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Conserved domains on  [gi|564350486|ref|XP_006238001|]
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ubiquitin carboxyl-terminal hydrolase 45 isoform X1 [Rattus norvegicus]

Protein Classification

zf-UBP and Peptidase_C19K domain-containing protein( domain architecture ID 10489803)

zf-UBP and Peptidase_C19K domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
586-810 1.51e-68

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 228.04  E-value: 1.51e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 586 VCFSEGKHTKLHSAqnaFQTLS-QSYVTTSKECSVQSCLYQFTSMELLMGNNKLLCEDCTEkkrkcqketssaerkaggv 664
Cdd:cd02667   82 MCESCGTVSLVYEP---FLDLSlPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK------------------- 139
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 665 ytnARKQLLISAVPAILILHLKRFHQAGL-SLRKVNRHVDFPLTLDLAPFCAATCKNISVGEKVLYGLYGIVEHSGSMRG 743
Cdd:cd02667  140 ---AKKQYLISKLPPVLVIHLKRFQQPRSaNLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRS 216
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564350486 744 GHYTAYVKVRVPSRKLSECITGRKTAPGlKEADSelgGHWVHVSDTYVQVVPESRALSAQAYLLFYE 810
Cdd:cd02667  217 GHYVAYVKVRPPQQRLSDLTKSKPAADE-AGPGS---GQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
192-388 1.41e-36

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member cd02667:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 279  Bit Score: 139.06  E-value: 1.41e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 192 GITNLGNTCFFNAVIQNLAQTYILFELMNEikedgtkfkislssapqleplvvelsspgpltsalflflhsmkeaekgpl 271
Cdd:cd02667    1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------------------- 30
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 272 SPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRTeetkriqasilkafnnpttktadeetrkkvkaygkegvkmnFI 351
Cdd:cd02667   31 TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLRT-----------------------------------------FI 69
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 564350486 352 DRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEE 388
Cdd:cd02667   70 DSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDE 106
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
62-132 1.45e-16

Zn-finger in ubiquitin-hydrolases and other protein;


:

Pssm-ID: 460464  Cd Length: 63  Bit Score: 74.60  E-value: 1.45e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564350486   62 CSECLKErrlcdgqpvlpSDVWLCLKCGFQGCGKNSESqHSLRHFKSSGaesHCVVISLSTWVIWCYECNE 132
Cdd:pfam02148   1 CSLCGNT-----------SNLWLCLTCGHVGCGRYQNS-HALEHYEETG---HPLAVNLSTLTVYCYPCDD 56
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
586-810 1.51e-68

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 228.04  E-value: 1.51e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 586 VCFSEGKHTKLHSAqnaFQTLS-QSYVTTSKECSVQSCLYQFTSMELLMGNNKLLCEDCTEkkrkcqketssaerkaggv 664
Cdd:cd02667   82 MCESCGTVSLVYEP---FLDLSlPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK------------------- 139
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 665 ytnARKQLLISAVPAILILHLKRFHQAGL-SLRKVNRHVDFPLTLDLAPFCAATCKNISVGEKVLYGLYGIVEHSGSMRG 743
Cdd:cd02667  140 ---AKKQYLISKLPPVLVIHLKRFQQPRSaNLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRS 216
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564350486 744 GHYTAYVKVRVPSRKLSECITGRKTAPGlKEADSelgGHWVHVSDTYVQVVPESRALSAQAYLLFYE 810
Cdd:cd02667  217 GHYVAYVKVRPPQQRLSDLTKSKPAADE-AGPGS---GQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
192-388 1.41e-36

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 139.06  E-value: 1.41e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 192 GITNLGNTCFFNAVIQNLAQTYILFELMNEikedgtkfkislssapqleplvvelsspgpltsalflflhsmkeaekgpl 271
Cdd:cd02667    1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------------------- 30
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 272 SPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRTeetkriqasilkafnnpttktadeetrkkvkaygkegvkmnFI 351
Cdd:cd02667   31 TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLRT-----------------------------------------FI 69
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 564350486 352 DRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEE 388
Cdd:cd02667   70 DSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDE 106
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
612-809 4.69e-29

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 118.31  E-value: 4.69e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486  612 TTSKECSVQSCLYQFTSMELLMGNNKLLCEDCTEKKrkcqketssaerkaggvytNARKQLLISAVPAILILHLKRFHQA 691
Cdd:pfam00443 157 AELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQ-------------------DAIKQLKISRLPPVLIIHLKRFSYN 217
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486  692 GLSLRKVNRHVDFPLTLDLAPFCAATcKNISVGEKVLYGLYGIVEHSGSMRGGHYTAYVKvrvpsrklsecitgrktapg 771
Cdd:pfam00443 218 RSTWEKLNTEVEFPLELDLSRYLAEE-LKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIK-------------------- 276
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 564350486  772 lkeadSELGGHWVHVSDTYVQVVPESRA-LSAQAYLLFY 809
Cdd:pfam00443 277 -----AYENNRWYKFDDEKVTEVDEETAvLSSSAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
192-811 6.17e-28

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 120.76  E-value: 6.17e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 192 GITNLGNTCFFNAVIQNLAQTYilfELMNEIKEDGTKFKISLSSapqlePLVVElsspGPLTSALFLFLHSMKEAEKGPL 271
Cdd:COG5560  267 GLRNLGNTCYMNSALQCLMHTW---ELRDYFLSDEYEESINEEN-----PLGMH----GSVASAYADLIKQLYDGNLHAF 334
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 272 SPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRtEETKRIQasILKAFNNPTTKTADEETRKKV-KAYGKEGVKMN- 349
Cdd:COG5560  335 TPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLH-EDLNRII--KKPYTSKPDLSPGDDVVVKKKaKECWWEHLKRNd 411
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 350 -FIDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEERV-SKPVLLGKMSKCRSLQETDQDHNKGTVTVENTHPPRA 427
Cdd:COG5560  412 sIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVwKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEY 491
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 428 AK-----------------KHSSPKDKTLLshdrKHLRKW-------PSEEERTVGTHPNSENS--EASPLAGILSNEAS 481
Cdd:COG5560  492 GKlgcfeikvmciyyggnyNMLEPADKVLL----QDIPQTdfvylyeTNDNGIEVPVVHLRIEKgyKSKRLFGDPFLQLN 567
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 482 LNespTEGSERDTSLESSVDADSEASepevAYKPSVLLRSSGDPGAHGEQHPhlplASELPHTKETHDCDEEMAEAMAEL 561
Cdd:COG5560  568 VL---IKASIYDKLVKEFEELLVLVE----MKKTDVDLVSEQVRLLREESSP----SSWLKLETEIDTKREEQVEEEGQM 636
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 562 HLSGTVTGNRDfHREKQPLNVPNNVCFSEGKHTKLHsaqnafqtlsqsyvttSKECSVQSCLYQFTSMELLMGNNKLLCE 641
Cdd:COG5560  637 NFNDAVVISCE-WEEKRYLSLFSYDPLWTIREIGAA----------------ERTITLQDCLNEFSKPEQLGLSDSWYCP 699
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 642 DCTEKKRkcqketssaerkaggvytnARKQLLISAVPAILILHLKRFHQAGLSLRKVNRHVDFPLT-LDLAPFCAATckn 720
Cdd:COG5560  700 GCKEFRQ-------------------ASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDdLDLSGVEYMV--- 757
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 721 isVGEKVLYGLYGIVEHSGSMRGGHYTAYVKvrvpsrklsecitgrktapglKEADselgGHWVHVSDTYVQVVPESRAL 800
Cdd:COG5560  758 --DDPRLIYDLYAVDNHYGGLSGGHYTAYAR---------------------NFAN----NGWYLFDDSRITEVDPEDSV 810
                        650
                 ....*....|.
gi 564350486 801 SAQAYLLFYER 811
Cdd:COG5560  811 TSSAYVLFYRR 821
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
192-433 1.44e-21

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 96.36  E-value: 1.44e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486  192 GITNLGNTCFFNAVIQNLAQTYILFELMNEIKEDGTKFKISLSSApqleplvvelsspgpLTSALFLFLHSMKEAEKG-P 270
Cdd:pfam00443   2 GLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDIN---------------LLCALRDLFKALQKNSKSsS 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486  271 LSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRTEEtkriqasilkafnNPTTKTADEetrkkvkaygkegvkmNF 350
Cdd:pfam00443  67 VSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDL-------------NGNHSTENE----------------SL 117
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486  351 IDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIE-ERVSKPVLLGKMSKCRSLQETDQDHNKgtVTVENTHPPRAAK 429
Cdd:pfam00443 118 ITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGdSAELKTASLQICFLQFSKLEELDDEEK--YYCDKCGCKQDAI 195

                  ....
gi 564350486  430 KHSS 433
Cdd:pfam00443 196 KQLK 199
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
62-132 1.45e-16

Zn-finger in ubiquitin-hydrolases and other protein;


Pssm-ID: 460464  Cd Length: 63  Bit Score: 74.60  E-value: 1.45e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564350486   62 CSECLKErrlcdgqpvlpSDVWLCLKCGFQGCGKNSESqHSLRHFKSSGaesHCVVISLSTWVIWCYECNE 132
Cdd:pfam02148   1 CSLCGNT-----------SNLWLCLTCGHVGCGRYQNS-HALEHYEETG---HPLAVNLSTLTVYCYPCDD 56
ZnF_UBP smart00290
Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;
62-122 3.51e-07

Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;


Pssm-ID: 197632  Cd Length: 50  Bit Score: 47.36  E-value: 3.51e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564350486    62 CSECLkerrlcdgqpvLPSDVWLCLKCGFQGCGkNSESQHSLRHFKSSGaesHCVVISLST 122
Cdd:smart00290   2 CSVCG-----------TIENLWLCLTCGQVGCG-RYQNGHALEHFEETG---HPLVVKLGT 47
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
586-810 1.51e-68

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 228.04  E-value: 1.51e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 586 VCFSEGKHTKLHSAqnaFQTLS-QSYVTTSKECSVQSCLYQFTSMELLMGNNKLLCEDCTEkkrkcqketssaerkaggv 664
Cdd:cd02667   82 MCESCGTVSLVYEP---FLDLSlPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK------------------- 139
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 665 ytnARKQLLISAVPAILILHLKRFHQAGL-SLRKVNRHVDFPLTLDLAPFCAATCKNISVGEKVLYGLYGIVEHSGSMRG 743
Cdd:cd02667  140 ---AKKQYLISKLPPVLVIHLKRFQQPRSaNLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRS 216
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564350486 744 GHYTAYVKVRVPSRKLSECITGRKTAPGlKEADSelgGHWVHVSDTYVQVVPESRALSAQAYLLFYE 810
Cdd:cd02667  217 GHYVAYVKVRPPQQRLSDLTKSKPAADE-AGPGS---GQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
192-388 1.41e-36

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 139.06  E-value: 1.41e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 192 GITNLGNTCFFNAVIQNLAQTYILFELMNEikedgtkfkislssapqleplvvelsspgpltsalflflhsmkeaekgpl 271
Cdd:cd02667    1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------------------- 30
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 272 SPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRTeetkriqasilkafnnpttktadeetrkkvkaygkegvkmnFI 351
Cdd:cd02667   31 TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLRT-----------------------------------------FI 69
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 564350486 352 DRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEE 388
Cdd:cd02667   70 DSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDE 106
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
611-810 6.68e-33

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 127.98  E-value: 6.68e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 611 VTTSKECSVQSCLYQFTSMELLMGNNKLLCEdctekkrkcqketssaerkaGGVYTNARKQLLISAVPAILILHLKRFHQ 690
Cdd:cd02257   93 VKGLPQVSLEDCLEKFFKEEILEGDNCYKCE--------------------KKKKQEATKRLKIKKLPPVLIIHLKRFSF 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 691 AG-LSLRKVNRHVDFPLTLDLAPFCAATCKNISVGEK-VLYGLYGIVEHSG-SMRGGHYTAYVKVRVPsrklsecitgrk 767
Cdd:cd02257  153 NEdGTKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGsYKYELVAVVVHSGtSADSGHYVAYVKDPSD------------ 220
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 564350486 768 tapglkeadselgGHWVHVSDTYVQVVPESRAL-----SAQAYLLFYE 810
Cdd:cd02257  221 -------------GKWYKFNDDKVTEVSEEEVLefgslSSSAYILFYE 255
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
618-809 2.12e-30

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 122.00  E-value: 2.12e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 618 SVQSCLYQFTSMELLMGNNKLLCEDCTEKkrkcqketssaerkaggvyTNARKQLLISAVPAILILHLKRFhqAGLSLRK 697
Cdd:cd02661  163 SLEDALEQFTKPEQLDGENKYKCERCKKK-------------------VKASKQLTIHRAPNVLTIHLKRF--SNFRGGK 221
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 698 VNRHVDFPLTLDLAPFCAAtckniSVGEKVLYGLYGIVEHSG-SMRGGHYTAYVkvrvpsrklsecitgrKTAPGLkead 776
Cdd:cd02661  222 INKQISFPETLDLSPYMSQ-----PNDGPLKYKLYAVLVHSGfSPHSGHYYCYV----------------KSSNGK---- 276
                        170       180       190
                 ....*....|....*....|....*....|...
gi 564350486 777 selgghWVHVSDTYVQVVPESRALSAQAYLLFY 809
Cdd:cd02661  277 ------WYNMDDSKVSPVSIETVLSQKAYILFY 303
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
615-810 5.14e-30

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 118.54  E-value: 5.14e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 615 KECSVQSCLYQFTSMELLMGNNKLLCEDCtEKKRKcqketssaerkaggvytnARKQLLISAVPAILILHLKRFHQAGLS 694
Cdd:cd02674   82 PKVTLEDCLRLFTKEETLDGDNAWKCPKC-KKKRK------------------ATKKLTISRLPKVLIIHLKRFSFSRGS 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 695 LRKVNRHVDFPLT-LDLAPFCAATCKNISvgekVLYGLYGIVEHSGSMRGGHYTAYVKVRVPSRklsecitgrktapglk 773
Cdd:cd02674  143 TRKLTTPVTFPLNdLDLTPYVDTRSFTGP----FKYDLYAVVNHYGSLNGGHYTAYCKNNETND---------------- 202
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 564350486 774 eadselgghWVHVSDTYVQVVPESRALSAQAYLLFYE 810
Cdd:cd02674  203 ---------WYKFDDSRVTKVSESSVVSSSAYILFYE 230
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
612-809 4.69e-29

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 118.31  E-value: 4.69e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486  612 TTSKECSVQSCLYQFTSMELLMGNNKLLCEDCTEKKrkcqketssaerkaggvytNARKQLLISAVPAILILHLKRFHQA 691
Cdd:pfam00443 157 AELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQ-------------------DAIKQLKISRLPPVLIIHLKRFSYN 217
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486  692 GLSLRKVNRHVDFPLTLDLAPFCAATcKNISVGEKVLYGLYGIVEHSGSMRGGHYTAYVKvrvpsrklsecitgrktapg 771
Cdd:pfam00443 218 RSTWEKLNTEVEFPLELDLSRYLAEE-LKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIK-------------------- 276
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 564350486  772 lkeadSELGGHWVHVSDTYVQVVPESRA-LSAQAYLLFY 809
Cdd:pfam00443 277 -----AYENNRWYKFDDEKVTEVDEETAvLSSSAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
192-811 6.17e-28

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 120.76  E-value: 6.17e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 192 GITNLGNTCFFNAVIQNLAQTYilfELMNEIKEDGTKFKISLSSapqlePLVVElsspGPLTSALFLFLHSMKEAEKGPL 271
Cdd:COG5560  267 GLRNLGNTCYMNSALQCLMHTW---ELRDYFLSDEYEESINEEN-----PLGMH----GSVASAYADLIKQLYDGNLHAF 334
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 272 SPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRtEETKRIQasILKAFNNPTTKTADEETRKKV-KAYGKEGVKMN- 349
Cdd:COG5560  335 TPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLH-EDLNRII--KKPYTSKPDLSPGDDVVVKKKaKECWWEHLKRNd 411
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 350 -FIDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEERV-SKPVLLGKMSKCRSLQETDQDHNKGTVTVENTHPPRA 427
Cdd:COG5560  412 sIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVwKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEY 491
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 428 AK-----------------KHSSPKDKTLLshdrKHLRKW-------PSEEERTVGTHPNSENS--EASPLAGILSNEAS 481
Cdd:COG5560  492 GKlgcfeikvmciyyggnyNMLEPADKVLL----QDIPQTdfvylyeTNDNGIEVPVVHLRIEKgyKSKRLFGDPFLQLN 567
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 482 LNespTEGSERDTSLESSVDADSEASepevAYKPSVLLRSSGDPGAHGEQHPhlplASELPHTKETHDCDEEMAEAMAEL 561
Cdd:COG5560  568 VL---IKASIYDKLVKEFEELLVLVE----MKKTDVDLVSEQVRLLREESSP----SSWLKLETEIDTKREEQVEEEGQM 636
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 562 HLSGTVTGNRDfHREKQPLNVPNNVCFSEGKHTKLHsaqnafqtlsqsyvttSKECSVQSCLYQFTSMELLMGNNKLLCE 641
Cdd:COG5560  637 NFNDAVVISCE-WEEKRYLSLFSYDPLWTIREIGAA----------------ERTITLQDCLNEFSKPEQLGLSDSWYCP 699
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 642 DCTEKKRkcqketssaerkaggvytnARKQLLISAVPAILILHLKRFHQAGLSLRKVNRHVDFPLT-LDLAPFCAATckn 720
Cdd:COG5560  700 GCKEFRQ-------------------ASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDdLDLSGVEYMV--- 757
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 721 isVGEKVLYGLYGIVEHSGSMRGGHYTAYVKvrvpsrklsecitgrktapglKEADselgGHWVHVSDTYVQVVPESRAL 800
Cdd:COG5560  758 --DDPRLIYDLYAVDNHYGGLSGGHYTAYAR---------------------NFAN----NGWYLFDDSRITEVDPEDSV 810
                        650
                 ....*....|.
gi 564350486 801 SAQAYLLFYER 811
Cdd:COG5560  811 TSSAYVLFYRR 821
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
620-809 6.59e-26

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 109.38  E-value: 6.59e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 620 QSCLYQFTSMELLmGNNKLLCEDCtekkrkcqketssaerkagGVYTNARKQLLISAVPAILILHLKRF-HQAGLSLRKV 698
Cdd:cd02660  179 SDCLDRFTRPEKL-GDFAYKCSGC-------------------GSTQEATKQLSIKKLPPVLCFQLKRFeHSLNKTSRKI 238
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 699 NRHVDFPLTLDLAPFCAATCKNISVGE----KVLYGLYGIVEHSGSMRGGHYTAYVKVRvpsrklsecitgrktapglke 774
Cdd:cd02660  239 DTYVQFPLELNMTPYTSSSIGDTQDSNsldpDYTYDLFAVVVHKGTLDTGHYTAYCRQG--------------------- 297
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 564350486 775 adselGGHWVHVSDTYVQVVPESRALSAQAYLLFY 809
Cdd:cd02660  298 -----DGQWFKFDDAMITRVSEEEVLKSQAYLLFY 327
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
618-812 5.62e-23

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 100.79  E-value: 5.62e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 618 SVQSCLYQFTSMELLMGNNKLLCEDCTEKKRkcqketssaerkaggvytnARKQLLISAVPAILILHLKRFHQAGLSLR- 696
Cdd:cd02659  152 NLEESLDAYVQGETLEGDNKYFCEKCGKKVD-------------------AEKGVCFKKLPPVLTLQLKRFEFDFETMMr 212
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 697 -KVNRHVDFPLTLDLAPFCAATCKNISVGEKV------LYGLYGIVEHSGSMRGGHYTAYVKVRVPSR-------KLSEC 762
Cdd:cd02659  213 iKINDRFEFPLELDMEPYTEKGLAKKEGDSEKkdsesyIYELHGVLVHSGDAHGGHYYSYIKDRDDGKwykfnddVVTPF 292
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 564350486 763 itgrktapGLKEADSE-LGGhwvHVSDTYVQVVPESRALSAQAYLLFYERI 812
Cdd:cd02659  293 --------DPNDAEEEcFGG---EETQKTYDSGPRAFKRTTNAYMLFYERK 332
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
192-433 1.44e-21

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 96.36  E-value: 1.44e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486  192 GITNLGNTCFFNAVIQNLAQTYILFELMNEIKEDGTKFKISLSSApqleplvvelsspgpLTSALFLFLHSMKEAEKG-P 270
Cdd:pfam00443   2 GLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDIN---------------LLCALRDLFKALQKNSKSsS 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486  271 LSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRTEEtkriqasilkafnNPTTKTADEetrkkvkaygkegvkmNF 350
Cdd:pfam00443  67 VSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDL-------------NGNHSTENE----------------SL 117
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486  351 IDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIE-ERVSKPVLLGKMSKCRSLQETDQDHNKgtVTVENTHPPRAAK 429
Cdd:pfam00443 118 ITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGdSAELKTASLQICFLQFSKLEELDDEEK--YYCDKCGCKQDAI 195

                  ....
gi 564350486  430 KHSS 433
Cdd:pfam00443 196 KQLK 199
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
597-810 1.32e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 88.96  E-value: 1.32e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 597 HSAQNAFQ----TLSQSY-----VTTSKECSVQSC------LYQFTSMELLMGNNKLLCEDCTEKKrkCQKETSSAERKA 661
Cdd:cd02662   35 QDAHELFQvlleTLEQLLkfpfdGLLASRIVCLQCgesskvRYESFTMLSLPVPNQSSGSGTTLEH--CLDDFLSTEIID 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 662 GgvYTNARKQLLISAVPAILILHLKR--FHQAGLSLRKvNRHVDFPLTLDlapfcaatcknisvgeKVLYGLYGIVEHSG 739
Cdd:cd02662  113 D--YKCDRCQTVIVRLPQILCIHLSRsvFDGRGTSTKN-SCKVSFPERLP----------------KVLYRLRAVVVHYG 173
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564350486 740 SMRGGHYTAYVKVRVPSRKLSECITGRktapgLKEADSELGGHWVHVSDTYVQVVPESRAL-SAQAYLLFYE 810
Cdd:cd02662  174 SHSSGHYVCYRRKPLFSKDKEPGSFVR-----MREGPSSTSHPWWRISDTTVKEVSESEVLeQKSAYMLFYE 240
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
62-132 1.45e-16

Zn-finger in ubiquitin-hydrolases and other protein;


Pssm-ID: 460464  Cd Length: 63  Bit Score: 74.60  E-value: 1.45e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564350486   62 CSECLKErrlcdgqpvlpSDVWLCLKCGFQGCGKNSESqHSLRHFKSSGaesHCVVISLSTWVIWCYECNE 132
Cdd:pfam02148   1 CSLCGNT-----------SNLWLCLTCGHVGCGRYQNS-HALEHYEETG---HPLAVNLSTLTVYCYPCDD 56
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
615-810 9.06e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 75.81  E-value: 9.06e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 615 KECSVQSCLYQFTSMELLMGNNKLLCEDCTEKKrkcqketssaerkaggvytNARKQLLISAVPAILILHLKRFHQAGls 694
Cdd:cd02663  145 QNTSITSCLRQFSATETLCGRNKFYCDECCSLQ-------------------EAEKRMKIKKLPKILALHLKRFKYDE-- 203
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 695 lrKVNRH------VDFPLTLDLapfcaatCKNISVGEKV--LYGLYGIVEHSGS--MRGgHYTAYVKVrvpsrklsecit 764
Cdd:cd02663  204 --QLNRYiklfyrVVFPLELRL-------FNTTDDAENPdrLYELVAVVVHIGGgpNHG-HYVSIVKS------------ 261
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 564350486 765 grktapglkeadselGGHWVHVSDTYVQVVPES--------RALSAQAYLLFYE 810
Cdd:cd02663  262 ---------------HGGWLLFDDETVEKIDENaveeffgdSPNQATAYVLFYQ 300
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
674-812 1.41e-14

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 74.84  E-value: 1.41e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 674 ISAVPAILILHLKRFHQAGlSLRKVNRHVDFPLTLDLAPfcaatCKNISVGEKVLYGLYGIVEHSGSMRGGHYTAYVKVr 753
Cdd:COG5533  176 FVKLPKILTIQLKRFANLG-GNQKIDTEVDEKFELPVKH-----DQILNIVKETYYDLVGFVLHQGSLEGGHYIAYVKK- 248
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564350486 754 vpsrklsecitgrktapglkeadselGGHWVHVSDTYVQVVPESRAL---SAQAYLLFYERI 812
Cdd:COG5533  249 --------------------------GGKWEKANDSDVTPVSEEEAInekAKNAYLYFYERI 284
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
625-751 1.78e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 72.23  E-value: 1.78e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 625 QFTSMELLMGNNKLLCEDCTEkkrkcqketssaerkaggvYTNARKQLLISAVPAILILHLKRFHQAGLS------LRKV 698
Cdd:cd02671  188 QFASVERIVGEDKYFCENCHH-------------------YTEAERSLLFDKLPEVITIHLKCFAANGSEfdcyggLSKV 248
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 564350486 699 NRHVDFPLTLdlapfcaaTCKNISVGEKV-LYGLYGIVEHSG-SMRGGHYTAYVK 751
Cdd:cd02671  249 NTPLLTPLKL--------SLEEWSTKPKNdVYRLFAVVMHSGaTISSGHYTAYVR 295
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
191-393 1.97e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 72.41  E-value: 1.97e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 191 KGITNLGNTCFFNAVIQNLAQTYILFE-LMNEIKEDGTKFKISLSSAP-QLEPLVVELSSPGpltsalflflhsmkeaEK 268
Cdd:cd02660    1 RGLINLGATCFMNVILQALLHNPLLRNyFLSDRHSCTCLSCSPNSCLScAMDEIFQEFYYSG----------------DR 64
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 269 GPLSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRTEETKRiqasilkafnnpttktadeetrkkVKAYGKEGVKM 348
Cdd:cd02660   65 SPYGPINLLYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGD------------------------KNEANDESHCN 120
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 564350486 349 NFIDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEERVSKP 393
Cdd:cd02660  121 CIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTPSW 165
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
617-810 3.83e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 71.37  E-value: 3.83e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 617 CSVQSCLYQFTSMELLMGNNKLLCEDCtekKRKCQKETSSAerkaggvytnarkqllISAVPAILILHLKRFH--QAGLS 694
Cdd:cd02664  134 PSVQDLLNYFLSPEKLTGDNQYYCEKC---ASLQDAEKEMK----------------VTGAPEYLILTLLRFSydQKTHV 194
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 695 LRKVNRHVDFPLTLDLaPFCAATCKNISVGEK---------------VLYGLYGIVEHSG-SMRGGHYTAYVKVRVPSRK 758
Cdd:cd02664  195 REKIMDNVSINEVLSL-PVRVESKSSESPLEKkeeesgddgelvtrqVHYRLYAVVVHSGySSESGHYFTYARDQTDADS 273
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 564350486 759 lseciTGRKTAPGLKEADSELGGHWVHVSDTYV-QVVPE------SRALSAQAYLLFYE 810
Cdd:cd02664  274 -----TGQECPEPKDAEENDESKNWYLFNDSRVtFSSFEsvqnvtSRFPKDTPYILFYE 327
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
618-751 6.62e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 70.53  E-value: 6.62e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 618 SVQSCLYQFTSMELLMGNNKLLCEDCTEKkrkcqketssaerkaggvyTNARKQLLISAVPAILILHLKR--FHQAGLSL 695
Cdd:cd02668  157 TLEECIDEFLKEEQLTGDNQYFCESCNSK-------------------TDATRRIRLTTLPPTLNFQLLRfvFDRKTGAK 217
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 564350486 696 RKVNRHVDFPLTLDLAPFCAATCKNISVgekvlYGLYGIVEHSG-SMRGGHYTAYVK 751
Cdd:cd02668  218 KKLNASISFPEILDMGEYLAESDEGSYV-----YELSGVLIHQGvSAYSGHYIAHIK 269
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
618-811 5.72e-12

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 69.51  E-value: 5.72e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486  618 SVQSCLYQFTSMELLMGNNKLLCEDCTekkrkcqketssaerkaggvYTNARKQLLISAVPAILILHLKRFHQAGLS--L 695
Cdd:COG5077   339 NLQESFRRYIQVETLDGDNRYNAEKHG--------------------LQDAKKGVIFESLPPVLHLQLKRFEYDFERdmM 398
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486  696 RKVNRHVDFPLTLDLAPFCAATCKNiSVGEKVLYGLYGIVEHSGSMRGGHYTAYVKVRVPSRKLSECITgRKTAPGLKEA 775
Cdd:COG5077   399 VKINDRYEFPLEIDLLPFLDRDADK-SENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDT-RVTRATEKEV 476
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 564350486  776 DSE-LGGHWVHvSDTYVQVVPESRALSaqAYLLFYER 811
Cdd:COG5077   477 LEEnFGGDHPY-KDKIRDHSGIKRFMS--AYMLVYLR 510
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
188-392 9.42e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 67.23  E-value: 9.42e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 188 PSVKGITNLGNTCFFNAVIQNLaqtyilfELMNEIKEdGTKFKISL-SSAPQLEplvvelsspgpltsALFLFLHSMKEA 266
Cdd:cd02671   22 LPFVGLNNLGNTCYLNSVLQVL-------YFCPGFKH-GLKHLVSLiSSVEQLQ--------------SSFLLNPEKYND 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 267 EKGPLSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRteetkriqasilkafnnpttktadeetrkkvkaygkegv 346
Cdd:cd02671   80 ELANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQ--------------------------------------- 120
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 564350486 347 kmNFIDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEERVSK 392
Cdd:cd02671  121 --ELVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSK 164
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
645-810 3.65e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 65.04  E-value: 3.65e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 645 EKKRKCQKETSSAERKAGGVYTnarKQLLISAVPAILILHLKRFHQAGLSLR--KVNRHVDFPLTLDLAPFCAATCknis 722
Cdd:cd02657  167 KKGLEEEIEKHSPTLGRDAIYT---KTSRISRLPKYLTVQFVRFFWKRDIQKkaKILRKVKFPFELDLYELCTPSG---- 239
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 723 vgekvLYGLYGIVEHSG-SMRGGHYTAYVKvrvpsrklsecitgrktapglkeadSELGGHWVHVSDTYVQVVPESRALS 801
Cdd:cd02657  240 -----YYELVAVITHQGrSADSGHYVAWVR-------------------------RKNDGKWIKFDDDKVSEVTEEDILK 289
                        170
                 ....*....|....*.
gi 564350486 802 AQ-------AYLLFYE 810
Cdd:cd02657  290 LSgggdwhiAYILLYK 305
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
192-407 3.54e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 61.94  E-value: 3.54e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 192 GITNLGNTCFFNAVIQNLAQTYILfelmneikedgtkfkislssapqleplvvelsspgpltSALFLFLHSMKEAEK--G 269
Cdd:cd02663    1 GLENFGNTCYCNSVLQALYFENLL--------------------------------------TCLKDLFESISEQKKrtG 42
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 270 PLSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLdavrteetkriqasilkafnNPTTKTADEEtRKKVKAYGKEGVKM- 348
Cdd:cd02663   43 VISPKKFITRLKRENELFDNYMHQDAHEFLNFLL--------------------NEIAEILDAE-RKAEKANRKLNNNNn 101
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564350486 349 -----NFIDRIFIGELTSTVMCEECANISTMKDPFIDISLPiIEERVSKPVLLGKMS--------------KCRSLQE 407
Cdd:cd02663  102 aepqpTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSID-VEQNTSITSCLRQFSatetlcgrnkfycdECCSLQE 178
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
192-385 5.82e-10

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 60.57  E-value: 5.82e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 192 GITNLGNTCFFNAVIQNLAqtyilfelmneikedgtkfkislssapqleplvvelsspgpltsalflflhsmkeaekgpl 271
Cdd:cd02257    1 GLNNLGNTCYLNSVLQALF------------------------------------------------------------- 19
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 272 spkvlfnqlcqkaprfkgFQQQDSQELLHHLLDAVRTEETKRIQASILKAFNNpttktadeetrkkvkaygkegvkmNFI 351
Cdd:cd02257   20 ------------------SEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLK------------------------SLI 57
                        170       180       190
                 ....*....|....*....|....*....|....
gi 564350486 352 DRIFIGELTSTVMCEECANISTMKDPFIDISLPI 385
Cdd:cd02257   58 HDLFGGKLESTIVCLECGHESVSTEPELFLSLPL 91
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
192-406 8.72e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 60.97  E-value: 8.72e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 192 GITNLGNTCFFNAVIQNLAQT-YILFELMNEIKEDGtkfkislssAPQLEPLVVELSspgpltsaLFLFLHSMKEAEKGP 270
Cdd:cd02664    1 GLINLGNTCYMNSVLQALFMAkDFRRQVLSLNLPRL---------GDSQSVMKKLQL--------LQAHLMHTQRRAEAP 63
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 271 lsPKVLFNQlcQKAPRFKGFQQQDSQELLHHLLDAVRTeetkriqasilkafnnpttktadeetrkkvkaygkegvkmnF 350
Cdd:cd02664   64 --PDYFLEA--SRPPWFTPGSQQDCSEYLRYLLDRLHT-----------------------------------------L 98
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564350486 351 IDRIFIGELTSTVMCEECANISTMKD--PFIDISLP----IIEERVSKPVLLGK----MSKCRSLQ 406
Cdd:cd02664   99 IEKMFGGKLSTTIRCLNCNSTSARTErfRDLDLSFPsvqdLLNYFLSPEKLTGDnqyyCEKCASLQ 164
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
192-376 1.07e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 60.42  E-value: 1.07e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 192 GITNLGNTCFFNAVIQNLaqtyilfELMNEIKEDGTKFKISLSSAPQleplvvelsSPGPLTSALFLFLHSMKEAEKgPL 271
Cdd:cd02657    1 GLTNLGNTCYLNSTLQCL-------RSVPELRDALKNYNPARRGANQ---------SSDNLTNALRDLFDTMDKKQE-PV 63
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 272 SPKVLFNQLCQKAPRFK------GFQQQDSQELLhhlldavrteetkriqASILKAFNNpttktadeetrkkvkAYGKEG 345
Cdd:cd02657   64 PPIEFLQLLRMAFPQFAekqnqgGYAQQDAEECW----------------SQLLSVLSQ---------------KLPGAG 112
                        170       180       190
                 ....*....|....*....|....*....|.
gi 564350486 346 VKMNFIDRIFIGELTSTVMCEECANISTMKD 376
Cdd:cd02657  113 SKGSFIDQLFGIELETKMKCTESPDEEEVST 143
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
192-385 1.34e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 60.37  E-value: 1.34e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 192 GITNLGNTCFFNAVIQNLAQT-----YIL-FELMNEIKEDGtkFKISlssapqleplvvelsspgpltSALFLFLHSMKE 265
Cdd:cd02661    3 GLQNLGNTCFLNSVLQCLTHTpplanYLLsREHSKDCCNEG--FCMM---------------------CALEAHVERALA 59
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 266 AEKGPLSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAvrteetkrIQASILKAFNNpttktaDEETRKKVKAYgkeg 345
Cdd:cd02661   60 SSGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDA--------MQKACLDRFKK------LKAVDPSSQET---- 121
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 564350486 346 vkmNFIDRIFIGELTSTVMCEECANISTMKDPFIDISLPI 385
Cdd:cd02661  122 ---TLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDI 158
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
192-407 3.10e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 59.58  E-value: 3.10e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 192 GITNLGNTCFFNAVIQNLAQT----YILFELMNEIKEDGTKfkiSLSSAPQLeplvvelsspgpltsaLFLFLHSMKEAE 267
Cdd:cd02659    4 GLKNQGATCYMNSLLQQLYMTpefrNAVYSIPPTEDDDDNK---SVPLALQR----------------LFLFLQLSESPV 64
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 268 KGPlSPKVLFNQLCQKAprFKGFQQQDSQELLHHLLDAVRTeetkriqasilkafnnpttktadeetrkKVKAYGKEGVk 347
Cdd:cd02659   65 KTT-ELTDKTRSFGWDS--LNTFEQHDVQEFFRVLFDKLEE----------------------------KLKGTGQEGL- 112
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 348 mnfIDRIFIGELTSTVMCEECANISTMKDPFIDISLPIieervskpvllgkmSKCRSLQE 407
Cdd:cd02659  113 ---IKNLFGGKLVNYIICKECPHESEREEYFLDLQVAV--------------KGKKNLEE 155
ZnF_UBP smart00290
Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;
62-122 3.51e-07

Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;


Pssm-ID: 197632  Cd Length: 50  Bit Score: 47.36  E-value: 3.51e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564350486    62 CSECLkerrlcdgqpvLPSDVWLCLKCGFQGCGkNSESQHSLRHFKSSGaesHCVVISLST 122
Cdd:smart00290   2 CSVCG-----------TIENLWLCLTCGQVGCG-RYQNGHALEHFEETG---HPLVVKLGT 47
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
192-393 1.17e-06

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 50.36  E-value: 1.17e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 192 GITNLGNTCFFNAVIQnlaqtyilfelmneikedgtkfkiSLSSapqleplvvelsspgpltsalflflhsmkeaekgpl 271
Cdd:cd02674    1 GLRNLGNTCYMNSILQ------------------------CLSA------------------------------------ 20
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 272 spkvlfnqlcqkaprfkgfQQQDSQELLHHLLDAVRteetkriqasilkafnnpttktadeetrkkvkaygkegvkmNFI 351
Cdd:cd02674   21 -------------------DQQDAQEFLLFLLDGLH-----------------------------------------SII 40
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 564350486 352 DRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEERVSKP 393
Cdd:cd02674   41 VDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAP 82
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
674-810 3.14e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 46.37  E-value: 3.14e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 674 ISAVPAILILHLKRFHQAGLSLRKVNRHVDFPLTLDLAPFCAAT---CKNISVGEKVLYG--------------LYGIVE 736
Cdd:cd02670   95 FAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPDFVADDpraCSKCQLECRVCYDdkdfsptcgkfklsLCSAVC 174
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 737 HSG-SMRGGHYTAYVKvrvpsrklseciTGRKTAPGLKEADSElgGHWVHVSD-------TYVQVVPESRALSaQAYLLF 808
Cdd:cd02670  175 HRGtSLETGHYVAFVR------------YGSYSLTETDNEAYN--AQWVFFDDmadrdgvSNGFNIPAARLLE-DPYMLF 239

                 ..
gi 564350486 809 YE 810
Cdd:cd02670  240 YQ 241
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
663-810 1.09e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 45.01  E-value: 1.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 663 GVYTNARKQLLISAVPAILILHLKRFH-QAGLSLRKVNRHVDFPLTLDLAPfcaatcknisvgekvlYGLYGIVEHSG-S 740
Cdd:cd02658  201 KEKTTATKTTGFKTFPDYLVINMKRFQlLENWVPKKLDVPIDVPEELGPGK----------------YELIAFISHKGtS 264
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 741 MRGGHYTAYVKvrvpsrklsecitgrktapglKEADSElgGHWVHVSDTYVQVVPESRALSAQAYLLFYE 810
Cdd:cd02658  265 VHSGHYVAHIK---------------------KEIDGE--GKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
192-385 1.18e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 45.10  E-value: 1.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 192 GITNLGNTCFFNAVIQnlaqtyILFelMN-EIKEDGTKFKISLSSAPQLEPLVVELSSPGPLTSALFLFLHsMKEAEKGP 270
Cdd:cd02668    1 GLKNLGATCYVNSFLQ------LWF--MNlEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQ-LQFGNRSV 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 271 LSPKVLFNQLcqkapRFKGFQQQDSQELLHHLLDAvrteetkrIQASILKAFNNpttktadeetrkKVKaygkegvkmNF 350
Cdd:cd02668   72 VDPSGFVKAL-----GLDTGQQQDAQEFSKLFLSL--------LEAKLSKSKNP------------DLK---------NI 117
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 564350486 351 IDRIFIGELTSTVMCEECANISTMKDPFIDISLPI 385
Cdd:cd02668  118 VQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQL 152
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
192-309 3.43e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 39.85  E-value: 3.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564350486 192 GITNLGNTCFFNAVIQnlaqtyILFELMNEIKEDGTKFKISLSSAPQLEplvVELSSPGPLTsalflfLHSMKEAEKGP- 270
Cdd:cd02665    1 GLKNVGNTCWFSAVIQ------SLFSQQQDVSEFTHLLLDWLEDAFQAA---AEAISPGEKS------KNPMVQLFYGTf 65
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 564350486 271 LSPKVLFNQLCQKAPRFKGFQ-QQDSQELLHHLLDAVRTE 309
Cdd:cd02665   66 LTEGVLEGKPFCNCETFGQYPlQVNGYGNLHECLEAAMFE 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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