|
Name |
Accession |
Description |
Interval |
E-value |
| DnaJ_bact |
TIGR02349 |
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ... |
466-552 |
3.79e-21 |
|
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Pssm-ID: 274090 [Multi-domain] Cd Length: 354 Bit Score: 94.97 E-value: 3.79e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 466 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS-GQDLDEEGM- 543
Cdd:TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAE------EKFKEINEAYEVLSDPEKRAQYDQfGHAGFNGGGg 74
|
90
....*....|...
gi 564374216 544 ----NMGDFDANN 552
Cdd:TIGR02349 75 ggggGFNGFDIGF 87
|
|
| DnaJ |
pfam00226 |
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ... |
466-533 |
5.24e-21 |
|
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.
Pssm-ID: 395170 [Multi-domain] Cd Length: 63 Bit Score: 86.76 E-value: 5.24e-21
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564374216 466 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTILSDPKKKTRYD 533
Cdd:pfam00226 1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGdPEAEEK------FKEINEAYEVLSDPEKRAIYD 63
|
|
| PRK10767 |
PRK10767 |
chaperone protein DnaJ; Provisional |
462-554 |
6.66e-21 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 236757 [Multi-domain] Cd Length: 371 Bit Score: 94.83 E-value: 6.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 462 SKRkDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTILSDPKKKTRYDS-GQDLD 539
Cdd:PRK10767 2 AKR-DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGdKEAEEK------FKEIKEAYEVLSDPQKRAAYDQyGHAAF 74
|
90
....*....|....*
gi 564374216 540 EEGMNMGDFDANNIF 554
Cdd:PRK10767 75 EQGGGGGGFGGGGGF 89
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
254-483 |
1.86e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 90.84 E-value: 1.86e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 254 LEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDhekacl 333
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 334 acrNAKALKAKkedGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYV 413
Cdd:COG0457 75 ---DAEALNNL---GLALQALGRYEEALEDYDKALELDPDD----AEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 414 KAYLRRAQCYMDTEQFEEAVRDYEKVYQTEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIK 483
Cdd:COG0457 145 DALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
|
|
| terminal_TopJ |
NF037946 |
terminal organelle assembly protein TopJ; |
462-554 |
2.03e-20 |
|
terminal organelle assembly protein TopJ;
Pssm-ID: 468284 [Multi-domain] Cd Length: 440 Bit Score: 94.12 E-value: 2.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 462 SKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS-GQDlDE 540
Cdd:NF037946 2 EEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKAPDAA------EIFAEINEAYEVLSNPEKRANYDKyGHD-GV 74
|
90
....*....|....
gi 564374216 541 EGMNMGDFDANNIF 554
Cdd:NF037946 75 DGEGGFGFDAFDVF 88
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
112-280 |
1.00e-19 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 88.91 E-value: 1.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 112 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCH 191
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 192 LSLGNAMAACRSFQRALELDHKNAQAqqefknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECL 271
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEA------------LYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIAL 154
|
....*....
gi 564374216 272 AMLGRYPEA 280
Cdd:COG0457 155 EKLGRYEEA 163
|
|
| PRK14289 |
PRK14289 |
molecular chaperone DnaJ; |
464-547 |
4.32e-19 |
|
molecular chaperone DnaJ;
Pssm-ID: 237660 [Multi-domain] Cd Length: 386 Bit Score: 89.51 E-value: 4.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 464 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS-------- 534
Cdd:PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGdKEAE------EKFKEAAEAYDVLSDPDKRSRYDQfghagvgg 77
|
90
....*....|....*.
gi 564374216 535 ---GQDLDEEGMNMGD 547
Cdd:PRK14289 78 aagGGGFSGEGMSMED 93
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
140-368 |
4.76e-19 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 86.60 E-value: 4.76e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 140 IDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAqq 219
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 220 efknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALY 299
Cdd:COG0457 79 ----------LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 300 VRGLCLYYEDCIEKAVQFFVQAL-RMAPDHEKACLACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEAL 368
Cdd:COG0457 149 NLGIALEKLGRYEEALELLEKLEaAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAA 218
|
|
| DnaJ |
COG0484 |
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ... |
466-533 |
3.81e-18 |
|
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440252 [Multi-domain] Cd Length: 139 Bit Score: 81.29 E-value: 3.81e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564374216 466 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTILSDPKKKTRYD 533
Cdd:COG0484 1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGdPEAEEK------FKEINEAYEVLSDPEKRAAYD 63
|
|
| PRK14277 |
PRK14277 |
chaperone protein DnaJ; Provisional |
464-548 |
4.55e-18 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184599 [Multi-domain] Cd Length: 386 Bit Score: 86.39 E-value: 4.55e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 464 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekKFKEVGEAFTILSDPKKKTRYDSGQD--LDEE 541
Cdd:PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQ-----KFKEINEAYEILSDPQKRAQYDQFGHaaFDPG 78
|
....*..
gi 564374216 542 GMNMGDF 548
Cdd:PRK14277 79 GFGQGGF 85
|
|
| PRK14290 |
PRK14290 |
chaperone protein DnaJ; Provisional |
465-554 |
1.94e-17 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172778 [Multi-domain] Cd Length: 365 Bit Score: 84.21 E-value: 1.94e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 465 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeeKKFKEVGEAFTILSDPKKKTRYDSGQDLD----E 540
Cdd:PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAE----EKFKEISEAYEVLSDPQKRRQYDQTGTVDfgagG 78
|
90
....*....|....*...
gi 564374216 541 EGMNMGDF----DANNIF 554
Cdd:PRK14290 79 SNFNWDNFthfsDINDIF 96
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
180-471 |
2.33e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 82.47 E-value: 2.33e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 180 FVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAqqefknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPA 259
Cdd:COG2956 7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEA------------HLALGNLYRRRGEYDRAIRIHQKLLERDPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 260 CHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLacrnak 339
Cdd:COG2956 75 RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYC------ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 340 alkakkEDGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRR 419
Cdd:COG2956 149 ------ELAELYLEQGDYDEAIEALEKALKLDPDC----ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL 218
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 564374216 420 AQCYMDTEQFEEAVRDYEKVYqtEKTKEHKQLLKNAQLELKKSKRKDYYKIL 471
Cdd:COG2956 219 AELYEKLGDPEEALELLRKAL--ELDPSDDLLLALADLLERKEGLEAALALL 268
|
|
| PRK14298 |
PRK14298 |
chaperone protein DnaJ; Provisional |
462-555 |
3.13e-17 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184612 [Multi-domain] Cd Length: 377 Bit Score: 83.74 E-value: 3.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 462 SKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDSgqdLDEE 541
Cdd:PRK14298 2 ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAE------EKFKEISEAYAVLSDAEKRAQYDR---FGHA 72
|
90
....*....|....
gi 564374216 542 GMNmGDFDANNIFK 555
Cdd:PRK14298 73 GID-NQYSAEDIFR 85
|
|
| DnaJ |
smart00271 |
DnaJ molecular chaperone homology domain; |
465-528 |
4.44e-17 |
|
DnaJ molecular chaperone homology domain;
Pssm-ID: 197617 [Multi-domain] Cd Length: 60 Bit Score: 75.35 E-value: 4.44e-17
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564374216 465 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeeKKFKEVGEAFTILSDPKK 528
Cdd:smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAE----EKFKEINEAYEVLSDPEK 60
|
|
| PRK14297 |
PRK14297 |
molecular chaperone DnaJ; |
465-533 |
4.98e-17 |
|
molecular chaperone DnaJ;
Pssm-ID: 184611 [Multi-domain] Cd Length: 380 Bit Score: 83.29 E-value: 4.98e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 465 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD 533
Cdd:PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGnKEAE------EKFKEINEAYQVLSDPQKKAQYD 67
|
|
| PRK14295 |
PRK14295 |
molecular chaperone DnaJ; |
465-538 |
1.20e-16 |
|
molecular chaperone DnaJ;
Pssm-ID: 237665 [Multi-domain] Cd Length: 389 Bit Score: 82.20 E-value: 1.20e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564374216 465 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDSGQDL 538
Cdd:PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGdAKAE------ERFKEISEAYDVLSDEKKRKEYDEARSL 77
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
120-329 |
4.73e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 78.62 E-value: 4.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 120 GNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMA 199
Cdd:COG2956 49 GNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEK 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 200 ACRSFQRALELDHKNAQAQQEfknanavmeyekIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPE 279
Cdd:COG2956 129 AIEVLERLLKLGPENAHAYCE------------LAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564374216 280 AQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHE 329
Cdd:COG2956 197 AIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD 246
|
|
| PRK14279 |
PRK14279 |
molecular chaperone DnaJ; |
465-556 |
7.01e-16 |
|
molecular chaperone DnaJ;
Pssm-ID: 237655 [Multi-domain] Cd Length: 392 Bit Score: 79.78 E-value: 7.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 465 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDSGQDLDEEG- 542
Cdd:PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGdPAAE------ERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGg 82
|
90 100 110
....*....|....*....|....*....|..
gi 564374216 543 ------------------MNMGDFDANNIFKA 556
Cdd:PRK14279 83 fggrrfdggggfggfgtgGDGAEFNLNDLFDA 114
|
|
| PRK14299 |
PRK14299 |
chaperone protein DnaJ; Provisional |
465-534 |
7.97e-16 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237667 [Multi-domain] Cd Length: 291 Bit Score: 78.06 E-value: 7.97e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 465 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS 534
Cdd:PRK14299 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAE------EKFKEINEAYTVLSDPEKRRIYDT 67
|
|
| PRK14280 |
PRK14280 |
molecular chaperone DnaJ; |
462-548 |
1.12e-15 |
|
molecular chaperone DnaJ;
Pssm-ID: 237656 [Multi-domain] Cd Length: 376 Bit Score: 79.00 E-value: 1.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 462 SKRkDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD------SG 535
Cdd:PRK14280 2 AKR-DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGAD------EKFKEISEAYEVLSDDQKRAQYDqfghagPN 74
|
90
....*....|...
gi 564374216 536 QDLDEEGMNMGDF 548
Cdd:PRK14280 75 QGFGGGGFGGGDF 87
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
111-245 |
1.21e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 76.97 E-value: 1.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 111 REAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKC 190
Cdd:COG0457 40 DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLA 119
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 564374216 191 HLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVMEYEKIAEVDFEKRDFRK 245
Cdd:COG0457 120 LLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
|
| PRK14291 |
PRK14291 |
chaperone protein DnaJ; Provisional |
464-553 |
1.37e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237661 [Multi-domain] Cd Length: 382 Bit Score: 78.66 E-value: 1.37e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 464 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD-------SGQ 536
Cdd:PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAE------EKFKEINEAYQVLSDPEKRKLYDqfghaafSGS 75
|
90
....*....|....*...
gi 564374216 537 DLDEEGMN-MGDFDANNI 553
Cdd:PRK14291 76 GQQQQGQEgFSDFGGGNI 93
|
|
| PRK14276 |
PRK14276 |
chaperone protein DnaJ; Provisional |
465-533 |
1.40e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237653 [Multi-domain] Cd Length: 380 Bit Score: 78.59 E-value: 1.40e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564374216 465 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD 533
Cdd:PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAE------EKYKEVQEAYETLSDPQKRAAYD 66
|
|
| PRK14283 |
PRK14283 |
chaperone protein DnaJ; Provisional |
464-555 |
1.44e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184604 [Multi-domain] Cd Length: 378 Bit Score: 78.71 E-value: 1.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 464 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDSgqdLDEEGM 543
Cdd:PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAE------EKFKEISEAYAVLSDDEKRQRYDQ---FGHAGM 74
|
90
....*....|..
gi 564374216 544 NmgDFDANNIFK 555
Cdd:PRK14283 75 D--GFSQEDIFN 84
|
|
| DnaJ |
cd06257 |
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ... |
466-525 |
1.90e-15 |
|
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Pssm-ID: 99751 [Multi-domain] Cd Length: 55 Bit Score: 70.65 E-value: 1.90e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 466 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekKFKEVGEAFTILSD 525
Cdd:cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEE-----KFKEINEAYEVLSD 55
|
|
| PRK14294 |
PRK14294 |
chaperone protein DnaJ; Provisional |
462-533 |
1.92e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237664 [Multi-domain] Cd Length: 366 Bit Score: 78.27 E-value: 1.92e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564374216 462 SKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEVQKEEEkkfkevGEAFTILSDPKKKTRYD 533
Cdd:PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGdKEAEELFKEA------AEAYEVLSDPKKRGIYD 67
|
|
| PRK14301 |
PRK14301 |
chaperone protein DnaJ; Provisional |
464-556 |
2.18e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237668 [Multi-domain] Cd Length: 373 Bit Score: 77.86 E-value: 2.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 464 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDSgqdLDEEG 542
Cdd:PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDnPEAE------QKFKEAAEAYEVLRDAEKRARYDR---FGHAG 73
|
90
....*....|....*....
gi 564374216 543 MNMGDF-----DANNIFKA 556
Cdd:PRK14301 74 VNGNGGfggfsSAEDIFSH 92
|
|
| PRK14287 |
PRK14287 |
chaperone protein DnaJ; Provisional |
464-554 |
2.28e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237659 [Multi-domain] Cd Length: 371 Bit Score: 78.13 E-value: 2.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 464 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekkFKEVGEAFTILSDPKKKTRYDSGQDLDEE-- 541
Cdd:PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDK------FKEVKEAYDTLSDPQKKAHYDQFGHTDPNqg 76
|
90
....*....|....*.
gi 564374216 542 --GMNMGDFDA-NNIF 554
Cdd:PRK14287 77 fgGGGAGDFGGfSDIF 92
|
|
| PRK14292 |
PRK14292 |
chaperone protein DnaJ; Provisional |
466-554 |
4.46e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237662 [Multi-domain] Cd Length: 371 Bit Score: 77.24 E-value: 4.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 466 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekkFKEVGEAFTILSDPKKKTRYDSGQDLDEEGMNM 545
Cdd:PRK14292 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEK------FAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPG 76
|
90
....*....|....*
gi 564374216 546 GD------FDANNIF 554
Cdd:PRK14292 77 GDpfggmgFDPMDIF 91
|
|
| termin_org_DnaJ |
TIGR03835 |
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ ... |
464-556 |
5.04e-15 |
|
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274808 [Multi-domain] Cd Length: 871 Bit Score: 78.70 E-value: 5.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 464 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS-GQD-LDEE 541
Cdd:TIGR03835 1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAA------SIFAEINEANDVLSNPKKRANYDKyGHDgVDRE 74
|
90
....*....|....*
gi 564374216 542 GMNmgDFDAnNIFKA 556
Cdd:TIGR03835 75 DDF--DFQA-DVFNS 86
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
336-441 |
9.78e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 73.80 E-value: 9.78e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 336 RNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKA 415
Cdd:COG4785 68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL----AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143
|
90 100
....*....|....*....|....*.
gi 564374216 416 YLRRAQCYMDTEQFEEAVRDYEKVYQ 441
Cdd:COG4785 144 YLNRGIALYYLGRYELAIADLEKALE 169
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
271-447 |
1.24e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 76.96 E-value: 1.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 271 LAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLACrnakalkakkedGNK 350
Cdd:COG3914 88 LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNL------------GEA 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 351 AFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFE 430
Cdd:COG3914 156 LRRLGRLEEAIAALRRALELDPDN----AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWE 231
|
170
....*....|....*..
gi 564374216 431 EAVRDYEKVYQTEKTKE 447
Cdd:COG3914 232 VYDRFEELLAALARGPS 248
|
|
| PRK14282 |
PRK14282 |
chaperone protein DnaJ; Provisional |
464-533 |
1.28e-14 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184603 [Multi-domain] Cd Length: 369 Bit Score: 75.60 E-value: 1.28e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 464 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeeKKFKEVGEAFTILSDPKKKTRYD 533
Cdd:PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAE----QKFKEIQEAYEVLSDPQKRAMYD 68
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
97-217 |
2.09e-14 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 72.64 E-value: 2.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 97 AATEPELLEDEEAKREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRL 176
Cdd:COG4785 57 ALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALEL 136
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 564374216 177 DDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQA 217
Cdd:COG4785 137 DPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPER 177
|
|
| PRK14284 |
PRK14284 |
chaperone protein DnaJ; Provisional |
466-533 |
2.13e-14 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237658 [Multi-domain] Cd Length: 391 Bit Score: 75.26 E-value: 2.13e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564374216 466 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD 533
Cdd:PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGdAEAE------KRFKEVSEAYEVLSDAQKRESYD 64
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
208-471 |
3.42e-14 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 72.35 E-value: 3.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 208 LELDHKNAQAqqefknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDI 287
Cdd:COG0457 1 LELDPDDAEA------------YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 288 LRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDhekaclacrNAKALKAKkedGNKAFKEGNYKLAYELYTEA 367
Cdd:COG0457 69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD---------DAEALYNL---GLALLELGRYDEAIEAYERA 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 368 LGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFEEAVRDYEKVYQTEKTKE 447
Cdd:COG0457 137 LELDPDD----ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212
|
250 260
....*....|....*....|....
gi 564374216 448 HKQLLKNAQLELKKSKRKDYYKIL 471
Cdd:COG0457 213 ILTLAALAELLLLALALLLALRLA 236
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
38-294 |
5.10e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.03 E-value: 5.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 38 LWPQAEPLVGRRARGSPSGRGAAERLDAPTGSALHRRPPTRLFGPGGKMAATAECDVVMAATEPELLEDEEAKREAESFK 117
Cdd:COG3914 3 AAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 118 EQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNA 197
Cdd:COG3914 83 LAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 198 MAACRSFQRALELDHKNAQAQQEfknanavmeyekIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRY 277
Cdd:COG3914 163 EEAIAALRRALELDPDNAEALNN------------LGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDW 230
|
250
....*....|....*..
gi 564374216 278 PEAQFVASDILRMDSTN 294
Cdd:COG3914 231 EVYDRFEELLAALARGP 247
|
|
| PRK14281 |
PRK14281 |
chaperone protein DnaJ; Provisional |
464-556 |
5.93e-14 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237657 [Multi-domain] Cd Length: 397 Bit Score: 73.69 E-value: 5.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 464 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGAS-AEvqkeeeKKFKEVGEAFTILSDPKKKTRYD--------- 533
Cdd:PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKeAE------EHFKEVNEAYEVLSNDDKRRRYDqfghagvgs 75
|
90 100
....*....|....*....|...
gi 564374216 534 SGQDLDEEGMNMGDFDANNIFKA 556
Cdd:PRK14281 76 SAASGGGPGYGGGGGDFNDIFSA 98
|
|
| PRK14293 |
PRK14293 |
molecular chaperone DnaJ; |
466-548 |
6.93e-14 |
|
molecular chaperone DnaJ;
Pssm-ID: 237663 [Multi-domain] Cd Length: 374 Bit Score: 73.49 E-value: 6.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 466 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD-------SG--- 535
Cdd:PRK14293 4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAE------DRFKEINRAYEVLSDPETRARYDqfgeagvSGaag 77
|
90
....*....|....
gi 564374216 536 -QDLDeegmNMGDF 548
Cdd:PRK14293 78 fPDMG----DMGGF 87
|
|
| SEC63 |
COG5407 |
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ... |
466-531 |
7.06e-14 |
|
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 444165 [Multi-domain] Cd Length: 61 Bit Score: 66.18 E-value: 7.06e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564374216 466 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTR 531
Cdd:COG5407 1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDRNKGdPKAE------ERFKEINEAYELLSDAEKRAR 61
|
|
| PTZ00037 |
PTZ00037 |
DnaJ_C chaperone protein; Provisional |
465-554 |
8.74e-14 |
|
DnaJ_C chaperone protein; Provisional
Pssm-ID: 240236 [Multi-domain] Cd Length: 421 Bit Score: 73.32 E-value: 8.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 465 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRhsGASAEvqkeeekKFKEVGEAFTILSDPKKKTRYDsgqDLDEEGM- 543
Cdd:PTZ00037 28 EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDK--GGDPE-------KFKEISRAYEVLSDPEKRKIYD---EYGEEGLe 95
|
90
....*....|..
gi 564374216 544 -NMGDFDANNIF 554
Cdd:PTZ00037 96 gGEQPADASDLF 107
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
118-323 |
1.39e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 71.30 E-value: 1.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 118 EQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNA 197
Cdd:COG2956 81 ELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDY 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 198 MAACRSFQRALELDHKNAQAqqefknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRY 277
Cdd:COG2956 161 DEAIEALEKALKLDPDCARA------------LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP 228
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 564374216 278 PEAQFVASDILRMDSTNADALYVRGLCLYYEDcIEKAVQFFVQALR 323
Cdd:COG2956 229 EEALELLRKALELDPSDDLLLALADLLERKEG-LEAALALLERQLR 273
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
104-438 |
1.51e-13 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 73.48 E-value: 1.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 104 LEDEEAKREAESFKEQGNAYYAKKDYNEAYNYYTKAIdMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRG 183
Cdd:TIGR00990 118 LSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAI-ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 184 HLREGKCHLSLGNamaacrsFQRALeLDHKNAQAQQEFKNANAVMEYEkiaevdfekRDFRKvvFCMDRALEfapachrf 263
Cdd:TIGR00990 197 LNRRANAYDGLGK-------YADAL-LDLTASCIIDGFRNEQSAQAVE---------RLLKK--FAESKAKE-------- 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 264 kILKAEclamLGRYPEAQFVAS--DILRM--------DSTNADA--------LYVRGLCLYYEDCIEKAVQFFVQALRMA 325
Cdd:TIGR00990 250 -ILETK----PENLPSVTFVGNylQSFRPkprpagleDSNELDEetgngqlqLGLKSPESKADESYEEAARAFEKALDLG 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 326 PDHEKACLACRNAKALKakkedgnkaFKEGNYKLAYELYTEALGIDPNNIKTnaklYCNRGTVNSKLKKLEDAIEDCTNA 405
Cdd:TIGR00990 325 KLGEKEAIALNLRGTFK---------CLKGKHLEALADLSKSIELDPRVTQS----YIKRASMNLELGDPDKAEEDFDKA 391
|
330 340 350
....*....|....*....|....*....|...
gi 564374216 406 VKLDDTYVKAYLRRAQCYMDTEQFEEAVRDYEK 438
Cdd:TIGR00990 392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424
|
|
| PRK14278 |
PRK14278 |
chaperone protein DnaJ; Provisional |
465-542 |
1.85e-13 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237654 [Multi-domain] Cd Length: 378 Bit Score: 72.01 E-value: 1.85e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564374216 465 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDSGQDLDEEG 542
Cdd:PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQ------EKFKEISVAYEVLSDPEKRRIVDLGGDPLESA 74
|
|
| CbpA |
COG2214 |
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription]; |
462-533 |
2.84e-13 |
|
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
Pssm-ID: 441816 [Multi-domain] Cd Length: 91 Bit Score: 65.51 E-value: 2.84e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564374216 462 SKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHsgasAEVQKEEEKKFKEVGEAFTILSDPKKKTRYD 533
Cdd:COG2214 2 PDLKDHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRG----GELKALAEELFQRLNEAYEVLSDPERRAEYD 69
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
294-441 |
7.63e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 71.18 E-value: 7.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 294 NADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLACRNAKALKAKKED-----GNKAFKEGNYKLAYELYTEAL 368
Cdd:COG3914 60 LALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEalfnlGNLLLALGRLEEALAALRRAL 139
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564374216 369 GIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFEEAVRDYEKVYQ 441
Cdd:COG3914 140 ALNPDF----AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
107-291 |
1.10e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.60 E-value: 1.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 107 EEAKREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLR 186
Cdd:COG2956 104 ELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 187 EGKCHLSLGNAMAACRSFQRALELDHKNAQAqqefknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPAcHRFKIL 266
Cdd:COG2956 184 LAELYLEQGDYEEAIAALERALEQDPDYLPA------------LPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLA 250
|
170 180
....*....|....*....|....*
gi 564374216 267 KAECLAMLGRYPEAQFVASDILRMD 291
Cdd:COG2956 251 LADLLERKEGLEAALALLERQLRRH 275
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
113-332 |
1.17e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 70.79 E-value: 1.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 113 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYY------------GNRAATLMMLGRFREALGDAQQSVRLDDSF 180
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAaalglallllaaLAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 181 VRGHLREgkcHLSLGNAMAACRSFQRALELDHKNAQAqqefknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPAC 260
Cdd:COG3914 81 LELAALL---LQALGRYEEALALYRRALALNPDNAEA------------LFNLGNLLLALGRLEEALAALRRALALNPDF 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564374216 261 HRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKAC 332
Cdd:COG3914 146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
338-438 |
1.30e-12 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 69.43 E-value: 1.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 338 AKALKAKkedGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYL 417
Cdd:PLN03088 2 AKDLEDK---AKEAFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74
|
90 100
....*....|....*....|.
gi 564374216 418 RRAQCYMDTEQFEEAVRDYEK 438
Cdd:PLN03088 75 RKGTACMKLEEYQTAKAALEK 95
|
|
| PRK14286 |
PRK14286 |
chaperone protein DnaJ; Provisional |
465-546 |
1.32e-12 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172774 [Multi-domain] Cd Length: 372 Bit Score: 69.63 E-value: 1.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 465 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGasaevQKEEEKKFKEVGEAFTILSDPKKKTRYDSgqdLDEEGMN 544
Cdd:PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG-----NKESEEKFKEATEAYEILRDPKKRQAYDQ---FGKAGVN 75
|
..
gi 564374216 545 MG 546
Cdd:PRK14286 76 AG 77
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
93-469 |
1.48e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 70.50 E-value: 1.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 93 DVVMAATEPELLEDEEAkreAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQ 172
Cdd:TIGR02917 108 QVLDELPGKTLLDDEGA---AELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDE 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 173 SVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAqqEFKNANAVMEYEKIAEVDFEkrdfrkvvfcMDR 252
Cdd:TIGR02917 185 VLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAV--LLALATILIEAGEFEEAEKH----------ADA 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 253 ALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKA- 331
Cdd:TIGR02917 253 LLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQAr 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 332 -CLAC---RNAKALKAKKE-----------------DGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLycnrGTVNS 390
Cdd:TIGR02917 333 rLLASiqlRLGRVDEAIATlspalgldpddpaalslLGEAYLALGDFEKAAEYLAKATELDPENAAARTQL----GISKL 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 391 KLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFEEAVRDYEKVYQTEKTKEHKQLLKNA--QLELKKSKRKDYY 468
Cdd:TIGR02917 409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAiyLGKGDLAKAREAF 488
|
.
gi 564374216 469 K 469
Cdd:TIGR02917 489 E 489
|
|
| PRK14285 |
PRK14285 |
chaperone protein DnaJ; Provisional |
464-533 |
1.59e-12 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172773 [Multi-domain] Cd Length: 365 Bit Score: 69.25 E-value: 1.59e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 464 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGasaevQKEEEKKFKEVGEAFTILSDPKKKTRYD 533
Cdd:PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKG-----NKEAESIFKEATEAYEVLIDDNKRAQYD 66
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
113-242 |
3.56e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 66.57 E-value: 3.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 113 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHL 192
Cdd:COG0457 76 AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE 155
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 564374216 193 SLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVMEYEKIAEVDFEKRD 242
Cdd:COG0457 156 KLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQ 205
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
279-441 |
7.63e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 68.10 E-value: 7.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 279 EAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLACRNAKALKAKKEDGNKAFKEGNYK 358
Cdd:COG3914 16 ALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 359 LAYELYTEALGIDPNniktNAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFEEAVRDYEK 438
Cdd:COG3914 96 EALALYRRALALNPD----NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRR 171
|
...
gi 564374216 439 VYQ 441
Cdd:COG3914 172 ALE 174
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
113-219 |
2.35e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.56 E-value: 2.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 113 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHL 192
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96
|
90 100
....*....|....*....|....*..
gi 564374216 193 SLGNAMAACRSFQRALELDHKNAQAQQ 219
Cdd:COG4235 97 QQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| PRK14296 |
PRK14296 |
chaperone protein DnaJ; Provisional |
463-533 |
2.37e-11 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237666 [Multi-domain] Cd Length: 372 Bit Score: 65.74 E-value: 2.37e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564374216 463 KRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD 533
Cdd:PRK14296 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAH------DKMVEINEAADVLLDKDKRKQYD 66
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
111-240 |
2.96e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 61.36 E-value: 2.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 111 REAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKC 190
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 564374216 191 HLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVMEYEKIAEVDFEK 240
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131
|
|
| DjlA |
COG1076 |
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones]; |
466-527 |
5.00e-11 |
|
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440694 [Multi-domain] Cd Length: 75 Bit Score: 58.65 E-value: 5.00e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564374216 466 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRH-SGASAEVQKEEEKKFKEVGEAFTILSDPK 527
Cdd:COG1076 5 DAFELLGLPPDADDAELKRAYRKLQREHHPDRLaAGLPEEEQRLALQKAAAINEAYETLKDPR 67
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
107-214 |
5.55e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.59 E-value: 5.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 107 EEAKREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLR 186
Cdd:COG4783 32 ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLR 111
|
90 100
....*....|....*....|....*...
gi 564374216 187 EGKCHLSLGNAMAACRSFQRALELDHKN 214
Cdd:COG4783 112 LARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
70-211 |
8.55e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 60.74 E-value: 8.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 70 ALHRRPPTRLFGPGGKMAATAECDVVMAATEPELLEDEEAKREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASY 149
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564374216 150 YGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELD 211
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
205-376 |
1.59e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.86 E-value: 1.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 205 QRALELDHKNAQAQQEFKNANAVMEYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVA 284
Cdd:COG3914 56 AAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAAL 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 285 SDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLACrnAKALkakkedgnkaFKEGNYKLAYELY 364
Cdd:COG3914 136 RRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNL--GNAL----------QDLGRLEEAIAAY 203
|
170
....*....|..
gi 564374216 365 TEALGIDPNNIK 376
Cdd:COG3914 204 RRALELDPDNAD 215
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
295-441 |
5.42e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.89 E-value: 5.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 295 ADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDhekaclacrNAKALKAKkedGNKAFKEGNYKLAYELYTEALGIDPNN 374
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPD---------NPEAFALL---GEILLQLGDLDEAIVLLHEALELDPDE 71
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564374216 375 iktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFEEAVRDYEKVYQ 441
Cdd:COG4783 72 ----PEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
122-211 |
5.99e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 56.33 E-value: 5.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 122 AYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALgDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAAC 201
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|
gi 564374216 202 RSFQRALELD 211
Cdd:COG3063 80 AYLERALELD 89
|
|
| PRK14300 |
PRK14300 |
chaperone protein DnaJ; Provisional |
465-554 |
1.32e-09 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172788 [Multi-domain] Cd Length: 372 Bit Score: 60.03 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 465 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS-GQDLDEE-- 541
Cdd:PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAE------KKFKEINAAYDVLKDEQKRAAYDRfGHDAFQNqq 76
|
90
....*....|....*....
gi 564374216 542 ----GMNMGDF--DANNIF 554
Cdd:PRK14300 77 srggGGNHGGFhpDINDIF 95
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
120-493 |
1.53e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 60.87 E-value: 1.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 120 GNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNama 199
Cdd:TIGR02917 370 GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ--- 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 200 acrsFQRALEldhknAQAQQEFKNANAVMEYEKIAEVDFEKRDFRKVVFCMDRALEFAPAchrfkilkaeclamlgrYPE 279
Cdd:TIGR02917 447 ----FDKALA-----AAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-----------------FFP 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 280 AqfvASDILRMDstnadalyvrglclYYEDCIEKAVQFFVQALRMAPDHEKACLACRNAKALKAKKEDG----NKAFKE- 354
Cdd:TIGR02917 501 A---AANLARID--------------IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAvawlEKAAELn 563
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 355 -----------------GNYKLAYELYTEALgidpNNIKTNAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYL 417
Cdd:TIGR02917 564 pqeiepalalaqyylgkGQLKKALAILNEAA----DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALL 639
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564374216 418 RRAQCYMDTEQFEEAVRDYEKVYQTEKTKEHKQLLKnAQLELKKSKRKDYYKILgvdknaseDEIKKAYRKRALMH 493
Cdd:TIGR02917 640 LLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL-AQLLLAAKRTESAKKIA--------KSLQKQHPKAALGF 706
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
128-235 |
4.94e-09 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 58.26 E-value: 4.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 128 DYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAAcrsfQRA 207
Cdd:PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA----KAA 92
|
90 100
....*....|....*....|....*...
gi 564374216 208 LELDHKNAQAQQEFKNANAVMEyEKIAE 235
Cdd:PLN03088 93 LEKGASLAPGDSRFTKLIKECD-EKIAE 119
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
351-441 |
7.00e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.25 E-value: 7.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 351 AFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEdCTNAVKLDDTYVKAYLRRAQCYMDTEQFE 430
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDN----ADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD 76
|
90
....*....|.
gi 564374216 431 EAVRDYEKVYQ 441
Cdd:COG3063 77 EALAYLERALE 87
|
|
| PRK14288 |
PRK14288 |
molecular chaperone DnaJ; |
467-548 |
9.27e-09 |
|
molecular chaperone DnaJ;
Pssm-ID: 172776 [Multi-domain] Cd Length: 369 Bit Score: 57.39 E-value: 9.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 467 YYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGasaevQKEEEKKFKEVGEAFTILSDPKKKTRYD--SGQDLDEEGMN 544
Cdd:PRK14288 5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAG-----DKEAEEKFKLINEAYGVLSDEKKRALYDryGKKGLNQAGAS 79
|
....
gi 564374216 545 MGDF 548
Cdd:PRK14288 80 QSDF 83
|
|
| PRK10266 |
PRK10266 |
curved DNA-binding protein; |
465-533 |
1.07e-08 |
|
curved DNA-binding protein;
Pssm-ID: 182347 [Multi-domain] Cd Length: 306 Bit Score: 56.75 E-value: 1.07e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564374216 465 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekkFKEVGEAFTILSDPKKKTRYD 533
Cdd:PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAR------FKEVAEAWEVLSDEQRRAEYD 66
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
113-224 |
1.12e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 55.69 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 113 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHL 192
Cdd:COG4785 107 AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER 186
|
90 100 110
....*....|....*....|....*....|....*
gi 564374216 193 SLGN--AMAACRSF-QRALELDHKNAQAQQEFKNA 224
Cdd:COG4785 187 KLDPekALALLLEDwATAYLLQGDTEEARELFKLA 221
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
224-374 |
1.12e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.04 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 224 ANAVMEYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGL 303
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564374216 304 CLYYEDCIEKAVQFFVQALRMAPDHEKACLacRNAKALKAKkedgnkafkeGNYKLAYELYTEALGIDPNN 374
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYL--RLARAYRAL----------GRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
338-439 |
3.39e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.50 E-value: 3.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 338 AKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYL 417
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN----PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARL 76
|
90 100
....*....|....*....|..
gi 564374216 418 RRAQCYMDTEQFEEAVRDYEKV 439
Cdd:COG4783 77 NLGLALLKAGDYDEALALLEKA 98
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
199-331 |
7.39e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.55 E-value: 7.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 199 AACRSFQRALELDHKNAQAqqefknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYP 278
Cdd:COG4235 1 EAIARLRQALAANPNDAEG------------WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTE 68
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 564374216 279 EAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKA 331
Cdd:COG4235 69 EAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
87-217 |
9.07e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 53.00 E-value: 9.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 87 AATAECDVVMAATEPELLEDEEAKR-EAESFKEQGNAYYAKKDYNEAYNYYTkaidMCPKNASYYGNRAATLMMLGRFRE 165
Cdd:COG4785 16 AAAASKAAILLAALLFAAVLALAIAlADLALALAAAALAAAALAAERIDRAL----ALPDLAQLYYERGVAYDSLGDYDL 91
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 564374216 166 ALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQA 217
Cdd:COG4785 92 AIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
294-444 |
9.86e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 51.88 E-value: 9.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 294 NADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPN 373
Cdd:COG5010 7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564374216 374 NiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFEEAVRDYEKVYQTEK 444
Cdd:COG5010 87 N----PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
348-439 |
1.08e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.77 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 348 GNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTE 427
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDN----ADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99
|
90
....*....|..
gi 564374216 428 QFEEAVRDYEKV 439
Cdd:COG4235 100 DYAEAIAAWQKL 111
|
|
| djlA |
PRK09430 |
co-chaperone DjlA; |
465-496 |
1.21e-07 |
|
co-chaperone DjlA;
Pssm-ID: 236512 [Multi-domain] Cd Length: 267 Bit Score: 53.28 E-value: 1.21e-07
10 20 30
....*....|....*....|....*....|....
gi 564374216 465 KDYYKILGVDKNASEDEIKKAYRKraLM--HHPD 496
Cdd:PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRK--LMseHHPD 231
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
245-374 |
5.66e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.85 E-value: 5.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 245 KVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRM 324
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 564374216 325 APDHEKAcLACRnakalkakkedGNKAFKEGNYKLAYELYTEALGIDPNN 374
Cdd:COG4235 81 DPDNPEA-LYLL-----------GLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
128-346 |
6.04e-07 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 52.29 E-value: 6.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 128 DYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRA 207
Cdd:TIGR00990 380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 208 LeldhknaqaqQEFKNANAVMEYekIAEVDFEKRDFRKVVFCMDRALEFA----PACHRFKILKAECLAML---GRYPEA 280
Cdd:TIGR00990 460 K----------KNFPEAPDVYNY--YGELLLDQNKFDEAIEKFDTAIELEketkPMYMNVLPLINKALALFqwkQDFIEA 527
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564374216 281 QFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLACRNAKALKAKKE 346
Cdd:TIGR00990 528 ENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQ 593
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
188-464 |
8.93e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.01 E-value: 8.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 188 GKCHLSLGNAMAACRSFQRALELDHKNAQA----------QQEF---------------KNANAVMEYEKIAEVDFEKRD 242
Cdd:TIGR02917 63 GKIYLALGDYAAAEKELRKALSLGYPKNQVlpllarayllQGKFqqvldelpgktllddEGAAELLALRGLAYLGLGQLE 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 243 FRKVVFcmDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQAL 322
Cdd:TIGR02917 143 LAQKSY--EQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAI 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 323 RMAPDHEKACLAcrnakalkakkeDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNaklYCnRGTVNSKLKKLEDAIEDC 402
Cdd:TIGR02917 221 ALRPNNIAVLLA------------LATILIEAGEFEEAEKHADALLKKAPNSPLAH---YL-KALVDFQKKNYEDARETL 284
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564374216 403 TNAVKLDDTYVKA-YLRRAQCYM--DTEQFEEAVRDYEKvyQTEKTKEHKQLLKNAQLELKKSKR 464
Cdd:TIGR02917 285 QDALKSAPEYLPAlLLAGASEYQlgNLEQAYQYLNQILK--YAPNSHQARRLLASIQLRLGRVDE 347
|
|
| C39_PA2778_fam |
NF033920 |
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ... |
82-176 |
5.63e-06 |
|
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).
Pssm-ID: 468245 [Multi-domain] Cd Length: 255 Bit Score: 47.93 E-value: 5.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 82 PGGKMAATAECD-VVMAATEPELLEDEEAKREA-ESFKEQ-----------GNAYYAKKDYNEAYNYYTKAIDMCPKNAS 148
Cdd:NF033920 146 PPGQLPATADPLaYLRAAQDLEQTGQPEAALAAyQTATKRwpdswlayfglGNAAYAAGDYAAAAAAFRQAVERHPDSAA 225
|
90 100
....*....|....*....|....*...
gi 564374216 149 YYGNRAATLMMLGRFREALGDAQQSVRL 176
Cdd:NF033920 226 AWNNLAYALAAQGCTAQARAAAECALAL 253
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
113-220 |
6.50e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 47.69 E-value: 6.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 113 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHL 192
Cdd:COG0457 110 AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALA 189
|
90 100
....*....|....*....|....*...
gi 564374216 193 SLGNAMAACRSFQRALELDHKNAQAQQE 220
Cdd:COG0457 190 LAAAEVLLALLLALEQALRKKLAILTLA 217
|
|
| ZUO1 |
COG5269 |
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ... |
458-534 |
1.58e-05 |
|
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 227594 [Multi-domain] Cd Length: 379 Bit Score: 47.33 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 458 ELKKSKRKDYYKILGVDK---NASEDEIKKAYRKRALMHHPDRhsgASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDS 534
Cdd:COG5269 36 DFKNWKKVDLYALLGLSKyrtKAIPPQILKAHKKKVYKYHPDK---TAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS 112
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
120-161 |
1.85e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 42.07 E-value: 1.85e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 564374216 120 GNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLG 161
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
113-146 |
2.41e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 41.28 E-value: 2.41e-05
10 20 30
....*....|....*....|....*....|....
gi 564374216 113 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKN 146
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
389-533 |
5.30e-05 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 46.32 E-value: 5.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 389 NSKLKKLEDAIEDCTnavkLDDTYVKAYLRRAQcymdtEQFEEAVRDYEKVYQTEKTkehkqllknaqLELKKSKrkdYY 468
Cdd:PTZ00341 520 NEEQQTADEHVEEPT----IAEEHVEEEISTAE-----EHIEEPASDVQQDSEAAPT-----------IEIPDTL---FY 576
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564374216 469 KILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAevqkeeEKKFKEVGEAFTILSDPKKKTRYD 533
Cdd:PTZ00341 577 DILGVGVNADMKEISERYFKLAENYYPPKRSGNEG------FHKFKKINEAYQILGDIDKKKMYN 635
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
113-146 |
9.13e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 39.71 E-value: 9.13e-05
10 20 30
....*....|....*....|....*....|....
gi 564374216 113 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKN 146
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
197-461 |
9.48e-05 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 44.49 E-value: 9.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 197 AMAACRSFQRALeldhKNAQAQQEFKNANAVME---YEKiAEVDFEKrdfrkvvfcMDRALEFAPACHRFKILKAECLAM 273
Cdd:COG4105 16 LLAGCSSFKKAL----KSWDAEELYEEAKEALEkgdYEK-AIKLFEE---------LEPRYPGSPYAEQAQLMLAYAYYK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 274 LGRYPEAQFVASDILRM--DSTNAD-ALYVRGLCLYYED--------CIEKAVQFFVQALRMAPDHEKAclacrnakalk 342
Cdd:COG4105 82 QGDYEEAIAAADRFIKLypNSPNADyAYYLRGLSYYEQSpdsdrdqtSTRKAIEAFQELINRYPDSEYA----------- 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 343 akkEDGNKAFKEGNYKLA-YELYtealgidpnniktNAKLYCNRGTVNSKLKKLEDAIEDC--TNAVKlddtyvKAYLRR 419
Cdd:COG4105 151 ---EDAKKRIDELRDKLArKELE-------------VARYYLKRGAYVAAINRFQNVLEDYpdTPAVE------EALYLL 208
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 564374216 420 AQCYMDTEQFEEAvRDYEKVYQ-----TEKTKEHKQLLKNAQLELKK 461
Cdd:COG4105 209 VEAYYALGRYDEA-QDAAAVLGknypdSPYLKDAEKLLKKIGKELKK 254
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
360-439 |
1.94e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.53 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 360 AYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFEEAVRDYEKV 439
Cdd:COG4235 2 AIARLRQALAANPND----AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA 77
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
275-375 |
2.66e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 43.92 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 275 GRYPEAQFVASDILRMDSTNADAlyVRGLC-LYYEDCIEKAVQFfVQALrmAPDHEKACLACRNAKALKAKKEDGNKAFK 353
Cdd:PRK11447 399 KDYAAAERYYQQALRMDPGNTNA--VRGLAnLYRQQSPEKALAF-IASL--SASQRRSIDDIERSLQNDRLAQQAEALEN 473
|
90 100
....*....|....*....|..
gi 564374216 354 EGNYKLAYELYTEALGIDPNNI 375
Cdd:PRK11447 474 QGKWAQAAELQRQRLALDPGSV 495
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
251-372 |
2.92e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.48 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 251 DRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEK 330
Cdd:COG5010 44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN 123
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 564374216 331 ACLACRNAKAlkakkedgnkafKEGNYKLAYELYTEALGIDP 372
Cdd:COG5010 124 AYSNLAALLL------------SLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
113-182 |
3.37e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.77 E-value: 3.37e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 113 AESFKEQGNAYYAKKDYNEAYNYyTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVR 182
Cdd:COG3063 26 ADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
379-412 |
3.99e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.79 E-value: 3.99e-04
10 20 30
....*....|....*....|....*....|....
gi 564374216 379 AKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTY 412
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
350-442 |
4.63e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.97 E-value: 4.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 350 KAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYcNRGTVNSKLKKLEDAIEDCTNAVKL---DDTYVKAYLRRAQCYMDT 426
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALY-WLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLEL 80
|
90
....*....|....*.
gi 564374216 427 EQFEEAVRDYEKVYQT 442
Cdd:COG1729 81 GDYDKARATLEELIKK 96
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
122-219 |
9.75e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 9.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 122 AYYAKKDYNEAYNYYTKAIDMCPK-----NASYYgnRAATLMMLGRFREALGDAQQSVRL--DDSFV-RGHLREGKCHLS 193
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNsplapDALYW--LGEAYYALGDYDEAAEAFEKLLKRypDSPKApDALLKLGLSYLE 79
|
90 100
....*....|....*....|....*.
gi 564374216 194 LGNAMAACRSFQRALELDHKNAQAQQ 219
Cdd:COG1729 80 LGDYDKARATLEELIKKYPDSEAAKE 105
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
270-373 |
1.16e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.23 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 270 CLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFvQALRMAPDhekaclacrNAKALKAKkedGN 349
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALE-KALKLDPN---------NAEALLNL---AE 67
|
90 100
....*....|....*....|....
gi 564374216 350 KAFKEGNYKLAYELYTEALGIDPN 373
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPS 91
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
379-412 |
1.24e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.66 E-value: 1.24e-03
10 20 30
....*....|....*....|....*....|....
gi 564374216 379 AKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTY 412
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
135-167 |
1.31e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 36.37 E-value: 1.31e-03
10 20 30
....*....|....*....|....*....|...
gi 564374216 135 YYTKAIDMCPKNASYYGNRAATLMMLGRFREAL 167
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
132-291 |
1.49e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.56 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 132 AYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELD 211
Cdd:COG5010 5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 212 HKNAQAqqefknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMD 291
Cdd:COG5010 85 PNNPEL------------YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
215-326 |
1.56e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.56 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 215 AQAQQEFKNANAVMEYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDSTN 294
Cdd:COG5010 42 LAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDN 121
|
90 100 110
....*....|....*....|....*....|..
gi 564374216 295 ADALYVRGLCLYYEDCIEKAVQFFVQALRMAP 326
Cdd:COG5010 122 PNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PRK12370 |
PRK12370 |
HilA/EilA family virulence transcriptional regulator; |
189-317 |
2.55e-03 |
|
HilA/EilA family virulence transcriptional regulator;
Pssm-ID: 237080 [Multi-domain] Cd Length: 553 Bit Score: 40.61 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 189 KCHLSLG--------NAM-AACRSFQRALELDHKNAQAQQEFKNANAVMEYEKIAEVDFEKrdfrkvvfcmdrALEFAPA 259
Cdd:PRK12370 303 ECYLSMAqmgifdkqNAMiKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQ------------ANLLSPI 370
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 564374216 260 CHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQF 317
Cdd:PRK12370 371 SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRL 428
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
191-391 |
4.32e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 39.13 E-value: 4.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 191 HLSLGNAMAACRSFQRALE--LDHKNAQAQQEFKNANAVMEYEKIAEVDFEKRDFRKVVFCMDRALEFApachrfkiLKA 268
Cdd:COG4785 9 LLALALAAAAASKAAILLAalLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYY--------ERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 269 ECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLacRNAKALKAKkedg 348
Cdd:COG4785 81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYL--NRGIALYYL---- 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 564374216 349 nkafkeGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSK 391
Cdd:COG4785 155 ------GRYELAIADLEKALELDPNDPERALWLYLAERKLDPE 191
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
113-145 |
5.90e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.81 E-value: 5.90e-03
10 20 30
....*....|....*....|....*....|...
gi 564374216 113 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPK 145
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
295-328 |
6.03e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.73 E-value: 6.03e-03
10 20 30
....*....|....*....|....*....|....
gi 564374216 295 ADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDH 328
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
120-179 |
7.75e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 35.44 E-value: 7.75e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564374216 120 GNAYYAKKDYNEAYNYYTKAIDMC--------PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDS 179
Cdd:pfam13424 10 AAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
106-239 |
9.45e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 38.81 E-value: 9.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374216 106 DEEAKREAESFKEQGNAYY------AKKDYNEAYNYYTKAID---MCPKNASYYGNRAATLMMLGRFREALGDAQQSVRL 176
Cdd:TIGR00990 281 EDSNELDEETGNGQLQLGLkspeskADESYEEAARAFEKALDlgkLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564374216 177 DDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNA-----QAQQEF---KNANAVMEYEKIAEVDFE 239
Cdd:TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPdiyyhRAQLHFikgEFAQAGKDYQKSIDLDPD 431
|
|
| |
