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Conserved domains on  [gi|564325365|ref|XP_006227989|]
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T-complex protein 10A homolog 2 isoform X4 [Rattus norvegicus]

Protein Classification

T-complex 10 C-terminal domain-containing protein( domain architecture ID 10537651)

T-complex 10 C-terminal domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 398-427 4.31e-09

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


:

Pssm-ID: 462118  Cd Length: 30  Bit Score: 51.66  E-value: 4.31e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 564325365  398 EETVFPDGTFVTVKRNGDKTIMFSNGQKEI 427
Cdd:pfam07202   1 EEIIFPDGTVERVYSDGDKVIEFPNGTREI 30
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 255-284 1.36e-07

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


:

Pssm-ID: 462118  Cd Length: 30  Bit Score: 47.43  E-value: 1.36e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 564325365  255 QEKRHSNGKVERLLSDGRTIITFPNGTRKE 284
Cdd:pfam07202   1 EEIIFPDGTVERVYSDGDKVIEFPNGTREI 30
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 363-391 2.98e-05

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


:

Pssm-ID: 462118  Cd Length: 30  Bit Score: 40.88  E-value: 2.98e-05
                          10        20
                  ....*....|....*....|....*....
gi 564325365  363 EVVQFPNKWTEKFYPDGSKETVFPDGTVK 391
Cdd:pfam07202   1 EEIIFPDGTVERVYSDGDKVIEFPNGTRE 29
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 433-462 1.73e-04

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


:

Pssm-ID: 462118  Cd Length: 30  Bit Score: 38.57  E-value: 1.73e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 564325365  433 KRREFPDGTTKTVYCNGCQETKYASGRIRV 462
Cdd:pfam07202   1 EEIIFPDGTVERVYSDGDKVIEFPNGTREI 30
 
Name Accession Description Interval E-value
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 398-427 4.31e-09

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


Pssm-ID: 462118  Cd Length: 30  Bit Score: 51.66  E-value: 4.31e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 564325365  398 EETVFPDGTFVTVKRNGDKTIMFSNGQKEI 427
Cdd:pfam07202   1 EEIIFPDGTVERVYSDGDKVIEFPNGTREI 30
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 255-284 1.36e-07

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


Pssm-ID: 462118  Cd Length: 30  Bit Score: 47.43  E-value: 1.36e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 564325365  255 QEKRHSNGKVERLLSDGRTIITFPNGTRKE 284
Cdd:pfam07202   1 EEIIFPDGTVERVYSDGDKVIEFPNGTREI 30
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 363-391 2.98e-05

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


Pssm-ID: 462118  Cd Length: 30  Bit Score: 40.88  E-value: 2.98e-05
                          10        20
                  ....*....|....*....|....*....
gi 564325365  363 EVVQFPNKWTEKFYPDGSKETVFPDGTVK 391
Cdd:pfam07202   1 EEIIFPDGTVERVYSDGDKVIEFPNGTRE 29
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 433-462 1.73e-04

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


Pssm-ID: 462118  Cd Length: 30  Bit Score: 38.57  E-value: 1.73e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 564325365  433 KRREFPDGTTKTVYCNGCQETKYASGRIRV 462
Cdd:pfam07202   1 EEIIFPDGTVERVYSDGDKVIEFPNGTREI 30
 
Name Accession Description Interval E-value
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 398-427 4.31e-09

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


Pssm-ID: 462118  Cd Length: 30  Bit Score: 51.66  E-value: 4.31e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 564325365  398 EETVFPDGTFVTVKRNGDKTIMFSNGQKEI 427
Cdd:pfam07202   1 EEIIFPDGTVERVYSDGDKVIEFPNGTREI 30
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 255-284 1.36e-07

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


Pssm-ID: 462118  Cd Length: 30  Bit Score: 47.43  E-value: 1.36e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 564325365  255 QEKRHSNGKVERLLSDGRTIITFPNGTRKE 284
Cdd:pfam07202   1 EEIIFPDGTVERVYSDGDKVIEFPNGTREI 30
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 363-391 2.98e-05

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


Pssm-ID: 462118  Cd Length: 30  Bit Score: 40.88  E-value: 2.98e-05
                          10        20
                  ....*....|....*....|....*....
gi 564325365  363 EVVQFPNKWTEKFYPDGSKETVFPDGTVK 391
Cdd:pfam07202   1 EEIIFPDGTVERVYSDGDKVIEFPNGTRE 29
Tcp10_C pfam07202
T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the ...
 433-462 1.73e-04

T-complex protein 10 C-terminus; This entry represents a repeating unit commonly found in the C terminus of the eukaryotic T-complex protein 10. The T-complex is involved in spermatogenesis in mice. The repeating unit is commonly found 3-4 times, but there is often a gap between the first and second repeats, which is big enough to accommodate another repeat unit. However, the score is insufficient to be included, and could be a degenerate repeat.


Pssm-ID: 462118  Cd Length: 30  Bit Score: 38.57  E-value: 1.73e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 564325365  433 KRREFPDGTTKTVYCNGCQETKYASGRIRV 462
Cdd:pfam07202   1 EEIIFPDGTVERVYSDGDKVIEFPNGTREI 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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