|
Name |
Accession |
Description |
Interval |
E-value |
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
154-986 |
0e+00 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 1002.42 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 154 LQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQ 233
Cdd:pfam10174 1 LQAQLRDLQRENELLRRELDIKESKLGSSMNSIKTFWSPELKKERALRKEEAARISVLKEQYRVTQEENQHLQLTIQALQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 234 DELRIQRDLNQLFQQD--SSSRTGEPCVA--ELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESI 309
Cdd:pfam10174 81 DELRAQRDLNQLLQQDftTSPVDGEDKFStpELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGARDESI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 310 KKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDS 389
Cdd:pfam10174 161 KKLLEMLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPDPAKTKALQTVIEMKDT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 390 KISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKeelsskdaqgeelkkraaglqseig 469
Cdd:pfam10174 241 KISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLK------------------------- 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 470 qvkQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMA 549
Cdd:pfam10174 296 ---QELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLT 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 550 EEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTI 629
Cdd:pfam10174 373 EEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERII 452
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 630 ERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEE 709
Cdd:pfam10174 453 ERLKEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEE 532
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 710 CLKMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQ 789
Cdd:pfam10174 533 CSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQ 612
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 790 VKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQlqdslrkkddrieeleealresvqitaeremvlaqees 869
Cdd:pfam10174 613 MKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQ-------------------------------------- 654
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 870 artnaeKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALL 949
Cdd:pfam10174 655 ------LQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLAAISEKDANIALL 728
|
810 820 830
....*....|....*....|....*....|....*...
gi 2035341231 950 ELSSS-KKKTQEEVAALKREKDRLVQQLKQQTQNRMKL 986
Cdd:pfam10174 729 ELSSSkKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 766
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
398-972 |
2.90e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 100.40 E-value: 2.90e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 398 LRDLEEEIQMLKSNGALSTEEREEEMKQMEVyrshskfMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSR 477
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAE-------LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 478 KDTELLALQTKLETLTNQfsdskqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAG 557
Cdd:COG1196 307 LEERRRELEERLEELEEE-------LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 558 EIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRD 637
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 638 RDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKdsrlktlEIALEQKKEECLKMESQL 717
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL-------LLAGLRGLAGAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 718 KKAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTEvdRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKV 797
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG--RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 798 ANLKHKEQVEkkkSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQ 877
Cdd:COG1196 611 ADARYYVLGD---TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 878 VEELLMAMEKVKQELESMKAklsstQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSS--SK 955
Cdd:COG1196 688 LAEEELELEEALLAEEEEER-----ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEppDL 762
|
570
....*....|....*..
gi 2035341231 956 KKTQEEVAALKREKDRL 972
Cdd:COG1196 763 EELERELERLEREIEAL 779
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
351-983 |
1.50e-19 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 95.59 E-value: 1.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 351 EQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEE--REEEMKQMEV 428
Cdd:PTZ00121 1113 EARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAarKAEEVRKAEE 1192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 429 YRSHSKFMKNKVEQLKEELSSKDA--QGEELKKRAAGLQSEIGQVKQELSRKDTEllalQTKLETLTNQFSDSKQHIEVL 506
Cdd:PTZ00121 1193 LRKAEDARKAEAARKAEEERKAEEarKAEDAKKAEAVKKAEEAKKDAEEAKKAEE----ERNNEEIRKFEEARMAHFARR 1268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 507 KESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGtqagEIHDLKDMLDVKERKVNVLQKKIEnlqEQ 586
Cdd:PTZ00121 1269 QAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK----KADEAKKKAEEAKKKADAAKKKAE---EA 1341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 587 LRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLlQG 666
Cdd:PTZ00121 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK-KA 1420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 667 DLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIAleQKKEECLKMESQLKKAHEATLEARASPEmSDRIQQLEREMAR 746
Cdd:PTZ00121 1421 DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA--KKAEEAKKKAEEAKKADEAKKKAEEAKK-ADEAKKKAEEAKK 1497
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 747 YKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLS 826
Cdd:PTZ00121 1498 KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKN 1577
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 827 DSSQQLQDSLRKKDDRIEELEEALRESVQITAERemvLAQEESARTNAEKQVEEllmamEKVKQELESMKAKLSSTQQSL 906
Cdd:PTZ00121 1578 MALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE---AKKAEEAKIKAEELKKA-----EEEKKKVEQLKKKEAEEKKKA 1649
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2035341231 907 AE--KETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNR 983
Cdd:PTZ00121 1650 EElkKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEEN 1728
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
439-978 |
3.47e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 93.85 E-value: 3.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 439 KVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAA 518
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 519 ILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLK 598
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 599 ERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDL 678
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 679 KEHASSLAsSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTE- 757
Cdd:COG1196 466 AELLEEAA-LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAl 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 758 --------VDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSS 829
Cdd:COG1196 545 aaalqnivVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 830 QQL-QDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAE 908
Cdd:COG1196 625 RTLvAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEE 704
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2035341231 909 KETHLTNLRAERRKHLEEVLEMKQEALLAA----ISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQ 978
Cdd:COG1196 705 EERELAEAEEERLEEELEEEALEEQLEAEReellEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
323-973 |
5.56e-19 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 93.21 E-value: 5.56e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 323 AKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENN------MLREEMhRRFENAPDSAKTKALQTVIEMKDSKISSMER 396
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREkaeryqALLKEK-REYEGYELLKEKEALERQKEAIERQLASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 397 GLRDLEEEIQML-KSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSS-------KDAQGEELKKRAAGLQSEI 468
Cdd:TIGR02169 252 ELEKLTEEISELeKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASlersiaeKERELEDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 469 GQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDM 548
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 549 AEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERT 628
Cdd:TIGR02169 412 QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 629 IERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQ--GDLSEKEASLLD------------------------LKEH- 681
Cdd:TIGR02169 492 LAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAqlGSVGERYATAIEvaagnrlnnvvveddavakeaielLKRRk 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 682 -------------ASSLASSGLKKDS------------------------------------------RLKTLEIALEQK 706
Cdd:TIGR02169 572 agratflplnkmrDERRDLSILSEDGvigfavdlvefdpkyepafkyvfgdtlvvedieaarrlmgkyRMVTLEGELFEK 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 707 KEECLKMESQLKKAHEATLEARAS-PEMSDRIQQLEREMARYKDESSKAQTEVDRLL-----------EILKEVENEKND 774
Cdd:TIGR02169 652 SGAMTGGSRAPRGGILFSRSEPAElQRLRERLEGLKRELSSLQSELRRIENRLDELSqelsdasrkigEIEKEIEQLEQE 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 775 KDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRR------EDSLSDSS-QQLQDSLRKKDDRIEELE 847
Cdd:TIGR02169 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEealndlEARLSHSRiPEIQAELSKLEEEVSRIE 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 848 EALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEK-------ETHLTNLRAER 920
Cdd:TIGR02169 812 ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELeaalrdlESRLGDLKKER 891
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 2035341231 921 RKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLV 973
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
261-986 |
1.29e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 92.04 E-value: 1.29e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 261 ELTEENFQRL---HAEHERQAKELFLLRKTLEEMelrIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLA 337
Cdd:TIGR02168 182 ERTRENLDRLediLNELERQLKSLERQAEKAERY---KELKAELRELELALLVLRLEELREELEELQEELKEAEEELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 338 EAEMHVhhLESLLEQKEKENNMLREEMHrrfenapdsaktkALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTE 417
Cdd:TIGR02168 259 TAELQE--LEEKLEELRLEVSELEEEIE-------------ELQKELYALANEISRLEQQKQILRERLANLERQLEELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 418 EREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFS 497
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 498 DSKQHIEVLKESLT-----AKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERK 572
Cdd:TIGR02168 404 RLEARLERLEDRRErlqqeIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 573 VNVLQKKIENLQEQLRDKEKQMSSLKERVKSlQADTTNTDTALTTLEEALADKERTIE-----RLKEQRDRDEREKQEEI 647
Cdd:TIGR02168 484 LAQLQARLDSLERLQENLEGFSEGVKALLKN-QSGLSGILGVLSELISVDEGYEAAIEaalggRLQAVVVENLNAAKKAI 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 648 DTYKKDLKDLKEKVSLLQGDLSEKEASLLDLK---EHASSLASSGLKKDSRLK--------------TLEIALEQKKEEC 710
Cdd:TIGR02168 563 AFLKQNELGRVTFLPLDSIKGTEIQGNDREILkniEGFLGVAKDLVKFDPKLRkalsyllggvlvvdDLDNALELAKKLR 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 711 LKM-----ESQLKKAHEATLEARASPEMSD-----RIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIA 780
Cdd:TIGR02168 643 PGYrivtlDGDLVRPGGVITGGSAKTNSSIlerrrEIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 781 ELEsltsRQVKDQNKKVANLKHKEqvekkksaqmlEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAER 860
Cdd:TIGR02168 723 ELS----RQISALRKDLARLEAEV-----------EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 861 EMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAIS 940
Cdd:TIGR02168 788 EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 2035341231 941 EKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKL 986
Cdd:TIGR02168 868 IEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL 913
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
203-979 |
2.02e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 91.27 E-value: 2.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 203 DEASKITIWKEQYRVVQEENQHMQMTIQALQDELR-IQRDLNQLFQQdsssrtgepcvAELTEEnFQRLHAEHERQAKEL 281
Cdd:TIGR02168 162 EEAAGISKYKERRKETERKLERTRENLDRLEDILNeLERQLKSLERQ-----------AEKAER-YKELKAELRELELAL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 282 FLLRktleemelrIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTR-RLAEAEMHVHHLES-LLEQKEKENNM 359
Cdd:TIGR02168 230 LVLR---------LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRlEVSELEEEIEELQKeLYALANEISRL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 360 LREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSN-----GALSTEEREEEM---------KQ 425
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEElesleAELEELEAELEElesrleeleEQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 426 MEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKD-----TELLALQTKLETLTNQFSDSK 500
Cdd:TIGR02168 381 LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElkelqAELEELEEELEELQEELERLE 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 501 QHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQ---AGEIHDLKDMLDVKER----KV 573
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQsglSGILGVLSELISVDEGyeaaIE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 574 NVLQKKI-----ENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQ---- 644
Cdd:TIGR02168 541 AALGGRLqavvvENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsy 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 645 --------EEIDTYKKDLKDLKEKVSL--LQGDLSEKEASLLdlkEHASSLASSGLKKDSRLKTLEIALEQKKEECLKME 714
Cdd:TIGR02168 621 llggvlvvDDLDNALELAKKLRPGYRIvtLDGDLVRPGGVIT---GGSAKTNSSILERRREIEELEEKIEELEEKIAELE 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 715 SQLKKAHEATLEA--------RASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESL- 785
Cdd:TIGR02168 698 KALAELRKELEELeeeleqlrKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEl 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 786 --TSRQVKDQNKKVANLKHkeqvEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMV 863
Cdd:TIGR02168 778 aeAEAEIEELEAQIEQLKE----ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 864 LAQeesartnAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKD 943
Cdd:TIGR02168 854 IES-------LAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQ 926
|
810 820 830 840
....*....|....*....|....*....|....*....|....*..
gi 2035341231 944 ANIALLE-----------LSSSKKKTQEEVAALKREKDRLVQQLKQQ 979
Cdd:TIGR02168 927 LELRLEGlevridnlqerLSEEYSLTLEEAEALENKIEDDEEEARRR 973
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
736-989 |
2.28e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.52 E-value: 2.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 736 RIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQvEKKKSAQML 815
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ-DIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 816 EEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESM 895
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 896 KAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQ 975
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250
....*....|....
gi 2035341231 976 LKQQTQNRMKLMAD 989
Cdd:COG1196 472 AALLEAALAELLEE 485
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
265-976 |
5.89e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 80.11 E-value: 5.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 265 ENFQRLHAEHErQAKELFLLRKTLEEMELRIETQKqtLNARDESIKKLLEMLQSKglsakaTEEDHERTRRLAEAEMHVH 344
Cdd:TIGR02169 198 QQLERLRRERE-KAERYQALLKEKREYEGYELLKE--KEALERQKEAIERQLASL------EEELEKLTEEISELEKRLE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 345 HLESLLEQKEKENNMLREEMHRRFEnapdsAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMK 424
Cdd:TIGR02169 269 EIEQLLEELNKKIKDLGEEEQLRVK-----EKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 425 QMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIE 504
Cdd:TIGR02169 344 EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELA 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 505 VLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQ 584
Cdd:TIGR02169 424 DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 585 EQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEAL----------------ADKERTIERLKEQRD----------- 637
Cdd:TIGR02169 504 ERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIevaagnrlnnvvveddAVAKEAIELLKRRKAgratflplnkm 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 638 RDER----------------------EKQEEIDTYKKDLKDLKEKVSL------------LQGDLSEKEASLL---DLKE 680
Cdd:TIGR02169 584 RDERrdlsilsedgvigfavdlvefdPKYEPAFKYVFGDTLVVEDIEAarrlmgkyrmvtLEGELFEKSGAMTggsRAPR 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 681 HASSLASSGLKKDSRLKTLEIALEQKKEECL-KMESQLKKAHEATLEARASPEM----SDRIQQLEREMARYKDESSKAQ 755
Cdd:TIGR02169 664 GGILFSRSEPAELQRLRERLEGLKRELSSLQsELRRIENRLDELSQELSDASRKigeiEKEIEQLEQEEEKLKERLEELE 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 756 TEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRR-EDSLSDSSQQLQD 834
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRiEARLREIEQKLNR 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 835 SLRKKDDRIEELEEALRESVQITAEREMVLAQEEsartNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLT 914
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE----NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2035341231 915 NLR---------AERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQL 976
Cdd:TIGR02169 900 ELErkieeleaqIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
452-853 |
7.52e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 76.65 E-value: 7.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 452 AQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRL 531
Cdd:TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 532 EEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDvkerkvnvlQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNT 611
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLS---------HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 612 DTALTTLEEALADKERTIERLKEQRDrDEREKQEEIDTYKKDlkdlkekvslLQGDLSEKEASLLDLKEHASSLASSGLK 691
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQRIDLKEQIK-SIEKEIENLNGKKEE----------LEEELEELEAALRDLESRLGDLKKERDE 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 692 KDSRLKTLEIALEQkkeecLKMESQLKKAHEATLEARASpEMSDRIQQLEREMARYKDESSKaqtevdrlLEILKEVENE 771
Cdd:TIGR02169 894 LEAQLRELERKIEE-----LEAQIEKKRKRLSELKAKLE-ALEEELSEIEDPKGEDEEIPEE--------ELSLEDVQAE 959
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 772 KNDKDKKIAELESLTSRQVKDqnkkvanlkhkeqvekkksaqmLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALR 851
Cdd:TIGR02169 960 LQRVEEEIRALEPVNMLAIQE----------------------YEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017
|
..
gi 2035341231 852 ES 853
Cdd:TIGR02169 1018 EV 1019
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
230-848 |
8.26e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 8.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 230 QALQDELRiQRDLNQLFQQDsssrtgepcvaELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESI 309
Cdd:COG1196 216 RELKEELK-ELEAELLLLKL-----------RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 310 KKLLEMLQSKGLSAKATEEDHERTR-RLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENApdsaktKALQTVIEMKD 388
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEeRRRELEERLEELEEELAELEEELEELEEELEELEEEL------EEAEEELEEAE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 389 SKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEI 468
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 469 GQVKQELSRKDTELLALQTKLETLTNQfsdskqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQD- 547
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLEL-------LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGv 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 548 -MAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIE-NLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADK 625
Cdd:COG1196 511 kAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAaALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAA 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 626 ERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSL-------------LQGDLSEKEASLLDLKEHASSLASSGLKK 692
Cdd:COG1196 591 ALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVaarleaalrravtLAGRLREVTLEGEGGSAGGSLTGGSRREL 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 693 DSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARAspemsdRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEK 772
Cdd:COG1196 671 LAALLEAEAELEELAERLAEEELELEEALLAEEEEER------ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEE 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 773 NDKDKKIAELESLTSRQVKDQNKKVANLKhkeqvekKKSAQM----------LEEARRREDSLSDSSQQLQDSLRKKDDR 842
Cdd:COG1196 745 EELLEEEALEELPEPPDLEELERELERLE-------REIEALgpvnllaieeYEELEERYDFLSEQREDLEEARETLEEA 817
|
....*.
gi 2035341231 843 IEELEE 848
Cdd:COG1196 818 IEEIDR 823
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
389-970 |
9.81e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 72.36 E-value: 9.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 389 SKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEI 468
Cdd:TIGR04523 96 DKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENEL 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 469 GQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIE---VLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQI 545
Cdd:TIGR04523 176 NLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQknkSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQL 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 546 QDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQ-----MSSLKERVKSLQADTTNTDTALTTLEE 620
Cdd:TIGR04523 256 NQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEIQNQISQNNK 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 621 ALADKERTIERLKEQRDRDEREKQEeidtykkdlkdlkekvslLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLE 700
Cdd:TIGR04523 336 IISQLNEQISQLKKELTNSESENSE------------------KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLE 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 701 IALEQKKEECLKMESQLKKAHEATlearaspemsdriQQLEREMARYKDESSKAQTEVDRLleilkevENEKNDKDKKIA 780
Cdd:TIGR04523 398 SKIQNQEKLNQQKDEQIKKLQQEK-------------ELLEKEIERLKETIIKNNSEIKDL-------TNQDSVKELIIK 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 781 ELESLTSRQvKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAER 860
Cdd:TIGR04523 458 NLDNTRESL-ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEK 536
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 861 EMVLAQEES---------ARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMK 931
Cdd:TIGR04523 537 ESKISDLEDelnkddfelKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLE 616
|
570 580 590
....*....|....*....|....*....|....*....
gi 2035341231 932 QEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKD 970
Cdd:TIGR04523 617 KELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIK 655
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
299-881 |
1.17e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 72.40 E-value: 1.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 299 KQTLNARDESIKKLLemlqskglsaKATEEDHERTR----RLAEAEMHVHHLESLLEQKEKENNMLREEMHRrfenapds 374
Cdd:PRK03918 171 IKEIKRRIERLEKFI----------KRTENIEELIKekekELEEVLREINEISSELPELREELEKLEKEVKE-------- 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 375 akTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSngalSTEEREEEMKQMEVYRSHSKFMKNKVEQ---LKEELSSKD 451
Cdd:PRK03918 233 --LEELKEEIEELEKELESLEGSKRKLEEKIRELEE----RIEELKKEIEELEEKVKELKELKEKAEEyikLSEFYEEYL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 452 AQGEELKKRAAGLQSEIGQVKQELSrkdtELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEqRAAILQTEVDALRLRL 531
Cdd:PRK03918 307 DELREIEKRLSRLEEEINGIEERIK----ELEEKEERLEELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKRL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 532 EEKEtmLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQ-------------------EQLRDKEK 592
Cdd:PRK03918 382 TGLT--PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcgrelteehrkELLEEYTA 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 593 QMSSLKERVKSLQADTTNTDTALTTLEEALAdKERTIERLKEQRD--RDEREKQEEIDtyKKDLKDLKEKVSLLQGDLSE 670
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELEKVLK-KESELIKLKELAEqlKELEEKLKKYN--LEELEKKAEEYEKLKEKLIK 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 671 KEASLLDLKEHASSLAssGLKKdsRLKTLEIALEQKKEECLKMESQLKKAHEATLEaraspEMSDRIQQLE--------- 741
Cdd:PRK03918 537 LKGEIKSLKKELEKLE--ELKK--KLAELEKKLDELEEELAELLKELEELGFESVE-----ELEERLKELEpfyneylel 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 742 ----REMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSrqvKDQNKKVANLKHKEQVEKKKSAQMLEE 817
Cdd:PRK03918 608 kdaeKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS---EEEYEELREEYLELSRELAGLRAELEE 684
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2035341231 818 ARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEEL 881
Cdd:PRK03918 685 LEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGEI 748
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
465-846 |
1.56e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.40 E-value: 1.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 465 QSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 544
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 545 IQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAD 624
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 625 KERTIERLKEQRdrdeREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALE 704
Cdd:TIGR02168 836 TERRLEDLEEQI----EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 705 QKKEECLKMESQLKKAHEATLEARAspemsDRIQQLEREMARYKDEsskaqtevdrlleiLKEVENEKNDKDKKIAELEs 784
Cdd:TIGR02168 912 ELRRELEELREKLAQLELRLEGLEV-----RIDNLQERLSEEYSLT--------------LEEAEALENKIEDDEEEAR- 971
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2035341231 785 ltsRQVKDQNKKVA-----NLKHKEQVEKKKsaQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEEL 846
Cdd:TIGR02168 972 ---RRLKRLENKIKelgpvNLAAIEEYEELK--ERYDFLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
434-931 |
2.38e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 71.25 E-value: 2.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 434 KFMKNKVEQLKEELSSKdaqgEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQH---IEVLKESL 510
Cdd:PRK03918 172 KEIKRRIERLEKFIKRT----ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELkeeIEELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 511 TAKEQRAAILQTEVDALRLRLEEKETMLN------KKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQ 584
Cdd:PRK03918 248 ESLEGSKRKLEEKIRELEERIEELKKEIEeleekvKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 585 EQLRD---KEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKER-----------TIERLKEQRDRDEREKQEeidtY 650
Cdd:PRK03918 328 ERIKEleeKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEElerlkkrltglTPEKLEKELEELEKAKEE----I 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 651 KKDLKDLKEKVSLLQGDLSEKEASLLDLK---------------EHASSLASSGLKKDSRLKTLEIALEQKKEECLKMES 715
Cdd:PRK03918 404 EEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELR 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 716 QLKKAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTE------------------VDRLLEILKEVENEKNDKDK 777
Cdd:PRK03918 484 ELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEeyeklkekliklkgeiksLKKELEKLEELKKKLAELEK 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 778 KIAELEsltsRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQIT 857
Cdd:PRK03918 564 KLDELE----EELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETE 639
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2035341231 858 AEREMVLAQ-EESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMK 931
Cdd:PRK03918 640 KRLEELRKElEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
272-1024 |
2.50e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 71.71 E-value: 2.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 272 AEHERQAKELFLLRKTleEMELRIETQKQTLNARD-ESIKKLLEMLQSKGLSaKATEEDHERTRRLAEAEMHVHHLESLL 350
Cdd:PTZ00121 1145 ARKAEDAKRVEIARKA--EDARKAEEARKAEDAKKaEAARKAEEVRKAEELR-KAEDARKAEAARKAEEERKAEEARKAE 1221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 351 EQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEiQMLKSNGALSTEE--REEEMKQMEV 428
Cdd:PTZ00121 1222 DAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE-EARKADELKKAEEkkKADEAKKAEE 1300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 429 YRSHSKFMKN-----KVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHI 503
Cdd:PTZ00121 1301 KKKADEAKKKaeeakKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKA 1380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 504 EVLKESltAKEQRAAilqtevDALRLRLEEKETMLN--KKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKvnvlqKKIE 581
Cdd:PTZ00121 1381 DAAKKK--AEEKKKA------DEAKKKAEEDKKKADelKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA-----KKAD 1447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 582 NLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKV 661
Cdd:PTZ00121 1448 EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEA 1527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 662 SLLQGDLSEKEASLLDLKEHASSL-ASSGLKKDSRLKTLEIA--LEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQ 738
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAEEKKKADELkKAEELKKAEEKKKAEEAkkAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKM 1607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 739 QLER----EMARYKDESSKAQTEVDRLLEILKEVENE---KNDKDKKIAELESLTSRQVK---DQNKKVANLKHKEQVEK 808
Cdd:PTZ00121 1608 KAEEakkaEEAKIKAEELKKAEEEKKKVEQLKKKEAEekkKAEELKKAEEENKIKAAEEAkkaEEDKKKAEEAKKAEEDE 1687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 809 KKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKV 888
Cdd:PTZ00121 1688 KKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEE 1767
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 889 KQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEAllaaisekdANIALLELSSSKKKTQEEVAALKRE 968
Cdd:PTZ00121 1768 KKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEG---------GKEGNLVINDSKEMEDSAIKEVADS 1838
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 2035341231 969 KDRLVQQLKQQTQNRMKLMADNYEDDHFRSSRSNQTNHKpspDQIIQPLLELDQNR 1024
Cdd:PTZ00121 1839 KNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLK---EDDEEEIEEADEIE 1891
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
398-929 |
3.24e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 70.84 E-value: 3.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 398 LRDLEEEIQMLKSNG------ALSTEERE--EEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIG 469
Cdd:PRK02224 189 LDQLKAQIEEKEEKDlherlnGLESELAEldEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 470 QVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMA 549
Cdd:PRK02224 269 ETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLR 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 550 EEkgtqageIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQAD----TTNTDTALTTLEEALADK 625
Cdd:PRK02224 349 ED-------ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERfgdaPVDLGNAEDFLEELREER 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 626 ERTIERLKEQR------DRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTL 699
Cdd:PRK02224 422 DELREREAELEatlrtaRERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 700 EIALE-----QKKEECLKMESQLKKAHEATLEAR--ASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEK 772
Cdd:PRK02224 502 EDLVEaedriERLEERREDLEELIAERRETIEEKreRAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKL 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 773 NDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKksAQMLEEARRREDSLSDSSQQLQDSLrkKDDRIEELEEALRE 852
Cdd:PRK02224 582 AELKERIESLERIRTLLAAIADAEDEIERLREKREAL--AELNDERRERLAEKRERKRELEAEF--DEARIEEAREDKER 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 853 SVQITAEREMVLAQEESARTNAEKQ---VEELLMAMEKVKQELESMKAK---LSSTQQSLAEKETHLTNLRAERRKHLEE 926
Cdd:PRK02224 658 AEEYLEQVEEKLDELREERDDLQAEigaVENELEELEELRERREALENRveaLEALYDEAEELESMYGDLRAELRQRNVE 737
|
...
gi 2035341231 927 VLE 929
Cdd:PRK02224 738 TLE 740
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
384-898 |
4.92e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 70.48 E-value: 4.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 384 IEMKDSKISSMERGLRDLEEEIQMLKSNgalsTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAG 463
Cdd:PRK03918 202 LEEVLREINEISSELPELREELEKLEKE----VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 464 LQSEIGQVKqELSRKDTELLalqtKLETLTNQFSDSKQHIEVLKESLtakEQRAAILQTEVDalrlRLEEKETMLNKKTK 543
Cdd:PRK03918 278 LEEKVKELK-ELKEKAEEYI----KLSEFYEEYLDELREIEKRLSRL---EEEINGIEERIK----ELEEKEERLEELKK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 544 QIQDMAEEKGtQAGEIHDLKDMLDVKERKVNVLQKKIENLQeqLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALA 623
Cdd:PRK03918 346 KLKELEKRLE-ELEERHELYEEAKAKKEELERLKKRLTGLT--PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIK 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 624 DKERTIERLKE--------QRDRDEREKQEEIDTYKKDlkdlkekVSLLQGDLSEKEASLLDLKEHASSLASSgLKKDSR 695
Cdd:PRK03918 423 ELKKAIEELKKakgkcpvcGRELTEEHRKELLEEYTAE-------LKRIEKELKEIEEKERKLRKELRELEKV-LKKESE 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 696 LKTLEIALEQKKEeclkMESQLKKAHEATLEARASP--EMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKN 773
Cdd:PRK03918 495 LIKLKELAEQLKE----LEEKLKKYNLEELEKKAEEyeKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEE 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 774 DKDKKIAELESLTSRQVKDQNKKVANLK--HKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALR 851
Cdd:PRK03918 571 ELAELLKELEELGFESVEELEERLKELEpfYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE 650
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 2035341231 852 ESVQITAERE------------MVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAK 898
Cdd:PRK03918 651 ELEKKYSEEEyeelreeylelsRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKA 709
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
690-979 |
5.37e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 5.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 690 LKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASpemSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVE 769
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEEL---EAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 770 NEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQmLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEA 849
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE-LEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 850 LRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLE 929
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 2035341231 930 MKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQ 979
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
382-899 |
7.37e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 69.66 E-value: 7.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 382 TVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRA 461
Cdd:TIGR04523 204 SNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 462 AGLQSEIGQVKQELS------------RKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRL 529
Cdd:TIGR04523 284 KELEKQLNQLKSEISdlnnqkeqdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQR 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 530 RLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTT 609
Cdd:TIGR04523 364 ELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIK 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 610 NTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEK---EASLLDLKEHASSLA 686
Cdd:TIGR04523 444 DLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKkelEEKVKDLTKKISSLK 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 687 SSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAheatlearaspEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILK 766
Cdd:TIGR04523 524 EKIEKLESEKKEKESKISDLEDELNKDDFELKKE-----------NLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELID 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 767 EVENEKNDKDKKIAELESLTS------RQVKDQNKKVANLKHKEQVEKKKSAQMLE----EARRREDSLSDSSQQLQDSL 836
Cdd:TIGR04523 593 QKEKEKKDLIKEIEEKEKKISslekelEKAKKENEKLSSIIKNIKSKKNKLKQEVKqikeTIKEIRNKWPEIIKKIKESK 672
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2035341231 837 RKKDDRIEELEEALRESVQITAER--EMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKL 899
Cdd:TIGR04523 673 TKIDDIIELMKDWLKELSLHYKKYitRMIRIKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNF 737
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
439-758 |
1.42e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.94 E-value: 1.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 439 KVEQLKEELsskdaqgEELKKRAAGLQSEIGQVKQELSRKDTE------LLALQTKLE-----TLTNQFSDSKQHIEVLK 507
Cdd:TIGR02169 171 KKEKALEEL-------EEVEENIERLDLIIDEKRQQLERLRRErekaerYQALLKEKReyegyELLKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 508 ESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQ--------AGEIHDLKDMLDVKERKVNVLQKK 579
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigelEAEIASLERSIAEKERELEDAEER 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 580 IENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERL--KEQRDRDE-REKQEEIDTYKKDLKD 656
Cdd:TIGR02169 324 LAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVdkEFAETRDElKDYREKLEKLKREINE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 657 LKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARAS-PEMSD 735
Cdd:TIGR02169 404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEyDRVEK 483
|
330 340
....*....|....*....|...
gi 2035341231 736 RIQQLEREMARYKDESSKAQTEV 758
Cdd:TIGR02169 484 ELSKLQRELAEAEAQARASEERV 506
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
154-978 |
3.97e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.79 E-value: 3.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 154 LQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALrkdEASKITIWKEQYRVvQEENQHMQMTIQALQ 233
Cdd:TIGR02169 189 LDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEAL---ERQKEAIERQLASL-EEELEKLTEEISELE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 234 DEL-RIQRDLNQLFQQdsssrtgepcVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKL 312
Cdd:TIGR02169 265 KRLeEIEQLLEELNKK----------IKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 313 LEmlQSKGLSAKATEEDHER---TRRLAEAEMHVHHLESLLEQKEKENNMLREEmhrrfenapdsakTKALQTVIEMKDS 389
Cdd:TIGR02169 335 LA--EIEELEREIEEERKRRdklTEEYAELKEELEDLRAELEEVDKEFAETRDE-------------LKDYREKLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 390 KISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIG 469
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 470 QVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTA-----------KEQRAAILQ-------------TEVD 525
Cdd:TIGR02169 480 RVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGvhgtvaqlgsvGERYATAIEvaagnrlnnvvveDDAV 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 526 ALRLRLEEKETMLNKKT----KQIQDMAEEKG--TQAGEIHDLKDMLDVKERKVNVL---------------------QK 578
Cdd:TIGR02169 560 AKEAIELLKRRKAGRATflplNKMRDERRDLSilSEDGVIGFAVDLVEFDPKYEPAFkyvfgdtlvvedieaarrlmgKY 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 579 KIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDER---EKQEEIDTYKKDLK 655
Cdd:TIGR02169 640 RMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENrldELSQELSDASRKIG 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 656 DLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLkkaheATLEARASPEmsd 735
Cdd:TIGR02169 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL-----NDLEARLSHS--- 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 736 RIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELEsltsRQVKDQNKKVANLKHKEQVEKKKSAQML 815
Cdd:TIGR02169 792 RIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ----EQRIDLKEQIKSIEKEIENLNGKKEELE 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 816 EEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMvlaqeesartnAEKQVEELLMAMEKVKQELESM 895
Cdd:TIGR02169 868 EELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK-----------KRKRLSELKAKLEALEEELSEI 936
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 896 KAKLSSTQQSLAEkETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQ 975
Cdd:TIGR02169 937 EDPKGEDEEIPEE-ELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
...
gi 2035341231 976 LKQ 978
Cdd:TIGR02169 1016 KRE 1018
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
488-1032 |
1.32e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.83 E-value: 1.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 488 KLETLTNQFSDSKQHIE-VLKESLTAKEQ-RAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDM 565
Cdd:PRK02224 163 KLEEYRERASDARLGVErVLSDQRGSLDQlKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 566 LDVKERK---VNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALttlEEALADKERT---IERLKEQRDRD 639
Cdd:PRK02224 243 LEEHEERreeLETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEER---DDLLAEAGLDdadAEAVEARREEL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 640 EREKQEeidtykkdlkdlkekvslLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLeialeqkKEECLKMESQLKK 719
Cdd:PRK02224 320 EDRDEE------------------LRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL-------REEAAELESELEE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 720 AHEATLEARaspemsDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELEsltsrqvkdqnkkvAN 799
Cdd:PRK02224 375 AREAVEDRR------EEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELE--------------AT 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 800 LKHKEQVeKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARtNAEKQVE 879
Cdd:PRK02224 435 LRTARER-VEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLV-EAEDRIE 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 880 ELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKK-- 957
Cdd:PRK02224 513 RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESle 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 958 ----TQEEVAALKREKDRLVQQLKQQ----TQNRMKL---------MADNYEDDHFRSSRSNQTNHKPSPDQIIQPLLEL 1020
Cdd:PRK02224 593 rirtLLAAIADAEDEIERLREKREALaelnDERRERLaekrerkreLEAEFDEARIEEAREDKERAEEYLEQVEEKLDEL 672
|
570
....*....|..
gi 2035341231 1021 DQNRSKLKLYIG 1032
Cdd:PRK02224 673 REERDDLQAEIG 684
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
437-972 |
2.92e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 64.68 E-value: 2.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 437 KNKVEQLKEELSSKDAQgeELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLtnqfsdskqhievlKESLTAKEQR 516
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEK--DLHERLNGLESELAELDEEIERYEEQREQARETRDEA--------------DEVLEEHEER 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 517 AAILQT---EVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVK-------ERKVNVLQKKIENLQEQ 586
Cdd:PRK02224 250 REELETleaEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDdadaeavEARREELEDRDEELRDR 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 587 LRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRdRDEREKQEEIDTYKKDLKDLKEKVSLLQG 666
Cdd:PRK02224 330 LEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAV-EDRREEIEELEEEIEELRERFGDAPVDLG 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 667 DLSEKEASLLDLKEHASslassglkkdSRLKTLEIALEQkkeeclkMESQLKKAhEATLEARASPEMSDRIqqlerEMAR 746
Cdd:PRK02224 409 NAEDFLEELREERDELR----------EREAELEATLRT-------ARERVEEA-EALLEAGKCPECGQPV-----EGSP 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 747 YKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESL--TSRQVKDQNKKVANLkhKEQVEKKKSAqmLEEARRREDS 824
Cdd:PRK02224 466 HVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLveAEDRIERLEERREDL--EELIAERRET--IEEKRERAEE 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 825 LSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKqVEELLMAMEKVKQELESMKAKLSSTQQ 904
Cdd:PRK02224 542 LRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIERLREKREALAE 620
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2035341231 905 SLAEKETHLTNLRaERRKHLEEvlEMKQEALLAAISEKD------ANIA--LLELSSSKKKTQEEVAALKREKDRL 972
Cdd:PRK02224 621 LNDERRERLAEKR-ERKRELEA--EFDEARIEEAREDKEraeeylEQVEekLDELREERDDLQAEIGAVENELEEL 693
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
455-645 |
3.41e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.24 E-value: 3.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 455 EELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEK 534
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 535 ETMLNKKTKQIQDMAEEKGTQ----AGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTN 610
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190
....*....|....*....|....*....|....*
gi 2035341231 611 TDTALTTLEEALADKERTIERLKEQRDRDEREKQE 645
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAE 217
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
277-597 |
4.39e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 4.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 277 QAKELFLLRKTLEEMELRIETQKQTLNArdesIKKLLEMLQSKGLSAKATEEDHERTRRLAEaemhvhhlESLLEQKEKE 356
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAE----LRKELEELEEELEQLRKELEELSRQISALR--------KDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 357 NNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQmlKSNGALSTEEREEEMKQMEVYRSHSKF- 435
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE--QLKEELKALREALDELRAELTLLNEEAa 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 436 -MKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKE 514
Cdd:TIGR02168 821 nLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 515 QRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDL-KDMLDVKERKVNVLQKKIENLQEQLRDKEKQ 593
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
....
gi 2035341231 594 MSSL 597
Cdd:TIGR02168 981 IKEL 984
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
392-978 |
2.03e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 62.06 E-value: 2.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 392 SSMERGLRDLEEEIQMLKS-----NGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQS 466
Cdd:pfam15921 220 SAISKILRELDTEISYLKGrifpvEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQS 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 467 EIGQVKQELSRKDTELLALQTKLETLTNQFSDSkqhievLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQ 546
Cdd:pfam15921 300 QLEIIQEQARNQNSMYMRQLSDLESTVSQLRSE------LREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESG 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 547 DMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKK-------IENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTle 619
Cdd:pfam15921 374 NLDDQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMA-- 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 620 eALADKERTIERLKEQRDRDEREKQ------EEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASS---GL 690
Cdd:pfam15921 452 -AIQGKNESLEKVSSLTAQLESTKEmlrkvvEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRvdlKL 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 691 KKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPE-MSDRIQQLEREMARYKDESSKAQTEV-DRLLEiLKEV 768
Cdd:pfam15921 531 QELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIEnMTQLVGQHGRTAGAMQVEKAQLEKEInDRRLE-LQEF 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 769 ENEKNDKDKKIAELESLTS----RQVKDQNKKVANLKHKEQVEKKKSaQMLEE---ARRREDSLSDSSQQLQDSLRKKDD 841
Cdd:pfam15921 610 KILKDKKDAKIRELEARVSdlelEKVKLVNAGSERLRAVKDIKQERD-QLLNEvktSRNELNSLSEDYEVLKRNFRNKSE 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 842 RIEELEEALRESVQiTAEREmvLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERR 921
Cdd:pfam15921 689 EMETTTNKLKMQLK-SAQSE--LEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKH 765
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 2035341231 922 KHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQ 978
Cdd:pfam15921 766 FLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAE 822
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
150-870 |
3.86e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 61.29 E-value: 3.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 150 TIMDLQTQLKEVLRENDLLrKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTI 229
Cdd:pfam15921 111 SVIDLQTKLQEMQMERDAM-ADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEI 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 230 QALQDELRiQRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKELFLLRKTLE--------EMELRIETQK-- 299
Cdd:pfam15921 190 RSILVDFE-EASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEalksesqnKIELLLQQHQdr 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 300 --QTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAE--MHVHHLESLLEQKEKENNMLREEmHRRFENAPDSA 375
Cdd:pfam15921 269 ieQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQnsMYMRQLSDLESTVSQLRSELREA-KRMYEDKIEEL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 376 KTKALQTVIEMKDSKIS----SMERGlrDLEEEIQMLKSNgaLSTEEREEEMKQMEVYRSHSKFMKNK--VEQLKEELSS 449
Cdd:pfam15921 348 EKQLVLANSELTEARTErdqfSQESG--NLDDQLQKLLAD--LHKREKELSLEKEQNKRLWDRDTGNSitIDHLRRELDD 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 450 KDAQGEELKKRAAGLQSEI-GQVKQELSRKDTELLALQtKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALR 528
Cdd:pfam15921 424 RNMEVQRLEALLKAMKSECqGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLT 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 529 LRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDmldvKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQ--A 606
Cdd:pfam15921 503 ASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKN----EGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTqlV 578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 607 DTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEeidtykkdlkdlkekvsllqGDLSEKEASLLDLKEHASSLA 686
Cdd:pfam15921 579 GQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKD--------------------AKIRELEARVSDLELEKVKLV 638
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 687 SSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASpeMSDRIQQLEREMARYKDESSKAQTEVDRLLEILK 766
Cdd:pfam15921 639 NAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRN--FRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLK 716
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 767 EVENEKNDKDK-----------KIAELESLTSR-QVKDQNKKVANL-KHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQ 833
Cdd:pfam15921 717 SMEGSDGHAMKvamgmqkqitaKRGQIDALQSKiQFLEEAMTNANKeKHFLKEEKNKLSQELSTVATEKNKMAGELEVLR 796
|
730 740 750
....*....|....*....|....*....|....*...
gi 2035341231 834 DSLRKKDDRIEELEEAL-RESVQITAEREMVLAQEESA 870
Cdd:pfam15921 797 SQERRLKEKVANMEVALdKASLQFAECQDIIQRQEQES 834
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
193-746 |
7.22e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 7.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 193 ELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELR-IQRDLNQLFQQDSSSRTGepcvAELTEENFQRLH 271
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYeLLAELARLEQDIARLEER----RRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 272 AEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEED-HERTRRLAEAEMHVHHLESLL 350
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEElEELAEELLEALRAAAELAAQL 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 351 EQKEK--ENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEmkqmev 428
Cdd:COG1196 403 EELEEaeEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE------ 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 429 yrshskfmkNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLAlqtklETLTNQFSDSKQHIEVLKE 508
Cdd:COG1196 477 ---------AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA-----GAVAVLIGVEAAYEAALEA 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 509 SLTAKEQRaAILQTEVDALRLRLEEKETMLNKKT-----KQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENL 583
Cdd:COG1196 543 ALAAALQN-IVVEDDEVAAAAIEYLKAAKAGRATflpldKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 584 QEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDtykkDLKDLKEKVSL 663
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE----RLAEEELELEE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 664 LQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARAspEMSDRIQQLERE 743
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE--ELERELERLERE 775
|
...
gi 2035341231 744 MAR 746
Cdd:COG1196 776 IEA 778
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
265-988 |
7.37e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 60.37 E-value: 7.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 265 ENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKllEMLQSKGLSAKATEEDHERTRRLAEAEMHVH 344
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKE--KKLQEEELKLLAKEEEELKSELLKLERRKVD 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 345 HLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMK 424
Cdd:pfam02463 312 DEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAK 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 425 QMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIE 504
Cdd:pfam02463 392 LKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 505 VLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQ-----------DMAEEKGTQAGEIHDLKDMLDVKERKV 573
Cdd:pfam02463 472 DLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLalikdgvggriISAHGRLGDLGVAVENYKVAISTAVIV 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 574 NVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKD 653
Cdd:pfam02463 552 EVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKD 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 654 LKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEM 733
Cdd:pfam02463 632 TELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 734 SDRIQQLEREMARYKD---------ESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKE 804
Cdd:pfam02463 712 LKKLKLEAEELLADRVqeaqdkineELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEE 791
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 805 QVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLma 884
Cdd:pfam02463 792 KEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELL-- 869
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 885 MEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAA 964
Cdd:pfam02463 870 QELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKE 949
|
730 740
....*....|....*....|....
gi 2035341231 965 LKREKDRLVQQLKQQTQNRMKLMA 988
Cdd:pfam02463 950 KEENNKEEEEERNKRLLLAKEELG 973
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
197-942 |
1.28e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 59.21 E-value: 1.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 197 ERALRKDEASKITIWKEQYRVVQ----EENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGEPCVAElTEENFQRLHA 272
Cdd:TIGR00618 185 EFAKKKSLHGKAELLTLRSQLLTlctpCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQE-EQLKKQQLLK 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 273 EHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQ 352
Cdd:TIGR00618 264 QLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQ 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 353 KEKENNMLREEMHRRFENApdsaKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSH 432
Cdd:TIGR00618 344 RRLLQTLHSQEIHIRDAHE----VATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAF 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 433 SkfmknkveQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTA 512
Cdd:TIGR00618 420 R--------DLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 513 KEQRAailqtevdalrLRLEEKETMLNKKTKQIqdmaEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEK 592
Cdd:TIGR00618 492 VLARL-----------LELQEEPCPLCGSCIHP----NPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 593 QMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKqeeidtykkDLKDLKEKVSLLQGdlsEKE 672
Cdd:TIGR00618 557 QRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAE---------DMLACEQHALLRKL---QPE 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 673 ASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDESS 752
Cdd:TIGR00618 625 QDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQT 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 753 KAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKkvanLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQL 832
Cdd:TIGR00618 705 LLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKE----LMHQARTVLKARTEAHFNNNEEVTAALQTGAEL 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 833 QDSLRKKDDRIEELEEALRESVQITAEremvlaqeesARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETH 912
Cdd:TIGR00618 781 SHLAAEIQFFNRLREEDTHLLKTLEAE----------IGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQ 850
|
730 740 750
....*....|....*....|....*....|
gi 2035341231 913 LTNLrAERRKHLEEVleMKQEALLAAISEK 942
Cdd:TIGR00618 851 LLKY-EECSKQLAQL--TQEQAKIIQLSDK 877
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
388-976 |
2.41e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 2.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 388 DSKIssmERGLRDLEEEIQMLKSNGALSTEER------EEEMKQMEVYRS-HSKFMKNKVEQLKEELSSKDAQGEELKKR 460
Cdd:TIGR02169 169 DRKK---EKALEELEEVEENIERLDLIIDEKRqqlerlRREREKAERYQAlLKEKREYEGYELLKEKEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 461 AAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDskqhievlkesLTAKEQRAaiLQTEVDALRLRLEEKETMLNK 540
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD-----------LGEEEQLR--VKEKIGELEAEIASLERSIAE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 541 KTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEE 620
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 621 ALADKERTIERLKEQRDRDEREKQE----------EIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGL 690
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQRlseeladlnaAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 691 KKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEM-SDRIQ---QLEREMARYKDESSKAqTEV---DRLLE 763
Cdd:TIGR02169 473 DLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVlKASIQgvhGTVAQLGSVGERYATA-IEVaagNRLNN 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 764 ILKEVENEKND-----KDKKIAELESLTSRQVKDQNKKVANLKHKEQV----------EKKKSA-----------QMLEE 817
Cdd:TIGR02169 552 VVVEDDAVAKEaiellKRRKAGRATFLPLNKMRDERRDLSILSEDGVIgfavdlvefdPKYEPAfkyvfgdtlvvEDIEA 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 818 ARR--------------------------REDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESAR 871
Cdd:TIGR02169 632 ARRlmgkyrmvtlegelfeksgamtggsrAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQEL 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 872 TNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAErRKHLEEVLEMKQEAlLAAISEKDANIALLEL 951
Cdd:TIGR02169 712 SDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE-LKELEARIEELEED-LHKLEEALNDLEARLS 789
|
650 660
....*....|....*....|....*
gi 2035341231 952 SSSKKKTQEEVAALKREKDRLVQQL 976
Cdd:TIGR02169 790 HSRIPEIQAELSKLEEEVSRIEARL 814
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
435-989 |
4.78e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.44 E-value: 4.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 435 FMKNKVEQLKEELSSKDAQGEelKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESltAKE 514
Cdd:pfam15921 235 YLKGRIFPVEDQLEALKSESQ--NKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQ--ARN 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 515 QRA------AILQTEVDALRLRLEEKETMLNKKtkqIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLR 588
Cdd:pfam15921 311 QNSmymrqlSDLESTVSQLRSELREAKRMYEDK---IEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLH 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 589 DKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDtykkdlkdlkEKVSLLQGdl 668
Cdd:pfam15921 388 KREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQME----------RQMAAIQG-- 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 669 seKEASLldlkEHASSLASSglkkdsrlktleiaLEQKKEECLKMESQLKkAHEATLEA--RASPEMSDRIQQLEREMAR 746
Cdd:pfam15921 456 --KNESL----EKVSSLTAQ--------------LESTKEMLRKVVEELT-AKKMTLESseRTVSDLTASLQEKERAIEA 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 747 YKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLtSRQVKDQNKKVANLKhkEQVEK---------KKSAQMLEE 817
Cdd:pfam15921 515 TNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEAL-KLQMAEKDKVIEILR--QQIENmtqlvgqhgRTAGAMQVE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 818 ARRREDSLSDSSQQLQDSL---RKKDDRIEELE------------------EALRESVQITAEREMVLAQEESART---- 872
Cdd:pfam15921 592 KAQLEKEINDRRLELQEFKilkDKKDAKIRELEarvsdlelekvklvnagsERLRAVKDIKQERDQLLNEVKTSRNelns 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 873 ----------NAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKEThltnlraeRRKHLEEVLEMKQEALLAAISEK 942
Cdd:pfam15921 672 lsedyevlkrNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEG--------SDGHAMKVAMGMQKQITAKRGQI 743
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 2035341231 943 DANIALLE-LSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMAD 989
Cdd:pfam15921 744 DALQSKIQfLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGE 791
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
619-978 |
4.82e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 4.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 619 EEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLqgdLSEKEASLLDLKEHASSLASsglkKDSRLKT 698
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYEL---LKEKEALERQKEAIERQLAS----LEEELEK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 699 LEIALEQKKEECLKMESQLKkaheaTLEARASPEMSDRIQQLEREMArykdessKAQTEVDRLLEILKEVENEKNDKDKK 778
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLE-----ELNKKIKDLGEEEQLRVKEKIG-------ELEAEIASLERSIAEKERELEDAEER 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 779 IAELESLTSRQvkdqnkkvanlkhkeQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITA 858
Cdd:TIGR02169 324 LAKLEAEIDKL---------------LAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 859 EREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEalLAA 938
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD--LSK 466
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 2035341231 939 ISEKdaniaLLELSSSKKKTQEEVAALKREKDRLVQQLKQ 978
Cdd:TIGR02169 467 YEQE-----LYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
736-964 |
1.44e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.16 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 736 RIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELEsltsRQVKDQNKKVANLKHKEQVEKKKSAQML 815
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE----QELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 816 EEARRREDSLSDSSQQlqdslrkkdDRIEELEEAlrESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESM 895
Cdd:COG4942 104 EELAELLRALYRLGRQ---------PPLALLLSP--EDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2035341231 896 KAKLSSTQQSLAEKETHLTNLRAERRKHLEEvLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAA 964
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLAR-LEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| RBD-FIP |
pfam09457 |
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of ... |
1072-1112 |
5.30e-07 |
|
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of Rab11-interacting proteins (FIPs). The Rab proteins constitute the largest family of small GTPases (>60 members in mammals). Among them Rab11 is a well characterized regulator of endocytic and recycling pathways. Rab11 associates with a broad range of post-Golgi organelles, including recycling endosomes.
Pssm-ID: 462805 [Multi-domain] Cd Length: 41 Bit Score: 46.95 E-value: 5.30e-07
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2035341231 1072 TQEQLQNELEKVEGDNAELQEFANTILQQIADHCPDILEQV 1112
Cdd:pfam09457 1 SRDELQDALQKQEEENRRLEDYIDNILLRIMEHNPSILEVP 41
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
389-602 |
5.49e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 5.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 389 SKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEI 468
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 469 GQVKQELSR--KDTELLALQTKLETLTNQ--FSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 544
Cdd:COG4942 100 EAQKEELAEllRALYRLGRQPPLALLLSPedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2035341231 545 IQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVK 602
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
438-919 |
5.52e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 5.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 438 NKVEQLKEELSSKDAQ--GEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDS--------KQHIEVLK 507
Cdd:COG4913 272 AELEYLRAALRLWFAQrrLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIERLE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 508 ESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKvnvlqkkienLQEQL 587
Cdd:COG4913 352 RELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRD----------LRREL 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 588 RDKEKQMSSLKERVKS----LQADTTNTDTALTTLEEAL---------ADKERT----IERL-----------KEQRDR- 638
Cdd:COG4913 422 RELEAEIASLERRKSNiparLLALRDALAEALGLDEAELpfvgelievRPEEERwrgaIERVlggfaltllvpPEHYAAa 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 639 ----DEREKQEEIDTYK-KDLKDLKEKVSLLQGDLSEK------------EASLL------------DLKEHASSLASSG 689
Cdd:COG4913 502 lrwvNRLHLRGRLVYERvRTGLPDPERPRLDPDSLAGKldfkphpfrawlEAELGrrfdyvcvdspeELRRHPRAITRAG 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 690 LKKDSRlktleIALEQKKEECLKMESQLKKAHEATLEARAspemsDRIQQLEREMARYKDESSKAQTEVDRL------LE 763
Cdd:COG4913 582 QVKGNG-----TRHEKDDRRRIRSRYVLGFDNRAKLAALE-----AELAELEEELAEAEERLEALEAELDALqerreaLQ 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 764 ILKEVENEKNDKDKKIAELESLTS--RQVKDQNKKVANLKhkeqvekkksaQMLEEARRREDSLSDSSQQLQDSLRKKDD 841
Cdd:COG4913 652 RLAEYSWDEIDVASAEREIAELEAelERLDASSDDLAALE-----------EQLEELEAELEELEEELDELKGEIGRLEK 720
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2035341231 842 RIEELEEALRESVQITAEREMVLAQEEsaRTNAEKQVEELLMAmEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAE 919
Cdd:COG4913 721 ELEQAEEELDELQDRLEAAEDLARLEL--RALLEERFAAALGD-AVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
532-975 |
8.68e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.19 E-value: 8.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 532 EEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNT 611
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 612 DTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLK 691
Cdd:pfam05483 309 MSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 692 KDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREM-----ARYKD----------ESSKAQT 756
Cdd:pfam05483 389 KSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELifllqAREKEihdleiqltaIKTSEEH 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 757 EVDRLLEILKEVENEKND-------------KDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRRED 823
Cdd:pfam05483 469 YLKEVEDLKTELEKEKLKnieltahcdklllENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRD 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 824 SLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQ 903
Cdd:pfam05483 549 ELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAEN 628
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2035341231 904 QSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQ 975
Cdd:pfam05483 629 KQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQH 700
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
564-780 |
1.25e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 564 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREK 643
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 644 QEEIDTYKK-------DLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLAS--SGLKKD-SRLKTLEIALEQKKEECLKM 713
Cdd:COG4942 100 EAQKEELAEllralyrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREqaEELRADlAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2035341231 714 ESQLKKAHEATLEARAspEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIA 780
Cdd:COG4942 180 LAELEEERAALEALKA--ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
414-949 |
1.28e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 52.80 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 414 LSTEEREEEMKQMEVYRSHSKfmkNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLT 493
Cdd:pfam05483 247 IQITEKENKMKDLTFLLEESR---DKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIAT 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 494 NQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEK------------------ETMLNKKTKQIQDMAEEKGTQ 555
Cdd:pfam05483 324 KTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELlrteqqrleknedqlkiiTMELQKKSSELEEMTKFKNNK 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 556 AGEIHDLKDMLDVKERKVNVlQKKIENLQEQLRDKEKQMSSLkervksLQADTTNTDTALTTLEEALADKERTIERLKEQ 635
Cdd:pfam05483 404 EVELEELKKILAEDEKLLDE-KKQFEKIAEELKGKEQELIFL------LQAREKEIHDLEIQLTAIKTSEEHYLKEVEDL 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 636 RDRDEREKQEEIDTYKKDLKDLKEKVSLLQgdlsEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKkeecLKMES 715
Cdd:pfam05483 477 KTELEKEKLKNIELTAHCDKLLLENKELTQ----EASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKE----MNLRD 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 716 QLKKAHEATLEARasPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNK 795
Cdd:pfam05483 549 ELESVREEFIQKG--DEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSA 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 796 KVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEAlresvQITAEREMVLAQEESARtnAE 875
Cdd:pfam05483 627 ENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKA-----KAIADEAVKLQKEIDKR--CQ 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 876 KQVEELLMAMEKVKQ-----------ELESMKAKLSSTQQSLAEKETHLTNLRAERRKhLEEVLEMKQEALLAAISEKDA 944
Cdd:pfam05483 700 HKIAEMVALMEKHKHqydkiieerdsELGLYKNKEQEQSSAKAALEIELSNIKAELLS-LKKQLEIEKEEKEKLKMEAKE 778
|
....*
gi 2035341231 945 NIALL 949
Cdd:pfam05483 779 NTAIL 783
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
445-986 |
1.34e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.87 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 445 EELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDS----------KQHIEVLKESLTAK- 513
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAeemrarlaarKQELEEILHELESRl 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 514 ---EQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDK 590
Cdd:pfam01576 85 eeeEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 591 EKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERT---IERLKEQRDRDEREKQEEIdtykkdlKDLKEKVSLLQGD 667
Cdd:pfam01576 165 TSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGrqeLEKAKRKLEGESTDLQEQI-------AELQAQIAELRAQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 668 LSEKEASLLDLKehaSSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARaspEMSDRIQQLEREMARY 747
Cdd:pfam01576 238 LAKKEEELQAAL---ARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRR---DLGEELEALKTELEDT 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 748 KDeSSKAQTEV-----DRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKH-KEQVEKKKSAQMLEEARRR 821
Cdd:pfam01576 312 LD-TTAAQQELrskreQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRnKANLEKAKQALESENAELQ 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 822 ED--SLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKL 899
Cdd:pfam01576 391 AElrTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQL 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 900 SSTQQSLAEKETHLTNLRA------ERRKHLEEVLEMKQEALLAAisEKDANIALLELSSSKKKTQEEVAA--------- 964
Cdd:pfam01576 471 QDTQELLQEETRQKLNLSTrlrqleDERNSLQEQLEEEEEAKRNV--ERQLSTLQAQLSDMKKKLEEDAGTlealeegkk 548
|
570 580
....*....|....*....|...
gi 2035341231 965 -LKREKDRLVQQLKQQTQNRMKL 986
Cdd:pfam01576 549 rLQRELEALTQQLEEKAAAYDKL 571
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
464-645 |
3.75e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.60 E-value: 3.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 464 LQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEeketmlnkktK 543
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG----------E 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 544 QIQDMAEEKGT--------QAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTAL 615
Cdd:COG3883 91 RARALYRSGGSvsyldvllGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190
....*....|....*....|....*....|
gi 2035341231 616 TTLEEALADKERTIERLKEQRDRDEREKQE 645
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAE 200
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
508-760 |
4.84e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 4.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 508 ESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQL 587
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 588 RDKEKQmssLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDerekQEEIDTYKKDLKDLKEKVSLLQGD 667
Cdd:COG4942 100 EAQKEE---LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR----REQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 668 LSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKkaheatlearaspEMSDRIQQLEREMARY 747
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE-------------ELEALIARLEAEAAAA 239
|
250
....*....|...
gi 2035341231 748 KDESSKAQTEVDR 760
Cdd:COG4942 240 AERTPAAGFAALK 252
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
390-1003 |
5.35e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.82 E-value: 5.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 390 KISSMERGLRDLEEEIQMLKSngalSTEEREEEMKQMEVYRShsKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIG 469
Cdd:TIGR00606 256 EIEHNLSKIMKLDNEIKALKS----RKKQMEKDNSELELKME--KVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 470 ---QVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKE-----QRAAILQTEVD-ALRLRLEEKETMLNK 540
Cdd:TIGR00606 330 klnKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLeldgfERGPFSERQIKnFHTLVIERQEDEAKT 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 541 KTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSL--------QADTTNTD 612
Cdd:TIGR00606 410 AAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRIleldqelrKAERELSK 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 613 TALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQgDLSEKEASLLDLKEHASSLASSGLKK 692
Cdd:TIGR00606 490 AEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTK-DKMDKDEQIRKIKSRHSDELTSLLGY 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 693 DSRLKTLEIALEQKKEECLKMESQLKKaheatlearaspeMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEV---E 769
Cdd:TIGR00606 569 FPNKKQLEDWLHSKSKEINQTRDRLAK-------------LNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVcgsQ 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 770 NEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSA--QMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELE 847
Cdd:TIGR00606 636 DEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSccPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTE 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 848 EALResvQITAEREMVLAQEESARTNAEKQVEELlmamEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKH---L 924
Cdd:TIGR00606 716 SELK---KKEKRRDEMLGLAPGRQSIIDLKEKEI----PELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAkvcL 788
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 925 EEVLEMKQ-EALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDDHFRSSRSNQ 1003
Cdd:TIGR00606 789 TDVTIMERfQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE 868
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
285-788 |
5.45e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 5.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 285 RKTLEEMELRIETQKQTLNARDEsIKKLLEMLQskglsakATEEDHERTRrlAEAEMHVHHLESLLEQKEKENNMLREEM 364
Cdd:PRK02224 233 RETRDEADEVLEEHEERREELET-LEAEIEDLR-------ETIAETERER--EELAEEVRDLRERLEELEEERDDLLAEA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 365 HRrfenapDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLK 444
Cdd:PRK02224 303 GL------DDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAR 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 445 EELSSKDAQGEELKKRAAglqseigqvkqelsrkdtellALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEV 524
Cdd:PRK02224 377 EAVEDRREEIEELEEEIE---------------------ELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 525 DALRLRLEEKETMLNK----------KTKQIQDMAEEKgtqAGEIHDLKDMLDVKERKVNVLQKKIENLqEQLRDKEKQM 594
Cdd:PRK02224 436 RTARERVEEAEALLEAgkcpecgqpvEGSPHVETIEED---RERVEELEAELEDLEEEVEEVEERLERA-EDLVEAEDRI 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 595 SSLKERVKSLQadttntdTALTTLEEALADKERTIERLKEQRDRDE---REKQEEIDTYKKDLKDLKEKVSLLQGDLSEK 671
Cdd:PRK02224 512 ERLEERREDLE-------ELIAERRETIEEKRERAEELRERAAELEaeaEEKREAAAEAEEEAEEAREEVAELNSKLAEL 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 672 EASLLDLKEHASSLASSGlKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEmSDRIQQLEREMARYKDES 751
Cdd:PRK02224 585 KERIESLERIRTLLAAIA-DAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFD-EARIEEAREDKERAEEYL 662
|
490 500 510
....*....|....*....|....*....|....*..
gi 2035341231 752 SKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSR 788
Cdd:PRK02224 663 EQVEEKLDELREERDDLQAEIGAVENELEELEELRER 699
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
344-906 |
5.59e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.82 E-value: 5.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 344 HHLESLLEQKEKENNMLREEMHR--RFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREE 421
Cdd:TIGR01612 1129 HHIKALEEIKKKSENYIDEIKAQinDLEDVADKAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTS 1208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 422 EMKQMEVYRSHSKFM-KNKVEQLKEELSSKDAQGEELKKRAAGLqSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSK 500
Cdd:TIGR01612 1209 LEEVKGINLSYGKNLgKLFLEKIDEEKKKSEHMIKAMEAYIEDL-DEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDK 1287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 501 QHievlkeSLTAKEQRAAILQTEVDALRLRLE-EKETMLNKKTKQIQDMAEEKGTQAGEIH----------------DLK 563
Cdd:TIGR01612 1288 DH------HIISKKHDENISDIREKSLKIIEDfSEESDINDIKKELQKNLLDAQKHNSDINlylneianiynilklnKIK 1361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 564 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKslqadttnTDTALTTLEEALADKE--RTIERLKEQRDRDER 641
Cdd:TIGR01612 1362 KIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDIN--------LEECKSKIESTLDDKDidECIKKIKELKNHILS 1433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 642 EkQEEIDTYKKDLKDLKEKVSLLQGDL-------------------SEKEASLLDLKEHASSLASSGLKKDSRLKTLE-- 700
Cdd:TIGR01612 1434 E-ESNIDTYFKNADENNENVLLLFKNIemadnksqhilkikkdnatNDHDFNINELKEHIDKSKGCKDEADKNAKAIEkn 1512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 701 -IALEQKKEECLKMesqLKKAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKE---VENE--KND 774
Cdd:TIGR01612 1513 kELFEQYKKDVTEL---LNKYSALAIKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEkfrIEDDaaKND 1589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 775 KDKKIA-----ELESLTSRQVKDQN-KKVAN--LKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEEL 846
Cdd:TIGR01612 1590 KSNKAAidiqlSLENFENKFLKISDiKKKINdcLKETESIEKKISSFSIDSQDTELKENGDNLNSLQEFLESLKDQKKNI 1669
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2035341231 847 EEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKV-KQELESMKAKLSSTQQSL 906
Cdd:TIGR01612 1670 EDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIAnKEEIESIKELIEPTIENL 1730
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
398-820 |
6.76e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 6.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 398 LRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSR 477
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 478 KDT--ELLALQTKLETLTNQFSDSKQHIEVLKEsltaKEQRAAILQTEVDALRLRLEEKETMLNKKT-KQIQDMAEEKGT 554
Cdd:COG4717 128 LPLyqELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATeEELQDLAEELEE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 555 QAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQ-----------------------------MSSLKERVKSLQ 605
Cdd:COG4717 204 LQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEerlkearlllliaaallallglggsllslILTIAGVLFLVL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 606 ADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSL 685
Cdd:COG4717 284 GLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 686 ASSGLKKDSR----------LKTLEIALEQK------KEECLKMESQL---KKAHEATLEARASPEMSDRIQQLEREMAR 746
Cdd:COG4717 364 QLEELEQEIAallaeagvedEEELRAALEQAeeyqelKEELEELEEQLeelLGELEELLEALDEEELEEELEELEEELEE 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 747 YKDESSKAQTEVDRLLEILKEVENEkNDKDKKIAELESLTSRqVKDQNKKVANLK--------HKEQVEKKKSAQMLEEA 818
Cdd:COG4717 444 LEEELEELREELAELEAELEQLEED-GELAELLQELEELKAE-LRELAEEWAALKlalelleeAREEYREERLPPVLERA 521
|
..
gi 2035341231 819 RR 820
Cdd:COG4717 522 SE 523
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
602-977 |
7.93e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 7.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 602 KSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDErEKQEEIDTYKKDLKDlkekvslLQGDLSEKEASLLDLKEH 681
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELE-EVLREINEISSELPE-------LREELEKLEKEVKELEEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 682 ASSLASSGLKKDSR---LKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTEV 758
Cdd:PRK03918 237 KEEIEELEKELESLegsKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 759 DRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKK-------------VANLKHKEQVEKKKSAQMLEEARRREDSL 825
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLeeleerhelyeeaKAKKEELERLKKRLTGLTPEKLEKELEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 826 SDSSQQLQDSLRKKDDRIEELEealresvQITAEREMVLAQEESART-----NAEKQVEELLMAMEKVKQELESMKAKLS 900
Cdd:PRK03918 397 EKAKEEIEEEISKITARIGELK-------KEIKELKKAIEELKKAKGkcpvcGRELTEEHRKELLEEYTAELKRIEKELK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 901 STQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKK---KTQEEVAALKREKDRLVQQLK 977
Cdd:PRK03918 470 EIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEeyeKLKEKLIKLKGEIKSLKKELE 549
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
425-606 |
8.45e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.02 E-value: 8.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 425 QMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKR---------AAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQ 495
Cdd:COG3206 169 RREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvdlseeAKLLLQQLSELESQLAEARAELAEAEARLAALRAQ 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 496 FSDSKQHIEVLKES--LTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEI-HDLKDMLDVKERK 572
Cdd:COG3206 249 LGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIlASLEAELEALQAR 328
|
170 180 190
....*....|....*....|....*....|....*..
gi 2035341231 573 VNVLQKKIENLQEQLR---DKEKQMSSLKERVKSLQA 606
Cdd:COG3206 329 EASLQAQLAQLEARLAelpELEAELRRLEREVEVARE 365
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
335-970 |
9.48e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.17 E-value: 9.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 335 RLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFE--------NAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQ 406
Cdd:pfam01576 20 RQQKAESELKELEKKHQQLCEEKNALQEQLQAETElcaeaeemRARLAARKQELEEILHELESRLEEEEERSQQLQNEKK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 407 MLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELS---RKDTELL 483
Cdd:pfam01576 100 KMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAeeeEKAKSLS 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 484 ALQTKLETLTNQFSD-------SKQHIEVLKESLtakEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQA 556
Cdd:pfam01576 180 KLKNKHEAMISDLEErlkkeekGRQELEKAKRKL---EGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEET 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 557 GEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQR 636
Cdd:pfam01576 257 AQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKAL 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 637 DRDEREKQEEIdtyKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQ 716
Cdd:pfam01576 337 EEETRSHEAQL---QEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQ 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 717 LKkaheatlearaspEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESL---TSRQVKDQ 793
Cdd:pfam01576 414 LQ-------------ELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQlqdTQELLQEE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 794 NKKVANLKHK-EQVEKKKSAQM-----LEEARRR-EDSLSDSSQQLQDSLRKKDDR---IEELEEA-------LRESVQI 856
Cdd:pfam01576 481 TRQKLNLSTRlRQLEDERNSLQeqleeEEEAKRNvERQLSTLQAQLSDMKKKLEEDagtLEALEEGkkrlqreLEALTQQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 857 TAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALL 936
Cdd:pfam01576 561 LEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALS 640
|
650 660 670
....*....|....*....|....*....|....
gi 2035341231 937 AAISEKDANIALLELSSSKKKTQEEVAALKREKD 970
Cdd:pfam01576 641 LARALEEALEAKEELERTNKQLRAEMEDLVSSKD 674
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
474-648 |
1.14e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.00 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 474 ELSRKDTELLALQTKLETLtnqfsdsKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLnkktKQIQDMAEEKG 553
Cdd:COG1579 11 DLQELDSELDRLEHRLKEL-------PAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEI----EEVEARIKKYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 554 TQAGEIHDLKDMldvkerkvNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLK 633
Cdd:COG1579 80 EQLGNVRNNKEY--------EALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEEL 151
|
170
....*....|....*
gi 2035341231 634 EQRDRDEREKQEEID 648
Cdd:COG1579 152 AELEAELEELEAERE 166
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
288-896 |
1.69e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.13 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 288 LEEMELRIETQKQTLNARDESIKKLLEMLQSKGL---SAKATEEDHERTRRLAEAEmhVHHLESLLEQKEKENNMLREEM 364
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLeleNIKKQIADDEKSHSITLKE--IERLSIEYNNAMDDYNNLKSAL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 365 HRrfenapdsakTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSngalsTEEREEEMKQMEVYRSHSKF-----MKNK 439
Cdd:PRK01156 242 NE----------LSSLEDMKNRYESEIKTAESDLSMELEKNNYYKE-----LEERHMKIINDPVYKNRNYIndyfkYKND 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 440 VEQLKEELSSKDAQ---GEELKKRAAGLQSEIGQVKQELSRKDtELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQR 516
Cdd:PRK01156 307 IENKKQILSNIDAEinkYHAIIKKLSVLQKDYNDYIKKKSRYD-DLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKN 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 517 AAILQTEVDALRLRLEEKETMLNKKTKQIqdmaeekgtqageihdlKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSS 596
Cdd:PRK01156 386 IERMSAFISEILKIQEIDPDAIKKELNEI-----------------NVKLQDISSKVSSLNQRIRALRENLDELSRNMEM 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 597 LKERVK-----------SLQADTTNTDTALTTLEEALADKERTI----ERLKEQRDRDEREKQEEIDTYKKDLKDlkekv 661
Cdd:PRK01156 449 LNGQSVcpvcgttlgeeKSNHIINHYNEKKSRLEEKIREIEIEVkdidEKIVDLKKRKEYLESEEINKSINEYNK----- 523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 662 sllqgdLSEKEASLLDLKEHASSLASSGLKK---DSRLKTLEIA-LEQKKEECLKMESQLKKAHEATLEARaSPEMSDRI 737
Cdd:PRK01156 524 ------IESARADLEDIKIKINELKDKHDKYeeiKNRYKSLKLEdLDSKRTSWLNALAVISLIDIETNRSR-SNEIKKQL 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 738 QQLEremarykdesskaqtevDRLLEILKEVENEKNDKDKKIAELE----SLTSRQVKDQNKKVANLKHKEQVE--KKKS 811
Cdd:PRK01156 597 NDLE-----------------SRLQEIEIGFPDDKSYIDKSIREIEneanNLNNKYNEIQENKILIEKLRGKIDnyKKQI 659
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 812 AQMLEearrREDSLSDSSQQLQDSlrkkDDRIEELEEALRESVQITAEREmvlAQEESARTNaekqVEELLMAMEKVKQE 891
Cdd:PRK01156 660 AEIDS----IIPDLKEITSRINDI----EDNLKKSRKALDDAKANRARLE---STIEILRTR----INELSDRINDINET 724
|
....*
gi 2035341231 892 LESMK 896
Cdd:PRK01156 725 LESMK 729
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
757-989 |
1.96e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 1.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 757 EVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKV---ANLKHKEQVE-------KKKSAQMLEEARRREDSLS 826
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAEryqALLKEKREYEgyellkeKEALERQKEAIERQLASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 827 DSSQQLQDSLRKKDDRIEELEEALRE---SVQITAEREMVLAQE-----ESARTNAEKQVEELLMAMEKVKQELESMKAK 898
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEElnkKIKDLGEEEQLRVKEkigelEAEIASLERSIAEKERELEDAEERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 899 LSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQE--ALLAAISEKDANIALL--ELSSSKKK---TQEEVAALKREKDR 971
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEleDLRAELEEVDKEFAETrdELKDYREKlekLKREINELKRELDR 410
|
250
....*....|....*...
gi 2035341231 972 LVQQLKQQTQNRMKLMAD 989
Cdd:TIGR02169 411 LQEELQRLSEELADLNAA 428
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
735-964 |
2.02e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.29 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 735 DRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELEsltsRQVKDQNKKVANLKHKEQVEKKKSAQM 814
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQ----AEIDKLQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 815 LEEARRREDSLSD-----SSQQLQDSLrkkdDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELlmamEKVK 889
Cdd:COG3883 92 ARALYRSGGSVSYldvllGSESFSDFL----DRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAEL----EALK 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2035341231 890 QELESMKAKLsstQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAA 964
Cdd:COG3883 164 AELEAAKAEL---EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
619-1034 |
2.03e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.81 E-value: 2.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 619 EEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKT 698
Cdd:pfam02463 182 TENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 699 LEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQL---------EREMARYKDESSKAQTEVDRLLEILKEVE 769
Cdd:pfam02463 262 KEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLklerrkvddEEKLKESEKEKKKAEKELKKEKEEIEELE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 770 NEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEA 849
Cdd:pfam02463 342 KELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLL 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 850 LRESVQITAEREMVLAQEESARTNAEKQVEELlmamekVKQELESMKAKLSSTQQSLAEKETHLTnlrAERRKHLEEVLE 929
Cdd:pfam02463 422 KEEKKEELEILEEEEESIELKQGKLTEEKEEL------EKQELKLLKDELELKKSEDLLKETQLV---KLQEQLELLLSR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 930 MKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDDHFRSSRSNQTNHKPS 1009
Cdd:pfam02463 493 QKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTE 572
|
410 420
....*....|....*....|....*
gi 2035341231 1010 PDQIIQPLLELDQNRSKLKLYIGHL 1034
Cdd:pfam02463 573 LPLGARKLRLLIPKLKLPLKSIAVL 597
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
772-968 |
2.22e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.24 E-value: 2.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 772 KNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKsaqmlEEARRRedslsdssQQLQDSLRKKDDRIEELEEALR 851
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKE-----EIHKLR--------NEFEKELRERRNELQKLEKRLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 852 EsvqitaeREMVLaqeesartnaEKQVEELlmamEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMK 931
Cdd:PRK12704 93 Q-------KEENL----------DRKLELL----EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLT 151
|
170 180 190
....*....|....*....|....*....|....*..
gi 2035341231 932 QEallaaisekDANIALLElsSSKKKTQEEVAALKRE 968
Cdd:PRK12704 152 AE---------EAKEILLE--KVEEEARHEAAVLIKE 177
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
731-932 |
2.84e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 2.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 731 PEMSDRIQQLEREMARYKD---ESSKAQTEVDRLLEIlKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKE--- 804
Cdd:COG4913 221 PDTFEAADALVEHFDDLERaheALEDAREQIELLEPI-RELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAElee 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 805 -QVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKD-DRIEELEEALRESVQITAEREMVLAQ-EESART---NAEKQV 878
Cdd:COG4913 300 lRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARlEALLAAlglPLPASA 379
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2035341231 879 EELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQ 932
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
741-990 |
3.07e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 3.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 741 EREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARR 820
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 821 REDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMV---LAQEESARTNAEKQVEELLMAMEKVKQELESMKA 897
Cdd:pfam02463 249 EQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLakeEEELKSELLKLERRKVDDEEKLKESEKEKKKAEK 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 898 KLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLK 977
Cdd:pfam02463 329 ELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQ 408
|
250
....*....|...
gi 2035341231 978 QQTQNRMKLMADN 990
Cdd:pfam02463 409 LLLELARQLEDLL 421
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
473-605 |
3.08e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 47.65 E-value: 3.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 473 QELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEK 552
Cdd:PRK09039 46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQEL 125
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2035341231 553 GTQAGEIHDlkdmldvKERKVNVLQKKIENLQEQL------------RDKEKQM----------SSLKERVKSLQ 605
Cdd:PRK09039 126 DSEKQVSAR-------ALAQVELLNQQIAALRRQLaaleaaldasekRDRESQAkiadlgrrlnVALAQRVQELN 193
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
729-986 |
3.33e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 729 ASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLtsrqvKDQNKKVANLKHKEQVEK 808
Cdd:PRK03918 187 RTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEEL-----EKELESLEGSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 809 KKSAQMLEEARRREDSLSDSSQQLQdSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELlmamEKV 888
Cdd:PRK03918 262 RELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL----EEK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 889 KQELESMKAKLSSTQQSLAEKETHLTNLraERRKHLEEVLEmKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKRE 968
Cdd:PRK03918 337 EERLEELKKKLKELEKRLEELEERHELY--EEAKAKKEELE-RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITAR 413
|
250
....*....|....*...
gi 2035341231 969 KDRLVQQLKQQTQNRMKL 986
Cdd:PRK03918 414 IGELKKEIKELKKAIEEL 431
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
464-792 |
4.32e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 47.20 E-value: 4.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 464 LQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTK 543
Cdd:COG4372 43 LQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQK 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 544 QIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERvkSLQADTTNTDTALTTLEEALA 623
Cdd:COG4372 123 ERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEA--EAEQALDELLKEANRNAEKEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 624 DKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIAL 703
Cdd:COG4372 201 ELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEI 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 704 EQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELE 783
Cdd:COG4372 281 AALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLS 360
|
....*....
gi 2035341231 784 SLTSRQVKD 792
Cdd:COG4372 361 KGAEAGVAD 369
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
436-626 |
5.78e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 5.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 436 MKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSD----------SKQHIEV 505
Cdd:COG3883 28 LQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraralyrsggSVSYLDV 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 506 LKESLTAKE--QRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENL 583
Cdd:COG3883 108 LLGSESFSDflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQL 187
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2035341231 584 QEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKE 626
Cdd:COG3883 188 SAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
593-835 |
7.11e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.93 E-value: 7.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 593 QMSSL-KERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEK 671
Cdd:PHA02562 167 EMDKLnKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 672 EASLLDLKEHASSLASSGLKKDSRLKTL--EIALEQKKEECL-----------KMESQLKKAHEATLEARaspEMSDRIQ 738
Cdd:PHA02562 247 VMDIEDPSAALNKLNTAAAKIKSKIEQFqkVIKMYEKGGVCPtctqqisegpdRITKIKDKLKELQHSLE---KLDTAID 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 739 QLEREMARYkDESSKAQTEVDRLLEILKEVENEKNDKDKKI-AELESLTSrQVKDQNKKVANLKHKEQVEKKKSAQMLEE 817
Cdd:PHA02562 324 ELEEIMDEF-NEQSKKLLELKNKISTNKQSLITLVDKAKKVkAAIEELQA-EFVDNAEELAKLQDELDKIVKTKSELVKE 401
|
250
....*....|....*...
gi 2035341231 818 arrrEDSLSDSSQQLQDS 835
Cdd:PHA02562 402 ----KYHRGIVTDLLKDS 415
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
577-894 |
7.20e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 7.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 577 QKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLK-EQRDRD-EREKQEEIdtykKDL 654
Cdd:pfam17380 298 QERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRqEERKRElERIRQEEI----AME 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 655 KDLKEKVSLLQGDLSEKEASLLDLKEHAsslassglkkdSRLKTLEIALEQKKEECLKMESQLKKAHEatlEARASpEMS 734
Cdd:pfam17380 374 ISRMRELERLQMERQQKNERVRQELEAA-----------RKVKILEEERQRKIQQQKVEMEQIRAEQE---EARQR-EVR 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 735 DRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKkiaelESLTSRQVKDQNKKVAnlkhkEQVEKKKSAQM 814
Cdd:pfam17380 439 RLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEK-----EKRDRKRAEEQRRKIL-----EKELEERKQAM 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 815 LEEARRREdSLSDSSQQLQDSLRKKDDRiEELEEALRESVQITAER----EMVLAQEESARTNAEKQVEELLMAM---EK 887
Cdd:pfam17380 509 IEEERKRK-LLEKEMEERQKAIYEEERR-REAEEERRKQQEMEERRriqeQMRKATEERSRLEAMEREREMMRQIvesEK 586
|
....*..
gi 2035341231 888 VKQELES 894
Cdd:pfam17380 587 ARAEYEA 593
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
473-685 |
8.18e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 8.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 473 QELSRKDTELLALQTKLETLtnqfsdskQHIEVLKESLTAKEQRAAILQTEVDALRLrlEEKETMLNKKTKQIQDMAEEK 552
Cdd:COG4913 235 DDLERAHEALEDAREQIELL--------EPIRELAERYAAARERLAELEYLRAALRL--WFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 553 GTQAGEIHDLKDMLDVKERKVNVLQ--------KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAD 624
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEaqirgnggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2035341231 625 KERTIERLKEQRDRDEREKQEEIDtykkdlkDLKEKVSLLQGDLSEKEASLLDLKEHASSL 685
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALA-------EAEAALRDLRRELRELEAEIASLERRKSNI 438
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
473-939 |
8.32e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 8.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 473 QELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKEtmLNKKTKQIQDMAEEK 552
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA--LEAELAELPERLEEL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 553 GTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLR-DKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIER 631
Cdd:COG4717 152 EERLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 632 LKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIAleqkkeecl 711
Cdd:COG4717 232 LENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK--------- 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 712 KMESQLKKAHEATLEAraspemsdriQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVK 791
Cdd:COG4717 303 EAEELQALPALEELEE----------EELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 792 DQNKKVANLKHKEQVEKKksaqmLEEARRRedslsdssQQLQDSLRKKDDRIEELEEALRESVQITAEREMvlaqeesar 871
Cdd:COG4717 373 AALLAEAGVEDEEELRAA-----LEQAEEY--------QELKEELEELEEQLEELLGELEELLEALDEEEL--------- 430
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 872 tnaEKQVEELLMAMEKVKQELESMKAKLSSTQQSL--AEKETHLTNLRAERRKHLEEVLEMKQEALLAAI 939
Cdd:COG4717 431 ---EEELEELEEELEELEEELEELREELAELEAELeqLEEDGELAELLQELEELKAELRELAEEWAALKL 497
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
621-858 |
1.42e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 621 ALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLE 700
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 701 IALEQKKEEclkMESQLKKAHEAtleARASPEM----SDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKD 776
Cdd:COG4942 97 AELEAQKEE---LAELLRALYRL---GRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 777 KKIAELESLTSRQVKDQNKKvanlkhkeQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQI 856
Cdd:COG4942 171 AERAELEALLAELEEERAAL--------EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
..
gi 2035341231 857 TA 858
Cdd:COG4942 243 TP 244
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
718-907 |
1.71e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.54 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 718 KKAHEATLEARaspemsDRIQQLEREMARYKDEsskAQTEV-DRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKK 796
Cdd:PRK12704 31 AKIKEAEEEAK------RILEEAKKEAEAIKKE---ALLEAkEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 797 VANLKHKEQ-VEKKKsaqmlEEARRREDSLSDSSQQLQdslRKKDDRIEELEEAlresVQITAE--REMVLAQ-EESART 872
Cdd:PRK12704 102 LELLEKREEeLEKKE-----KELEQKQQELEKKEEELE---ELIEEQLQELERI----SGLTAEeaKEILLEKvEEEARH 169
|
170 180 190
....*....|....*....|....*....|....*..
gi 2035341231 873 NAEKQVEEllmAMEKVKQELEsMKAK--LSSTQQSLA 907
Cdd:PRK12704 170 EAAVLIKE---IEEEAKEEAD-KKAKeiLAQAIQRCA 202
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
719-985 |
1.98e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 719 KAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLtsrqvkDQNKKVA 798
Cdd:PTZ00121 1088 RADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRV------EIARKAE 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 799 NLKHKEQVEKKKSAQMLEEARRREDSlsdssqQLQDSLRKKDDrIEELEEALREsvqitaerEMVLAQEESARTNAEKQV 878
Cdd:PTZ00121 1162 DARKAEEARKAEDAKKAEAARKAEEV------RKAEELRKAED-ARKAEAARKA--------EEERKAEEARKAEDAKKA 1226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 879 EELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANiallELSSSKKKT 958
Cdd:PTZ00121 1227 EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD----EAKKAEEKK 1302
|
250 260
....*....|....*....|....*..
gi 2035341231 959 QEEVAALKREKDRLVQQLKQQTQNRMK 985
Cdd:PTZ00121 1303 KADEAKKKAEEAKKADEAKKKAEEAKK 1329
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
436-596 |
2.01e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 2.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 436 MKNKVEQLkEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQ 515
Cdd:COG1579 2 MPEDLRAL-LDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 516 R---------AAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQ 586
Cdd:COG1579 81 QlgnvrnnkeYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEE 160
|
170
....*....|
gi 2035341231 587 LRDKEKQMSS 596
Cdd:COG1579 161 LEAEREELAA 170
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
334-567 |
2.08e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 334 RRLAEAEMHVHHLESLLEQKEKEnnmlREEMHRRFEnapdsaktkALQTVIEMKDSKI--SSMERGLRDLEEEIQMLKSN 411
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAE----LDALQERRE---------ALQRLAEYSWDEIdvASAEREIAELEAELERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 412 GAlsteereeemkqmevyrshskfmknKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLET 491
Cdd:COG4913 684 SD-------------------------DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA 738
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 492 LTNQFS-DSKQHIEVLKESLTAKEQRAAI---LQTEVDALRLRLEEKETMLNKKTKQIQ----DMAEEKGTQAGEIHDLK 563
Cdd:COG4913 739 AEDLARlELRALLEERFAAALGDAVERELrenLEERIDALRARLNRAEEELERAMRAFNrewpAETADLDADLESLPEYL 818
|
....
gi 2035341231 564 DMLD 567
Cdd:COG4913 819 ALLD 822
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
264-590 |
2.16e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.60 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 264 EENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSkgLSAKATEEdheRTRRLAEAEMHV 343
Cdd:pfam12128 610 EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQS--EKDKKNKA---LAERKDSANERL 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 344 HHLESLLEQKEKENNMLREEMHRRFENApDSAKTKALQTVIEMKDSKISSmerglrdLEEEIQMLKSNGALSTEEREEEM 423
Cdd:pfam12128 685 NSLEAQLKQLDKKHQAWLEEQKEQKREA-RTEKQAYWQVVEGALDAQLAL-------LKAAIAARRSGAKAELKALETWY 756
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 424 KQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEelKKRAAGLQSEIGQVKQELSRKD---TELLALQTKLE----TLTNQF 496
Cdd:pfam12128 757 KRDLASLGVDPDVIAKLKREIRTLERKIERIA--VRRQEVLRYFDWYQETWLQRRPrlaTQLSNIERAISelqqQLARLI 834
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 497 SDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMlnkktKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVL 576
Cdd:pfam12128 835 ADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATL-----KEDANSEQAQGSIGERLAQLEDLKLKRDYLSESV 909
|
330
....*....|....
gi 2035341231 577 QKKIENLQEQLRDK 590
Cdd:pfam12128 910 KKYVEHFKNVIADH 923
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
420-986 |
2.36e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 420 EEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDS 499
Cdd:pfam02463 152 PERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDY 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 500 KQHIEVLKESLT----AKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNV 575
Cdd:pfam02463 232 LKLNEERIDLLQellrDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 576 LQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDR---------DEREKQEE 646
Cdd:pfam02463 312 DEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEEllakkklesERLSSAAK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 647 IDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLE 726
Cdd:pfam02463 392 LKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 727 A-RASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANL----- 800
Cdd:pfam02463 472 DlLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIStaviv 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 801 ----KHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEK 876
Cdd:pfam02463 552 evsaTADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKD 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 877 QVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKK 956
Cdd:pfam02463 632 TELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711
|
570 580 590
....*....|....*....|....*....|
gi 2035341231 957 KTQEEVAALKREKDRLVQQLKQQTQNRMKL 986
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAQDKINEELKLL 741
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
682-900 |
2.61e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 682 ASSLASSGLKKDSRLKTLEiALEQKKEECLKMESQLKKAHEATLEARAspEMSDRIQQLEREMARYKDESSKAQTEVDRL 761
Cdd:COG4942 12 ALAAAAQADAAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLA--ALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 762 LEILKEVENEKNDKDKKIAELesLTSRQVKDQNKKVANLKHKEQVEK------------KKSAQMLEEARRREDSLSDSS 829
Cdd:COG4942 89 EKEIAELRAELEAQKEELAEL--LRALYRLGRQPPLALLLSPEDFLDavrrlqylkylaPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2035341231 830 QQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLS 900
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
737-942 |
2.68e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 737 IQQLEREMARYKDESSK----AQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSA 812
Cdd:COG4717 48 LERLEKEADELFKPQGRkpelNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 813 QMLEEARrredslsdssQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEkvkQEL 892
Cdd:COG4717 128 LPLYQEL----------EALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATE---EEL 194
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2035341231 893 ESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEK 942
Cdd:COG4717 195 QDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEER 244
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
713-950 |
2.78e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 713 MESQLKKAHEATLEARAS-----PEMSDRIQQLEREMARYKDESS--KAQTEVDRLLEILKEVENEKNDKDKKIAELESL 785
Cdd:COG3206 162 LEQNLELRREEARKALEFleeqlPELRKELEEAEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 786 ---TSRQVKDQNKKVANLKHKEQVEKKKSAqmLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEalresvQITAEREM 862
Cdd:COG3206 242 laaLRAQLGSGPDALPELLQSPVIQQLRAQ--LAELEAELAELSARYTPNHPDVIALRAQIAALRA------QLQQEAQR 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 863 VLAQEESARTNAEKQVEELlmamekvKQELESMKAKLsstqQSLAEKETHLTNLRAER---RKHLEEVLEMKQEALLAAi 939
Cdd:COG3206 314 ILASLEAELEALQAREASL-------QAQLAQLEARL----AELPELEAELRRLEREVevaRELYESLLQRLEEARLAE- 381
|
250
....*....|.
gi 2035341231 940 SEKDANIALLE 950
Cdd:COG3206 382 ALTVGNVRVID 392
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
570-852 |
3.42e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 570 ERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEAL--ADKERTIERLKEQRDRDEREKQEei 647
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLDASSDD-- 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 648 dtykkdlkdlkekVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEA 727
Cdd:COG4913 687 -------------LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 728 RASPEMSDRI-----QQLEREMARYKDESSKAQTEVDRLL-EILKEVENEKNDKDKKIAELESLtsRQVKDQNKKVANLK 801
Cdd:COG4913 754 RFAAALGDAVerelrENLEERIDALRARLNRAEEELERAMrAFNREWPAETADLDADLESLPEY--LALLDRLEEDGLPE 831
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2035341231 802 HKEQVEKKKSAQMleearrrEDSLSDSSQQLQDSLRKKDDRIEELEEALRE 852
Cdd:COG4913 832 YEERFKELLNENS-------IEFVADLLSKLRRAIREIKERIDPLNDSLKR 875
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
736-900 |
3.43e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 3.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 736 RIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESltsrQVKDQNKKVAnlKHKEQVEKKKSAQML 815
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLEL----EIEEVEARIK--KYEEQLGNVRNNKEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 816 EEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALREsvqITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESM 895
Cdd:COG1579 92 EALQKEIESLKRRISDLEDEILELMERIEELEEELAE---LEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
|
....*
gi 2035341231 896 KAKLS 900
Cdd:COG1579 169 AAKIP 173
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
209-421 |
5.63e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.85 E-value: 5.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 209 TIWKEQYRVVQEENQHMQMTIQALQDELRIQRDlnqlFQQDSSSRTGEPcVAELTE------ENFQRLHAEHERQAKELF 282
Cdd:PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNK----NIEEQRKKNGEN-IARKQNkydelvEEAKTIKAEIEELTDELL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 283 LLRKTLEEME---LRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNM 359
Cdd:PHA02562 245 NLVMDIEDPSaalNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDE 324
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2035341231 360 LREEMHRRFENapdSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREE 421
Cdd:PHA02562 325 LEEIMDEFNEQ---SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAK 383
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
759-985 |
6.84e-04 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 43.53 E-value: 6.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 759 DRLLEILKEVENEKNDKDKKIAELESLTSrQVKDQNKkvANLKHKEQVEkkksaqmLEEARRRedsLSdSSQQLQDSLRK 838
Cdd:COG0497 165 RAWRALKKELEELRADEAERARELDLLRF-QLEELEA--AALQPGEEEE-------LEEERRR---LS-NAEKLREALQE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 839 KDDRIEELEEALRESVQiTAEREMV-LAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLR 917
Cdd:COG0497 231 ALEALSGGEGGALDLLG-QALRALErLAEYDPSLAELAERLESALIELEEAASELRRYLDSLEFDPERLEEVEERLALLR 309
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2035341231 918 AERRKH---LEEVLEMKQEAL--LAAISEKDANIALLElssskkktqEEVAALKREKDRLVQQLkqqTQNRMK 985
Cdd:COG0497 310 RLARKYgvtVEELLAYAEELRaeLAELENSDERLEELE---------AELAEAEAELLEAAEKL---SAARKK 370
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
369-605 |
8.31e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.75 E-value: 8.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 369 ENAPDSAKTKALQTVIE-MKDSKISSMERGL--RDLEEEIQMLKSngalsTEEREEEMKQMEVYRSHS----KFMKNKVE 441
Cdd:PRK11281 30 ASNGDLPTEADVQAQLDaLNKQKLLEAEDKLvqQDLEQTLALLDK-----IDRQKEETEQLKQQLAQApaklRQAQAELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 442 QLKEELSSKDAQG------EELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIE----VLKESLT 511
Cdd:PRK11281 105 ALKDDNDEETRETlstlslRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQqirnLLKGGKV 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 512 AKEQ----RAAILQTEVDALRLRLEEKETMLNKKTkQIQDMAEEKgtqageihdlkdmLDVKERKVNVLQKKIENLQEQL 587
Cdd:PRK11281 185 GGKAlrpsQRVLLQAEQALLNAQNDLQRKSLEGNT-QLQDLLQKQ-------------RDYLTARIQRLEHQLQLLQEAI 250
|
250
....*....|....*...
gi 2035341231 588 RDKEKQMSslKERVKSLQ 605
Cdd:PRK11281 251 NSKRLTLS--EKTVQEAQ 266
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
421-854 |
1.07e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 421 EEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELsRKDTELLALQTKLETLTNQFSDSK 500
Cdd:TIGR00606 200 QKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRL-KEIEHNLSKIMKLDNEIKALKSRK 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 501 QHIEVLKESLtaKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKI 580
Cdd:TIGR00606 279 KQMEKDNSEL--ELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 581 ENLQEQL--RDKEKQMSSLKERVKSLQADTTNTDTALTTLE---EALADKERTIERLKEQRDRDEREKQEEIDTYKKDLK 655
Cdd:TIGR00606 357 DRHQEHIraRDSLIQSLATRLELDGFERGPFSERQIKNFHTlviERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKK 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 656 DLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKkdsrlktleiaLEQKKEECLKMESQLKKAHE-ATLEARASPEMS 734
Cdd:TIGR00606 437 GLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDR-----------ILELDQELRKAERELSKAEKnSLTETLKKEVKS 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 735 DRIQQLerEMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVE-----KK 809
Cdd:TIGR00606 506 LQNEKA--DLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEdwlhsKS 583
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 2035341231 810 KSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESV 854
Cdd:TIGR00606 584 KEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKL 628
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
703-1010 |
1.26e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.80 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 703 LEQKKEECLK-MESQLK-----KAHEATLEARAS--PEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVEneknd 774
Cdd:pfam17380 301 LRQEKEEKAReVERRRKleeaeKARQAEMDRQAAiyAEQERMAMERERELERIRQEERKRELERIRQEEIAMEIS----- 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 775 kdkKIAELESLtsrQVKDQNKkvaNLKHKEQVEKKKSAQMLEEARRR---------EDSLSDSSQQLQDSLRK-KDDRIE 844
Cdd:pfam17380 376 ---RMRELERL---QMERQQK---NERVRQELEAARKVKILEEERQRkiqqqkvemEQIRAEQEEARQREVRRlEEERAR 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 845 ELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKEthltnlraERRKHL 924
Cdd:pfam17380 447 EMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEE--------RKRKLL 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 925 EEVLEMKQEALLAAISEKDAniallelsSSKKKTQEEVaalkREKDRLVQQLKQQTQNRMKLMADNYEDDHFRSSRSNQT 1004
Cdd:pfam17380 519 EKEMEERQKAIYEEERRREA--------EEERRKQQEM----EERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEK 586
|
....*.
gi 2035341231 1005 NHKPSP 1010
Cdd:pfam17380 587 ARAEYE 592
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
260-860 |
1.42e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 42.82 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 260 AELTEENFQRLhaehERQAKELFLLRKTLEEMELRIETQKQTLNARdesikkllemlqskGLSAKATEEDHERTRR-LAE 338
Cdd:pfam07111 65 AELISRQLQEL----RRLEEEVRLLRETSLQQKMRLEAQAMELDAL--------------AVAEKAGQAEAEGLRAaLAG 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 339 AEMHVHHLESLLEQKEKENNMLREEMHrrfenapdSAKTKALQTVIEMKDSKISSMERGLRDLEEEiqmlksngalstee 418
Cdd:pfam07111 127 AEMVRKNLEEGSQRELEEIQRLHQEQL--------SSLTQAHEEALSSLTSKAEGLEKSLNSLETK-------------- 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 419 REEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAA-GLQSEIGQVKQELSRKD---------TELLALQTK 488
Cdd:pfam07111 185 RAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVGeQVPPEVHSQTWELERQElldtmqhlqEDRADLQAT 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 489 LETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTE---------------VDALRLRLEEKETMLNKKTKQIQD----MA 549
Cdd:pfam07111 265 VELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEfpkkcrsllnrwrekVFALMVQLKAQDLEHRDSVKQLRGqvaeLQ 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 550 EEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALadkERTI 629
Cdd:pfam07111 345 EQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWL---ETTM 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 630 ERLKEQRDRderekqeeIDTYKKDLKDLKEKVSLLQGdLSEKEASLLDLKEHASSLASSGLKKDSrlkTLEIALEQKKEE 709
Cdd:pfam07111 422 TRVEQAVAR--------IPSLSNRLSYAVRKVHTIKG-LMARKVALAQLRQESCPPPPPAPPVDA---DLSLELEQLREE 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 710 CLKMESQLK-KAHEATLEARASPE--------MSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIA 780
Cdd:pfam07111 490 RNRLDAELQlSAHLIQQEVGRAREqgeaerqqLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELT 569
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 781 ELESLTSRQVKDqnkKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEEL----EEALRESVQI 856
Cdd:pfam07111 570 QQQEIYGQALQE---KVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELrrlqDEARKEEGQR 646
|
....
gi 2035341231 857 TAER 860
Cdd:pfam07111 647 LARR 650
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
559-981 |
1.47e-03 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 42.69 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 559 IHDLKDMLDVKERKVNV-LQKKIENLQ-EQLRD----KEKQMSSLKERVKS-LQADTTNTDTALTTLEEALADKERTIEr 631
Cdd:NF033838 71 LSEIQKSLDKRKHTQNVaLNKKLSDIKtEYLYElnvlKEKSEAELTSKTKKeLDAAFEQFKKDTLEPGKKVAEATKKVE- 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 632 lkEQRDRDEREKQEEIDTYKKDLKDLKEkVSLLQGDLSEKEASLLDLKEHASslassGLKKDSRLKTLEIALEQKKEECL 711
Cdd:NF033838 150 --EAEKKAKDQKEEDRRNYPTNTYKTLE-LEIAESDVEVKKAELELVKEEAK-----EPRDEEKIKQAKAKVESKKAEAT 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 712 KMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDES-SKAQTEVDRLLEILKEVENEKNDKDKKIAElESLTSRQV 790
Cdd:NF033838 222 RLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPkRRAKRGVLGEPATPDKKENDAKSSDSSVGE-ETLPSPSL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 791 KDQnKKVANLKHKEQVEKKKSAQMLEEARRREDSLSdssqqlqdslrkkddrIEELEEALRESVQITAEREMVLAQEESA 870
Cdd:NF033838 301 KPE-KKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNT----------------YKTLELEIAESDVKVKEAELELVKEEAK 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 871 RTNAEKQVeellmamEKVKQELESMKA---KLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEA------LLAAISE 941
Cdd:NF033838 364 EPRNEEKI-------KQAKAKVESKKAeatRLEKIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPApapqpeKPAPKPE 436
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 2035341231 942 KDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQ 981
Cdd:NF033838 437 KPAEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTE 476
|
|
| Gp58 |
pfam07902 |
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage ... |
384-606 |
1.47e-03 |
|
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage and prophage proteins. They are similar to gp58, a minor structural protein of Lactococcus delbrueckii bacteriophage LL-H.
Pssm-ID: 369586 [Multi-domain] Cd Length: 594 Bit Score: 42.63 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 384 IEMKDSKIS-----------SMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDA 452
Cdd:pfam07902 92 LELTDTKNSnlwskiklnnnGMLREYHNDTIKTEIVESAEGIATRISEDTDKKLALINETISGIRREYQDADRQLSSSYQ 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 453 QGEE-----LKKRAAGLQSEIGQVKQELSRK-DTELLALQTKLETLTNQFSDS-KQHIEVLKESLTAKEQraailqtevd 525
Cdd:pfam07902 172 AGIEglkatMASDKIGLQAEIQASAQGLSQRyDNEIRKLSAKITTTSSGTTEAyESKLDDLRAEFTRSNQ---------- 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 526 ALRLRLEEKETMLnkktkqiqdmaeeKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQ 605
Cdd:pfam07902 242 GMRTELESKISGL-------------QSTQQSTAYQISQEISNREGAVSRVQQDLDSYQRRLQDAEKNYSSLTQTVKGLQ 308
|
.
gi 2035341231 606 A 606
Cdd:pfam07902 309 S 309
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
736-890 |
1.96e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 736 RIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESL-----TSRQVKDQNKKVANLKHKEQVEKKK 810
Cdd:COG1579 32 ELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgnvrNNKEYEALQKEIESLKRRISDLEDE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 811 SAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALREsvqITAEREMVLAQEESARTNAEkqvEELLMAMEKVKQ 890
Cdd:COG1579 112 ILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAE---LEAELEELEAEREELAAKIP---PELLALYERIRK 185
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
579-848 |
2.07e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 42.34 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 579 KIENLQEQLRDKEKQMSSLKER-VKSLQADTTNTDTALTTLEEALADKER-TIERLKEQRDRDEREKQEEIDTYKKDLKD 656
Cdd:PTZ00108 1103 KVEKLNAELEKKEKELEKLKNTtPKDMWLEDLDKFEEALEEQEEVEEKEIaKEQRLKSKTKGKASKLRKPKLKKKEKKKK 1182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 657 LKEKVSLlQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDR 736
Cdd:PTZ00108 1183 KSSADKS-KKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFS 1261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 737 IQQLEREMARyKDESSKAQTEVDRLLEILKEVENEKN----------DKDKKIAELESLTSRQVKDQNKKVA-NLKHKEQ 805
Cdd:PTZ00108 1262 SDDLSKEGKP-KNAPKRVSAVQYSPPPPSKRPDGESNggskpssptkKKVKKRLEGSLAALKKKKKSEKKTArKKKSKTR 1340
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 2035341231 806 VEKKKSAQMLEEARRREDSLSDSSqQLQDSLRKKDDRIEELEE 848
Cdd:PTZ00108 1341 VKQASASQSSRLLRRPRKKKSDSS-SEDDDDSEVDDSEDEDDE 1382
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
398-1003 |
2.27e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 398 LRDLEEEIQML--KSNGALSTEEREEEMKQMEVYR---SHSKFMKNKVEQLKEELSSKD---AQGEELKKRAAGLQSEIG 469
Cdd:pfam12128 292 LRTLDDQWKEKrdELNGELSAADAAVAKDRSELEAledQHGAFLDADIETAAADQEQLPswqSELENLEERLKALTGKHQ 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 470 QVKQELSRKDtellalQTKLETLTNQFSDSKQHIEVLKEslTAKEQRAAI---LQTEVDALRLRLEEKETMLNKKTKQIQ 546
Cdd:pfam12128 372 DVTAKYNRRR------SKIKEQNNRDIAGIKDKLAKIRE--ARDRQLAVAeddLQALESELREQLEAGKLEFNEEEYRLK 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 547 D-MAEEKGTQAGEIHDLKDMLDvkerkvnvlqkkIENLQEQL-RDKEKQMSSLKErVKSLQADTTNTDTALTTLEEALAD 624
Cdd:pfam12128 444 SrLGELKLRLNQATATPELLLQ------------LENFDERIeRAREEQEAANAE-VERLQSELRQARKRRDQASEALRQ 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 625 KERtieRLKEQRDRDERekqeeidtykkdlkdlkekvslLQGDLSEKEASLL--------DLKEHASSLASSGLKKDSRL 696
Cdd:pfam12128 511 ASR---RLEERQSALDE----------------------LELQLFPQAGTLLhflrkeapDWEQSIGKVISPELLHRTDL 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 697 KTLEIALEQKKEECL--------KMESQLKKAHEATLEARASP------EMSDRIQQLEREMARYKDESSKAQTEVDRLL 762
Cdd:pfam12128 566 DPEVWDGSVGGELNLygvkldlkRIDVPEWAASEEELRERLDKaeealqSAREKQAAAEEQLVQANGELEKASREETFAR 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 763 EILK-----------EVENEKNDKDKKIAElesltsrQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQ 831
Cdd:pfam12128 646 TALKnarldlrrlfdEKQSEKDKKNKALAE-------RKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQA 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 832 -LQDSLRKKDDRIEELEEALrESVQITAEREMVLAQEESARTNAEKQVEELLMAmeKVKQELESMKAKLSSTQQSLAE-- 908
Cdd:pfam12128 719 yWQVVEGALDAQLALLKAAI-AARRSGAKAELKALETWYKRDLASLGVDPDVIA--KLKREIRTLERKIERIAVRRQEvl 795
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 909 ------KET---HLTNLRAERRKHLEEVLEMKQEaLLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVqqlkQQ 979
Cdd:pfam12128 796 ryfdwyQETwlqRRPRLATQLSNIERAISELQQQ-LARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCE----MS 870
|
650 660
....*....|....*....|....
gi 2035341231 980 TQNRMKLMADNYEDDHFRSSRSNQ 1003
Cdd:pfam12128 871 KLATLKEDANSEQAQGSIGERLAQ 894
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
822-992 |
2.42e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 822 EDSLSDSSQQLQDSLRKKDDRIEELEEALREsvqitAEREMVLAQEESARTNAEKQVEELLmamekvkQELESMKAKLSS 901
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEE-----AEAALEEFRQKNGLVDLSEEAKLLL-------QQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 902 TQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEK--DANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQ 979
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQlaELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQE 310
|
170
....*....|...
gi 2035341231 980 TQNRMKLMADNYE 992
Cdd:COG3206 311 AQRILASLEAELE 323
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
375-606 |
2.66e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 375 AKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKS-NGALSTEEREE-EMKQMEVYRShskfmknKVEQLKEELSSKDA 452
Cdd:COG3206 168 LRREEARKALEFLEEQLPELRKELEEAEAALEEFRQkNGLVDLSEEAKlLLQQLSELES-------QLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 453 QGEELKKRAAGLQSEIGQVKQ--ELSRKDTELLALQTKLETLTNQFSDS-------KQHIEVLKESLTAKEQRAAI-LQT 522
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARYTPNhpdvialRAQIAALRAQLQQEAQRILAsLEA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 523 EVDALRLRLEEKETMLNKKTKQIQDMAEekgtqageihdlkdmldvkerkvnvLQKKIENLQEQLRDKEKQMSSLKERVK 602
Cdd:COG3206 321 ELEALQAREASLQAQLAQLEARLAELPE-------------------------LEAELRRLEREVEVARELYESLLQRLE 375
|
....
gi 2035341231 603 SLQA 606
Cdd:COG3206 376 EARL 379
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
671-942 |
2.67e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 671 KEASLLDLKEHASS----LASSGL-------KKDSRLKTLEiaLEQKKEECLKMESQLKKAHEAtLEARASPEMSDRIQQ 739
Cdd:PRK05771 7 KKVLIVTLKSYKDEvleaLHELGVvhiedlkEELSNERLRK--LRSLLTKLSEALDKLRSYLPK-LNPLREEKKKVSVKS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 740 LEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKK-------VANLKHKEQVEKKKsa 812
Cdd:PRK05771 84 LEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLgfkyvsvFVGTVPEDKLEELK-- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 813 qmLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALREsvqitaeremvlAQEESARTNAEKQVEELLmamEKVKQEL 892
Cdd:PRK05771 162 --LESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKK------------LGFERLELEEEGTPSELI---REIKEEL 224
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2035341231 893 ESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEmKQEALL-AAISEK 942
Cdd:PRK05771 225 EEIEKERESLLEELKELAKKYLEELLALYEYLEIELE-RAEALSkFLKTDK 274
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
578-978 |
3.96e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 3.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 578 KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTAlttlEEALADKERTIERLKEQRDRDEREKQeeidtykkdLKDL 657
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEEL----EEELEELEAELEELREELEKLEKLLQ---------LLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 658 KEKVSLLQGDLSEKEASLLDLKEHASSLASsglkKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEaraspEMSDRI 737
Cdd:COG4717 131 YQELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATEEELQ-----DLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 738 QQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKK---------------IAELESLTSRQ------------- 789
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEerlkearlllliaaaLLALLGLGGSLlsliltiagvlfl 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 790 ---------VKDQNKKVANLKHKEQVEKKKSAQMLEEARRRE--DSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITA 858
Cdd:COG4717 282 vlgllallfLLLAREKASLGKEAEELQALPALEELEEEELEEllAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 859 EREMVLAQEESARTNAEKQVEELLMAMEKVKQelesmkaklsstQQSLAEKETHLTNLRAERRKHLEEVlemkqEALLAA 938
Cdd:COG4717 362 ELQLEELEQEIAALLAEAGVEDEEELRAALEQ------------AEEYQELKEELEELEEQLEELLGEL-----EELLEA 424
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 2035341231 939 ISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQ 978
Cdd:COG4717 425 LDEEELEEELEELEEELEELEEELEELREELAELEAELEQ 464
|
|
| GAS |
pfam13851 |
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ... |
442-632 |
4.48e-03 |
|
Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.
Pssm-ID: 464001 [Multi-domain] Cd Length: 200 Bit Score: 39.50 E-value: 4.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 442 QLKEELsskdaqgEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHievlKESLTAKEQRAAILQ 521
Cdd:pfam13851 30 SLKEEI-------AELKKKEERNEKLMSEIQQENKRLTEPLQKAQEEVEELRKQLENYEKD----KQSLKNLKARLKVLE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 522 TEVDALRLRLEEKEtMLNKKTKQIQDMAEEKGTQAgeIHDLKDMLDVKErkvNVLQKKIENLQEQLRDKEKQMSSLKERV 601
Cdd:pfam13851 99 KELKDLKWEHEVLE-QRFEKVERERDELYDKFEAA--IQDVQQKTGLKN---LLLEKKLQALGETLEKKEAQLNEVLAAA 172
|
170 180 190
....*....|....*....|....*....|.
gi 2035341231 602 KslqADTTNTDTALTTLEEALADKERTIERL 632
Cdd:pfam13851 173 N---LDPDALQAVTEKLEDVLESKNQLIKDL 200
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
807-976 |
4.65e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 4.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 807 EKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQI-TAEREmvLAQEESARTNAEK---QVEELL 882
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVaSAERE--IAELEAELERLDAssdDLAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 883 MAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKH---LEEVLEMKQEALLAAISEKDANIALLELSSSKKKT- 958
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELqdrLEAAEDLARLELRALLEERFAAALGDAVERELRENl 771
|
170
....*....|....*...
gi 2035341231 959 QEEVAALKREKDRLVQQL 976
Cdd:COG4913 772 EERIDALRARLNRAEEEL 789
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
278-978 |
4.93e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 278 AKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKEN 357
Cdd:TIGR00606 418 QSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTE 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 358 NMLREEMHRRFENAPDSAKTKALQTVIEMKD------SKISSMERGLRDLEEEIQMLKSNGAlsteereEEMKQMEVYRS 431
Cdd:TIGR00606 498 TLKKEVKSLQNEKADLDRKLRKLDQEMEQLNhhtttrTQMEMLTKDKMDKDEQIRKIKSRHS-------DELTSLLGYFP 570
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 432 HSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQfSDSKQHIEVLKESLT 511
Cdd:TIGR00606 571 NKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGS-QDEESDLERLKEEIE 649
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 512 AKEQRAAILQTEVDALRLRLEEketmLNKKTKQIQDMAEEKGTQAGEIHDLKDMLdvkERKVNVLQKKIENLQEQLRDKE 591
Cdd:TIGR00606 650 KSSKQRAMLAGATAVYSQFITQ----LTDENQSCCPVCQRVFQTEAELQEFISDL---QSKLRLAPDKLKSTESELKKKE 722
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 592 KQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEqrDRDEREKQEEidtykkDLKDLKEKVSLLQGDLSEK 671
Cdd:TIGR00606 723 KRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKN--DIEEQETLLG------TIMPEEESAKVCLTDVTIM 794
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 672 EASLLDLKEHASSLASSGLKKDSRLKTLEIA-LEQKKEEclKMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDE 750
Cdd:TIGR00606 795 ERFQMELKDVERKIAQQAAKLQGSDLDRTVQqVNQEKQE--KQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSE 872
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 751 SSKAQTEVDRLLEILKEVEnekndkdKKIAELESLTsRQVKDQNKKVANLkhkEQVEKKKSAQMLEEARRREDSLSDSSQ 830
Cdd:TIGR00606 873 KLQIGTNLQRRQQFEEQLV-------ELSTEVQSLI-REIKDAKEQDSPL---ETFLEKDQQEKEELISSKETSNKKAQD 941
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 831 QLQDsLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAekQVEELLMAMEKVKQELESMKAKLSSTQQ------ 904
Cdd:TIGR00606 942 KVND-IKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNA--QLEECEKHQEKINEDMRLMRQDIDTQKIqerwlq 1018
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2035341231 905 ---SLAEKETHLTNLRAERRKHLEEVLEMKqeallaaisekdaniaLLELSSSKKKTQEEVAALKREKDRLVQQLKQ 978
Cdd:TIGR00606 1019 dnlTLRKRENELKEVEEELKQHLKEMGQMQ----------------VLQMKQEHQKLEENIDLIKRNHVLALGRQKG 1079
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
697-852 |
4.95e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 4.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 697 KTLEIALEQKKEECLKMESQlKKAHEATLEARASPEMSDRIQQLEREmarykdesskaqteVDRLLEILKEVENEKNDKD 776
Cdd:COG2433 376 LSIEEALEELIEKELPEEEP-EAEREKEHEERELTEEEEEIRRLEEQ--------------VERLEAEVEELEAELEEKD 440
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2035341231 777 KKIAELEsltsrqvkdqnkkvanlkhkEQVEKKKSAQMLEEARRREDSLSDSS-QQLQDSLRKKDDRIEELEEALRE 852
Cdd:COG2433 441 ERIERLE--------------------RELSEARSEERREIRKDREISRLDREiERLERELEEERERIEELKRKLER 497
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
813-979 |
5.06e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 5.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 813 QMLEEARRREDSLSDSsQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEEsartnaekqveellmaMEKVKQEL 892
Cdd:COG4913 242 EALEDAREQIELLEPI-RELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAE----------------LEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 893 ESMKAKLSSTQQSLAEKETHLTNLRAERRKH---LEEVLEMKQEALLAAISEKDANIALLE-----LSSSKKKTQEEVAA 964
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEAQIRGNggdRLEQLEREIERLERELEERERRRARLEallaaLGLPLPASAEEFAA 384
|
170
....*....|....*
gi 2035341231 965 LKREKDRLVQQLKQQ 979
Cdd:COG4913 385 LRAEAAALLEALEEE 399
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
564-798 |
5.54e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 5.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 564 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDERek 643
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 644 qeeiDTYKKDLKDLKEKVSLLQGDLSEkeasLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEA 723
Cdd:COG3883 94 ----ALYRSGGSVSYLDVLLGSESFSD----FLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAE 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2035341231 724 TLEARAspEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVA 798
Cdd:COG3883 166 LEAAKA--ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
825-988 |
5.57e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 5.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 825 LSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQ 904
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 905 SLAEKETHLTNLRAERRKHLEEVLEMKQ----EALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQT 980
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
....*...
gi 2035341231 981 QNRMKLMA 988
Cdd:COG4942 171 AERAELEA 178
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
192-838 |
5.85e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.72 E-value: 5.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 192 PELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQdsssrtgepcvaelteENFQRLH 271
Cdd:TIGR00618 297 AHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQ----------------EIHIRDA 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 272 AEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKglsaKATEEDHERTRRLAEAEMHVHHLESLLE 351
Cdd:TIGR00618 361 HEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQRE----QATIDTRTSAFRDLQGQLAHAKKQQELQ 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 352 QKEKEnnmlreemhrrfenapdsAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSteEREEEMKQMEVYRs 431
Cdd:TIGR00618 437 QRYAE------------------LCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIH--LQETRKKAVVLAR- 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 432 hskfmknKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKqeLSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLT 511
Cdd:TIGR00618 496 -------LLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRR--MQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQ 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 512 AKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMldvkerkvnvLQKKIENLQEQLRDKE 591
Cdd:TIGR00618 567 EIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRK----------LQPEQDLQDVRLHLQQ 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 592 KQMSslkERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQgdlsEK 671
Cdd:TIGR00618 637 CSQE---LALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLR----EL 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 672 EASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEEcLKMESQLKKAHEATLEARASPEMSDRIQQL--EREMARYKD 749
Cdd:TIGR00618 710 ETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKE-LMHQARTVLKARTEAHFNNNEEVTAALQTGaeLSHLAAEIQ 788
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 750 ESSKAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSS 829
Cdd:TIGR00618 789 FFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQ 868
|
....*....
gi 2035341231 830 QQLQDSLRK 838
Cdd:TIGR00618 869 AKIIQLSDK 877
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
328-566 |
6.09e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 6.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 328 EDHERTRRLAE-AEMHVHHLESLLEQKEKENNMLREEMHRRFENAPdsAKTKALQTVIEMKDSKISSMERGLRDLEEEIQ 406
Cdd:COG4913 235 DDLERAHEALEdAREQIELLEPIRELAERYAAARERLAELEYLRAA--LRLWFAQRRLELLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 407 mlksngalSTEEREEEMKQmevyrshskfmknKVEQLKEELSSKDAQgeelkkRAAGLQSEIGQVKQELSRKDTELLALQ 486
Cdd:COG4913 313 --------RLEARLDALRE-------------ELDELEAQIRGNGGD------RLEQLEREIERLERELEERERRRARLE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 487 TKLETLTNQFSDSKQ----HIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDL 562
Cdd:COG4913 366 ALLAALGLPLPASAEefaaLRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL 445
|
....
gi 2035341231 563 KDML 566
Cdd:COG4913 446 RDAL 449
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
703-989 |
6.16e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 6.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 703 LEQKKEECLKMESQLKKAHEATLEAR---------ASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVEN--- 770
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQRekekerykrDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSAsse 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 771 -----------EKNDKDKKIAELE----SLTSR---------QVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLS 826
Cdd:pfam07888 112 elseekdallaQRAAHEARIRELEedikTLTQRvlereteleRMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLS 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 827 DSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQeesartnaekqveellmaMEKVKQELESMKAKLSSTQQSL 906
Cdd:pfam07888 192 KEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAE------------------NEALLEELRSLQERLNASERKV 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 907 AEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLE-----------LSSSKKKTQEEVAALKREKDRLVQQ 975
Cdd:pfam07888 254 EGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREgrarwaqeretLQQSAEADKDRIEKLSAELQRLEER 333
|
330
....*....|....
gi 2035341231 976 LKQQTQNRMKLMAD 989
Cdd:pfam07888 334 LQEERMEREKLEVE 347
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
532-641 |
6.31e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 6.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 532 EEKETMLNKKTKQIQDMAEEKGTQAG-EIHDLKDMLdvkERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTN 610
Cdd:PRK12704 38 EEAKRILEEAKKEAEAIKKEALLEAKeEIHKLRNEF---EKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEK 114
|
90 100 110
....*....|....*....|....*....|..
gi 2035341231 611 TDTALTTLEEALADKERTIERL-KEQRDRDER 641
Cdd:PRK12704 115 KEKELEQKQQELEKKEEELEELiEEQLQELER 146
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
375-535 |
7.54e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 375 AKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSK------FMKNKVEQLKEELS 448
Cdd:COG4942 48 KEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAellralYRLGRQPPLALLLS 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 449 SKD-------------------AQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKES 509
Cdd:COG4942 128 PEDfldavrrlqylkylaparrEQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKE 207
|
170 180
....*....|....*....|....*.
gi 2035341231 510 LTAKEQRAAILQTEVDALRLRLEEKE 535
Cdd:COG4942 208 LAELAAELAELQQEAEELEALIARLE 233
|
|
| PRK08475 |
PRK08475 |
F0F1 ATP synthase subunit B; Validated |
922-993 |
8.83e-03 |
|
F0F1 ATP synthase subunit B; Validated
Pssm-ID: 236272 [Multi-domain] Cd Length: 167 Bit Score: 38.46 E-value: 8.83e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2035341231 922 KHLEEVlemkQEALLAAISEKDAniALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYED 993
Cdd:PRK08475 60 KRLEEI----QEKLKESKEKKED--ALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEE 125
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
331-772 |
9.61e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 9.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 331 ERTRRLAEAEMHVHHLESLLEQKEKENNMLREE---MHRRFENAPDSAKTKALQTVIEMKDSKISSMERG---LRDLEEE 404
Cdd:COG4717 85 EKEEEYAELQEELEELEEELEELEAELEELREElekLEKLLQLLPLYQELEALEAELAELPERLEELEERleeLRELEEE 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 405 IQMLKSNGALSTEEREEEMKQMEVYrshskfMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLA 484
Cdd:COG4717 165 LEELEAELAELQEELEELLEQLSLA------TEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEA 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 485 LQ-----TKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEI 559
Cdd:COG4717 239 AAleerlKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEE 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 560 HDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRD 639
Cdd:COG4717 319 EELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQ 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 640 EREKQeeidtykkdlkdlkekVSLLQGDLSEKEASLLDLKEHASslASSGLKKDSRLKTLEIALEQKKEECLKMESQLKK 719
Cdd:COG4717 399 ELKEE----------------LEELEEQLEELLGELEELLEALD--EEELEEELEELEEELEELEEELEELREELAELEA 460
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 2035341231 720 AHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEK 772
Cdd:COG4717 461 ELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
431-906 |
9.92e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 39.88 E-value: 9.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 431 SHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESl 510
Cdd:PRK01156 183 SNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTA- 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 511 takEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDML---DVKERKVNVLQKKIENLQ--- 584
Cdd:PRK01156 262 ---ESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILsniDAEINKYHAIIKKLSVLQkdy 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 585 EQLRDKEKQMSSLKERVKSLQadttntdtaltTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLL 664
Cdd:PRK01156 339 NDYIKKKSRYDDLNNQILELE-----------GYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 665 QGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLE--IALEQKKEECLKMESQLKKAHEATLEARASPEMS---DRIQQ 739
Cdd:PRK01156 408 KKELNEINVKLQDISSKVSSLNQRIRALRENLDELSrnMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSrleEKIRE 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 740 LEREMARYKDESSKAQTEVDRLL-EILKEVENEKNDKDKKIAELESLtsrQVKDQNKKVANLKHKEQVEKKKSAQMLEEA 818
Cdd:PRK01156 488 IEIEVKDIDEKIVDLKKRKEYLEsEEINKSINEYNKIESARADLEDI---KIKINELKDKHDKYEEIKNRYKSLKLEDLD 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341231 819 RRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAK 898
Cdd:PRK01156 565 SKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKIL 644
|
....*...
gi 2035341231 899 LSSTQQSL 906
Cdd:PRK01156 645 IEKLRGKI 652
|
|
| |
