|
Name |
Accession |
Description |
Interval |
E-value |
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
177-484 |
1.94e-76 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 242.65 E-value: 1.94e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 177 DLVPLCRNYVRRIHVDQFLPPVRMPTPPQGEEQSDSGSEGEGNEPEKNHYQ-LQALVGGLKYLEELDlvYGVKDCGMNFE 255
Cdd:cd00116 1 LQLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPsLKELCLSLNETGRIP--RGLQSLLQGLT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 256 --WNLFLFTYRDCHS---LAATIKACH---TLKIFRLTRSKVDDDKARILIRSLLDH-PALEELDLSHNLIGDRGARAAA 326
Cdd:cd00116 79 kgCGLQELDLSDNALgpdGCGVLESLLrssSLQELKLNNNGLGDRGLRLLAKGLKDLpPALEKLVLGRNRLEGASCEALA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 327 KLLSH-SRLRVLNLANNQLRASGAQSLAHALAHNTNLVSLNLRLNCIEDEGGQAIAHALETNKCLTVLNLGGNELSE-PT 404
Cdd:cd00116 159 KALRAnRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDaGA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 405 ATLLSQVLPVNTTLISLNLSCNHIGQDGGKQLLEGMSDNKTILEFDLRLSDVAQESEYLIGQVLHNNREaaRQRTLSPGH 484
Cdd:cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGN--ELESLWVKD 316
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
266-486 |
5.38e-35 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 135.69 E-value: 5.38e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 266 CHSLAATIKACHTLKIFRLTRSKVDDDKARILIRSLLDHPALEELDLSHNLIGDRGARAAAKLLSH-SRLRVLNLANNQL 344
Cdd:COG5238 197 IEELAEALTQNTTVTTLWLKRNPIGDEGAEILAEALKGNKSLTTLDLSNNQIGDEGVIALAEALKNnTTVETLYLSGNQI 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 345 RASGAQSLAHALAHNTNLVSLNLRLNCIEDEGGQAIAHALETNKCLTVLNLGGNELSEPTATLLSQVLPVNTTLISLNLS 424
Cdd:COG5238 277 GAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNKTLHTLNLAYNGIGAQGAIALAKALQENTTLHSLDLS 356
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564367381 425 CNHIGQDGGKQLLEGMSDNKTILEFDLRLSDV-AQESEYLIGQVLHNNreaARQRTLSPGHLT 486
Cdd:COG5238 357 DNQIGDEGAIALAKYLEGNTTLRELNLGKNNIgKQGAEALIDALQTNR---LHTLILDGNLIG 416
|
|
| LRR_6 |
pfam13516 |
Leucine Rich repeat; |
358-381 |
1.31e-04 |
|
Leucine Rich repeat;
Pssm-ID: 463907 [Multi-domain] Cd Length: 24 Bit Score: 38.76 E-value: 1.31e-04
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
304-331 |
3.32e-04 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 37.77 E-value: 3.32e-04
10 20
....*....|....*....|....*...
gi 564367381 304 HPALEELDLSHNLIGDRGARAAAKLLSH 331
Cdd:smart00368 1 NPSLRELDLSNNKLGDEGARALAEALKD 28
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
307-428 |
8.22e-03 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 39.06 E-value: 8.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 307 LEELDLSHNLIGDRGARaaaKLLSHSRLRVLNLANNQLraSGaqSLAHALAHNTNLVSLNLRLNCIEDEggqaIAHALET 386
Cdd:PLN00113 477 LENLDLSRNQFSGAVPR---KLGSLSELMQLKLSENKL--SG--EIPDELSSCKKLVSLDLSHNQLSGQ----IPASFSE 545
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 564367381 387 NKCLTVLNLGGNELSEPTATLLSQVlpvnTTLISLNLSCNHI 428
Cdd:PLN00113 546 MPVLSQLDLSQNQLSGEIPKNLGNV----ESLVQVNISHNHL 583
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
177-484 |
1.94e-76 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 242.65 E-value: 1.94e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 177 DLVPLCRNYVRRIHVDQFLPPVRMPTPPQGEEQSDSGSEGEGNEPEKNHYQ-LQALVGGLKYLEELDlvYGVKDCGMNFE 255
Cdd:cd00116 1 LQLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPsLKELCLSLNETGRIP--RGLQSLLQGLT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 256 --WNLFLFTYRDCHS---LAATIKACH---TLKIFRLTRSKVDDDKARILIRSLLDH-PALEELDLSHNLIGDRGARAAA 326
Cdd:cd00116 79 kgCGLQELDLSDNALgpdGCGVLESLLrssSLQELKLNNNGLGDRGLRLLAKGLKDLpPALEKLVLGRNRLEGASCEALA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 327 KLLSH-SRLRVLNLANNQLRASGAQSLAHALAHNTNLVSLNLRLNCIEDEGGQAIAHALETNKCLTVLNLGGNELSE-PT 404
Cdd:cd00116 159 KALRAnRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDaGA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 405 ATLLSQVLPVNTTLISLNLSCNHIGQDGGKQLLEGMSDNKTILEFDLRLSDVAQESEYLIGQVLHNNREaaRQRTLSPGH 484
Cdd:cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGN--ELESLWVKD 316
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
266-486 |
5.38e-35 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 135.69 E-value: 5.38e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 266 CHSLAATIKACHTLKIFRLTRSKVDDDKARILIRSLLDHPALEELDLSHNLIGDRGARAAAKLLSH-SRLRVLNLANNQL 344
Cdd:COG5238 197 IEELAEALTQNTTVTTLWLKRNPIGDEGAEILAEALKGNKSLTTLDLSNNQIGDEGVIALAEALKNnTTVETLYLSGNQI 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 345 RASGAQSLAHALAHNTNLVSLNLRLNCIEDEGGQAIAHALETNKCLTVLNLGGNELSEPTATLLSQVLPVNTTLISLNLS 424
Cdd:COG5238 277 GAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNKTLHTLNLAYNGIGAQGAIALAKALQENTTLHSLDLS 356
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564367381 425 CNHIGQDGGKQLLEGMSDNKTILEFDLRLSDV-AQESEYLIGQVLHNNreaARQRTLSPGHLT 486
Cdd:COG5238 357 DNQIGDEGAIALAKYLEGNTTLRELNLGKNNIgKQGAEALIDALQTNR---LHTLILDGNLIG 416
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
277-471 |
1.10e-30 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 123.75 E-value: 1.10e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 277 HTLKIFRLTRSKVDDDKARILIRSLLDHPALEELDLSHNLIGDRGARAAAKLLSHS-RLRVLNLANNQLRASGAQSLAHA 355
Cdd:COG5238 180 NSVETVYLGCNQIGDEGIEELAEALTQNTTVTTLWLKRNPIGDEGAEILAEALKGNkSLTTLDLSNNQIGDEGVIALAEA 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 356 LAHNTNLVSLNLRLNCIEDEGGQAIAHALETNKCLTVLNLGGNELSEPTATLLSQVLPVNTTLISLNLSCNHIGQDGGKQ 435
Cdd:COG5238 260 LKNNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNKTLHTLNLAYNGIGAQGAIA 339
|
170 180 190
....*....|....*....|....*....|....*.
gi 564367381 436 LLEGMSDNKTILEFDLRLSDVAQESEYLIGQVLHNN 471
Cdd:COG5238 340 LAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEGN 375
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
267-438 |
1.08e-28 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 117.97 E-value: 1.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 267 HSLAATIKACHTLKIFRLTRSKVDDDKARILIRSLLDHPALEELDLSHNLIGDRGARAAAKLLSHSR-LRVLNLANNQLR 345
Cdd:COG5238 254 IALAEALKNNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNKtLHTLNLAYNGIG 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 346 ASGAQSLAHALAHNTNLVSLNLRLNCIEDEGGQAIAHALETNKCLTVLNLGGNELSEPTATLLSQVLPVNTtLISLNLSC 425
Cdd:COG5238 334 AQGAIALAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEGNTTLRELNLGKNNIGKQGAEALIDALQTNR-LHTLILDG 412
|
170
....*....|...
gi 564367381 426 NHIGQDGGKQLLE 438
Cdd:COG5238 413 NLIGAEAQQRLEQ 425
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
307-472 |
3.45e-27 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 113.73 E-value: 3.45e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 307 LEELDLSHNLIGDRGARAAAK-LLSHSRLRVLNLANNQLRASGAQSLAHALAHNTNLVSLNLRLNCIEDEGGQAIAHALE 385
Cdd:COG5238 182 VETVYLGCNQIGDEGIEELAEaLTQNTTVTTLWLKRNPIGDEGAEILAEALKGNKSLTTLDLSNNQIGDEGVIALAEALK 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 386 TNKCLTVLNLGGNELSEPTATLLSQVLPVNTTLISLNLSCNHIGQDGGKQLLEGMSDNKTILEFDLRLSDVAQESEYLIG 465
Cdd:COG5238 262 NNTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNKTLHTLNLAYNGIGAQGAIALA 341
|
....*..
gi 564367381 466 QVLHNNR 472
Cdd:COG5238 342 KALQENT 348
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
267-471 |
5.75e-22 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 98.32 E-value: 5.75e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 267 HSLAATIKACHTLKI-FRLTRSKVDDD---------KARILIRSLLDHPALEELDLSHNL--IGDRGARAAAKLLSHSRL 334
Cdd:COG5238 103 VALAETATAVATPPPdLRRIMAKTLEDslilylalpRRINLIQVLKDPLGGNAVHLLGLAarLGLLAAISMAKALQNNSV 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 335 RVLNLANNQLRASGAQSLAHALAHNTNLVSLNLRLNCIEDEGGQAIAHALETNKCLTVLNLGGNELSEPTATLLSQVLPV 414
Cdd:COG5238 183 ETVYLGCNQIGDEGIEELAEALTQNTTVTTLWLKRNPIGDEGAEILAEALKGNKSLTTLDLSNNQIGDEGVIALAEALKN 262
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564367381 415 NTTLISLNLSCNHIGQDGGKQLLEGMSDNKTILEFDLRLSDVAQESEYLIGQVLHNN 471
Cdd:COG5238 263 NTTVETLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGN 319
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
306-472 |
2.85e-10 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 62.11 E-value: 2.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 306 ALEELDLSHNLIGDRGARAAAKLLSHSRlrvlNLANNQLRASGAQSLAHALAHNTNLvsLNLRLNCIEDEGGQAIAHALE 385
Cdd:COG5238 104 ALAETATAVATPPPDLRRIMAKTLEDSL----ILYLALPRRINLIQVLKDPLGGNAV--HLLGLAARLGLLAAISMAKAL 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 386 TNKCLTVLNLGGNELSEPTATLLSQVLPVNTTLISLNLSCNHIGQDGGKQLLEGMSDNKTILEFDLRLSDVAQESEYLIG 465
Cdd:COG5238 178 QNNSVETVYLGCNQIGDEGIEELAEALTQNTTVTTLWLKRNPIGDEGAEILAEALKGNKSLTTLDLSNNQIGDEGVIALA 257
|
....*..
gi 564367381 466 QVLHNNR 472
Cdd:COG5238 258 EALKNNT 264
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
230-358 |
3.22e-09 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 59.03 E-value: 3.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 230 ALVGGL---KYLEELDLVY-GVKDCGMNFewnlflftyrdchsLAATIKACHTLKIFRLTRSKVDDDKARILIRSLLDHP 305
Cdd:COG5238 311 ALAEGLqgnKTLHTLNLAYnGIGAQGAIA--------------LAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEGNT 376
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 564367381 306 ALEELDLSHNLIGDRGARAAAKLLSHSRLRVLNLANNQLRASGAQSLAHALAH 358
Cdd:COG5238 377 TLRELNLGKNNIGKQGAEALIDALQTNRLHTLILDGNLIGAEAQQRLEQLLER 429
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
268-438 |
9.72e-08 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 54.17 E-value: 9.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 268 SLAATIKACHTLKIFRLTRSKVDDdkariLIRSLLDHPALEELDLSHNLIGDrgarAAAKLLSHSRLRVLNLANNQLRas 347
Cdd:COG4886 150 DLPEPLGNLTNLKSLDLSNNQLTD-----LPEELGNLTNLKELDLSNNQITD----LPEPLGNLTNLEELDLSGNQLT-- 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 348 gaqSLAHALAHNTNLVSLNLRLNCIEDeggqaiAHALETNKCLTVLNLGGNELSE-PTATLLSQvlpvnttLISLNLSCN 426
Cdd:COG4886 219 ---DLPEPLANLTNLETLDLSNNQLTD------LPELGNLTNLEELDLSNNQLTDlPPLANLTN-------LKTLDLSNN 282
|
170
....*....|..
gi 564367381 427 HIGQDGGKQLLE 438
Cdd:COG4886 283 QLTDLKLKELEL 294
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
253-428 |
7.46e-07 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 51.47 E-value: 7.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 253 NFEWNLFLFTYRDCHSLAATIKACHTLKIFRLTRSKVDDDKARILIRSLLDHPALEELDLSHNligdrgaraaAKLLSHS 332
Cdd:COG4886 44 SLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN----------EELSNLT 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 333 RLRVLNLANNQLrasgaQSLAHALAHNTNLVSLNLRLNCIEDeggqaIAHALETNKCLTVLNLGGNELSEptatlLSQVL 412
Cdd:COG4886 114 NLESLDLSGNQL-----TDLPEELANLTNLKELDLSNNQLTD-----LPEPLGNLTNLKSLDLSNNQLTD-----LPEEL 178
|
170
....*....|....*.
gi 564367381 413 PVNTTLISLNLSCNHI 428
Cdd:COG4886 179 GNLTNLKELDLSNNQI 194
|
|
| LRR_6 |
pfam13516 |
Leucine Rich repeat; |
358-381 |
1.31e-04 |
|
Leucine Rich repeat;
Pssm-ID: 463907 [Multi-domain] Cd Length: 24 Bit Score: 38.76 E-value: 1.31e-04
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
268-476 |
2.87e-04 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 43.38 E-value: 2.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 268 SLAATIKACHTLKIFRLTRSKVDDdkarilIRSLLDHPALEELDLSHNLIGDrgaraAAKLLSHSRLRVLNLANNQLRAS 347
Cdd:COG4886 219 DLPEPLANLTNLETLDLSNNQLTD------LPELGNLTNLEELDLSNNQLTD-----LPPLANLTNLKTLDLSNNQLTDL 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 348 GAQSLAHALAHNTNLVSLNLRLNCIEDEGGQAIAHALETNkcLTVLNLGGNELSEPTATLLSQVLPVNTTLISLNLSCNH 427
Cdd:COG4886 288 KLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLL--LLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTL 365
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 564367381 428 IGQDGGKQLLEGMSDNKTILEFDLRLSDVAQESEYLIGQVLHNNREAAR 476
Cdd:COG4886 366 LLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALLDAVNTE 414
|
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
304-331 |
3.32e-04 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 37.77 E-value: 3.32e-04
10 20
....*....|....*....|....*...
gi 564367381 304 HPALEELDLSHNLIGDRGARAAAKLLSH 331
Cdd:smart00368 1 NPSLRELDLSNNKLGDEGARALAEALKD 28
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
305-398 |
3.36e-04 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 42.08 E-value: 3.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 305 PALEELDLSHN-------LIGDRGARAAaklLSHSrLRVLNLANNQLRasgaqSLAhALAHNTNLVSLNLRLNCIEDegG 377
Cdd:cd21340 90 TNLEELHIENQrlppgekLTFDPRSLAA---LSNS-LRVLNISGNNID-----SLE-PLAPLRNLEQLDASNNQISD--L 157
|
90 100
....*....|....*....|.
gi 564367381 378 QAIAHALETNKCLTVLNLGGN 398
Cdd:cd21340 158 EELLDLLSSWPSLRELDLTGN 178
|
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
331-358 |
1.73e-03 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 35.85 E-value: 1.73e-03
10 20
....*....|....*....|....*...
gi 564367381 331 HSRLRVLNLANNQLRASGAQSLAHALAH 358
Cdd:smart00368 1 NPSLRELDLSNNKLGDEGARALAEALKD 28
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
307-428 |
8.22e-03 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 39.06 E-value: 8.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564367381 307 LEELDLSHNLIGDRGARaaaKLLSHSRLRVLNLANNQLraSGaqSLAHALAHNTNLVSLNLRLNCIEDEggqaIAHALET 386
Cdd:PLN00113 477 LENLDLSRNQFSGAVPR---KLGSLSELMQLKLSENKL--SG--EIPDELSSCKKLVSLDLSHNQLSGQ----IPASFSE 545
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 564367381 387 NKCLTVLNLGGNELSEPTATLLSQVlpvnTTLISLNLSCNHI 428
Cdd:PLN00113 546 MPVLSQLDLSQNQLSGEIPKNLGNV----ESLVQVNISHNHL 583
|
|
|