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Conserved domains on  [gi|564328143|ref|XP_006229154|]
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transmembrane protein 143 isoform X4 [Rattus norvegicus]

Protein Classification

TMEM143 family protein( domain architecture ID 38496)

TMEM143 family protein is a DUF3754 domain-containing protein; similar to Homo sapiens transmembrane protein 143 (TMEM143)

Gene Ontology:  GO:0016020

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3754 super family cl13951
Protein of unknown function (DUF3754); This domain family is found in bacteria, archaea and ...
 226-348 3.11e-07

Protein of unknown function (DUF3754); This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.


The actual alignment was detected with superfamily member pfam12576:

Pssm-ID: 403691  Cd Length: 136  Bit Score: 49.18  E-value: 3.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564328143  226 PVERRYF-KRVVLAARTKGGHLVLKSFKDTPLEGLEQLLPELKVRTPMMQRALLNLMLVVSGVVFFVNVGMVILSDLKMA 304
Cdd:pfam12576   9 FKSMAKFeKKKKKKPGIGPGPLYLKLFKNIPKADLEMIFPNKKVSMRLKDKLRLGVPAIGALGTVILKLLKFEVWRNKMS 88

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 564328143  305 TSLLLLLFAAFMGIRASKVFGQRRSAQA---LELAHMLYYRSTSNNS 348
Cdd:pfam12576  89 ILIAVLSAVGALGGFAFRQYTGYKNKKIryqKLVTKTLYFKTLASND 135
 
Name Accession Description Interval E-value
DUF3754 pfam12576
Protein of unknown function (DUF3754); This domain family is found in bacteria, archaea and ...
 226-348 3.11e-07

Protein of unknown function (DUF3754); This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.


Pssm-ID: 403691  Cd Length: 136  Bit Score: 49.18  E-value: 3.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564328143  226 PVERRYF-KRVVLAARTKGGHLVLKSFKDTPLEGLEQLLPELKVRTPMMQRALLNLMLVVSGVVFFVNVGMVILSDLKMA 304
Cdd:pfam12576   9 FKSMAKFeKKKKKKPGIGPGPLYLKLFKNIPKADLEMIFPNKKVSMRLKDKLRLGVPAIGALGTVILKLLKFEVWRNKMS 88

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 564328143  305 TSLLLLLFAAFMGIRASKVFGQRRSAQA---LELAHMLYYRSTSNNS 348
Cdd:pfam12576  89 ILIAVLSAVGALGGFAFRQYTGYKNKKIryqKLVTKTLYFKTLASND 135
 
Name Accession Description Interval E-value
DUF3754 pfam12576
Protein of unknown function (DUF3754); This domain family is found in bacteria, archaea and ...
 226-348 3.11e-07

Protein of unknown function (DUF3754); This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.


Pssm-ID: 403691  Cd Length: 136  Bit Score: 49.18  E-value: 3.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564328143  226 PVERRYF-KRVVLAARTKGGHLVLKSFKDTPLEGLEQLLPELKVRTPMMQRALLNLMLVVSGVVFFVNVGMVILSDLKMA 304
Cdd:pfam12576   9 FKSMAKFeKKKKKKPGIGPGPLYLKLFKNIPKADLEMIFPNKKVSMRLKDKLRLGVPAIGALGTVILKLLKFEVWRNKMS 88

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 564328143  305 TSLLLLLFAAFMGIRASKVFGQRRSAQA---LELAHMLYYRSTSNNS 348
Cdd:pfam12576  89 ILIAVLSAVGALGGFAFRQYTGYKNKKIryqKLVTKTLYFKTLASND 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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