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Conserved domains on  [gi|237835739|ref|XP_002367167|]
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ribosomal RNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase, putative [Toxoplasma gondii ME49]

Protein Classification

dimethyladenosine transferase( domain architecture ID 10794378)

dimethyladenosine transferase specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 18S rRNA in the 40S particle

CATH:  2.20.25.110
EC:  2.1.1.-
PubMed:  12826405|12504684
SCOP:  3000118

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PTZ00338 PTZ00338
dimethyladenosine transferase-like protein; Provisional
161-451 4.64e-176

dimethyladenosine transferase-like protein; Provisional


:

Pssm-ID: 240367 [Multi-domain]  Cd Length: 294  Bit Score: 496.06  E-value: 4.64e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 161 PLPPTMGLPLQKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAIS 240
Cdd:PTZ00338   1 TGGSKSGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 241 NG-FMNLAVRHGDALRSDLGVFDVCAANLPYQISSHFLLRLLAHRPPFRCAVLMFQKEFGERLMAQPGDKNYCRLAANVS 319
Cdd:PTZ00338  81 SPlASKLEVIEGDALKTEFPYFDVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQKEFALRLLAQPGDELYCRLSVNTQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 320 LFCTVQRVCKVDAKHFTPPPKVDSVVVKVVPRPNLIDVDFKEWDGLMRICFGRKNRTLHALFRRASILSMLEANYKTWCT 399
Cdd:PTZ00338 161 LLCRVTHLMKVSKNSFNPPPKVESSVVRIEPKNPPPDVDFEEWDGLLRICFSRKNKTLSAIFKTKSVLQTLEHNYKSWCT 240
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 237835739 400 -LNKCAPTSQ-PFREFCLGVLSATGLGDRRSVTIDIDTYFSLLLAFNKKGIHFV 451
Cdd:PTZ00338 241 mINKKVPVSLePFKEFIAEILEDSGMFEKRSVKLDIDDFLKLLLAFNKKGIHFV 294
 
Name Accession Description Interval E-value
PTZ00338 PTZ00338
dimethyladenosine transferase-like protein; Provisional
161-451 4.64e-176

dimethyladenosine transferase-like protein; Provisional


Pssm-ID: 240367 [Multi-domain]  Cd Length: 294  Bit Score: 496.06  E-value: 4.64e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 161 PLPPTMGLPLQKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAIS 240
Cdd:PTZ00338   1 TGGSKSGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 241 NG-FMNLAVRHGDALRSDLGVFDVCAANLPYQISSHFLLRLLAHRPPFRCAVLMFQKEFGERLMAQPGDKNYCRLAANVS 319
Cdd:PTZ00338  81 SPlASKLEVIEGDALKTEFPYFDVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQKEFALRLLAQPGDELYCRLSVNTQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 320 LFCTVQRVCKVDAKHFTPPPKVDSVVVKVVPRPNLIDVDFKEWDGLMRICFGRKNRTLHALFRRASILSMLEANYKTWCT 399
Cdd:PTZ00338 161 LLCRVTHLMKVSKNSFNPPPKVESSVVRIEPKNPPPDVDFEEWDGLLRICFSRKNKTLSAIFKTKSVLQTLEHNYKSWCT 240
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 237835739 400 -LNKCAPTSQ-PFREFCLGVLSATGLGDRRSVTIDIDTYFSLLLAFNKKGIHFV 451
Cdd:PTZ00338 241 mINKKVPVSLePFKEFIAEILEDSGMFEKRSVKLDIDDFLKLLLAFNKKGIHFV 294
RsmA COG0030
16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase ...
163-392 2.18e-63

16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity) [Translation, ribosomal structure and biogenesis]; 16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity) is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 439801 [Multi-domain]  Cd Length: 270  Bit Score: 206.90  E-value: 2.18e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 163 PPTMGLPLQKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAISNG 242
Cdd:COG0030    4 SRRYGLRPKKRLGQNFLIDPNIIRRIVDAAGITPGDTVLEIGPGLGALTRALLERAARVTAVEIDRRLAAILRETFAAYP 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 243 fmNLAVRHGDALRSDL-----GVFDVCAANLPYQISSHFLLRLLAHRPPFRCAVLMFQKEFGERLMAQPGDKNYCRLAAN 317
Cdd:COG0030   84 --NLTVIEGDALKVDLpalaaGEPLKVVGNLPYNISTPILFKLLEARPPIEDAVLMVQKEVAERLVAKPGSKDYGRLSVL 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 318 VSLFCTVQRVCKVDAKHFTPPPKvdsvv--vkvvPRPNLIDVDFKEWDGLMRICFGRKNRTLH----ALFRRASILSMLE 391
Cdd:COG0030  162 VQYYADVEILFTVPPEAFYPPPKvdsavvrltprPEPLVPVADEKLFFRVVKAAFSQRRKTLRnslkSLFSKERLEEALE 241

                 .
gi 237835739 392 A 392
Cdd:COG0030  242 A 242
ksgA TIGR00755
ribosomal RNA small subunit methyltransferase A; In both E. coli and Saccharomyces cerevisiae, ...
172-383 3.61e-60

ribosomal RNA small subunit methyltransferase A; In both E. coli and Saccharomyces cerevisiae, this protein is responsible for the dimethylation of two adjacent adenosine residues in a conserved hairpin of 16S rRNA in bacteria, 18S rRNA in eukaryotes. This adjacent dimethylation is the only rRNA modification shared by bacteria and eukaryotes. A single member of this family is present in each of the first 20 completed microbial genomes. This protein is essential in yeast, but not in E. coli, where its deletion leads to resistance to the antibiotic kasugamycin. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 273252 [Multi-domain]  Cd Length: 254  Bit Score: 198.22  E-value: 3.61e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739  172 KKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAIsnGFMNLAVRHG 251
Cdd:TIGR00755   5 KSLGQNFLVDENVIRKIVEAANIQEGDRVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAERLRKLLS--LYNNLEIIEG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739  252 DALRSDLGVFDV----CAANLPYQISSHFLLRLLAHRPPFRCAVLMFQKEFGERLMAQPGDKNYCRLAANVSLFCTVQRV 327
Cdd:TIGR00755  83 DALKFDLNELAKdltkVVGNLPYNISSPLIFKLLKEKDAFKLAVLMVQKEVAERLVAKPGSKDYGRLSVLVQYYANVEIV 162
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 237835739  328 CKVDAKHFTPPPKVDSVVVKVVPRPNLI-DVDFKEWDGLMRICFGRKNRTLHALFRR 383
Cdd:TIGR00755 163 FKVPPSAFYPPPKVDSAVVRLVPLKRKPsPKDFALFEELLKAAFQQRRKTLRNNLKN 219
rADc smart00650
Ribosomal RNA adenine dimethylases;
184-340 3.47e-55

Ribosomal RNA adenine dimethylases;


Pssm-ID: 128898  Cd Length: 169  Bit Score: 181.94  E-value: 3.47e-55
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739   184 VLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAISNGfmNLAVRHGDALRSDLG--VF 261
Cdd:smart00650   1 VIDKIVRAANLRPGDTVLEIGPGKGALTEELLERAKRVTAIEIDPRLAPRLREKFAAAD--NLTVIHGDALKFDLPklQP 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 237835739   262 DVCAANLPYQISSHFLLRLLAHRPPFRCAVLMFQKEFGERLMAQPGDKNYCRLAANVSLFCTVQRVCKVDAKHFTPPPK 340
Cdd:smart00650  79 YKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPGSKDYGRLSVLLQPYADVKILFKVPPSAFRPPPK 157
RrnaAD pfam00398
Ribosomal RNA adenine dimethylase;
167-413 2.65e-51

Ribosomal RNA adenine dimethylase;


Pssm-ID: 395321 [Multi-domain]  Cd Length: 263  Bit Score: 175.25  E-value: 2.65e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739  167 GLPLQKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAISNGfmNL 246
Cdd:pfam00398   1 GNKFRTSYGQNFLKDPKVINEIVDKANLRESDTVLEIGPGKGALTVILAKRAKQVVAIEIDPRLAKLLQKKLSLDE--NL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739  247 AVRHGDALRSDLGVF-------DVCAANLPYQISSHFLLRLL-AHRPPFRCAVLMFQKEFGERLMAQPGDKNYCRLAANV 318
Cdd:pfam00398  79 TVIHQDFLKFEFPSLvthihqeFLVVGNLPYNISTPIVKQLLfESRFGIVDMLLMLQKEFARRLLARPGSKLYSRLSVLR 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739  319 SLFCTVQRVCKVDAKHFTPPPKVDSVVVKVVPRPNLI--DVDFKEWDGLMRICFGRKNRTLHALFRRASILSMLEANYKT 396
Cdd:pfam00398 159 QAFTDVKLVAKVPPSIFSPPPKVDSALVRLERHDPDPhpVKDLDVYDSVVRKLFNRKRKTLSTSLKSLFPGGQLQAFSSH 238
                         250       260
                  ....*....|....*....|
gi 237835739  397 WCTLN---KCAPTSQPFREF 413
Cdd:pfam00398 239 GINDNalvKKLSPEQTLDIF 258
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
199-295 3.02e-09

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 54.36  E-value: 3.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 199 TVLEIGPGTGNLTMRLL-PVAREVVALDVDARMVNEVKKRAISNGFMNLAVRHGDALRSDLGV---FDVCAANLPYQISS 274
Cdd:cd02440    1 RVLDLGCGTGALALALAsGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEAdesFDVIISDPPLHHLV 80
                         90       100
                 ....*....|....*....|...
gi 237835739 275 HFLLRLL--AHRPPFRCAVLMFQ 295
Cdd:cd02440   81 EDLARFLeeARRLLKPGGVLVLT 103
 
Name Accession Description Interval E-value
PTZ00338 PTZ00338
dimethyladenosine transferase-like protein; Provisional
161-451 4.64e-176

dimethyladenosine transferase-like protein; Provisional


Pssm-ID: 240367 [Multi-domain]  Cd Length: 294  Bit Score: 496.06  E-value: 4.64e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 161 PLPPTMGLPLQKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAIS 240
Cdd:PTZ00338   1 TGGSKSGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQN 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 241 NG-FMNLAVRHGDALRSDLGVFDVCAANLPYQISSHFLLRLLAHRPPFRCAVLMFQKEFGERLMAQPGDKNYCRLAANVS 319
Cdd:PTZ00338  81 SPlASKLEVIEGDALKTEFPYFDVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQKEFALRLLAQPGDELYCRLSVNTQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 320 LFCTVQRVCKVDAKHFTPPPKVDSVVVKVVPRPNLIDVDFKEWDGLMRICFGRKNRTLHALFRRASILSMLEANYKTWCT 399
Cdd:PTZ00338 161 LLCRVTHLMKVSKNSFNPPPKVESSVVRIEPKNPPPDVDFEEWDGLLRICFSRKNKTLSAIFKTKSVLQTLEHNYKSWCT 240
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 237835739 400 -LNKCAPTSQ-PFREFCLGVLSATGLGDRRSVTIDIDTYFSLLLAFNKKGIHFV 451
Cdd:PTZ00338 241 mINKKVPVSLePFKEFIAEILEDSGMFEKRSVKLDIDDFLKLLLAFNKKGIHFV 294
RsmA COG0030
16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase ...
163-392 2.18e-63

16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity) [Translation, ribosomal structure and biogenesis]; 16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity) is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 439801 [Multi-domain]  Cd Length: 270  Bit Score: 206.90  E-value: 2.18e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 163 PPTMGLPLQKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAISNG 242
Cdd:COG0030    4 SRRYGLRPKKRLGQNFLIDPNIIRRIVDAAGITPGDTVLEIGPGLGALTRALLERAARVTAVEIDRRLAAILRETFAAYP 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 243 fmNLAVRHGDALRSDL-----GVFDVCAANLPYQISSHFLLRLLAHRPPFRCAVLMFQKEFGERLMAQPGDKNYCRLAAN 317
Cdd:COG0030   84 --NLTVIEGDALKVDLpalaaGEPLKVVGNLPYNISTPILFKLLEARPPIEDAVLMVQKEVAERLVAKPGSKDYGRLSVL 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 318 VSLFCTVQRVCKVDAKHFTPPPKvdsvv--vkvvPRPNLIDVDFKEWDGLMRICFGRKNRTLH----ALFRRASILSMLE 391
Cdd:COG0030  162 VQYYADVEILFTVPPEAFYPPPKvdsavvrltprPEPLVPVADEKLFFRVVKAAFSQRRKTLRnslkSLFSKERLEEALE 241

                 .
gi 237835739 392 A 392
Cdd:COG0030  242 A 242
ksgA TIGR00755
ribosomal RNA small subunit methyltransferase A; In both E. coli and Saccharomyces cerevisiae, ...
172-383 3.61e-60

ribosomal RNA small subunit methyltransferase A; In both E. coli and Saccharomyces cerevisiae, this protein is responsible for the dimethylation of two adjacent adenosine residues in a conserved hairpin of 16S rRNA in bacteria, 18S rRNA in eukaryotes. This adjacent dimethylation is the only rRNA modification shared by bacteria and eukaryotes. A single member of this family is present in each of the first 20 completed microbial genomes. This protein is essential in yeast, but not in E. coli, where its deletion leads to resistance to the antibiotic kasugamycin. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase [Protein synthesis, tRNA and rRNA base modification]


Pssm-ID: 273252 [Multi-domain]  Cd Length: 254  Bit Score: 198.22  E-value: 3.61e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739  172 KKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAIsnGFMNLAVRHG 251
Cdd:TIGR00755   5 KSLGQNFLVDENVIRKIVEAANIQEGDRVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAERLRKLLS--LYNNLEIIEG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739  252 DALRSDLGVFDV----CAANLPYQISSHFLLRLLAHRPPFRCAVLMFQKEFGERLMAQPGDKNYCRLAANVSLFCTVQRV 327
Cdd:TIGR00755  83 DALKFDLNELAKdltkVVGNLPYNISSPLIFKLLKEKDAFKLAVLMVQKEVAERLVAKPGSKDYGRLSVLVQYYANVEIV 162
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 237835739  328 CKVDAKHFTPPPKVDSVVVKVVPRPNLI-DVDFKEWDGLMRICFGRKNRTLHALFRR 383
Cdd:TIGR00755 163 FKVPPSAFYPPPKVDSAVVRLVPLKRKPsPKDFALFEELLKAAFQQRRKTLRNNLKN 219
ksgA PRK14896
16S ribosomal RNA methyltransferase A;
172-394 1.65e-58

16S ribosomal RNA methyltransferase A;


Pssm-ID: 237852 [Multi-domain]  Cd Length: 258  Bit Score: 193.96  E-value: 1.65e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 172 KKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAISNGfmNLAVRHG 251
Cdd:PRK14896   5 KKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAG--NVEIIEG 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 252 DALRSDLGVFDVCAANLPYQISSHFLLRLLAHRppFRCAVLMFQKEFGERLMAQPGDKNYCRLAANVSLFCTVQRVCKVD 331
Cdd:PRK14896  83 DALKVDLPEFNKVVSNLPYQISSPITFKLLKHG--FEPAVLMYQKEFAERMVAKPGTKEYGRLSVMVQYYADVEIVEKVP 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 237835739 332 AKHFTPPPKVDSVVVKVVPRPNLIDVDFKE-WDGLMRICFGRKNRTLhalfRRASILSMLEANY 394
Cdd:PRK14896 161 PGAFSPKPKVDSAVVRLTPREPKYEVYDEDfFDDFVKALFQHRRKTL----RNALKNSAHISGK 220
rADc smart00650
Ribosomal RNA adenine dimethylases;
184-340 3.47e-55

Ribosomal RNA adenine dimethylases;


Pssm-ID: 128898  Cd Length: 169  Bit Score: 181.94  E-value: 3.47e-55
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739   184 VLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAISNGfmNLAVRHGDALRSDLG--VF 261
Cdd:smart00650   1 VIDKIVRAANLRPGDTVLEIGPGKGALTEELLERAKRVTAIEIDPRLAPRLREKFAAAD--NLTVIHGDALKFDLPklQP 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 237835739   262 DVCAANLPYQISSHFLLRLLAHRPPFRCAVLMFQKEFGERLMAQPGDKNYCRLAANVSLFCTVQRVCKVDAKHFTPPPK 340
Cdd:smart00650  79 YKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPGSKDYGRLSVLLQPYADVKILFKVPPSAFRPPPK 157
RrnaAD pfam00398
Ribosomal RNA adenine dimethylase;
167-413 2.65e-51

Ribosomal RNA adenine dimethylase;


Pssm-ID: 395321 [Multi-domain]  Cd Length: 263  Bit Score: 175.25  E-value: 2.65e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739  167 GLPLQKKFGQHLLKNQAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAISNGfmNL 246
Cdd:pfam00398   1 GNKFRTSYGQNFLKDPKVINEIVDKANLRESDTVLEIGPGKGALTVILAKRAKQVVAIEIDPRLAKLLQKKLSLDE--NL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739  247 AVRHGDALRSDLGVF-------DVCAANLPYQISSHFLLRLL-AHRPPFRCAVLMFQKEFGERLMAQPGDKNYCRLAANV 318
Cdd:pfam00398  79 TVIHQDFLKFEFPSLvthihqeFLVVGNLPYNISTPIVKQLLfESRFGIVDMLLMLQKEFARRLLARPGSKLYSRLSVLR 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739  319 SLFCTVQRVCKVDAKHFTPPPKVDSVVVKVVPRPNLI--DVDFKEWDGLMRICFGRKNRTLHALFRRASILSMLEANYKT 396
Cdd:pfam00398 159 QAFTDVKLVAKVPPSIFSPPPKVDSALVRLERHDPDPhpVKDLDVYDSVVRKLFNRKRKTLSTSLKSLFPGGQLQAFSSH 238
                         250       260
                  ....*....|....*....|
gi 237835739  397 WCTLN---KCAPTSQPFREF 413
Cdd:pfam00398 239 GINDNalvKKLSPEQTLDIF 258
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
186-285 1.62e-11

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 61.93  E-value: 1.62e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 186 DKIVQAADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAISNGFmNLAVRHGDALRSDL--GVFDV 263
Cdd:COG2226   12 EALLAALGLRPGARVLDLGCGTGRLALALAERGARVTGVDISPEMLELARERAAEAGL-NVEFVVGDAEDLPFpdGSFDL 90
                         90       100
                 ....*....|....*....|..
gi 237835739 264 caanlpyqISSHFLLRLLAHRP 285
Cdd:COG2226   91 --------VISSFVLHHLPDPE 104
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
199-295 3.02e-09

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 54.36  E-value: 3.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 199 TVLEIGPGTGNLTMRLL-PVAREVVALDVDARMVNEVKKRAISNGFMNLAVRHGDALRSDLGV---FDVCAANLPYQISS 274
Cdd:cd02440    1 RVLDLGCGTGALALALAsGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEAdesFDVIISDPPLHHLV 80
                         90       100
                 ....*....|....*....|...
gi 237835739 275 HFLLRLL--AHRPPFRCAVLMFQ 295
Cdd:cd02440   81 EDLARFLeeARRLLKPGGVLVLT 103
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
200-267 5.36e-09

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 53.34  E-value: 5.36e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 237835739  200 VLEIGPGTGNLTMRLLP-VAREVVALDVDARMVNEVKKRAISNGFmNLAVRHGDA--LRSDLGVFDVCAAN 267
Cdd:pfam13649   1 VLDLGCGTGRLTLALARrGGARVTGVDLSPEMLERARERAAEAGL-NVEFVQGDAedLPFPDGSFDLVVSS 70
Pcm COG2518
Protein-L-isoaspartate O-methyltransferase [Posttranslational modification, protein turnover, ...
187-263 6.28e-09

Protein-L-isoaspartate O-methyltransferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442008 [Multi-domain]  Cd Length: 197  Bit Score: 55.86  E-value: 6.28e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 237835739 187 KIVQAADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAISNGFMNLAVRHGDALR--SDLGVFDV 263
Cdd:COG2518   57 RMLEALDLKPGDRVLEIGTGSGYQAAVLARLAGRVYSVERDPELAERARERLAALGYDNVTVRVGDGALgwPEHAPFDR 135
PRK14968 PRK14968
putative methyltransferase; Provisional
190-270 3.71e-08

putative methyltransferase; Provisional


Pssm-ID: 237872 [Multi-domain]  Cd Length: 188  Bit Score: 53.36  E-value: 3.71e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 190 QAADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAISNGFMNLAVrhgDALRSDL------GVFDV 263
Cdd:PRK14968  17 ENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGV---EVIRSDLfepfrgDKFDV 93

                 ....*..
gi 237835739 264 CAANLPY 270
Cdd:PRK14968  94 ILFNPPY 100
COG4976 COG4976
Predicted methyltransferase, contains TPR repeat [General function prediction only];
182-270 6.31e-08

Predicted methyltransferase, contains TPR repeat [General function prediction only];


Pssm-ID: 444001 [Multi-domain]  Cd Length: 181  Bit Score: 52.69  E-value: 6.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 182 QAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAISNGFMnlavrHGD--ALRSDLG 259
Cdd:COG4976   32 ALLAEELLARLPPGPFGRVLDLGCGTGLLGEALRPRGYRLTGVDLSEEMLAKAREKGVYDRLL-----VADlaDLAEPDG 106
                         90
                 ....*....|...
gi 237835739 260 VFD--VCAANLPY 270
Cdd:COG4976  107 RFDliVAADVLTY 119
PRK08317 PRK08317
hypothetical protein; Provisional
182-264 1.44e-07

hypothetical protein; Provisional


Pssm-ID: 181382 [Multi-domain]  Cd Length: 241  Bit Score: 52.25  E-value: 1.44e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 182 QAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLlpvAREV------VALDVDARMVNEVKKRAISNGfMNLAVRHGDALR 255
Cdd:PRK08317   5 RRYRARTFELLAVQPGDRVLDVGCGPGNDAREL---ARRVgpegrvVGIDRSEAMLALAKERAAGLG-PNVEFVRGDADG 80
                         90
                 ....*....|.
gi 237835739 256 SDL--GVFDVC 264
Cdd:PRK08317  81 LPFpdGSFDAV 91
hemK_rel_arch TIGR00537
HemK-related putative methylase; The gene hemK from E. coli was found to contribute to heme ...
191-270 7.06e-07

HemK-related putative methylase; The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase. Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 129628 [Multi-domain]  Cd Length: 179  Bit Score: 49.47  E-value: 7.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739  191 AADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAISNGfMNLAVRHGDALRSDLGVFDVCAANLPY 270
Cdd:TIGR00537  14 NLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNN-VGLDVVMTDLFKGVRGKFDVILFNPPY 92
UbiG COG2227
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ...
185-263 2.49e-06

2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 441829 [Multi-domain]  Cd Length: 126  Bit Score: 46.55  E-value: 2.49e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 185 LDKIVQAAdIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAISngfMNLAVRHGDALRSDL--GVFD 262
Cdd:COG2227   14 LAALLARL-LPAGGRVLDVGCGTGRLALALARRGADVTGVDISPEALEIARERAAE---LNVDFVQGDLEDLPLedGSFD 89

                 .
gi 237835739 263 V 263
Cdd:COG2227   90 L 90
Methyltransf_11 pfam08241
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
201-268 2.72e-06

Methyltransferase domain; Members of this family are SAM dependent methyltransferases.


Pssm-ID: 462406 [Multi-domain]  Cd Length: 94  Bit Score: 45.73  E-value: 2.72e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739  201 LEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAISNGfmnLAVRHGDALRSDL--GVFDVCAANL 268
Cdd:pfam08241   1 LDVGCGTGLLTELLARLGARVTGVDISPEMLELAREKAPREG---LTFVVGDAEDLPFpdNSFDLVLSSE 67
Methyltransf_12 pfam08242
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
201-263 6.26e-06

Methyltransferase domain; Members of this family are SAM dependent methyltransferases.


Pssm-ID: 400515 [Multi-domain]  Cd Length: 98  Bit Score: 44.67  E-value: 6.26e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 237835739  201 LEIGPGTGNLTMRLLPVAR--EVVALDVDARMVNEVKKRAISNG---FMNLAVRHGDALRSDLGVFDV 263
Cdd:pfam08242   1 LEIGCGTGTLLRALLEALPglEYTGLDISPAALEAARERLAALGllnAVRVELFQLDLGELDPGSFDV 68
Trm11 COG1041
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ...
188-275 9.28e-06

tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 440663 [Multi-domain]  Cd Length: 172  Bit Score: 46.10  E-value: 9.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 188 IVQAADIRSSDTVLEigP--GTGNLTMRLLPVAREVVALDVDARMVNEVKKRAISNGFMNLAVRHGDALRSDL--GVFDV 263
Cdd:COG1041   18 LVNLAGAKEGDTVLD--PfcGTGTILIEAGLLGRRVIGSDIDPKMVEGARENLEHYGYEDADVIRGDARDLPLadESVDA 95
                         90
                 ....*....|..
gi 237835739 264 CAANLPYQISSH 275
Cdd:COG1041   96 IVTDPPYGRSSK 107
Tam COG4106
Trans-aconitate methyltransferase [Energy production and conversion];
199-267 1.43e-05

Trans-aconitate methyltransferase [Energy production and conversion];


Pssm-ID: 443282 [Multi-domain]  Cd Length: 100  Bit Score: 43.66  E-value: 1.43e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 237835739 199 TVLEIGPGTGNLTMRLL---PVAReVVALDVDARMVNEVKKRAIsngfmNLAVRHGDALRSDL-GVFDVCAAN 267
Cdd:COG4106    4 RVLDLGCGTGRLTALLAerfPGAR-VTGVDLSPEMLARARARLP-----NVRFVVADLRDLDPpEPFDLVVSN 70
Methyltransf_31 pfam13847
Methyltransferase domain; This family appears to have methyltransferase activity.
194-254 1.84e-05

Methyltransferase domain; This family appears to have methyltransferase activity.


Pssm-ID: 463998 [Multi-domain]  Cd Length: 150  Bit Score: 44.72  E-value: 1.84e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 237835739  194 IRSSDTVLEIGPGTGNLTMRLLPVAR---EVVALDVDARMVNEVKKRAISNGFMNLAVRHGDAL 254
Cdd:pfam13847   1 IDKGMRVLDLGCGTGHLSFELAEELGpnaEVVGIDISEEAIEKARENAQKLGFDNVEFEQGDIE 64
SmtA COG0500
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ...
183-283 3.13e-05

SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 440266 [Multi-domain]  Cd Length: 199  Bit Score: 44.91  E-value: 3.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 183 AVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLL-PVAREVVALDVDARMVNEVKKRAISNGFMNLAVRHGDALRSD---L 258
Cdd:COG0500   13 GLAALLALLERLPKGGRVLDLGCGTGRNLLALAaRFGGRVIGIDLSPEAIALARARAAKAGLGNVEFLVADLAELDplpA 92
                         90       100
                 ....*....|....*....|....*.
gi 237835739 259 GVFD-VCAANLPYQISSHFLLRLLAH 283
Cdd:COG0500   93 ESFDlVVAFGVLHHLPPEEREALLRE 118
Cfa COG2230
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport ...
182-263 7.35e-05

Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism];


Pssm-ID: 441831 [Multi-domain]  Cd Length: 158  Bit Score: 42.99  E-value: 7.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 182 QAVLDKIVQAADIRSSDTVLEIGPGTGNLTMRLlpvARE----VVALDVDARMVNEVKKRAISNGFMNLA-VRHGDALRS 256
Cdd:COG2230   37 EAKLDLILRKLGLKPGMRVLDIGCGWGGLALYL---ARRygvrVTGVTLSPEQLEYARERAAEAGLADRVeVRLADYRDL 113

                 ....*...
gi 237835739 257 DL-GVFDV 263
Cdd:COG2230  114 PAdGQFDA 121
COG3963 COG3963
Phosphatidylethanolamine N-methyltransferase [Lipid transport and metabolism];
186-255 2.41e-04

Phosphatidylethanolamine N-methyltransferase [Lipid transport and metabolism];


Pssm-ID: 443163  Cd Length: 193  Bit Score: 42.12  E-value: 2.41e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 237835739 186 DKIVQAADIRSSDTVLEIGPGTGNLTM----RLLPVAReVVALDVDARMVNEVKKRaisngFMNLAVRHGDALR 255
Cdd:COG3963   35 RAMASEVDWSGAGPVVELGPGTGVFTRailaRGVPDAR-LLAVEINPEFAEHLRRR-----FPRVTVVNGDAED 102
Gcd14 COG2519
tRNA A58 N-methylase Trm61 [Translation, ribosomal structure and biogenesis]; tRNA A58 ...
188-215 4.47e-04

tRNA A58 N-methylase Trm61 [Translation, ribosomal structure and biogenesis]; tRNA A58 N-methylase Trm61 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 442009 [Multi-domain]  Cd Length: 249  Bit Score: 42.07  E-value: 4.47e-04
                         10        20
                 ....*....|....*....|....*...
gi 237835739 188 IVQAADIRSSDTVLEIGPGTGNLTMRLL 215
Cdd:COG2519   83 IIARLDIFPGARVLEAGTGSGALTLALA 110
COG4076 COG4076
Predicted RNA methylase [General function prediction only];
194-258 6.02e-04

Predicted RNA methylase [General function prediction only];


Pssm-ID: 443253 [Multi-domain]  Cd Length: 230  Bit Score: 41.56  E-value: 6.02e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 237835739 194 IRSSDTVLEIGPGTGNLTMRLLP-VAREVVALDVDARMVNEVKKRAISNGFM-NLAVRHGDALRSDL 258
Cdd:COG4076   33 VKPGDVVLDIGTGSGLLSMLAARaGAKKVYAVEVNPDIAAVARRIIAANGLSdRITVINADATDLDL 99
PRK07580 PRK07580
Mg-protoporphyrin IX methyl transferase; Validated
199-264 8.22e-04

Mg-protoporphyrin IX methyl transferase; Validated


Pssm-ID: 236059 [Multi-domain]  Cd Length: 230  Bit Score: 40.98  E-value: 8.22e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 237835739 199 TVLEIGPGTGNLTmrlLPVAR---EVVALDVDARMVNEVKKRA---ISNGFMNLAVrhGDaLRSDLGVFD--VC 264
Cdd:PRK07580  66 RILDAGCGVGSLS---IPLARrgaKVVASDISPQMVEEARERApeaGLAGNITFEV--GD-LESLLGRFDtvVC 133
ubiE PRK00216
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol ...
174-255 1.57e-03

bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE;


Pssm-ID: 234689 [Multi-domain]  Cd Length: 239  Bit Score: 40.14  E-value: 1.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 174 FGQHLLKNQAVldkiVQAADIRSSDTVLEIGPGTGNLTMRLLPVAR---EVVALDVDARMVNEVKKRAISNGFM-NLAVR 249
Cdd:PRK00216  33 FGLHRVWRRKT----IKWLGVRPGDKVLDLACGTGDLAIALAKAVGktgEVVGLDFSEGMLAVGREKLRDLGLSgNVEFV 108

                 ....*.
gi 237835739 250 HGDALR 255
Cdd:PRK00216 109 QGDAEA 114
pcm PRK00312
protein-L-isoaspartate(D-aspartate) O-methyltransferase;
187-252 3.52e-03

protein-L-isoaspartate(D-aspartate) O-methyltransferase;


Pssm-ID: 178974 [Multi-domain]  Cd Length: 212  Bit Score: 39.03  E-value: 3.52e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 237835739 187 KIVQAADIRSSDTVLEIGPGTGNLTMRLLPVAREVVALDVDARMVNEVKKRAISNGFMNLAVRHGD 252
Cdd:PRK00312  69 RMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD 134
TrmN6 COG4123
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ...
191-270 3.74e-03

tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 443299 [Multi-domain]  Cd Length: 238  Bit Score: 38.97  E-value: 3.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 191 AADIRSSDTVLEIGPGTGNLTMRL---LPVAReVVALDVDARMVNEVKKRAISNGFMN-LAVRHGD--ALRSDLGV--FD 262
Cdd:COG4123   32 FAPVKKGGRVLDLGTGTGVIALMLaqrSPGAR-ITGVEIQPEAAELARRNVALNGLEDrITVIHGDlkEFAAELPPgsFD 110

                 ....*...
gi 237835739 263 VCAANLPY 270
Cdd:COG4123  111 LVVSNPPY 118
COG2263 COG2263
Predicted RNA methylase [General function prediction only];
188-269 3.84e-03

Predicted RNA methylase [General function prediction only];


Pssm-ID: 441864 [Multi-domain]  Cd Length: 199  Bit Score: 38.73  E-value: 3.84e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 237835739 188 IVQAADIRSS---DTVLEIGPGTGNLTMRLLPV-AREVVALDVDARMVnEVKKRAISNGFMNLAVRHGDALR-SDLGVFD 262
Cdd:COG2263   34 LLHLAYLRGDiegKTVLDLGCGTGMLAIGAALLgAKKVVGVDIDPEAL-EIARENAERLGVRVDFIRADVTRiPLGGSVD 112

                 ....*..
gi 237835739 263 VCAANLP 269
Cdd:COG2263  113 TVVMNPP 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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