|
Name |
Accession |
Description |
Interval |
E-value |
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
220-656 |
0e+00 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 608.98 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 220 KPLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNSKKHsirFVTLSATNAKTND 299
Cdd:COG2256 13 APLAERMRPRTLDEVVGQEHLLGPGKPLRRAIEAGRLSSMILWGPPGTGKTTLARLIANATDAE---FVALSAVTSGVKD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 300 VRDVIKQAQNEKSFfKRKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENPSFQVNTALLSRCRVIVLEKLPVEA 379
Cdd:COG2256 90 IREVIEEARERRAY-GRRTILFVDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNSALLSRCRVFVLKPLSEED 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 380 MVTILMRAinslgihvldssrptdpLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLArlssrkmfckk 459
Cdd:COG2256 169 LEQLLERA-----------------LADDERGLGGYKLELDDEALEALARLADGDARRALNALELAVLS----------- 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 460 sgqTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFAS 539
Cdd:COG2256 221 ---APPDGVIEITLELVEEALQRRALRYDKDGDEHYDLISAFIKSIRGSDPDAALYWLARMLEAGEDPRFIARRLVIMAS 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 540 EDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNVKACLRshQGPLPPVPLHLRNAPTR 619
Cdd:COG2256 298 EDIGLADPQALQIAVAAAQAVERLGMPEGRIALAQAVIYLATAPKSNAAYLAINAALADVR--EGGSLPVPLHLRNAPTK 375
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 27229310 620 LMKDLGYGKGYKYnpMYSEP---VDQDYLPEELRGVDFFK 656
Cdd:COG2256 376 LMKELGYGKGYKY--PHDYPggyVGQQYLPDELKGRRYYE 413
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
221-656 |
0e+00 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 598.61 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 221 PLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNSKKHsirFVTLSATNAKTNDV 300
Cdd:PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP---FEALSAVTSGVKDL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 301 RDVIKQAQNEKSFfKRKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENPSFQVNTALLSRCRVIVLEKLPVEAM 380
Cdd:PRK13342 78 REVIEEARQRRSA-GRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 381 VTILMRAINslgihvlDSSRPTDPlshssncssepsvfIEDKAVDTLAYLSDGDARTGLNGLQLAVLarlssrkmfckks 460
Cdd:PRK13342 157 EQLLKRALE-------DKERGLVE--------------LDDEALDALARLANGDARRALNLLELAAL------------- 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 461 gqtyspSRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASE 540
Cdd:PRK13342 203 ------GVDSITLELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASE 276
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 541 DIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNVKACLRshQGPLPPVPLHLRNAPTRL 620
Cdd:PRK13342 277 DIGLADPNALQVAVAAADAVERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAALADVR--EGGSLPVPLHLRNAPTKL 354
|
410 420 430
....*....|....*....|....*....|....*....
gi 27229310 621 MKDLGYGKGYKYnpMYSEP---VDQDYLPEELRGVDFFK 656
Cdd:PRK13342 355 MKELGYGKGYKY--PHDYPngyVGQQYLPDELKGKRYYE 391
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
220-655 |
3.45e-135 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 413.30 E-value: 3.45e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 220 KPLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNSKKHsirFVTLSATNAKTND 299
Cdd:PRK13341 16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAH---FSSLNAVLAGVKD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 300 VRDVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENPSFQVNTALLSRCRVIVLEKLPVEA 379
Cdd:PRK13341 93 LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDED 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 380 MVTILMRAINslgihvlDSSRPTDPLShssncssepsVFIEDKAVDTLAYLSDGDARTGLNGLQLAVlarlssrkmfckk 459
Cdd:PRK13341 173 LHQLLKRALQ-------DKERGYGDRK----------VDLEPEAEKHLVDVANGDARSLLNALELAV------------- 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 460 sgQTYSP---SRVLITENDVKEGLQRSHILYDRAGEEHYNCISALHKAMRGSDQNASLYWLARMLEGGEDPLYVARRLVR 536
Cdd:PRK13341 223 --ESTPPdedGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLI 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 537 FASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSIEVYSAYNNVKAClrsHQGPLPPVPLHLRNa 616
Cdd:PRK13341 301 AASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLAQAALYLATAPKSNSVLGFFDALKKV---REEQVQDVPNHLRD- 376
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 27229310 617 PTRLMKDLGYGKGYKYNPMYSEP-VDQDYLPEELRGVDFF 655
Cdd:PRK13341 377 ANRDGKAFGDGVGYRYPHAFRDHwVAQQYLPEALQGEVFW 416
|
|
| MgsA_C |
pfam12002 |
MgsA AAA+ ATPase C terminal; The MgsA protein possesses DNA-dependent ATPase and ssDNA ... |
507-656 |
1.96e-80 |
|
MgsA AAA+ ATPase C terminal; The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication. Additionally, MgsA may play a role in chromosomal segregation. This is consistent with a report that MgsA co-localizes with the replisome and affects chromosome segregation. This domain represents the C terminal region of MgsA.
Pssm-ID: 463426 [Multi-domain] Cd Length: 158 Bit Score: 251.49 E-value: 1.96e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 507 GSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQCVVYFARAPKSI 586
Cdd:pfam12002 1 GSDPDAALYWLARMLEAGEDPLFIARRLVIIASEDIGLADPQALVVAVAAAQAVERIGMPEARIPLAQAVIYLALAPKSN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 27229310 587 EVYSAYNNVKACLRshQGPLPPVPLHLRNAPTRLMKDLGYGKGYKYNPMYSE-PVDQDYLPEELRGVDFFK 656
Cdd:pfam12002 81 SAYLAIDAALADVR--EGGSLPVPLHLRNAPTKLMKKLGYGKGYKYPHDYPNgYVKQQYLPDELKGRRYYE 149
|
|
| PRK14700 |
PRK14700 |
recombination factor protein RarA; Provisional |
337-650 |
1.70e-45 |
|
recombination factor protein RarA; Provisional
Pssm-ID: 173163 [Multi-domain] Cd Length: 300 Bit Score: 164.03 E-value: 1.70e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 337 LPHVECGTITLIGATTENPSFQVNTALLSRCRVIVLEKLPVEAMVTILMRAINSlgihvldssrptdplshsSNCSSEPS 416
Cdd:PRK14700 1 MPYVESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQ------------------DEVLAKHK 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 417 VFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARLSSRKMFCKKSgqtyspsrvlITENDVKEGLQRSHilydRAGEEHYN 496
Cdd:PRK14700 63 FKIDDGLYNAMHNYNEGDCRKILNLLERMFLISTRGDEIYLNKE----------LFDQAVGETSRDFH----REGKEFYE 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 497 CISALHKAMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALAQAVAAYQGCHFIGMPECEVLLAQCV 576
Cdd:PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAA 208
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 27229310 577 VYFARAPKSIEVYSAYNNVKACLRShQGPLpPVPLHLRNaptrlMKDLGYGKGYKYNPMYsepVDQDYLPEELR 650
Cdd:PRK14700 209 IYLAVAPKSNACYKALAQAQQLVKS-LGNI-DVPQHLKN-----YKDSNYLYPHNYPNSY---VIQQYLPDNII 272
|
|
| AAA_assoc_2 |
pfam16193 |
AAA C-terminal domain; AAA_assoc_2 is found at the C-terminus of a relatively small set of AAA ... |
417-506 |
3.03e-28 |
|
AAA C-terminal domain; AAA_assoc_2 is found at the C-terminus of a relatively small set of AAA domains in proteins ranging from archaeal to fungi, plants and mammals.
Pssm-ID: 465057 Cd Length: 81 Bit Score: 107.94 E-value: 3.03e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 417 VFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARLSSRKmfckksgqtyspsRVLITENDVKEGLQRSHILYDRAGEEHYN 496
Cdd:pfam16193 5 IELDDEALEALAELADGDARRALNALELAVLSTPPDDG-------------GIHITLEILEEALQRKALRYDKDGDEHYD 71
|
90
....*....|
gi 27229310 497 CISALHKAMR 506
Cdd:pfam16193 72 LISAFHKSIR 81
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
235-371 |
1.58e-21 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 91.44 E-value: 1.58e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 235 IGQSRAVGQetlLRSLLETNEIPSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFF 314
Cdd:cd00009 1 VGQEEAIEA---LREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLF 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 315 KRK-----TILFIDEIHRFNKSQQDTFLP--------HVECGTITLIGATTENPSFQVNTALLSRCRVIV 371
Cdd:cd00009 78 ELAekakpGVLFIDEIDSLSRGAQNALLRvletlndlRIDRENVRVIGATNRPLLGDLDRALYDRLDIRI 147
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
259-372 |
2.04e-19 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 84.57 E-value: 2.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 259 LILWGPPGCGKTTLAHIIANNSKkhsIRFVTLSATN-------AKTNDVRDVIKQAQNeksffKRKTILFIDEIHRFNKS 331
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELG---APFIEISGSElvskyvgESEKRLRELFEAAKK-----LAPCVIFIDEIDALAGS 72
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 27229310 332 Q-----------QDTFLPHVE-----CGTITLIGATTEnpSFQVNTALLSRCRVIVL 372
Cdd:pfam00004 73 RgsggdsesrrvVNQLLTELDgftssNSKVIVIAATNR--PDKLDPALLGRFDRIIE 127
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
221-482 |
1.13e-16 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 83.05 E-value: 1.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 221 PLADKMRPDTLQDYIGQSRAVGQ-ETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANnskkhSIRF--VTLSATNAKT 297
Cdd:PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQlREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAN-----DYGWevIELNASDQRT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 298 NDV-RDVIKQAQNEKSFF-KRKTILFIDE---IHrfnkSQQDTflphvecG---TITLIGATTENPSfqVNTA------- 362
Cdd:PRK04195 78 ADViERVAGEAATSGSLFgARRKLILLDEvdgIH----GNEDR-------GgarAILELIKKAKQPI--ILTAndpydps 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 363 ---LLSRCRVIVLEKLPVEAMVTILmRAInslgihvldssrptdplshssnCSSEpSVFIEDKAVDTLAYLSDGDARTGL 439
Cdd:PRK04195 145 lreLRNACLMIEFKRLSTRSIVPVL-KRI----------------------CRKE-GIECDDEALKEIAERSGGDLRSAI 200
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 27229310 440 NGLQLAVLARLSsrkmfckksgqtyspsrvlITENDVKEGLQR 482
Cdd:PRK04195 201 NDLQAIAEGYGK-------------------LTLEDVKTLGRR 224
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
227-393 |
1.38e-16 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 81.28 E-value: 1.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 227 RPDTLQDYIGQSRAVGQ-ETLLRSLLETNE-IPSLILWGPPGCGKTTLAHIIANNSKKhSIRfVT----------LSA-- 292
Cdd:COG2255 23 RPKRLDEYIGQEKVKENlKIFIEAAKKRGEaLDHVLLYGPPGLGKTTLAHIIANEMGV-NIR-ITsgpaiekpgdLAAil 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 293 TNAKTNDVrdvikqaqneksffkrktiLFIDEIHRFNKSQQDTFLPHVECGTI--------------------TLIGATT 352
Cdd:COG2255 101 TNLEEGDV-------------------LFIDEIHRLSRVVEEILYPAMEDFRLdivigkgpaarsirldlppfTLVGATT 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 27229310 353 enpsfqvNTALLS---RCRVIVLEKL---PVEAMVTILMRAINSLGI 393
Cdd:COG2255 162 -------RAGLLTsplRDRFGIVLRLefyTVEELAEIVKRSARILGV 201
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
226-393 |
1.46e-16 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 81.33 E-value: 1.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 226 MRPDTLQDYIGQSRAVGQ-ETLLRSLLETNEIPS-LILWGPPGCGKTTLAHIIAN--NSKkhsirFVTLSA--------- 292
Cdd:PRK00080 19 LRPKSLDEFIGQEKVKENlKIFIEAAKKRGEALDhVLLYGPPGLGKTTLANIIANemGVN-----IRITSGpalekpgdl 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 293 ----TNAKTNDVrdvikqaqneksffkrktiLFIDEIHRFNKSQQDTFLPHVECGTI--------------------TLI 348
Cdd:PRK00080 94 aailTNLEEGDV-------------------LFIDEIHRLSPVVEEILYPAMEDFRLdimigkgpaarsirldlppfTLI 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 27229310 349 GATTEnpsfqvnTALLS---RCR---VIVLEKLPVEAMVTILMRAINSLGI 393
Cdd:PRK00080 155 GATTR-------AGLLTsplRDRfgiVQRLEFYTVEELEKIVKRSARILGV 198
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
226-352 |
2.26e-15 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 74.07 E-value: 2.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 226 MRPDTLQDYIGQSRAVGQ-ETLLRSLLETNEIPS-LILWGPPGCGKTTLAHIIANNSKKhSIRfVT----------LSA- 292
Cdd:pfam05496 1 LRPRTLDEYIGQEKVKENlKIFIEAAKQRGEALDhVLLYGPPGLGKTTLANIIANEMGV-NIR-ITsgpaierpgdLAAi 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 293 -TNAKTNDVrdvikqaqneksffkrktiLFIDEIHRFNKSQQDTFLPHVECGTI--------------------TLIGAT 351
Cdd:pfam05496 79 lTNLEPGDV-------------------LFIDEIHRLNRAVEEILYPAMEDFRLdivigkgpsarsirldlppfTLVGAT 139
|
.
gi 27229310 352 T 352
Cdd:pfam05496 140 T 140
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
228-439 |
1.01e-13 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 72.92 E-value: 1.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 228 PDTLQDYIGQSRAVgqETLLRSLlETNEIP-SLILWGPPGCGKTTLAHIIA---N-------------------NSKKHS 284
Cdd:COG2812 6 PQTFDDVVGQEHVV--RTLKNAL-ASGRLAhAYLFTGPRGVGKTTLARILAkalNcengptgepcgecescraiAAGSHP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 285 -IRFVTLSATNAKTNDVRDVIKQAQNeKSFFKRKTILFIDEIHRFNKSQQDTFL-------PHVecgtiTLIGATTEnPS 356
Cdd:COG2812 83 dVIEIDAEASNIGVDDIRELIEKVSY-APVEGRYKVYIIDEAHMLTTEAFNALLktleeppPHV-----VFILATTE-PQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 357 fQV-NTaLLSRCRVIVLEKLPVEAMVTILMRAINSLGIHvldssrptdplshssncssepsvfIEDKAVDTLAYLSDGDA 435
Cdd:COG2812 156 -KLlPT-ILSRCQRFDFRRLPPEEIAEHLAKIAEREGIE------------------------IEPEALALIARAADGSM 209
|
....
gi 27229310 436 RTGL 439
Cdd:COG2812 210 RDAL 213
|
|
| ruvB |
TIGR00635 |
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions ... |
230-393 |
3.93e-13 |
|
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129721 [Multi-domain] Cd Length: 305 Bit Score: 70.79 E-value: 3.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 230 TLQDYIGQSRAVGQETL-LRSLLETNEIPS-LILWGPPGCGKTTLAHIIANNSKKhSIRfVTLSATNAKTNDVRDVIkqa 307
Cdd:TIGR00635 2 LLAEFIGQEKVKEQLQLfIEAAKMRQEALDhLLLYGPPGLGKTTLAHIIANEMGV-NLK-ITSGPALEKPGDLAAIL--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 308 qnekSFFKRKTILFIDEIHRFNKSQQDTFLPHVE-------------CGTI-------TLIGATTEnpSFQVNTALLSRC 367
Cdd:TIGR00635 77 ----TNLEEGDVLFIDEIHRLSPAVEELLYPAMEdfrldivigkgpsARSVrldlppfTLVGATTR--AGMLTSPLRDRF 150
|
170 180
....*....|....*....|....*..
gi 27229310 368 RVIV-LEKLPVEAMVTILMRAINSLGI 393
Cdd:TIGR00635 151 GIILrLEFYTVEELAEIVSRSAGLLNV 177
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
225-370 |
1.20e-12 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 69.25 E-value: 1.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 225 KMRPDTLQDYIGQSravGQETLLRSLLETNEIPSLILWGP-PGCGKTTLAHIIANNSkkhSIRFVTLSATNAKTNDVRDV 303
Cdd:PHA02544 14 KYRPSTIDECILPA---ADKETFKSIVKKGRIPNMLLHSPsPGTGKTTVAKALCNEV---GAEVLFVNGSDCRIDFVRNR 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 27229310 304 IKQAQNEKSFFKRKTILFIDEIHRfnksqqdTFLPHVECGTITLIGATTENPSF--------QVNTALLSRCRVI 370
Cdd:PHA02544 88 LTRFASTVSLTGGGKVIIIDEFDR-------LGLADAQRHLRSFMEAYSKNCSFiitannknGIIEPLRSRCRVI 155
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
225-443 |
2.15e-12 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 70.26 E-value: 2.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 225 KMRPDTLQDYIGQSRAvgQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIA--------------NN-------SKKH 283
Cdd:PRK05896 9 KYRPHNFKQIIGQELI--KKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAkainclnpkdgdccNScsvcesiNTNQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 284 SIRFVTL-SATNAKTNDVRDVIKQAQNEKSFFKRKtILFIDEIHRFNKSQQDTFLPHVE--CGTITLIGATTEnpSFQVN 360
Cdd:PRK05896 87 SVDIVELdAASNNGVDEIRNIIDNINYLPTTFKYK-VYIIDEAHMLSTSAWNALLKTLEepPKHVVFIFATTE--FQKIP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 361 TALLSRCRVIVLEKLPveamvtilmraiNSLGIHVLDssrptdplshssNCSSEPSVFIEDKAVDTLAYLSDGDARTGLN 440
Cdd:PRK05896 164 LTIISRCQRYNFKKLN------------NSELQELLK------------SIAKKEKIKIEDNAIDKIADLADGSLRDGLS 219
|
...
gi 27229310 441 GLQ 443
Cdd:PRK05896 220 ILD 222
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
258-375 |
3.33e-12 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 64.70 E-value: 3.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 258 SLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFF----------------KRKTILF 321
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASgsgelrlrlalalarkLKPDVLI 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 27229310 322 IDEIHRFNKSQQD----------TFLPHVECGTITLIGATTENPSFQVNTALLSRCRVIVLEKL 375
Cdd:smart00382 84 LDEITSLLDAEQEallllleelrLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
221-443 |
4.44e-12 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 67.45 E-value: 4.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 221 PLADKMRPDTLQDYIGQSRAVGQetlLRSLLETNEIPSLILWGPPGCGKTT----LAHIIANNSKKHSIrfVTLSATNAK 296
Cdd:PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSR---LQVIARDGNMPNLILSGPPGTGKTTsilaLAHELLGPNYKEAV--LELNASDDR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 297 TND-VRDVIKQ-AQNEKSFFK-RKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTENPSFQVNTALLSRCRVIVLE 373
Cdd:PLN03025 77 GIDvVRNKIKMfAQKKVTLPPgRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFS 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 374 KLPVEAMVTILMRAinslgihvldssrptdplshssnCSSEpSVFIEDKAVDTLAYLSDGDARTGLNGLQ 443
Cdd:PLN03025 157 RLSDQEILGRLMKV-----------------------VEAE-KVPYVPEGLEAIIFTADGDMRQALNNLQ 202
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
223-506 |
8.87e-12 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 67.21 E-value: 8.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 223 ADKMRPDTLQDYIGQSRAVgqeTLLRSLLETNEIPSLILW-GPPGCGKTTLAHIIA-----------NNSKKHSIrFVTL 290
Cdd:PRK14970 8 ARKYRPQTFDDVVGQSHIT---NTLLNAIENNHLAQALLFcGPRGVGKTTCARILArkinqpgyddpNEDFSFNI-FELD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 291 SATNAKTNDVRDVIKQAQNEKSFFKRKtILFIDEIHRFNKSQQDTFLPHVE--CGTITLIGATTENpsFQVNTALLSRCR 368
Cdd:PRK14970 84 AASNNSVDDIRNLIDQVRIPPQTGKYK-IYIIDEVHMLSSAAFNAFLKTLEepPAHAIFILATTEK--HKIIPTILSRCQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 369 VIVLEKLPVEamvtilmrainslgihvldssrptDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGlnglqLAVLA 448
Cdd:PRK14970 161 IFDFKRITIK------------------------DIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDA-----LSIFD 211
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 27229310 449 RLSSrkmFCKKS--------------GQTYSPSRVLITENDVKEGLqrshILYD---RAGEEHYNCISALHKAMR 506
Cdd:PRK14970 212 RVVT---FCGKNitrqavtenlnildYDTYINVTDLILENKIPELL----LAFNeilRKGFDGHHFIAGLASHFR 279
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
222-394 |
9.38e-12 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 68.20 E-value: 9.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 222 LADKMRPDTLQDYIGQSRAVgqETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANN------------------SKKH 283
Cdd:PRK08691 6 LARKWRPKTFADLVGQEHVV--KALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSlncenaqhgepcgvcqscTQID 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 284 SIRFVTL----SATNAKTNDVRDVIKQAQNEKSFFKRKtILFIDEIHRFNKSQQDTFLPHVE--CGTITLIGATTEnpSF 357
Cdd:PRK08691 84 AGRYVDLleidAASNTGIDNIREVLENAQYAPTAGKYK-VYIIDEVHMLSKSAFNAMLKTLEepPEHVKFILATTD--PH 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 27229310 358 QVNTALLSRCRVIVLEKLPVEAMVTILMRAINSLGIH 394
Cdd:PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
223-445 |
1.64e-11 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 66.05 E-value: 1.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 223 ADKMRPDTLQDYIGQSRAVGQetlLRSLLETNEIPSLILWGPPGCGKTTLAHIIA-----NNSKKHsirFVTLSATNAKT 297
Cdd:PRK00440 8 VEKYRPRTLDEIVGQEEIVER---LKSYVKEKNMPHLLFAGPPGTGKTTAALALArelygEDWREN---FLELNASDERG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 298 NDV-RDVIKQAQNEKSF----FKrktILFIDEIHRFNKSQQdtflpHVECGTITLIGATTE-----NPSFQVNTALLSRC 367
Cdd:PRK00440 82 IDViRNKIKEFARTAPVggapFK---IIFLDEADNLTSDAQ-----QALRRTMEMYSQNTRfilscNYSSKIIDPIQSRC 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 27229310 368 RVIVLEKLPVEAMVTILmRAInslgihvldssrptdplshssnCSSEpSVFIEDKAVDTLAYLSDGDARTGLNGLQLA 445
Cdd:PRK00440 154 AVFRFSPLKKEAVAERL-RYI----------------------AENE-GIEITDDALEAIYYVSEGDMRKAINALQAA 207
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
221-480 |
2.66e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 66.39 E-value: 2.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 221 PLADKMRPDTLQDYIGQSRAVgqeTLLRSLLETNEIPS-LILWGPPGCGKTTLAHIIAN--NSKK-------------HS 284
Cdd:PRK14953 5 PFARKYRPKFFKEVIGQEIVV---RILKNAVKLQRVSHaYIFAGPRGTGKTTIARILAKvlNCLNpqegepcgkcencVE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 285 IR---FVTL----SATNAKTNDVRdVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVE---CGTItLIGATTEn 354
Cdd:PRK14953 82 IDkgsFPDLieidAASNRGIDDIR-ALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEeppPRTI-FILCTTE- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 355 pSFQVNTALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHvldssrptdplshssncssepsvfIEDKAVDTLAYLSDGD 434
Cdd:PRK14953 159 -YDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE------------------------YEEKALDLLAQASEGG 213
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 27229310 435 ARTGLNGLQLAVlarlssrkmfckksgqTYSPSRVliTENDVKEGL 480
Cdd:PRK14953 214 MRDAASLLDQAS----------------TYGEGKV--TIKVVEEFL 241
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
259-384 |
1.97e-10 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 63.01 E-value: 1.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 259 LILWGPPGCGKTTLAHIIANNSKKHSIRfVTLSA--------TNAKtndVRDVIKQAQNEKsffkrKTILFIDEI----- 325
Cdd:COG0464 194 LLLYGPPGTGKTLLARALAGELGLPLIE-VDLSDlvskyvgeTEKN---LREVFDKARGLA-----PCVLFIDEAdalag 264
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 27229310 326 ------HRFNKSQQDTFLPHVECGT--ITLIGATteNPSFQVNTALLSRCRVIVLEKLP-VEAMVTIL 384
Cdd:COG0464 265 krgevgDGVGRRVVNTLLTEMEELRsdVVVIAAT--NRPDLLDPALLRRFDEIIFFPLPdAEERLEIF 330
|
|
| HLD_clamp_RarA |
cd18139 |
helical lid domain of recombination factor protein RarA; Recombination factor RarA ... |
375-481 |
2.36e-10 |
|
helical lid domain of recombination factor protein RarA; Recombination factor RarA (Replication associated recombination gene/protein A, also known as MgsA (Maintenance of genome stability A) or Mgs1 in yeast and WRNIP1 in mammals) is a member of the clamp-loader clade of the AAA+ superfamily. It functions as a tetramer. RarA co-localize with the replication fork throughout the cell cycle and may play a role in the rescue of stalled replication forks.
Pssm-ID: 350841 [Multi-domain] Cd Length: 75 Bit Score: 56.87 E-value: 2.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 375 LPVEAMVTILMRAINSLGIHvldssrptdplshssncsSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVLARLSSRk 454
Cdd:cd18139 1 LSEEDLEKLLKRALEDKERG------------------GDRKVTIDDEALELLAEAADGDARSALNLLELAVLSAEEDG- 61
|
90 100
....*....|....*....|....*..
gi 27229310 455 mfckksgqtyspsRVLITENDVKEGLQ 481
Cdd:cd18139 62 -------------GIVITLEDLEEVLQ 75
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
224-448 |
7.32e-10 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 61.16 E-value: 7.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 224 DKMRPDTLQDYIGQSRAVGQetlLRSLLETNEIPSLILWGPPGCGKTT----LAHIIANNSKKHSI-------------- 285
Cdd:PRK12402 7 EKYRPALLEDILGQDEVVER---LSRAVDSPNLPHLLVQGPPGSGKTAavraLARELYGDPWENNFtefnvadffdqgkk 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 286 ------RFVTLSATNAKTN-DVRDVIKQAQNEKSFFKR-----KTILFiDEIHRFNKSQQDTFLPHVE--CGTITLIGAT 351
Cdd:PRK12402 84 ylvedpRFAHFLGTDKRIRsSKIDNFKHVLKEYASYRPlsadyKTILL-DNAEALREDAQQALRRIMEqySRTCRFIIAT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 352 TeNPSfQVNTALLSRCRVIVLEKLPVEAMVTILmrainslgIHVLDSSRptdplshssncssepsVFIEDKAVDTLAYLS 431
Cdd:PRK12402 163 R-QPS-KLIPPIRSRCLPLFFRAPTDDELVDVL--------ESIAEAEG----------------VDYDDDGLELIAYYA 216
|
250
....*....|....*..
gi 27229310 432 DGDARTGLNGLQLAVLA 448
Cdd:PRK12402 217 GGDLRKAILTLQTAALA 233
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
208-325 |
9.31e-10 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 60.41 E-value: 9.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 208 LPAEEIRQMLEGKPLADKMRPDTLQDYIGqsravGQETLLRSLLETNEIP----------------SLILWGPPGCGKTT 271
Cdd:COG1222 53 ANLTQKRLGTPRGTAVPAESPDVTFDDIG-----GLDEQIEEIREAVELPlknpelfrkygieppkGVLLYGPPGTGKTL 127
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 27229310 272 LAHIIANNSKKHSIR---------FVTLSATNaktndVRDVIKQAQNeksffKRKTILFIDEI 325
Cdd:COG1222 128 LAKAVAGELGAPFIRvrgselvskYIGEGARN-----VREVFELARE-----KAPSIIFIDEI 180
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
222-488 |
4.26e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 59.41 E-value: 4.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 222 LADKMRPDTLQDYIGQSRAVgqeTLLRSLLETNEIP-SLILWGPPGCGKTTLAHIIA----------------------- 277
Cdd:PRK14964 3 LALKYRPSSFKDLVGQDVLV---RILRNAFTLNKIPqSILLVGASGVGKTTCARIISlclncsngptsdpcgtchncisi 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 278 -NNSKKHSIRFVtlSATNAKTNDVRdVIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFL-------PHVEcgtitLIG 349
Cdd:PRK14964 80 kNSNHPDVIEID--AASNTSVDDIK-VILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLktleepaPHVK-----FIL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 350 ATTENPSFQVNTAllSRCRVIVLEKLPVEAMVTilmrainslgihvldssrptdplsHSSNCSSEPSVFIEDKAVDTLAY 429
Cdd:PRK14964 152 ATTEVKKIPVTII--SRCQRFDLQKIPTDKLVE------------------------HLVDIAKKENIEHDEESLKLIAE 205
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 27229310 430 LSDGDARTGLNGLQLAVLarlssrkmfckksgqtYspSRVLITENDVKE--GLQRSHILYD 488
Cdd:PRK14964 206 NSSGSMRNALFLLEQAAI----------------Y--SNNKISEKSVRDllGCVDKHILED 248
|
|
| ZnF_Rad18 |
smart00734 |
Rad18-like CCHC zinc finger; Yeast Rad18p functions with Rad5p in error-free post-replicative ... |
17-40 |
4.88e-09 |
|
Rad18-like CCHC zinc finger; Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Pssm-ID: 128973 [Multi-domain] Cd Length: 24 Bit Score: 51.84 E-value: 4.88e-09
|
| zf-WRNIP1_ubi |
pfam18279 |
Werner helicase-interacting protein 1 ubiquitin-binding domain; This domain is found in the ... |
16-36 |
6.68e-09 |
|
Werner helicase-interacting protein 1 ubiquitin-binding domain; This domain is found in the Werner helicase-interacting protein 1 present in Homo sapiens. The domain is a zinc finger responsible and has a zinc-coordinating B-B-A fold. WRNIP1 UBZ binds ubiquitin in a similar manner to Rad18 UBZ.
Pssm-ID: 375706 Cd Length: 21 Bit Score: 51.36 E-value: 6.68e-09
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
247-449 |
1.22e-08 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 56.91 E-value: 1.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 247 LRSLLETNEIP-SLILWGPPGCGKTTLAHIIAN------------NSKKHSIR--------FVTLSATNAKT----NDVR 301
Cdd:COG0470 8 LLAAAESGRLPhALLLHGPPGIGKTTLALALARdllcenpeggkaCGQCHSRLmaagnhpdLLELNPEEKSDqigiDQIR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 302 DVIKQAQNeKSFFKRKTILFIDEIHRFNKSQQDTFL-----PHVECgTITLIgatTENPSFQVNTaLLSRCRVIVLEKLP 376
Cdd:COG0470 88 ELGEFLSL-TPLEGGRKVVIIDEADAMNEAAANALLktleePPKNT-PFILI---ANDPSRLLPT-IRSRCQVIRFRPPS 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 27229310 377 VEAMVTILMRAinslgihvldssrptdplshssncssepsvFIEDKAVDTLAYLSDGDARTGLNGLQLAVLAR 449
Cdd:COG0470 162 EEEALAWLREE------------------------------GVDEDALEAILRLAGGDPRAAINLLQALAGRK 204
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
223-397 |
6.26e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 55.55 E-value: 6.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 223 ADKMRPDTLQDYIGQSRAVgqETLLRSLlETNEI-PSLILWGPPGCGKTTLAHIIAN--NSKK----------------- 282
Cdd:PRK06647 7 ATKRRPRDFNSLEGQDFVV--ETLKHSI-ESNKIaNAYIFSGPRGVGKTSSARAFARclNCVNgptpmpcgecsscksid 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 283 --HSIRFVTLS-ATNAKTNDVRdvikQAQNEKSF---FKRKTILFIDEIHRFNKSQQDTFLPHVE--CGTITLIGATTEn 354
Cdd:PRK06647 84 ndNSLDVIEIDgASNTSVQDVR----QIKEEIMFppaSSRYRVYIIDEVHMLSNSAFNALLKTIEepPPYIVFIFATTE- 158
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 27229310 355 pSFQVNTALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLD 397
Cdd:PRK06647 159 -VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYED 200
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
223-381 |
6.79e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 55.55 E-value: 6.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 223 ADKMRPDTLQDYIGQSRAVgqeTLLRSLLETNEIPSLILW-GPPGCGKTTLAHIIANN---------------------- 279
Cdd:PRK14971 8 ARKYRPSTFESVVGQEALT---TTLKNAIATNKLAHAYLFcGPRGVGKTTCARIFAKTincqnltadgeacnecescvaf 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 280 SKKHSIRFVTL-SATNAKTNDVRDVIKQAQNEKSFFKRKtILFIDEIHRFNKSQQDTFL------PHvecgTITLIGATT 352
Cdd:PRK14971 85 NEQRSYNIHELdAASNNSVDDIRNLIEQVRIPPQIGKYK-IYIIDEVHMLSQAAFNAFLktleepPS----YAIFILATT 159
|
170 180
....*....|....*....|....*....
gi 27229310 353 ENpsFQVNTALLSRCRVIVLEKLPVEAMV 381
Cdd:PRK14971 160 EK--HKILPTILSRCQIFDFNRIQVADIV 186
|
|
| rad24 |
TIGR00602 |
checkpoint protein rad24; All proteins in this family for which functions are known are ... |
218-464 |
8.40e-08 |
|
checkpoint protein rad24; All proteins in this family for which functions are known are involved in DNA damage tolerance (likely cell cycle checkpoints).This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129690 [Multi-domain] Cd Length: 637 Bit Score: 55.35 E-value: 8.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 218 EGKPLADKMRPDTLQDYIGQSRAVG--QETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIA--------NNSKKHSIRF 287
Cdd:TIGR00602 70 GNEPWVEKYKPETQHELAVHKKKIEevETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSkelgiqvqEWSNPTLPDF 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 288 ------VTLSATNAKTNDV------RDVIKQAQNE-----KSFFKRKTILFIDEI----HRFNKSQQDTF-LPHVECGTI 345
Cdd:TIGR00602 150 qkndhkVTLSLESCFSNFQsqievfSEFLLRATNKlqmlgDDLMTDKKIILVEDLpnqfYRDTRALHEILrWKYVSIGRC 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 346 TLIGATTEN------------PSFQV-NTALLSRCRVIVLEKLPVEAmvTILMRAINSLgihvldssrptdpLSHSSNCS 412
Cdd:TIGR00602 230 PLVFIITESlegdnnqrrllfPAETImNKEILEEPRVSNISFNPIAP--TIMKKFLNRI-------------VTIEAKKN 294
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 27229310 413 SEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLAVlARLSSRKMFCKKSGQTY 464
Cdd:TIGR00602 295 GEKIKVPKKTSVELLCQGCSGDIRSAINSLQFSS-SKSGSLPIKKRMSTKSD 345
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
257-369 |
2.11e-07 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 50.74 E-value: 2.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 257 PSLILWGPPGCGKTTLAHIIANNSKKHSIRfVTLSATNAKTND-----VRDVIKQAQNeksffKRKTILFIDEIH----- 326
Cdd:cd19481 27 KGILLYGPPGTGKTLLAKALAGELGLPLIV-VKLSSLLSKYVGeseknLRKIFERARR-----LAPCILFIDEIDaigrk 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 27229310 327 RFNKSQQDTFLPHV-----------ECGTITLIGATteNPSFQVNTALLSRCRV 369
Cdd:cd19481 101 RDSSGESGELRRVLnqllteldgvnSRSKVLVIAAT--NRPDLLDPALLRPGRF 152
|
|
| COG1373 |
COG1373 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
247-330 |
2.67e-07 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440984 [Multi-domain] Cd Length: 405 Bit Score: 53.41 E-value: 2.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 247 LRSLLETNEIpsLILWGPPGCGKTTLA-HIIANNSKKHSIRFVTLSATNAKTNDVRDVIKQAqneKSFFKRKTILFIDEI 325
Cdd:COG1373 13 LLKLLDNRKA--VVITGPRQVGKTTLLkQLAKELENILYINLDDPRLRALAEEDPDDLLEAL---KELYPGKTYLFLDEI 87
|
....*
gi 27229310 326 HRFNK 330
Cdd:COG1373 88 QRVPE 92
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
259-395 |
6.14e-07 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 51.04 E-value: 6.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 259 LILWGPPGCGKTTLAHIIANNSKKHSI---------RFVTLSATNaktndVRDVIKQAQNeksffkRKTILFIDEIH--- 326
Cdd:COG1223 38 ILFYGPPGTGKTMLAEALAGELKLPLLtvrldsligSYLGETARN-----LRKLFDFARR------APCVIFFDEFDaia 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 327 --RFNKS-------------QQDTFLPhvecGTITLIGATteNPSFQVNTALLSRCRVIVLEKLP-VEAMVTILMRAINS 390
Cdd:COG1223 107 kdRGDQNdvgevkrvvnallQELDGLP----SGSVVIAAT--NHPELLDSALWRRFDEVIEFPLPdKEERKEILELNLKK 180
|
....*
gi 27229310 391 LGIHV 395
Cdd:COG1223 181 FPLPF 185
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
225-443 |
8.14e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 52.12 E-value: 8.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 225 KMRPDTLQDYIGQSRAVgqeTLLRSLLETNEIPSLILW-GPPGCGKTTLAHIIA------NNSKK--------------- 282
Cdd:PRK14950 9 KWRSQTFAELVGQEHVV---QTLRNAIAEGRVAHAYLFtGPRGVGKTSTARILAkavnctTNDPKgrpcgtcemcraiae 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 283 -HSIRFVTL-SATNAKTNDVRDVIKQAQNEKSFFkRKTILFIDEIHRFNKSQQDTFL-------PHVecgtiTLIGATTE 353
Cdd:PRK14950 86 gSAVDVIEMdAASHTSVDDAREIIERVQFRPALA-RYKVYIIDEVHMLSTAAFNALLktleeppPHA-----IFILATTE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 354 npSFQVNTALLSRCRVIVLEKLPVEAMVtilmrainslgihvldssrptdplSHSSNCSSEPSVFIEDKAVDTLAYLSDG 433
Cdd:PRK14950 160 --VHKVPATILSRCQRFDFHRHSVADMA------------------------AHLRKIAAAEGINLEPGALEAIARAATG 213
|
250
....*....|
gi 27229310 434 DARTGLNGLQ 443
Cdd:PRK14950 214 SMRDAENLLQ 223
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
222-395 |
1.09e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 51.69 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 222 LADKMRPDTLQDYIGQSRAvgqETLLRSLLETNEIP-SLILWGPPGCGKTTLAHIIA---NNSKKHSIR----------- 286
Cdd:PRK14962 4 LYRKYRPKTFSEVVGQDHV---KKLIINALKKNSIShAYIFAGPRGTGKTTVARILAkslNCENRKGVEpcnecracrsi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 287 ----FVTL----SATNAKTNDVRDvIKQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVE--CGTITLIGATTeNPS 356
Cdd:PRK14962 81 degtFMDVieldAASNRGIDEIRK-IRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEepPSHVVFVLATT-NLE 158
|
170 180 190
....*....|....*....|....*....|....*....
gi 27229310 357 fQVNTALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHV 395
Cdd:PRK14962 159 -KVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI 196
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
222-496 |
1.95e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 50.58 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 222 LADKMRPDTLQDYIGQSRAVgqETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIANN---------------------S 280
Cdd:PRK14961 6 LARKWRPQYFRDIIGQKHIV--TAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSlncqngitsnpcrkciickeiE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 281 KKHSIRFVTL-SATNAKTNDVRDVIKQAQNE--KSFFKrktILFIDEIHRFNKSQQDTFLPHVE--CGTITLIGATTENP 355
Cdd:PRK14961 84 KGLCLDLIEIdAASRTKVEEMREILDNIYYSpsKSRFK---VYLIDEVHMLSRHSFNALLKTLEepPQHIKFILATTDVE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 356 sfQVNTALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVldssrptdplshssncssepsvfiEDKAVDTLAYLSDGDA 435
Cdd:PRK14961 161 --KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT------------------------DEYALKLIAYHAHGSM 214
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 27229310 436 RTGLNGLQLAVlaRLS----SRKMFCKKSGQTYSPSRVLITENDVKEGLQRSHILYDRAGEEHYN 496
Cdd:PRK14961 215 RDALNLLEHAI--NLGkgniNIKNVTDMLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIE 277
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
259-336 |
2.66e-06 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 49.80 E-value: 2.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 259 LILWGPPGCGKTTLAHIIANNSKKH--SIRFVTLSA---TNAKTNDVRDviKQAQNEKSFFKRKTILFIDEIHRF--NKS 331
Cdd:COG0593 37 LFLYGGVGLGKTHLLHAIGNEALENnpGARVVYLTAeefTNDFINAIRN--NTIEEFKEKYRSVDVLLIDDIQFLagKEA 114
|
....*
gi 27229310 332 QQDTF 336
Cdd:COG0593 115 TQEEF 119
|
|
| RecA-like_NVL_r1-like |
cd19518 |
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
259-325 |
3.50e-06 |
|
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410926 [Multi-domain] Cd Length: 169 Bit Score: 47.78 E-value: 3.50e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 27229310 259 LILWGPPGCGKTTLAHIIANNSKkhsIRFVTLSATN-------AKTNDVRDVIKQAQNEKSffkrkTILFIDEI 325
Cdd:cd19518 37 VLLHGPPGCGKTMLANAIAGELK---VPFLKISATEivsgvsgESEEKIRELFDQAISNAP-----CIVFIDEI 102
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
222-380 |
4.04e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 49.94 E-value: 4.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 222 LADKMRPDTLQDYIGQSRAVGQetlLRSLLETNEIP-SLILWGPPGCGKTTLAHIIA---------NNSKKHSIRfVTLS 291
Cdd:PRK14956 8 LSRKYRPQFFRDVIHQDLAIGA---LQNALKSGKIGhAYIFFGPRGVGKTTIARILAkrlncenpiGNEPCNECT-SCLE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 292 ATNAKTNDVRDV----------IKQAQNEKSFFK---RKTILFIDEIHRFNKSQQDTFLPHVE--CGTITLIGATTEnpS 356
Cdd:PRK14956 84 ITKGISSDVLEIdaasnrgienIRELRDNVKFAPmggKYKVYIIDEVHMLTDQSFNALLKTLEepPAHIVFILATTE--F 161
|
170 180
....*....|....*....|....
gi 27229310 357 FQVNTALLSRCRVIVLEKLPVEAM 380
Cdd:PRK14956 162 HKIPETILSRCQDFIFKKVPLSVL 185
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
236-376 |
1.01e-05 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 46.05 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 236 GQSRAVgqeTLLRSLLETNEIPSLILW-GPPGCGKTTLAHIIA-----------------NNSKK-----HS-IRFVTLS 291
Cdd:pfam13177 1 GQPEAI---QLLQNSLENGRLSHAYLFsGPEGVGKLELALAFAkalfceepgddlpcgqcRSCRRiesgnHPdLVIIEPE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 292 ATNAKTNDVRDVIKQAQnEKSFFKRKTILFIDEIHRFNKSQQDTFL-----PHVEcgtiTLIGATTENPSfQVNTALLSR 366
Cdd:pfam13177 78 GQSIKIDQIRELQKEFS-KSPYEGKKKVYIIEDAEKMTASAANSLLkfleePPGN----TVIILLTENPS-RLLPTIRSR 151
|
170
....*....|
gi 27229310 367 CRVIVLEKLP 376
Cdd:pfam13177 152 CQIIRFKPLS 161
|
|
| Rad17 |
pfam03215 |
Rad17 P-loop domain; |
218-376 |
1.13e-05 |
|
Rad17 P-loop domain;
Pssm-ID: 367398 [Multi-domain] Cd Length: 186 Bit Score: 46.49 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 218 EGKPLADKMRPDTLQDYIGQSRAVG--QETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIannSKKHSIRFVT-LSATN 294
Cdd:pfam03215 5 GGEQWYEKYKPNCLEQLAVHKRKIKdvQEWLDAMFLENAKHRILLISGPSGCGKSTVIKEL---SKELGPKYREwSNPTS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 295 AKTNDvrdvikqaqNEKSFFKRKTILFideihrfnksqqDTFLPHVECGTITLIGATTENPSFQVNTALLSRCRVIVLEK 374
Cdd:pfam03215 82 FRSPP---------NQVTDFRGDCIVN------------SRFLSQMESFSEFELKGARYLVMQKRGKNAQGNKKLILIED 140
|
..
gi 27229310 375 LP 376
Cdd:pfam03215 141 LP 142
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
220-278 |
2.31e-05 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 47.53 E-value: 2.31e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 27229310 220 KPLADKMRPDTLQDYIGQSRAVGQetlLRSLLETNEIPSLILWGPPGCGK--TTLAHIIAN 278
Cdd:PRK04132 7 KPWVEKYRPQRLDDIVGQEHIVKR---LKHYVKTGSMPHLLFAGPPGVGKclTGDTKVIAN 64
|
|
| PRK03992 |
PRK03992 |
proteasome-activating nucleotidase; Provisional |
221-325 |
2.55e-05 |
|
proteasome-activating nucleotidase; Provisional
Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 47.13 E-value: 2.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 221 PLADKM----RPDTLQDYIGqsravGQETLLRSLLETNEIP----------------SLILWGPPGCGKTTLAHIIANNS 280
Cdd:PRK03992 115 PRVQAMevieSPNVTYEDIG-----GLEEQIREVREAVELPlkkpelfeevgieppkGVLLYGPPGTGKTLLAKAVAHET 189
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 27229310 281 KKHSIRFVTLSATN------AKTndVRDVIKQAQnEKSffkrKTILFIDEI 325
Cdd:PRK03992 190 NATFIRVVGSELVQkfigegARL--VRELFELAR-EKA----PSIIFIDEI 233
|
|
| AAA_14 |
pfam13173 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
259-327 |
2.98e-05 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 463799 [Multi-domain] Cd Length: 128 Bit Score: 44.12 E-value: 2.98e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 27229310 259 LILWGPPGCGKTTLA-HIIANNSKKHSIRFVTL---SATNAKTNDVRDVIkqaqnEKSFFKRKTILFIDEIHR 327
Cdd:pfam13173 5 LVITGPRQVGKTTLLlQLIKELLPPENILYINLddpRLLKLADFELLELF-----LELLYPGKTYLFLDEIQR 72
|
|
| ftsH |
CHL00176 |
cell division protein; Validated |
248-325 |
3.30e-05 |
|
cell division protein; Validated
Pssm-ID: 214386 [Multi-domain] Cd Length: 638 Bit Score: 46.97 E-value: 3.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 248 RSLLETNEIPS-LILWGPPGCGKTTLAHIIANNSKK--HSI-------RFVTLSATNaktndVRDVIKQAQNeksffKRK 317
Cdd:CHL00176 207 RFTAVGAKIPKgVLLVGPPGTGKTLLAKAIAGEAEVpfFSIsgsefveMFVGVGAAR-----VRDLFKKAKE-----NSP 276
|
....*...
gi 27229310 318 TILFIDEI 325
Cdd:CHL00176 277 CIVFIDEI 284
|
|
| RecA-like_CDC48_r2-like |
cd19511 |
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ... |
260-325 |
4.01e-05 |
|
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410919 [Multi-domain] Cd Length: 159 Bit Score: 44.20 E-value: 4.01e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 27229310 260 ILWGPPGCGKTTLAHIIANNSKkhsIRFVTLSATNAKT-------NDVRDVIKQAQNEKSffkrkTILFIDEI 325
Cdd:cd19511 31 LLYGPPGCGKTLLAKALASEAG---LNFISVKGPELFSkyvgeseRAVREIFQKARQAAP-----CIIFFDEI 95
|
|
| cell_div_CdvC |
NF041006 |
cell division protein CdvC; |
259-325 |
5.68e-05 |
|
cell division protein CdvC;
Pssm-ID: 468935 [Multi-domain] Cd Length: 371 Bit Score: 45.88 E-value: 5.68e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 27229310 259 LILWGPPGCGKTTLAHIIANNSKKHsirFVTLSATN--------AKTNdVRDVIKQAQNEKSFFKRKTILFIDEI 325
Cdd:NF041006 137 ILLYGPPGCGKTMLAAAVANEIDSE---FIHVDAASimskwlgeAEKN-VAKIFKKAREKSKEEGKPAIIFIDEI 207
|
|
| RecA-like_PAN_like |
cd19502 |
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ... |
260-325 |
5.98e-05 |
|
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410910 [Multi-domain] Cd Length: 171 Bit Score: 43.87 E-value: 5.98e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 260 ILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND----VRDVIKQAQNeksffKRKTILFIDEI 325
Cdd:cd19502 41 LLYGPPGTGKTLLAKAVANHTDATFIRVVGSELVQKYIGEgarlVRELFEMARE-----KAPSIIFIDEI 105
|
|
| RecA-like_ATAD1 |
cd19520 |
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ... |
259-335 |
6.03e-05 |
|
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase) is an ATPase that plays a critical role in regulating the surface expression of alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors, thereby regulating synaptic plasticity, learning and memory. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410928 [Multi-domain] Cd Length: 166 Bit Score: 43.95 E-value: 6.03e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 27229310 259 LILWGPPGCGKTTLAHIIAnnsKKHSIRFVTLSATNAKTNDVRDVIKQAQNEKSFFKR--KTILFIDEIHRFNKSQQDT 335
Cdd:cd19520 38 VLLYGPPGCGKTMLAKATA---KEAGARFINLQVSSLTDKWYGESQKLVAAVFSLASKlqPSIIFIDEIDSFLRQRSST 113
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
259-325 |
6.52e-05 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 43.82 E-value: 6.52e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 27229310 259 LILWGPPGCGKTTLAHIIANNSKkhsIRFVTLSA----------TNAKtndVRDVIKQAQNEKsffkrKTILFIDEI 325
Cdd:cd19503 37 VLLHGPPGTGKTLLARAVANEAG---ANFLSISGpsivskylgeSEKN---LREIFEEARSHA-----PSIIFIDEI 102
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
261-488 |
8.07e-05 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 45.60 E-value: 8.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 261 LWGPPGCGKTTL----AHIIANNSKKhsIRFVtlsATNAKTNDVRDVIK--QAQNEKSFFKRKTILFIDEIHRFNK---S 331
Cdd:PRK12422 146 LFGPEGSGKTHLmqaaVHALRESGGK--ILYV---RSELFTEHLVSAIRsgEMQRFRQFYRNVDALFIEDIEVFSGkgaT 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 332 QQDTFLP----HVECGTITLIGATTENPSFQVNTALLSRCR---VIVLEKLPVEAMVTILMRAINSLGIHvldssrptdp 404
Cdd:PRK12422 221 QEEFFHTfnslHTEGKLIVISSTCAPQDLKAMEERLISRFEwgiAIPLHPLTKEGLRSFLERKAEALSIR---------- 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 405 lshssncssepsvfIEDKAVDTLAYLSDGDARTGLNGLQLavlarLSSRKMFCKKSGQtyspsrvLITENDVKeglqrsH 484
Cdd:PRK12422 291 --------------IEETALDFLIEALSSNVKSLLHALTL-----LAKRVAYKKLSHQ-------LLYVDDIK------A 338
|
....
gi 27229310 485 ILYD 488
Cdd:PRK12422 339 LLHD 342
|
|
| RecA-like_CDC48_r2-like |
cd19528 |
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or ... |
259-332 |
1.28e-04 |
|
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP in metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the second of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r2-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410936 [Multi-domain] Cd Length: 161 Bit Score: 42.88 E-value: 1.28e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 27229310 259 LILWGPPGCGKTTLAHIIANNSKKHSI-----RFVTLSATNAKTNdVRDVIKQAQNEKSffkrkTILFIDEIHRFNKSQ 332
Cdd:cd19528 30 VLFYGPPGCGKTLLAKAIANECQANFIsvkgpELLTMWFGESEAN-VRDIFDKARAAAP-----CVLFFDELDSIAKAR 102
|
|
| RecA-like_PEX1_r2 |
cd19526 |
second of two ATPase domains of Peroxisomal biogenesis factor 1 (PEX1); PEX1(also known as ... |
259-324 |
1.34e-04 |
|
second of two ATPase domains of Peroxisomal biogenesis factor 1 (PEX1); PEX1(also known as Peroxin-1)/PEX6 is a protein unfoldase; PEX1 and PEX6 form a heterohexameric Type-2 AAA-ATPase complex and are essential for peroxisome biogenesis as they are required for the import of folded proteins into the peroxisomal matrix. PEX-1 is required for stability of PEX5. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410934 [Multi-domain] Cd Length: 158 Bit Score: 42.80 E-value: 1.34e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 27229310 259 LILWGPPGCGKTTLAHIIANNSkkhSIRFVTLSA-------TNAKTNDVRDVIKQAQNEKSffkrkTILFIDE 324
Cdd:cd19526 30 ILLYGPPGCGKTLLASAIASEC---GLNFISVKGpellnkyIGASEQNVRDLFSRAQSAKP-----CILFFDE 94
|
|
| RecA-like_FtsH |
cd19501 |
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ... |
255-325 |
1.35e-04 |
|
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410909 [Multi-domain] Cd Length: 171 Bit Score: 42.99 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 255 EIP-SLILWGPPGCGKTTLAHIIANNSKkhsIRFVTLSATN---------AKTndVRDVIKQAqneksffKRKT--ILFI 322
Cdd:cd19501 35 KIPkGVLLVGPPGTGKTLLAKAVAGEAG---VPFFSISGSDfvemfvgvgASR--VRDLFEQA-------KKNApcIVFI 102
|
...
gi 27229310 323 DEI 325
Cdd:cd19501 103 DEI 105
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
222-330 |
1.51e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 44.64 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 222 LADKMRPDTLQDYIGQSrAVGQEtlLRSLLETNEIPSLILW-GPPGCGKTTLAHII-----------------------A 277
Cdd:PRK08451 4 LALKYRPKHFDELIGQE-SVSKT--LSLALDNNRLAHAYLFsGLRGSGKTSSARIFaralvceqgpsstpcdtciqcqsA 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 27229310 278 NNSkkHSIRFVTL-SATNAKTNDVRDVIKQAQNEKSFFKRKtILFIDEIHRFNK 330
Cdd:PRK08451 81 LEN--RHIDIIEMdAASNRGIDDIRELIEQTKYKPSMARFK-IFIIDEVHMLTK 131
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
258-338 |
1.80e-04 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 41.89 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 258 SLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSAtNAKTNDVRDVIKQAQNEKSF--------FKRKTILFIDEIHRFN 329
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLTR-DTTEEDLFGRRNIDPGGASWvdgplvraAREGEIAVLDEINRAN 79
|
....*....
gi 27229310 330 KSQQDTFLP 338
Cdd:pfam07728 80 PDVLNSLLS 88
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
222-446 |
2.53e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 43.95 E-value: 2.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 222 LADKMRPDTLQDYIGQSRAVgqETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIA------------------NNSKKH 283
Cdd:PRK14958 6 LARKWRPRCFQEVIGQAPVV--RALSNALDQQYLHHAYLFTGTRGVGKTTISRILAkclncekgvsanpcndceNCREID 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 284 SIRFVTL----SATNAKTNDVRDVIKQAQNEKSFFKRKTILfIDEIHRFNKSQQDTFLPHVE--CGTITLIGATTENPSF 357
Cdd:PRK14958 84 EGRFPDLfevdAASRTKVEDTRELLDNIPYAPTKGRFKVYL-IDEVHMLSGHSFNALLKTLEepPSHVKFILATTDHHKL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 358 QVntALLSRCRVIVLEKLPveamvtilmrainslgihvldssrPTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDART 437
Cdd:PRK14958 163 PV--TVLSRCLQFHLAQLP------------------------PLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRD 216
|
....*....
gi 27229310 438 GLNGLQLAV 446
Cdd:PRK14958 217 ALSLLDQSI 225
|
|
| RecA-like_VPS4-like |
cd19509 |
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This ... |
258-366 |
2.83e-04 |
|
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410917 [Multi-domain] Cd Length: 163 Bit Score: 41.95 E-value: 2.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 258 SLILWGPPGCGKTTLAHIIANNSkkhSIRFVTLSATN-------AKTNDVRDVIKQAQneksfFKRKTILFIDEIHRFNK 330
Cdd:cd19509 34 GILLYGPPGTGKTLLARAVASES---GSTFFSISASSlvskwvgESEKIVRALFALAR-----ELQPSIIFIDEIDSLLS 105
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 27229310 331 SQQDT-----------FL------PHVECGTITLIGATteNPSFQVNTALLSR 366
Cdd:cd19509 106 ERGSGeheasrrvkteFLvqmdgvLNKPEDRVLVLGAT--NRPWELDEAFLRR 156
|
|
| RAD18 |
COG5432 |
RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]; |
18-83 |
3.79e-04 |
|
RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms];
Pssm-ID: 227719 [Multi-domain] Cd Length: 391 Bit Score: 43.15 E-value: 3.79e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 27229310 18 VQCPVCQQMMPAAHINSHLDRCLLLH--PAGHAEP---AAGPH-RAGERAKGPSPPGAKRRRLSESSALKQP 83
Cdd:COG5432 161 VHCPACSNLVPHNQINQHLDSCLNSPssPSSSSSPyknKDNSKsNSLLSFKTDDDSITKRRLRSFNSADELP 232
|
|
| PTZ00454 |
PTZ00454 |
26S protease regulatory subunit 6B-like protein; Provisional |
259-325 |
3.97e-04 |
|
26S protease regulatory subunit 6B-like protein; Provisional
Pssm-ID: 240423 [Multi-domain] Cd Length: 398 Bit Score: 43.21 E-value: 3.97e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 27229310 259 LILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND----VRDVIKQAQnEKSffkrKTILFIDEI 325
Cdd:PTZ00454 182 VLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEgprmVRDVFRLAR-ENA----PSIIFIDEV 247
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
232-386 |
5.82e-04 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 42.46 E-value: 5.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 232 QDYIGQSRAVgqETLLRSLLetNEIPsLILWGPPGCGKTTLAHIIANNSKKHSIR--FvtlsatnakTNDVR--DV---- 303
Cdd:COG0714 12 KVYVGQEELI--ELVLIALL--AGGH-LLLEGVPGVGKTTLAKALARALGLPFIRiqF---------TPDLLpsDIlgty 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 304 IKQAQNEKSFFKR----KTILFIDEIhrfNKSQQDT--FLPHV-ECGTITLIGAT-----------TENPSFQVNT---- 361
Cdd:COG0714 78 IYDQQTGEFEFRPgplfANVLLADEI---NRAPPKTqsALLEAmEERQVTIPGGTyklpepflviaTQNPIEQEGTyplp 154
|
170 180
....*....|....*....|....*..
gi 27229310 362 -ALLSRCRV-IVLEKLPVEAMVTILMR 386
Cdd:COG0714 155 eAQLDRFLLkLYIGYPDAEEEREILRR 181
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
259-333 |
6.20e-04 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 41.54 E-value: 6.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 259 LILWGPPGCGKTTLAHIIANN--SKKHSIRFVTLSATNAkTNDVRDVIKqaQNEKSFFKRK----TILFIDEIHRFNKSQ 332
Cdd:pfam00308 37 LFIYGGVGLGKTHLLHAIGNYalQNAPNLRVVYLTAEEF-LNDFVDAIR--DNKTNQFKEKyrnvDVLLIDDIQFLAGKE 113
|
.
gi 27229310 333 Q 333
Cdd:pfam00308 114 G 114
|
|
| hflB |
PRK10733 |
ATP-dependent zinc metalloprotease FtsH; |
255-325 |
6.35e-04 |
|
ATP-dependent zinc metalloprotease FtsH;
Pssm-ID: 182683 [Multi-domain] Cd Length: 644 Bit Score: 43.10 E-value: 6.35e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 27229310 255 EIPSLILW-GPPGCGKTTLAHIIANNSKkhsIRFVTLSATN-------AKTNDVRDVIKQAQNEKSffkrkTILFIDEI 325
Cdd:PRK10733 183 KIPKGVLMvGPPGTGKTLLAKAIAGEAK---VPFFTISGSDfvemfvgVGASRVRDMFEQAKKAAP-----CIIFIDEI 253
|
|
| clpC |
CHL00095 |
Clp protease ATP binding subunit |
260-384 |
8.45e-04 |
|
Clp protease ATP binding subunit
Pssm-ID: 214361 [Multi-domain] Cd Length: 821 Bit Score: 42.74 E-value: 8.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 260 ILWGPPGCGKTT----LAHIIANNSKK---HSIRFVTLSATN--AKTND-------VRDVIKQAQNEKsffkrKTILFID 323
Cdd:CHL00095 204 ILIGEPGVGKTAiaegLAQRIVNRDVPdilEDKLVITLDIGLllAGTKYrgefeerLKRIFDEIQENN-----NIILVID 278
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 27229310 324 EIHR-FNKSQQDT-------FLPHVECGTITLIGATTEN---PSFQVNTALLSRCRVIVLEKLPVEAMVTIL 384
Cdd:CHL00095 279 EVHTlIGAGAAEGaidaaniLKPALARGELQCIGATTLDeyrKHIEKDPALERRFQPVYVGEPSVEETIEIL 350
|
|
| RecA-like_NVL_r2-like |
cd19530 |
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
259-285 |
1.03e-03 |
|
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410938 [Multi-domain] Cd Length: 161 Bit Score: 40.16 E-value: 1.03e-03
10 20
....*....|....*....|....*..
gi 27229310 259 LILWGPPGCGKTTLAHIIANNSKKHSI 285
Cdd:cd19530 33 VLLYGPPGCGKTLLAKAVANESGANFI 59
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
222-386 |
1.32e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 41.81 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 222 LADKMRPDTLQDYIGQsravgqETLLRSL---LETNEIP-SLILWGPPGCGKTTLAHIIA---NN-----SKKHSIRFVT 289
Cdd:PRK09111 14 LARKYRPQTFDDLIGQ------EAMVRTLtnaFETGRIAqAFMLTGVRGVGKTTTARILAralNYegpdgDGGPTIDLCG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 290 L-------------------SATNAKTNDVRDVIKQAQneksfFK----RKTILFIDEIHRFNKSQQDTFL-------PH 339
Cdd:PRK09111 88 VgehcqaimegrhvdvlemdAASHTGVDDIREIIESVR-----YRpvsaRYKVYIIDEVHMLSTAAFNALLktleeppPH 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 27229310 340 VecgtiTLIGATTEnpSFQVNTALLSRCRVIVLEKLPVEAMVTILMR 386
Cdd:PRK09111 163 V-----KFIFATTE--IRKVPVTVLSRCQRFDLRRIEADVLAAHLSR 202
|
|
| AAA_7 |
pfam12775 |
P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 ... |
246-326 |
1.97e-03 |
|
P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the third nucleotide binding sites in the dynein motor. However, AAA3 has lost the catalytic residues necessary for ATP hydrolysis (the Walker B glutamate, the arginine finger, sensor-I and sensor-II motifs).
Pssm-ID: 463698 [Multi-domain] Cd Length: 179 Bit Score: 39.68 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 246 LLRSLLeTNEIPSLiLWGPPGCGKTTlahIIAN-----NSKKHSIRFVTLSA-TNAktNDVRDVIkqaqnEKSFFKR--- 316
Cdd:pfam12775 23 LLDLLL-KNGKPVL-LVGPTGTGKTV---IIQNllrklDKEKYLPLFINFSAqTTS--NQTQDII-----ESKLEKRrkg 90
|
90
....*....|....*...
gi 27229310 317 --------KTILFIDEIH 326
Cdd:pfam12775 91 vygppggkKLVVFIDDLN 108
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
258-328 |
2.13e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 38.86 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 258 SLILWGPPGCGKTTLAHIIANNSKKHSIR--FVTLSATNAKTNDVRDVIKQAQNEKSFFKRKTILF-------------- 321
Cdd:pfam13401 7 ILVLTGESGTGKTTLLRRLLEQLPEVRDSvvFVDLPSGTSPKDLLRALLRALGLPLSGRLSKEELLaalqqlllalavav 86
|
90
....*....|
gi 27229310 322 ---IDEIHRF 328
Cdd:pfam13401 87 vliIDEAQHL 96
|
|
| DEXXQc_SF1 |
cd18043 |
DEXXQ-box helicase domain of Superfamily 1 helicases; Superfamily 1 (SF1) helicases are ... |
243-279 |
2.19e-03 |
|
DEXXQ-box helicase domain of Superfamily 1 helicases; Superfamily 1 (SF1) helicases are nucleic acid motor proteins that couple ATP hydrolysis to translocation along with the concomitant unwinding of DNA or RNA. This is central to many aspects of cellular DNA and RNA metabolism and accordingly, they are implicated in a wide range of nucleic acid processing events including DNA replication, recombination, and repair as well as many aspects of RNA metabolism. Superfamily 1 helicases are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350801 [Multi-domain] Cd Length: 127 Bit Score: 38.72 E-value: 2.19e-03
10 20 30
....*....|....*....|....*....|....*...
gi 27229310 243 QETLLRSLLETneiPSLILWGPPGCGKT-TLAHIIANN 279
Cdd:cd18043 4 QEAAIISARNG---KNVVIQGPPGTGKSqTIANIIANA 38
|
|
| McrB |
COG1401 |
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ... |
228-327 |
2.31e-03 |
|
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];
Pssm-ID: 441011 [Multi-domain] Cd Length: 477 Bit Score: 40.91 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 228 PDTLQDYIGQSRAVGQETLLRSLLETneiPSLILWGPPGCGKTTLAHIIAN---NSKKHSIRFVT-----------LSAT 293
Cdd:COG1401 196 DDYLKDLLREKFEETLEAFLAALKTK---KNVILAGPPGTGKTYLARRLAEalgGEDNGRIEFVQfhpswsyedflLGYR 272
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 27229310 294 NAKTND--------VRDVIKQAQNEKsffKRKTILFIDEIHR 327
Cdd:COG1401 273 PSLDEGkyeptpgiFLRFCLKAEKNP---DKPYVLIIDEINR 311
|
|
| ATP-synt_ab |
pfam00006 |
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ... |
263-322 |
2.48e-03 |
|
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Pssm-ID: 425417 [Multi-domain] Cd Length: 212 Bit Score: 39.65 E-value: 2.48e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 263 GPPGCGKTTLAHIIANNSKKHSIRFVtlsATNAKTNDVRDVIKQAQNEKSFfkRKTILFI 322
Cdd:pfam00006 21 GGSGVGKTVLAGMIARQASADVVVYA---LIGERGREVREFIEELLGSGAL--KRTVVVV 75
|
|
| RNA_helicase |
pfam00910 |
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ... |
259-278 |
3.38e-03 |
|
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Pssm-ID: 459992 Cd Length: 102 Bit Score: 37.58 E-value: 3.38e-03
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
200-396 |
3.55e-03 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 40.35 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 200 AGRAHPRALPAEEIRQMLegkpladkmrpDTLQDYIGQSRAVGQETLLRSLLETNEIpsLILWGPPGCGKTTLAHIIANN 279
Cdd:COG0507 97 LRRLARPALDEADVEAAL-----------AALEPRAGITLSDEQREAVALALTTRRV--SVLTGGAGTGKTTTLRALLAA 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 280 SKKHSIRFVTLSATNaktndvrdviKQAQN--EKSFFKRKTilfideIHRfnksqqdtflphvecgtitLIGATTENPSF 357
Cdd:COG0507 164 LEALGLRVALAAPTG----------KAAKRlsESTGIEART------IHR-------------------LLGLRPDSGRF 208
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 27229310 358 QVNT-ALLSRCRVIVLEklpvEA-MVTI-----LMRAINSLGIHVL 396
Cdd:COG0507 209 RHNRdNPLTPADLLVVD----EAsMVDTrlmaaLLEALPRAGARLI 250
|
|
| PTZ00361 |
PTZ00361 |
26 proteosome regulatory subunit 4-like protein; Provisional |
259-325 |
3.78e-03 |
|
26 proteosome regulatory subunit 4-like protein; Provisional
Pssm-ID: 185575 [Multi-domain] Cd Length: 438 Bit Score: 40.14 E-value: 3.78e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 27229310 259 LILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSATNAKTND----VRDVIKQAQNEKSffkrkTILFIDEI 325
Cdd:PTZ00361 220 VILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDgpklVRELFRVAEENAP-----SIVFIDEI 285
|
|
| T7SS_EccA |
TIGR03922 |
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the ... |
187-278 |
4.93e-03 |
|
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 188437 [Multi-domain] Cd Length: 557 Bit Score: 39.83 E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 187 WDADAADASFGVSAGRAHPRAlpaeeIRQMLEGKPLADKMrpdtlqdyIGQSRAVGQETLLRSLLETNEIPS-------- 258
Cdd:TIGR03922 244 WDPSSAPSRAEFVDPAAAERK-----AKLLAEAEAELAEQ--------IGLERVKRQVAALKSSTAMALARAerglpvaq 310
|
90 100
....*....|....*....|....
gi 27229310 259 ----LILWGPPGCGKTTLAHIIAN 278
Cdd:TIGR03922 311 tsnhMLFAGPPGTGKTTIARVVAK 334
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
230-325 |
6.05e-03 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 38.97 E-value: 6.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 230 TLQDY-IGQSRAVGQETL--LRSLLETNEIPSLILWGPPGCGKTTLAHIIANNSKKH--SIRFVTlsatnakTNDVRDVI 304
Cdd:pfam01695 63 TLEDFdFTFAPGLDQRIVaeLASLSFIDRAQNVVLLGPPGVGKTHLAIALGVEACRAgySVRFTS-------AADLVNQL 135
|
90 100
....*....|....*....|....*..
gi 27229310 305 KQAQNEKSF------FKRKTILFIDEI 325
Cdd:pfam01695 136 KRAHGDGKLtrklqqLLKPDVLILDEW 162
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
228-333 |
6.11e-03 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 38.80 E-value: 6.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 228 PDTLQDYIGQSRAvgqETL--LRSLLETNEI-PSLILWGPPGCGKTTLAHIIANNSKKHSIRFVTLSAtnaktndvrdvi 304
Cdd:PRK08903 14 PPTFDNFVAGENA---ELVarLRELAAGPVAdRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA------------ 78
|
90 100
....*....|....*....|....*....
gi 27229310 305 KQAQNEKSFFKRKTILFIDEIHRFNKSQQ 333
Cdd:PRK08903 79 ASPLLAFDFDPEAELYAVDDVERLDDAQQ 107
|
|
| DEXXQc_Upf1-like |
cd17934 |
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, ... |
259-349 |
7.15e-03 |
|
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), coronavirus Nsp13, and similar proteins. They belong to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 438708 [Multi-domain] Cd Length: 121 Bit Score: 36.83 E-value: 7.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 259 LILWGPPGCGKT-TLAHIIANNSKKHSIRFVTLSATnakTNDVRDVIkqaqneksffkrkTILFIDEIhrfnkSQQ---D 334
Cdd:cd17934 2 SLIQGPPGTGKTtTIAAIVLQLLKGLRGKRVLVTAQ---SNVAVDNV-------------DVVIIDEA-----SQItepE 60
|
90
....*....|....*
gi 27229310 335 TFLPHVECGTITLIG 349
Cdd:cd17934 61 LLIALIRAKKVVLVG 75
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
241-289 |
7.42e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 37.87 E-value: 7.42e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 27229310 241 VGQETLLRSLLE------TNEIPSLILWGPPGCGKTTLAHIIANNSKKHSIRFVT 289
Cdd:pfam13191 3 VGREEELEQLLDaldrvrSGRPPSVLLTGEAGTGKTTLLRELLRALERDGGYFLR 57
|
|
| DEXHc_RE |
cd17926 |
DEXH-box helicase domain of DEAD-like helicase restriction enzyme family proteins; This family ... |
243-343 |
7.59e-03 |
|
DEXH-box helicase domain of DEAD-like helicase restriction enzyme family proteins; This family is composed of helicase restriction enzymes and similar proteins such as TFIIH basal transcription factor complex helicase XPB subunit. These proteins are part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350684 [Multi-domain] Cd Length: 146 Bit Score: 37.29 E-value: 7.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 243 QETLLRSLLETNEIPSLILWGPPGCGKT-TLAHIIANNSKKHSI--------------RFVT---------LSATNAKTN 298
Cdd:cd17926 5 QEEALEAWLAHKNNRRGILVLPTGSGKTlTALALIAYLKELRTLivvptdalldqwkeRFEDflgdssiglIGGGKKKDF 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 27229310 299 DVRDVI--------KQAQNEKSFFKRKTILFIDEIHRFNKSQQDTFLPHVECG 343
Cdd:cd17926 85 DDANVVvatyqslsNLAEEEKDLFDQFGLLIVDEAHHLPAKTFSEILKELNAK 137
|
|
| AAA_2 |
pfam07724 |
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ... |
255-346 |
9.84e-03 |
|
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400187 [Multi-domain] Cd Length: 168 Bit Score: 37.56 E-value: 9.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27229310 255 EIPSLILWGPPGCGKTTLAHIIAN---NSKKHSIRFVTLSATNAKTNDvRDVIKQ------AQN----EKSFFKRKTILF 321
Cdd:pfam07724 2 PIGSFLFLGPTGVGKTELAKALAEllfGDERALIRIDMSEYMEEHSVS-RLIGAPpgyvgyEEGgqltEAVRRKPYSIVL 80
|
90 100
....*....|....*....|....*
gi 27229310 322 IDEIHRFNKSQQDTFLPHVECGTIT 346
Cdd:pfam07724 81 IDEIEKAHPGVQNDLLQILEGGTLT 105
|
|
| |
