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Conserved domains on  [gi|564361567|ref|XP_006242308|]
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synaptonemal complex central element protein 3 isoform X3 [Rattus norvegicus]

Protein Classification

Synaptonemal_3 domain-containing protein( domain architecture ID 10633556)

Synaptonemal_3 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Synaptonemal_3 pfam15191
Synaptonemal complex central element protein 3;
1-85 1.16e-37

Synaptonemal complex central element protein 3;


:

Pssm-ID: 405806  Cd Length: 85  Bit Score: 120.91  E-value: 1.16e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564361567   1 MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQEL 80
Cdd:pfam15191  1 MSDGDPDERLYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFQNCKEEMEKNWQEL 80


                 ....*
gi 564361567  81 LTETK 85
Cdd:pfam15191 81 LAETK 85
 
Name Accession Description Interval E-value
Synaptonemal_3 pfam15191
Synaptonemal complex central element protein 3;
1-85 1.16e-37

Synaptonemal complex central element protein 3;


Pssm-ID: 405806  Cd Length: 85  Bit Score: 120.91  E-value: 1.16e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564361567   1 MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQEL 80
Cdd:pfam15191  1 MSDGDPDERLYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFQNCKEEMEKNWQEL 80


                 ....*
gi 564361567  81 LTETK 85
Cdd:pfam15191 81 LAETK 85
 
Name Accession Description Interval E-value
Synaptonemal_3 pfam15191
Synaptonemal complex central element protein 3;
1-85 1.16e-37

Synaptonemal complex central element protein 3;


Pssm-ID: 405806  Cd Length: 85  Bit Score: 120.91  E-value: 1.16e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564361567   1 MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQEL 80
Cdd:pfam15191  1 MSDGDPDERLYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFQNCKEEMEKNWQEL 80


                 ....*
gi 564361567  81 LTETK 85
Cdd:pfam15191 81 LAETK 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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