapaAAPKPAAPRVAVQVPTP 599
|
250 260
....*....|....*....|....*...
gi 460838694 2381 RAPSPASRMVQAPSQSLLPPAQDRPRSP 2408
Cdd:PRK07003 600 RARAATGDAPPNGAARAEQAAESRGAPP 627
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
2139-2355 |
7.04e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 48.33 E-value: 7.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2139 LALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASRiPAASAAAMNLASARTSAIPASVNLADSRTP 2218
Cdd:PRK12323 361 LAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAA-PAAAAAARAVAAAPARRSPAPEALAAARQA 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2219 AAAAAMNLASPRTAVAPSAVN-----LADPRTPAASAVNLAGARTPAALAALSltGSGTPP---TAGNYPSSSRTPQAPT 2290
Cdd:PRK12323 440 SARGPGGAPAPAPAPAAAPAAaarpaAAGPRPVAAAAAAAPARAAPAAAPAPA--DDDPPPweeLPPEFASPAPAQPDAA 517
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 460838694 2291 PANLVgprsahgTAPVNIAGSRTPAALAPTNLSSSRMAPALSGANLTSPRVPLSAYERVSGRTSP 2355
Cdd:PRK12323 518 PAGWV-------AESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPD 575
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
2204-2428 |
1.40e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 47.56 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2204 SAIPASVNLADSRTPAAAAAMNLASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAAL------SLTGSGTPPTAG 2277
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALaaarqaSARGPGGAPAPA 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2278 NYPSSSRTPQAPTP-ANLVGPRSAHGTAPVNIAGSRTPAALAPTNLSSSRMAPALSGANLTSPRVPLSAYERVSGRTSPL 2356
Cdd:PRK12323 452 PAPAAAPAAAARPAaAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPAT 531
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 460838694 2357 LLDRARSRTPPSAPSQsrmtsererAPSPASRMVQAPSQSLLPPAQDRPRspVPSAFSDQSRSIAQTTPVAG 2428
Cdd:PRK12323 532 ADPDDAFETLAPAPAA---------APAPRAAAATEPVVAPRPPRASASG--LPDMFDGDWPALAARLPVRG 592
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
293-599 |
1.52e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 47.47 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 293 GQSPPLASGHQGEVDAPSEPGATNIQQPSSPDPSTKQSSSPYEDKDKKEKSAVRPSPSPERSSTGPELPAPTPLLvEQHG 372
Cdd:PHA03307 150 ASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAP-GRSA 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 373 DSPRPLAAIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSSSSESCPPSPQPTKLSRHASSSPESLKPTPAPGSRREISS 452
Cdd:PHA03307 229 ADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPA 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 453 SPTSKNRSHGRAKRDkSHSHTPSHRAGRSRSPATKRGRSRSRTPtkrghSRSRSPQWRRSRSAQRwgksRSPQRRGRSRS 532
Cdd:PHA03307 309 PSSPRASSSSSSSRE-SSSSSTSSSSESSRGAAVSPGPSPSRSP-----SPSRPPPPADPSSPRK----RPRPSRAPSSP 378
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 460838694 533 PQRPGWSRSRNTqrrgrsrsarrgrshSRSPATRGRSRSRTPAR-RGRSRSRTPARRRSRSRTPARRR 599
Cdd:PHA03307 379 AASAGRPTRRRA---------------RAAVAGRARRRDATGRFpAGRPRPSPLDAGAASGAFYARYP 431
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
294-685 |
2.10e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 47.09 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 294 QSPPLASGHQGEVDAPSEPGATNI------QQPSSPDPSTKQSSSPYEDKDKKEKSAVRPSPSPERSSTGPELPAPTPll 367
Cdd:PHA03307 31 AADDLLSGSQGQLVSDSAELAAVTvvagaaACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTP-- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 368 VEQHGDSPRPLAAIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSSSSESCPPSPQPTKLSRHAS----SSPESLKPTPA 443
Cdd:PHA03307 109 PGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAAlplsSPEETARAPSS 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 444 PGSRREISSSPTSKNRSHGRAKRDKSHSHtPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRsrsaqrwGKSRS 523
Cdd:PHA03307 189 PPAEPPPSTPPAAASPRPPRRSSPISASA-SSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENEC-------PLPRP 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 524 PQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSR-------TPARRRSRSRTPA 596
Cdd:PHA03307 261 APITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSsressssSTSSSSESSRGAA 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 597 RRRSRSRTPARRGRSRSRTPTRRRSRTRSPVRRRSRSRSQARRSGRSRSRTPARRSGRSRSRTPARRGRSRSRTPARRSG 676
Cdd:PHA03307 341 VSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAG 420
|
....*....
gi 460838694 677 RSRSRTPAR 685
Cdd:PHA03307 421 AASGAFYAR 429
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
399-609 |
2.20e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 46.82 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 399 GCSPPKSPEKPPQSSSSESCPPSPQPTKLSRHASSSPESLKPTPAPGSRREISSSPTSKNRSHGRAKRDKSHSHTPSHRA 478
Cdd:PRK12678 62 GAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGA 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 479 GRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRS 558
Cdd:PRK12678 142 ARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRR 221
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 460838694 559 HSRSPATRGRSRSRTPARRGRSRSRTPARRR-----SRSRTPARRRSRSRTPARRG 609
Cdd:PRK12678 222 DGGDRRGRRRRRDRRDARGDDNREDRGDRDGddgegRGGRRGRRFRDRDRRGRRGG 277
|
|
| U2AF_lg |
TIGR01642 |
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ... |
480-600 |
4.77e-04 |
|
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.
Pssm-ID: 273727 [Multi-domain] Cd Length: 509 Bit Score: 45.65 E-value: 4.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 480 RSRSPATKRGRSRSRTPTK-RGHSRSRSpqwrRSRSAQRWGKSRSPQRRGRSRSpqrpgwsRSRNTQRRGRSRSARRGRS 558
Cdd:TIGR01642 5 PDREREKSRGRDRDRSSERpRRRSRDRS----RFRDRHRRSRERSYREDSRPRD-------RRRYDSRSPRSLRYSSVRR 73
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 460838694 559 HSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRtpaRRRS 600
Cdd:TIGR01642 74 SRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDD---KKRS 112
|
|
| PHA03328 |
PHA03328 |
nuclear egress lamina protein UL31; Provisional |
569-609 |
1.50e-03 |
|
nuclear egress lamina protein UL31; Provisional
Pssm-ID: 223046 Cd Length: 316 Bit Score: 43.55 E-value: 1.50e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 460838694 569 SRSRTPARRGRSRSRTPARRRSRSRtpARRRSRSRTPARRG 609
Cdd:PHA03328 14 RRSRRAARRSRRDGRVGSRGRSRYR--SRRRSSRRSSTRRA 52
|
|
| RSRP |
pfam17069 |
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown. |
435-603 |
1.55e-03 |
|
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.
Pssm-ID: 293674 [Multi-domain] Cd Length: 299 Bit Score: 43.23 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 435 PESLKPTPAPGSRREISSS-PTSKNRSHGRAKRDKSHSHTPSHRAGRSRS-PATKRGRSRSRTPTKR---GHSRSRSPQW 509
Cdd:pfam17069 10 PGSPQEKKSPSTSSSGSSSrLSSRSRSRSSSRSSRSHSRSSSRFSSRSRSrPRRSRSRSRSRRRHQRkyrRYSRSYSRSR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 510 RRSRSAQRWGKSRSPQRRGRSRSPQRpgwSRSRNTQRRGRSRSARRGRSHSRSpatrGRSRSRTPARRGRSRSRTpaRRR 589
Cdd:pfam17069 90 SRSRRRRYYRRSRYRYSRRYYRSPSR---SRSRSRSRSRGRSYYAIWRGSRYY----GFGRTVYPERSPRWRSRS--RTR 160
|
170
....*....|....
gi 460838694 590 SRSRTPARRRSRSR 603
Cdd:pfam17069 161 SRSRTPFRLSEKER 174
|
|
| SF-CC1 |
TIGR01622 |
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
510-607 |
1.62e-03 |
|
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.
Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 43.75 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 510 RRSRSAQRWGKSRSPQRRGRSRSPQRPGwSRSRNTQRRGRSRSARRgrshsrspatRGRSRSRTPARRGRSRSRTPaRRR 589
Cdd:TIGR01622 2 YRDRERERLRDSSSAGDRDRRRDKGRER-SRDRSRDRERSRSRRRD----------RHRDRDYYRGRERRSRSRRP-NRR 69
|
90
....*....|....*...
gi 460838694 590 SRSRTPARRRSRSRTPAR 607
Cdd:TIGR01622 70 YRPREKRRRRGDSYRRRR 87
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
2105-2477 |
1.89e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 44.01 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2105 LQQTGGSMMDGPGPRIPDHPRSSVPENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRT-APAAN 2183
Cdd:PHA03307 21 FPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTlAPASP 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2184 LASRIPAASAAAMNLASARTSAIPASVNLADSRTPAAAAAMNLASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALA 2263
Cdd:PHA03307 101 AREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2264 ALSLTGSGTPPTAGNYPSSSRTPQAPTPANLVGPRSAHGTAPVNIAGSRTPAALAPTNLSSSRMAPALSGANLTSPRVPL 2343
Cdd:PHA03307 181 ETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRP 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2344 SAYERVSGRTSPLLLDRARSRTPPSAPSqsrmTSERERAPSPasrmvqAPSQSLLPPAQDRPRSpVPSAFSDQSRSIAQT 2423
Cdd:PHA03307 261 APITLPTRIWEASGWNGPSSRPGPASSS----SSPRERSPSP------SPSSPGSGPAPSSPRA-SSSSSSSRESSSSST 329
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 460838694 2424 TPV-AGSQSLSSGTVAKSTSSASDHNGmlSGPAPGVSHAEGGEPHASTGAQQPSA 2477
Cdd:PHA03307 330 SSSsESSRGAAVSPGPSPSRSPSPSRP--PPPADPSSPRKRPRPSRAPSSPAASA 382
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
2108-2385 |
2.11e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 43.68 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2108 TGGSmmdGPGPRIPDHPRSSVPENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASR 2187
Cdd:PRK07003 363 TGGG---APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRG 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2188 IPAASAAAMNLASARTSAIPASVNLADSRTPAAAAAMNlASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSL 2267
Cdd:PRK07003 440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSA-SAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASR 518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2268 TGSGTPPTAGNYPSSSRTPQAPTPANLVGPRSAHGTAPVNiAGSRTPAalaptnlSSSRMAPALSGANLTSPRVPLSAYE 2347
Cdd:PRK07003 519 EDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRN-AGMRVSS-------DRGARAAAAAKPAAAPAAAPKPAAP 590
|
250 260 270
....*....|....*....|....*....|....*...
gi 460838694 2348 RVSGRTSPLLLDRARSRTPPSAPSQSRMTSERERAPSP 2385
Cdd:PRK07003 591 RVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPP 628
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
2268-2563 |
2.93e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 43.30 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2268 TGSGTPPTAGNYPSSSRTPQAPTP--ANLVGPRSAHGTAPVNIAGSR-------TPAALAPTNLSSSRMAPALSGANLTS 2338
Cdd:PRK07003 362 VTGGGAPGGGVPARVAGAVPAPGAraAAAVGASAVPAVTAVTGAAGAalapkaaAAAAATRAEAPPAAPAPPATADRGDD 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2339 PRVPLSAYERvsgrtspllldRARSRTPPSAPSQsrmtsERERAPSPASRMVQAPSQSLLPPAQDRPRSPVPSAFSDQSR 2418
Cdd:PRK07003 442 AADGDAPVPA-----------KANARASADSRCD-----ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPA 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2419 SIAQTTPVAGSQSLSSGTVAKSTSSASdhngmlSGPAPgvshAEGGEPHASTGAQqpSALAVLQPAKERRSSSSSSSSSS 2498
Cdd:PRK07003 506 AVPDARAPAAASREDAPAAAAPPAPEA------RPPTP----AAAAPAARAGGAA--AALDVLRNAGMRVSSDRGARAAA 573
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 460838694 2499 SSSSSSSSsssssssgssssdsegsslPAQPEVALKRVPSPTPVPKeAVREGRPQEPTPAKRKRR 2563
Cdd:PRK07003 574 AAKPAAAP-------------------AAAPKPAAPRVAVQVPTPR-ARAATGDAPPNGAARAEQ 618
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
2154-2558 |
3.19e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.05 E-value: 3.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2154 SMSAAGLAARMSQVPAPVPLMSLRTAPAAnlasripaasaaamNLASARTSAIPASVNLADSRTPAAAAAMNLASPRTAV 2233
Cdd:PRK07764 368 SDDERGLLARLERLERRLGVAGGAGAPAA--------------AAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAP 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2234 APSAvnlADPRTPAASAVNLAGARTPAALAALSLT----GSGTPPTAGNYPSSSRTPQAPTPANLVGPRSAHGTAPVNIA 2309
Cdd:PRK07764 434 APAP---APAPPSPAGNAPAGGAPSPPPAAAPSAQpapaPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2310 GSRT--PAALAP-TNLSSSRMAPALSGANLTSPR---------VPLSAYERVSGRTSPLLLD------------RARSRT 2365
Cdd:PRK07764 511 TLRErwPEILAAvPKRSRKTWAILLPEATVLGVRgdtlvlgfsTGGLARRFASPGNAEVLVTalaeelggdwqvEAVVGP 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2366 PPSAPSQSRMTSERERAPSPASRMVQAPSQSLLPPAQDRPRSPVPSAfSDQSRSIAQTTPVAGSQSLSSGTVAKSTSSAS 2445
Cdd:PRK07764 591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPA-EASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2446 DHNGMLSGPAPGVSHAEGGEPHASTGAQQPSALAvlQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSL 2525
Cdd:PRK07764 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAP--APAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDD 747
|
410 420 430
....*....|....*....|....*....|...
gi 460838694 2526 PAQPEVALKRVPSPTPVPKEAVREGRPQEPTPA 2558
Cdd:PRK07764 748 PPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
379-591 |
4.40e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.58 E-value: 4.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 379 AAIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSSSSESCPPSPQPTKLSRHASSSPESLKPTPAPGSRREiSSSPTSKN 458
Cdd:PRK12678 65 AAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE-AARRGAAR 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 459 RSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWG-KSRSPQRRGRSRSPQRPG 537
Cdd:PRK12678 144 KAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDrRDRREQGDRREERGRRDG 223
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 460838694 538 WSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSR 591
Cdd:PRK12678 224 GDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGG 277
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
2246-2419 |
4.51e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 42.53 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2246 PAASAVNLAGARTPAALAALSLTGSGTPPTAgnyPSSSRTPQAPTPANLVGPRS-AHGTAPVNIAGSRTPAALAPTNLSS 2324
Cdd:PRK07003 375 RVAGAVPAPGARAAAAVGASAVPAVTAVTGA---AGAALAPKAAAAAAATRAEApPAAPAPPATADRGDDAADGDAPVPA 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2325 SRMAPALSGANLTSP-RVPLSAYERVSGRTSPLlldRARSRTPPSAPSQSRMTSERERAPSPASRMVQAPSQSLLPPAQD 2403
Cdd:PRK07003 452 KANARASADSRCDERdAQPPADSGSASAPASDA---PPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP 528
|
170
....*....|....*...
gi 460838694 2404 RPRS--PVPSAFSDQSRS 2419
Cdd:PRK07003 529 APEArpPTPAAAAPAARA 546
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
2229-2563 |
6.69e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.08 E-value: 6.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2229 PRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAAlslTGSGTPPTAGNYPSSSRTPQAPTPANLVGPRSAHGTAPVNI 2308
Cdd:PHA03307 67 PPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAR---EGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGS 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2309 AGSRTPAALAPTNLSSSrmAPALSGANLTSPRVPLSAYERVSGRTSPLLLDRARSRTPPSAPSQSRMTSERERAPSPASR 2388
Cdd:PHA03307 144 PGPPPAASPPAAGASPA--AVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPA 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2389 MVQAPSQsllppAQDRPRSPVPSAFSDQSRSIAQTTPVAGSQSLSSGTVAKSTSSASDHNGMLSGPAPGVSHAEGGEPHA 2468
Cdd:PHA03307 222 PAPGRSA-----ADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSP 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2469 STGAQQPSALAVLQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPAQPEVALKRVPSPTPVPKEAVR 2548
Cdd:PHA03307 297 SPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPS 376
|
330
....*....|....*
gi 460838694 2549 EGRPQEPTPAKRKRR 2563
Cdd:PHA03307 377 SPAASAGRPTRRRAR 391
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
2134-2401 |
9.41e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 41.37 E-value: 9.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2134 QSRIALALTAISLGTARPPPSMSAAGlAARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAIPASVNLA 2213
Cdd:PRK07003 413 KAAAAAAATRAEAPPAAPAPPATADR-GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFE 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2214 DSRTPAAAAAMNLASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSLTGSGTPP-----TAGNYPSSSRTPQA 2288
Cdd:PRK07003 492 PAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAAldvlrNAGMRVSSDRGARA 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460838694 2289 -----PTPANLVGPRSAHGTAPVNIAGSRTPAALAPTNLSSSRMAPALSGANLTSP---------RVPLSAYERVSGRts 2354
Cdd:PRK07003 572 aaaakPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPpwedippddYVPLSADEGFGGP-- 649
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 460838694 2355 plllDRARSRTPPSAPSQSRMtsererAPSPASRMVQAPSQSLLPPA 2401
Cdd:PRK07003 650 ----DDGFVPVFDSGPDDVRV------APKPADAPAPPVDTRPLPPA 686
|
|
| |
