|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
204-432 |
8.68e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 103.16 E-value: 8.68e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEdlerssghCHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtl 283
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE--------LDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 284 gpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAKQLNNLALLCQNQGKFQDVERHYARALSIy 363
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564326480 364 ealggpqDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQEALPAPLGAPQGGTAGEAQQQVSRLCLR 432
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLL 201
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
204-397 |
1.91e-20 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 94.99 E-value: 1.91e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTL 283
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 284 -GPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSI 362
Cdd:NF040586 597 gGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676
|
170 180 190
....*....|....*....|....*....|....*
gi 564326480 363 YEALGGPQDPNVAKTKNNLASAYLKQNKYQQAEEL 397
Cdd:NF040586 677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
34-413 |
5.39e-19 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 90.75 E-value: 5.39e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 34 LEALRaEHHSLAGHLAEALA--GPGPVAgVELLEEKQQVVNhSLEAIELGLGEA--------QVLLALSAHvGVLEAEKQ 103
Cdd:NF040586 244 LDRLR-ERSPAAARLLELCAffGPEPIP-LDLLRSSDEMAR-LLLPYDLRLRELlldgillsRALRELGRY-ALARVDSG 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 104 RLRAQARRLAQenTWLREELEETQRRlRASEEAvaqleeekshlqfLGQLRQYDPPEESQRPDSPPRRDSLAS-LFPSEE 182
Cdd:NF040586 320 RRTLQVHRLVQ--AVLRDRLSEEERA-RARHEV-------------HRILAAAAPGDEPDDPRNWPRYAELWPhLEPSGA 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 183 EEKKGPEaagaaaaqqggyeipARlRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQ 262
Cdd:NF040586 384 LESDDPE---------------VR-RLLLDQVRYLYLRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSL 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 263 NKYKEATELLHDAL--QIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLA 340
Cdd:NF040586 448 GRYEEARELDEDTLerQRRVLGLGEDHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLA 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 341 LLCQNQGKFQDVERHYARALSIYEALGGPQDPNVAKTKNNLASAYLKQNKYQQAEEL-------YKEILSQEALPAPLGA 413
Cdd:NF040586 528 VSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLleealerYREVLGGPDHPDTLRA 607
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
247-323 |
1.53e-16 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 74.35 E-value: 1.53e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564326480 247 DVATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREK 323
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
204-340 |
5.44e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 81.12 E-value: 5.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPD-VATMLNiLALVYRDQNKYKEATELLHDALQIREQT 282
Cdd:NF040586 602 PDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLDRYRRV 680
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 564326480 283 LGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLA 340
Cdd:NF040586 681 LGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPYTLAAAVNLA 738
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
221-404 |
8.73e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 80.35 E-value: 8.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 221 GRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLAVL 300
Cdd:NF040586 492 GRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARD 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 301 YGKRGRYREAEPLCQRALEIREKVL-GADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIYEALGGPQDPNVAKTKN 379
Cdd:NF040586 572 LRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAAL 651
|
170 180
....*....|....*....|....*
gi 564326480 380 NLASAYLKQNKYQQAEELYKEILSQ 404
Cdd:NF040586 652 SLANDLRALGDADEARELAREVLDR 676
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
212-332 |
9.82e-09 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 58.01 E-value: 9.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 212 NLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHP-DVATMLN---ILALVYRDQNKYKEATELLHDALQIREQTLGPEH 287
Cdd:NF040586 694 NLAVLLRALGDPEEARELAEAALEGLRERLGPDHPyTLAAAVNlanDLAALGDLDAALGEEALERLRRLLGEDLRAGPDH 773
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 564326480 288 PAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDV 332
Cdd:NF040586 774 PDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGPDHPDT 818
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
245-402 |
5.59e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.39 E-value: 5.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 245 HPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtlgpeHPAVAATLNNLAVLYGKRGRYReAEPLCQRALEIRekv 324
Cdd:TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYLELKDPR-ALEYAERALKLA--- 833
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564326480 325 lgadhPDVAKQLNNLALLCQNQGKFQDVERHYARALSIyealggpqDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 402
Cdd:TIGR02917 834 -----PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALALLATGRKAEARKELDKLL 898
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
21-148 |
1.09e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 21 EELVRQTRQVVQGLEALRAEHHSLAGHLAEAlagpgpVAGVELLEEKQQVVNHSLEAIELGLGEAQ-VLLALSAHVGVLE 99
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAELEEL------EAELAELEAELEELRLELEELELELEEAQaEEYELLAELARLE 301
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 564326480 100 AEKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEKSHLQ 148
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE 350
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
21-148 |
1.10e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 21 EELVRQTRQVVQGLEALRAEHHSLAGHLAEALAGpgpvagVELLEEKQQVVNHSLEAIElglgeaQVLLALSAHVGVLEA 100
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEK------LEELRLEVSELEEEIEELQ------KELYALANEISRLEQ 302
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 564326480 101 EKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEKSHLQ 148
Cdd:TIGR02168 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
291-323 |
3.10e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.20 E-value: 3.10e-04
10 20 30
....*....|....*....|....*....|...
gi 564326480 291 AATLNNLAVLYGKRGRYREAEPLCQRALEIREK 323
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
212-292 |
2.41e-03 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 40.67 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 212 NLVIQYASQGRYEVAvpLCRQALEDLERS------SGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTLGP 285
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRRLlgedlrAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGP 813
|
....*..
gi 564326480 286 EHPAVAA 292
Cdd:NF040586 814 DHPDTVA 820
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
98-164 |
5.70e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 39.55 E-value: 5.70e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564326480 98 LEAEKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEK----SHLQFLGQLRQYDPPEESQR 164
Cdd:PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQqeleAQLEQLQEKAAETSQERKQK 217
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
204-432 |
8.68e-25 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 103.16 E-value: 8.68e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEdlerssghCHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtl 283
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE--------LDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 284 gpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAKQLNNLALLCQNQGKFQDVERHYARALSIy 363
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564326480 364 ealggpqDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQEALPAPLGAPQGGTAGEAQQQVSRLCLR 432
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLL 201
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
204-397 |
1.91e-20 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 94.99 E-value: 1.91e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTL 283
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 284 -GPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSI 362
Cdd:NF040586 597 gGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676
|
170 180 190
....*....|....*....|....*....|....*
gi 564326480 363 YEALGGPQDPNVAKTKNNLASAYLKQNKYQQAEEL 397
Cdd:NF040586 677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
34-413 |
5.39e-19 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 90.75 E-value: 5.39e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 34 LEALRaEHHSLAGHLAEALA--GPGPVAgVELLEEKQQVVNhSLEAIELGLGEA--------QVLLALSAHvGVLEAEKQ 103
Cdd:NF040586 244 LDRLR-ERSPAAARLLELCAffGPEPIP-LDLLRSSDEMAR-LLLPYDLRLRELlldgillsRALRELGRY-ALARVDSG 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 104 RLRAQARRLAQenTWLREELEETQRRlRASEEAvaqleeekshlqfLGQLRQYDPPEESQRPDSPPRRDSLAS-LFPSEE 182
Cdd:NF040586 320 RRTLQVHRLVQ--AVLRDRLSEEERA-RARHEV-------------HRILAAAAPGDEPDDPRNWPRYAELWPhLEPSGA 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 183 EEKKGPEaagaaaaqqggyeipARlRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQ 262
Cdd:NF040586 384 LESDDPE---------------VR-RLLLDQVRYLYLRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSL 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 263 NKYKEATELLHDAL--QIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLA 340
Cdd:NF040586 448 GRYEEARELDEDTLerQRRVLGLGEDHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLA 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 341 LLCQNQGKFQDVERHYARALSIYEALGGPQDPNVAKTKNNLASAYLKQNKYQQAEEL-------YKEILSQEALPAPLGA 413
Cdd:NF040586 528 VSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLleealerYREVLGGPDHPDTLRA 607
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
134-411 |
7.58e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 90.05 E-value: 7.58e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 134 EEAVAQLEEEKSHLQFLGQLRQYDPPEESQRPDSPPRRDSLASLFPSEEEEKKGPEAAGAAAAQQGGYEIPARLRTLHNL 213
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 214 VIQ----YASQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtlgpeHPA 289
Cdd:COG3914 81 LELaallLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALAL--------NPD 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 290 VAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAKQLNNLALLCQNQGKFQDVERHYARALSIyealggp 369
Cdd:COG3914 145 FAEAYLNLGEALRRLGRLEEAIAALRRALELD--------PDNAEALNNLGNALQDLGRLEEAIAAYRRALEL------- 209
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 564326480 370 qDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQEALPAPL 411
Cdd:COG3914 210 -DPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSEL 250
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
204-429 |
1.24e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 82.36 E-value: 1.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIReqtl 283
Cdd:COG0457 39 PDDAEALYNLGLAYLRLGRYEEALADYEQALEL--------DPDDAEALNNLGLALQALGRYEEALEDYDKALELD---- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 284 gpehPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAKQLNNLALLCQNQGKFQDVERHYARALSIY 363
Cdd:COG0457 107 ----PDDAEALYNLGLALLELGRYDEAIEAYERALELD--------PDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564326480 364 EALGGPQDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQEALPAPLGAPQGGTAGEAQQQVSRL 429
Cdd:COG0457 175 LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
247-323 |
1.53e-16 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 74.35 E-value: 1.53e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564326480 247 DVATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREK 323
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
290-365 |
4.31e-16 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 73.19 E-value: 4.31e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564326480 290 VAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIYEA 365
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
204-340 |
5.44e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 81.12 E-value: 5.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPD-VATMLNiLALVYRDQNKYKEATELLHDALQIREQT 282
Cdd:NF040586 602 PDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLDRYRRV 680
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 564326480 283 LGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLA 340
Cdd:NF040586 681 LGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPYTLAAAVNLA 738
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
221-404 |
8.73e-16 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 80.35 E-value: 8.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 221 GRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLAVL 300
Cdd:NF040586 492 GRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARD 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 301 YGKRGRYREAEPLCQRALEIREKVL-GADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIYEALGGPQDPNVAKTKN 379
Cdd:NF040586 572 LRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAAL 651
|
170 180
....*....|....*....|....*
gi 564326480 380 NLASAYLKQNKYQQAEELYKEILSQ 404
Cdd:NF040586 652 SLANDLRALGDADEARELAREVLDR 676
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
217-405 |
7.83e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 71.68 E-value: 7.83e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 217 YASQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIReqtlgpehPAVAATLNN 296
Cdd:COG2956 52 YRRRGEYDRAIRIHQKLLER--------DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD--------PDDAEALRL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 297 LAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIyealggpqDPNVAK 376
Cdd:COG2956 116 LAEIYEQEGDWEKAIEVLERLLKL--------GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCAR 179
|
170 180
....*....|....*....|....*....
gi 564326480 377 TKNNLASAYLKQNKYQQAEELYKEILSQE 405
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQD 208
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
204-413 |
1.06e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 71.30 E-value: 1.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtl 283
Cdd:COG2956 73 PDRAEALLELAQDYLKAGLLDRAEELLEKLLEL--------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL----- 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 284 gpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFQDVERHYARALSiy 363
Cdd:COG2956 140 ---GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCARALLLLAELYLEQGDYEEAIAALERALE-- 206
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564326480 364 ealggpQDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQEALPAPLGA 413
Cdd:COG2956 207 ------QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA 250
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
290-331 |
2.32e-13 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 64.06 E-value: 2.32e-13
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 564326480 290 VAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPD 331
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
91-358 |
3.25e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 71.95 E-value: 3.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 91 LSAHVGVLEAEKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEKSHLQFLGQLRQYDPPEESQRPDSPPR 170
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 171 RDSLASLFpseeeEKKGPEAAGAAAAQQGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCRQALEdlerssghCHPDVAT 250
Cdd:COG3914 81 LELAALLL-----QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALA--------LNPDFAE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 251 MLNILALVYRDQNKYKEATELLHDALQIReqtlgPEHPAVaatLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHP 330
Cdd:COG3914 148 AYLNLGEALRRLGRLEEAIAALRRALELD-----PDNAEA---LNNLGNALQDLGRLEEAIAAYRRALEL--------DP 211
|
250 260
....*....|....*....|....*...
gi 564326480 331 DVAKQLNNLALLCQNQGKFQDVERHYAR 358
Cdd:COG3914 212 DNADAHSNLLFALRQACDWEVYDRFEEL 239
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
331-402 |
9.87e-12 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 60.48 E-value: 9.87e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564326480 331 DVAKQLNNLALLCQNQGKFQDVERHYARALSIYEALGGPQDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 402
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
205-363 |
2.11e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 61.75 E-value: 2.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 205 ARLRTLHNLVIQYASQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtlg 284
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL------ 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564326480 285 peHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEirekvLGADHPDVakqLNNLALLCQNQGKFQDVERHYARALSIY 363
Cdd:COG4783 68 --DPDEPEARLNLGLALLKAGDYDEALALLEKALK-----LDPEHPEA---YLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
254-402 |
4.48e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.59 E-value: 4.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 254 ILALVYRDQNKYKEATELLHDALQIreqtlgpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVA 333
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER--------DPDRA 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564326480 334 KQLNNLALLCQNQGKFQDVERHYARALSIyealggpqDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 402
Cdd:COG2956 77 EALLELAQDYLKAGLLDRAEELLEKLLEL--------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLL 137
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
204-396 |
2.43e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.79 E-value: 2.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEdlerssghCHPDVATMLNILALVYRDQNKYKEATELLHDALQIReqtl 283
Cdd:COG0457 73 PDDAEALNNLGLALQALGRYEEALEDYDKALE--------LDPDDAEALYNLGLALLELGRYDEAIEAYERALELD---- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 284 gpehPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREkvlgADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIY 363
Cdd:COG0457 141 ----PDDADALYNLGIALEKLGRYEEALELLEKLEAAAL----AALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212
|
170 180 190
....*....|....*....|....*....|...
gi 564326480 364 EALGGPQDPNVAKTKNNLASAYLKQNKYQQAEE 396
Cdd:COG0457 213 ILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
248-288 |
3.90e-10 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 54.82 E-value: 3.90e-10
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 564326480 248 VATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHP 288
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHP 41
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
206-281 |
4.00e-10 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 56.24 E-value: 4.00e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564326480 206 RLRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQ 281
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
255-406 |
8.61e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.12 E-value: 8.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 255 LALVYRDQNKYKEATELLHDALQireqtlgpEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAK 334
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALE--------LDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL--------DPDEPE 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564326480 335 QLNNLALLCQNQGKFQDVERHYARALSiyealggpQDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQEA 406
Cdd:COG4783 74 ARLNLGLALLKAGDYDEALALLEKALK--------LDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
300-406 |
3.94e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.64 E-value: 3.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 300 LYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFQDVERhYARALSIyealggpqDPNVAKTKN 379
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIA-LEKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|....*..
gi 564326480 380 NLASAYLKQNKYQQAEELYKEILSQEA 406
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALELDP 90
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
212-332 |
9.82e-09 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 58.01 E-value: 9.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 212 NLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHP-DVATMLN---ILALVYRDQNKYKEATELLHDALQIREQTLGPEH 287
Cdd:NF040586 694 NLAVLLRALGDPEEARELAEAALEGLRERLGPDHPyTLAAAVNlanDLAALGDLDAALGEEALERLRRLLGEDLRAGPDH 773
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 564326480 288 PAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDV 332
Cdd:NF040586 774 PDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGPDHPDT 818
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
212-403 |
1.38e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 55.31 E-value: 1.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 212 NLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIReqtlgpehPAVA 291
Cdd:COG4785 36 ALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 292 ATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAKQLNNLALLCQNQGKFQDVERHYARALSIYealggPQD 371
Cdd:COG4785 108 EAYNNRGLAYLLLGDYDAALEDFDRALELD--------PDYAYAYLNRGIALYYLGRYELAIADLEKALELD-----PND 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564326480 372 P-------------NVAKTKNNL----ASAYLKQNKYQQAEELYKEILS 403
Cdd:COG4785 175 PeralwlylaerklDPEKALALLledwATAYLLQGDTEEARELFKLALA 223
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
249-407 |
1.46e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.81 E-value: 1.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 249 ATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgad 328
Cdd:COG5010 12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL-------- 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564326480 329 HPDVAKQLNNLALLCQNQGKFQDVERHYARALSIyealggpqDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQEAL 407
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
258-366 |
1.57e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.09 E-value: 1.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 258 VYRDQNKYKEATELLHDALQIreqtlgpeHPAVAATLNNLAVLYGKRGRYREAEPLcQRALEIrekvlgadHPDVAKQLN 337
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|....*....
gi 564326480 338 NLALLCQNQGKFQDVERHYARALSIYEAL 366
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALELDPSA 92
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
217-325 |
1.79e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.09 E-value: 1.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 217 YASQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELlHDALQIreqtlgpeHPAVAATLNN 296
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALLN 64
|
90 100
....*....|....*....|....*....
gi 564326480 297 LAVLYGKRGRYREAEPLCQRALEIREKVL 325
Cdd:COG3063 65 LAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
286-404 |
4.57e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.93 E-value: 4.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 286 EHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAKQLNNLALLCQNQGKFQDVERHYARALSIyea 365
Cdd:COG4235 12 ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALAL--- 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 564326480 366 lggpqDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQ 404
Cdd:COG4235 81 -----DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
289-405 |
2.31e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.19 E-value: 2.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 289 AVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIyealgg 368
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL------ 67
|
90 100 110
....*....|....*....|....*....|....*..
gi 564326480 369 pqDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQE 405
Cdd:COG4783 68 --DPDEPEARLNLGLALLKAGDYDEALALLEKALKLD 102
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
245-402 |
5.59e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.39 E-value: 5.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 245 HPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtlgpeHPAVAATLNNLAVLYGKRGRYReAEPLCQRALEIRekv 324
Cdd:TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYLELKDPR-ALEYAERALKLA--- 833
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564326480 325 lgadhPDVAKQLNNLALLCQNQGKFQDVERHYARALSIyealggpqDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 402
Cdd:TIGR02917 834 -----PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALALLATGRKAEARKELDKLL 898
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
255-437 |
6.41e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 50.30 E-value: 6.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 255 LALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAK 334
Cdd:COG4785 37 LAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 335 QLNNLALLCQNQGKFQDVERHYARALSIyealggpqDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQEALPAPLGAP 414
Cdd:COG4785 109 AYNNRGLAYLLLGDYDAALEDFDRALEL--------DPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALW 180
|
170 180
....*....|....*....|...
gi 564326480 415 QGGTAGEAQQQVSRLCLRSFWVW 437
Cdd:COG4785 181 LYLAERKLDPEKALALLLEDWAT 203
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
204-362 |
8.69e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.80 E-value: 8.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtl 283
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL----- 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564326480 284 gpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFQDVERHYARALSI 362
Cdd:COG5010 84 ---DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
303-429 |
1.68e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.91 E-value: 1.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 303 KRGRYREAEPLCQRALEirekvLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIYealggPQDPNVAKTKNNLA 382
Cdd:COG1729 5 KAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY-----PDSPKAPDALLKLG 74
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 564326480 383 SAYLKQNKYQQAEELYKEILSQealpaplgAPQGGTAGEAQQQVSRL 429
Cdd:COG1729 75 LSYLELGDYDKARATLEELIKK--------YPDSEAAKEARARLARL 113
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
255-402 |
2.34e-06 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 48.87 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 255 LALVYRDQNKYKEATELLHDALQIReqtlgpehPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAK 334
Cdd:TIGR02521 37 LALGYLEQGDLEVAKENLDKALEHD--------PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--------NPNNGD 100
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564326480 335 QLNNL-ALLCQnQGKFQDVERHYARALSiyealgGPQDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 402
Cdd:TIGR02521 101 VLNNYgTFLCQ-QGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRAL 162
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
204-320 |
8.73e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.57 E-value: 8.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQireqtL 283
Cdd:COG4783 35 PDNPEAFALLGEILLQLGDLDEAIVLLHEALEL--------DPDEPEARLNLGLALLKAGDYDEALALLEKALK-----L 101
|
90 100 110
....*....|....*....|....*....|....*..
gi 564326480 284 GPEHPAVaatLNNLAVLYGKRGRYREAEPLCQRALEI 320
Cdd:COG4783 102 DPEHPEA---YLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
204-320 |
1.14e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDLerssghchPDVATMLNILALVYRDQNKYKEATELLHDALQireqtL 283
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALA-----L 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 564326480 284 GPEHPAVaatLNNLAVLYGKRGRYREAEPLCQRALEI 320
Cdd:COG4235 81 DPDNPEA---LYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
291-323 |
7.24e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 39.71 E-value: 7.24e-05
10 20 30
....*....|....*....|....*....|...
gi 564326480 291 AATLNNLAVLYGKRGRYREAEPLCQRALEIREK 323
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
204-321 |
9.83e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 44.33 E-value: 9.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQireqtl 283
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQ--------DPDYLPALPRLAELYEKLGDPEEALELLRKALE------ 240
|
90 100 110
....*....|....*....|....*....|....*...
gi 564326480 284 gpEHPAVAAtLNNLAVLYGKRGRYREAEPLCQRALEIR 321
Cdd:COG2956 241 --LDPSDDL-LLALADLLERKEGLEAALALLERQLRRH 275
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
21-148 |
1.09e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 21 EELVRQTRQVVQGLEALRAEHHSLAGHLAEAlagpgpVAGVELLEEKQQVVNHSLEAIELGLGEAQ-VLLALSAHVGVLE 99
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAELEEL------EAELAELEAELEELRLELEELELELEEAQaEEYELLAELARLE 301
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 564326480 100 AEKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEKSHLQ 148
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE 350
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
21-148 |
1.10e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 21 EELVRQTRQVVQGLEALRAEHHSLAGHLAEALAGpgpvagVELLEEKQQVVNHSLEAIElglgeaQVLLALSAHVGVLEA 100
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEK------LEELRLEVSELEEEIEELQ------KELYALANEISRLEQ 302
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 564326480 101 EKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEKSHLQ 148
Cdd:TIGR02168 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
293-328 |
1.93e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 38.68 E-value: 1.93e-04
10 20 30
....*....|....*....|....*....|....*.
gi 564326480 293 TLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGAD 328
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
315-405 |
2.00e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.53 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 315 QRALEIREKVlgADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIyealggpqDPNVAKTKNNLASAYLKQNKYQQA 394
Cdd:COG4235 1 EAIARLRQAL--AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL--------DPDNADALLDLAEALLAAGDTEEA 70
|
90
....*....|.
gi 564326480 395 EELYKEILSQE 405
Cdd:COG4235 71 EELLERALALD 81
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
291-323 |
3.10e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.20 E-value: 3.10e-04
10 20 30
....*....|....*....|....*....|...
gi 564326480 291 AATLNNLAVLYGKRGRYREAEPLCQRALEIREK 323
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
207-247 |
4.39e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 37.87 E-value: 4.39e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 564326480 207 LRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPD 247
Cdd:pfam13374 2 ASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
289-406 |
4.43e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 42.02 E-value: 4.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 289 AVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFQDVERHYARALSiyealgg 368
Cdd:COG2956 6 AAALGWYFKGLNYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLE------- 70
|
90 100 110
....*....|....*....|....*....|....*...
gi 564326480 369 pQDPNVAKTKNNLASAYLKQNKYQQAEELYKEILSQEA 406
Cdd:COG2956 71 -RDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDP 107
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
259-384 |
7.86e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 7.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 259 YRDQNKYKEATELLHDALQireqtLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEirekvLGADHPDVAKQLNN 338
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLK-----RYPDSPKAPDALLK 72
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 564326480 339 LALLCQNQGKFQDVERHYARALSIYealggPQDPNVAKTKNNLASA 384
Cdd:COG1729 73 LGLSYLELGDYDKARATLEELIKKY-----PDSEAAKEARARLARL 113
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
21-148 |
7.92e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 7.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 21 EELVRQTRQVVQGLEALRAEHHSLAghlaealagpgpvagvELLEEKQQVVNHSLEAIELGLGEAQVLLALSAHvgvLEA 100
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELE----------------LELEEAQAEEYELLAELARLEQDIARLEERRRE---LEE 316
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 564326480 101 EKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEKSHLQ 148
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
204-359 |
8.24e-04 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 41.53 E-value: 8.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQAlEDLERSSGHCHPDVATMLnILALVYRDQNKYKEATELLHDALQIREQTL 283
Cdd:pfam17874 37 LARGLATFVLGEAYLCLGDLDAALQAMREA-EALARRADSPHVTLWALL-QQGEILRAQGRLHQALETYQQALQLARDHG 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564326480 284 GPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVlgadHPDVAKQLNN-LALLCQNQGKFQDVERHYARA 359
Cdd:pfam17874 115 LQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQW----EPDAAVDAYVlLARIALAQGELEEALTLLRRA 187
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
332-373 |
8.91e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 37.10 E-value: 8.91e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 564326480 332 VAKQLNNLALLCQNQGKFQDVERHYARALSIYEALGGPQDPN 373
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
21-148 |
1.45e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 21 EELVRQTRQVVQgLEALRAEHHSLAGHLAEALAGPGpVAGVELLEEKQQVVNHSLEAIELGLGEAQVLLA-----LSAHV 95
Cdd:COG4913 302 AELARLEAELER-LEARLDALREELDELEAQIRGNG-GDRLEQLEREIERLERELEERERRRARLEALLAalglpLPASA 379
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 564326480 96 GVLEAEKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEKSHLQ 148
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
375-403 |
1.65e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.86 E-value: 1.65e-03
10 20
....*....|....*....|....*....
gi 564326480 375 AKTKNNLASAYLKQNKYQQAEELYKEILS 403
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALE 29
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
292-402 |
1.74e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 39.90 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 292 ATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIyealggpqD 371
Cdd:COG4785 32 AAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALEL--------D 103
|
90 100 110
....*....|....*....|....*....|.
gi 564326480 372 PNVAKTKNNLASAYLKQNKYQQAEELYKEIL 402
Cdd:COG4785 104 PDLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
217-404 |
1.94e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 40.84 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 217 YASQGRYEVAVPLCRQALEdLERSSGhchpdvATMLniLALVYRDQNKYKEATELLHDALQireqtlgpEHPAVAATLNN 296
Cdd:TIGR02917 713 YLRQKDYPAAIQAYRKALK-RAPSSQ------NAIK--LHRALLASGNTAEAVKTLEAWLK--------THPNDAVLRTA 775
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 297 LAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQnQGKFQDVERHYARALSIyealgGPQDPNVAK 376
Cdd:TIGR02917 776 LAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYL-ELKDPRALEYAERALKL-----APNIPAILD 841
|
170 180
....*....|....*....|....*...
gi 564326480 377 TknnLASAYLKQNKYQQAEELYKEILSQ 404
Cdd:TIGR02917 842 T---LGWLLVEKGEADRALPLLRKAVNI 866
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
212-292 |
2.41e-03 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 40.67 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 212 NLVIQYASQGRYEVAvpLCRQALEDLERS------SGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTLGP 285
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRRLlgedlrAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGP 813
|
....*..
gi 564326480 286 EHPAVAA 292
Cdd:NF040586 814 DHPDTVA 820
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
61-148 |
3.39e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 61 VELLEEKQQVVNHSLEAIELGLGEAQVLLALSAHVGVLEAEKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQL 140
Cdd:TIGR02169 919 LSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKL 998
|
....*...
gi 564326480 141 EEEKSHLQ 148
Cdd:TIGR02169 999 EEERKAIL 1006
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
375-405 |
4.38e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.73 E-value: 4.38e-03
10 20 30
....*....|....*....|....*....|.
gi 564326480 375 AKTKNNLASAYLKQNKYQQAEELYKEILSQE 405
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELD 31
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
98-164 |
5.70e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 39.55 E-value: 5.70e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564326480 98 LEAEKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEK----SHLQFLGQLRQYDPPEESQR 164
Cdd:PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQqeleAQLEQLQEKAAETSQERKQK 217
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
374-403 |
6.39e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 34.79 E-value: 6.39e-03
10 20 30
....*....|....*....|....*....|
gi 564326480 374 VAKTKNNLASAYLKQNKYQQAEELYKEILS 403
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALA 30
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
34-148 |
6.91e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.13 E-value: 6.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 34 LEALRAEHHSLAGHLAEALagpgpvAGVELLEEKQQVVNHSLEAIE--LGLGEAQV-LLALSAHVGVLEAEKQRLRAQAR 110
Cdd:COG4913 612 LAALEAELAELEEELAEAE------ERLEALEAELDALQERREALQrlAEYSWDEIdVASAEREIAELEAELERLDASSD 685
|
90 100 110
....*....|....*....|....*....|....*...
gi 564326480 111 RLAQentwLREELEETQRRLRASEEAVAQLEEEKSHLQ 148
Cdd:COG4913 686 DLAA----LEEQLEELEAELEELEEELDELKGEIGRLE 719
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
21-150 |
7.85e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.13 E-value: 7.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 21 EELVRQTRQVVQGLEALRAEHHSLAGHLAEALAGPGPVAGVELLEEKqqvvnhsLEAIELGLGEaqvLLALSAHVGVLEA 100
Cdd:COG4913 630 EERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAE-------LERLDASSDD---LAALEEQLEELEA 699
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 564326480 101 EKQRLRAQARRLAQENTWLREELEETQRRLRASEEAVAQLEEEKSHLQFL 150
Cdd:COG4913 700 ELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
204-283 |
7.97e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 35.92 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 204 PARLRTLHNLVIQYASQGRYEVAVPLcRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTL 283
Cdd:COG3063 23 PDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
216-404 |
9.49e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 38.45 E-value: 9.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 216 QYASQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQtlGPEHPAVAATLN 295
Cdd:pfam17874 89 ILRAQGRLHQALETYQQALQLARDHGLQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQ--WEPDAAVDAYVL 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564326480 296 nLAVLYGKRGRYREAEPLCQRALEI--REKVLGADHPDVAKQLNNLALLCQNQGKFQDVERHYARALSIYEALggpqdpn 373
Cdd:pfam17874 167 -LARIALAQGELEEALTLLRRAELLarQSFFHVDWLANAERVRVRLWLARGDLRAAVRWLRAAEPPSDADNHF------- 238
|
170 180 190
....*....|....*....|....*....|.
gi 564326480 374 VAKTKNNLASAYLKQNKYQQAEELYKEILSQ 404
Cdd:pfam17874 239 LERELRNLARVLLALGRFDDALSLLERLQNL 269
|
|
| |
