|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10767 |
PRK10767 |
chaperone protein DnaJ; Provisional |
361-453 |
2.41e-21 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 236757 [Multi-domain] Cd Length: 371 Bit Score: 95.21 E-value: 2.41e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 361 SKRkDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTILSDPKKKTRYDS-GQDLD 438
Cdd:PRK10767 2 AKR-DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGdKEAEEK------FKEIKEAYEVLSDPQKRAAYDQyGHAAF 74
|
90
....*....|....*
gi 564374218 439 EEGMNMGDFDANNIF 453
Cdd:PRK10767 75 EQGGGGGGFGGGGGF 89
|
|
| DnaJ_bact |
TIGR02349 |
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ... |
365-451 |
3.13e-21 |
|
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Pssm-ID: 274090 [Multi-domain] Cd Length: 354 Bit Score: 94.59 E-value: 3.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 365 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS-GQDLDEEGM- 442
Cdd:TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAE------EKFKEINEAYEVLSDPEKRAQYDQfGHAGFNGGGg 74
|
90
....*....|...
gi 564374218 443 ----NMGDFDANN 451
Cdd:TIGR02349 75 ggggGFNGFDIGF 87
|
|
| DnaJ |
pfam00226 |
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ... |
365-432 |
4.17e-20 |
|
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.
Pssm-ID: 395170 [Multi-domain] Cd Length: 63 Bit Score: 83.68 E-value: 4.17e-20
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564374218 365 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTILSDPKKKTRYD 432
Cdd:pfam00226 1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGdPEAEEK------FKEINEAYEVLSDPEKRAIYD 63
|
|
| terminal_TopJ |
NF037946 |
terminal organelle assembly protein TopJ; |
361-453 |
7.13e-20 |
|
terminal organelle assembly protein TopJ;
Pssm-ID: 468284 [Multi-domain] Cd Length: 440 Bit Score: 91.81 E-value: 7.13e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 361 SKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS-GQDlDE 439
Cdd:NF037946 2 EEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKAPDAA------EIFAEINEAYEVLSNPEKRANYDKyGHD-GV 74
|
90
....*....|....
gi 564374218 440 EGMNMGDFDANNIF 453
Cdd:NF037946 75 DGEGGFGFDAFDVF 88
|
|
| PRK14289 |
PRK14289 |
molecular chaperone DnaJ; |
363-446 |
2.03e-19 |
|
molecular chaperone DnaJ;
Pssm-ID: 237660 [Multi-domain] Cd Length: 386 Bit Score: 89.89 E-value: 2.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 363 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS-------- 433
Cdd:PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGdKEAE------EKFKEAAEAYDVLSDPDKRSRYDQfghagvgg 77
|
90
....*....|....*.
gi 564374218 434 ---GQDLDEEGMNMGD 446
Cdd:PRK14289 78 aagGGGFSGEGMSMED 93
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
153-382 |
3.43e-19 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 86.60 E-value: 3.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 153 LEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDhekacl 232
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 233 acrNAKALKAKkedGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYV 312
Cdd:COG0457 75 ---DAEALNNL---GLALQALGRYEEALEDYDKALELDPDD----AEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 313 KAYLRRAQCYMDTEQFEEAVRDYEKVYQTEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIK 382
Cdd:COG0457 145 DALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
11-179 |
1.23e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 85.06 E-value: 1.23e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 11 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCH 90
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 91 LSLGNAMAACRSFQRALELDHKNAQAqqefknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECL 170
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEA------------LYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIAL 154
|
....*....
gi 564374218 171 AMLGRYPEA 179
Cdd:COG0457 155 EKLGRYEEA 163
|
|
| PRK14277 |
PRK14277 |
chaperone protein DnaJ; Provisional |
363-447 |
1.36e-18 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184599 [Multi-domain] Cd Length: 386 Bit Score: 87.55 E-value: 1.36e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 363 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekKFKEVGEAFTILSDPKKKTRYDSGQD--LDEE 440
Cdd:PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQ-----KFKEINEAYEILSDPQKRAQYDQFGHaaFDPG 78
|
....*..
gi 564374218 441 GMNMGDF 447
Cdd:PRK14277 79 GFGQGGF 85
|
|
| DnaJ |
COG0484 |
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ... |
365-432 |
2.88e-18 |
|
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440252 [Multi-domain] Cd Length: 139 Bit Score: 81.29 E-value: 2.88e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564374218 365 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTILSDPKKKTRYD 432
Cdd:COG0484 1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGdPEAEEK------FKEINEAYEVLSDPEKRAAYD 63
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
39-267 |
6.14e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 83.13 E-value: 6.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 39 IDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAqq 118
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 119 efknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALY 198
Cdd:COG0457 79 ----------LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 199 VRGLCLYYEDCIEKAVQFFVQAL-RMAPDHEKACLACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEAL 267
Cdd:COG0457 149 NLGIALEKLGRYEEALELLEKLEaAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAA 218
|
|
| PRK14298 |
PRK14298 |
chaperone protein DnaJ; Provisional |
361-454 |
1.68e-17 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184612 [Multi-domain] Cd Length: 377 Bit Score: 84.13 E-value: 1.68e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 361 SKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDSgqdLDEE 440
Cdd:PRK14298 2 ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAE------EKFKEISEAYAVLSDAEKRAQYDR---FGHA 72
|
90
....*....|....
gi 564374218 441 GMNmGDFDANNIFK 454
Cdd:PRK14298 73 GID-NQYSAEDIFR 85
|
|
| PRK14290 |
PRK14290 |
chaperone protein DnaJ; Provisional |
364-453 |
1.84e-17 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172778 [Multi-domain] Cd Length: 365 Bit Score: 83.83 E-value: 1.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 364 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeeKKFKEVGEAFTILSDPKKKTRYDSGQDLD----E 439
Cdd:PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAE----EKFKEISEAYEVLSDPQKRRQYDQTGTVDfgagG 78
|
90
....*....|....*...
gi 564374218 440 EGMNMGDF----DANNIF 453
Cdd:PRK14290 79 SNFNWDNFthfsDINDIF 96
|
|
| PRK14297 |
PRK14297 |
molecular chaperone DnaJ; |
364-432 |
2.54e-17 |
|
molecular chaperone DnaJ;
Pssm-ID: 184611 [Multi-domain] Cd Length: 380 Bit Score: 83.29 E-value: 2.54e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 364 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD 432
Cdd:PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGnKEAE------EKFKEINEAYQVLSDPQKKAQYD 67
|
|
| PRK14295 |
PRK14295 |
molecular chaperone DnaJ; |
364-437 |
4.35e-17 |
|
molecular chaperone DnaJ;
Pssm-ID: 237665 [Multi-domain] Cd Length: 389 Bit Score: 82.97 E-value: 4.35e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564374218 364 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDSGQDL 437
Cdd:PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGdAKAE------ERFKEISEAYDVLSDEKKRKEYDEARSL 77
|
|
| PRK14299 |
PRK14299 |
chaperone protein DnaJ; Provisional |
364-433 |
1.05e-16 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237667 [Multi-domain] Cd Length: 291 Bit Score: 80.37 E-value: 1.05e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 364 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS 433
Cdd:PRK14299 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAE------EKFKEINEAYTVLSDPEKRRIYDT 67
|
|
| PRK14279 |
PRK14279 |
molecular chaperone DnaJ; |
364-455 |
2.10e-16 |
|
molecular chaperone DnaJ;
Pssm-ID: 237655 [Multi-domain] Cd Length: 392 Bit Score: 80.93 E-value: 2.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 364 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDSGQDLDEEG- 441
Cdd:PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGdPAAE------ERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGg 82
|
90 100 110
....*....|....*....|....*....|..
gi 564374218 442 ------------------MNMGDFDANNIFKA 455
Cdd:PRK14279 83 fggrrfdggggfggfgtgGDGAEFNLNDLFDA 114
|
|
| DnaJ |
smart00271 |
DnaJ molecular chaperone homology domain; |
364-427 |
2.88e-16 |
|
DnaJ molecular chaperone homology domain;
Pssm-ID: 197617 [Multi-domain] Cd Length: 60 Bit Score: 72.65 E-value: 2.88e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564374218 364 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeeKKFKEVGEAFTILSDPKK 427
Cdd:smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAE----EKFKEINEAYEVLSDPEK 60
|
|
| PRK14292 |
PRK14292 |
chaperone protein DnaJ; Provisional |
365-453 |
3.23e-16 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237662 [Multi-domain] Cd Length: 371 Bit Score: 79.93 E-value: 3.23e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 365 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekkFKEVGEAFTILSDPKKKTRYDSGQDLDEEGMNM 444
Cdd:PRK14292 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEK------FAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPG 76
|
90
....*....|....*
gi 564374218 445 GD------FDANNIF 453
Cdd:PRK14292 77 GDpfggmgFDPMDIF 91
|
|
| PRK14301 |
PRK14301 |
chaperone protein DnaJ; Provisional |
363-455 |
3.76e-16 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237668 [Multi-domain] Cd Length: 373 Bit Score: 79.79 E-value: 3.76e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 363 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDSgqdLDEEG 441
Cdd:PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDnPEAE------QKFKEAAEAYEVLRDAEKRARYDR---FGHAG 73
|
90
....*....|....*....
gi 564374218 442 MNMGDF-----DANNIFKA 455
Cdd:PRK14301 74 VNGNGGfggfsSAEDIFSH 92
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
79-370 |
5.00e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 78.23 E-value: 5.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 79 FVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAqqefknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPA 158
Cdd:COG2956 7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEA------------HLALGNLYRRRGEYDRAIRIHQKLLERDPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 159 CHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLacrnak 238
Cdd:COG2956 75 RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYC------ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 239 alkakkEDGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRR 318
Cdd:COG2956 149 ------ELAELYLEQGDYDEAIEALEKALKLDPDC----ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL 218
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 564374218 319 AQCYMDTEQFEEAVRDYEKVYqtEKTKEHKQLLKNAQLELKKSKRKDYYKIL 370
Cdd:COG2956 219 AELYEKLGDPEEALELLRKAL--ELDPSDDLLLALADLLERKEGLEAALALL 268
|
|
| PRK14287 |
PRK14287 |
chaperone protein DnaJ; Provisional |
363-453 |
5.14e-16 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237659 [Multi-domain] Cd Length: 371 Bit Score: 79.28 E-value: 5.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 363 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekkFKEVGEAFTILSDPKKKTRYDSGQDLDEE-- 440
Cdd:PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDK------FKEVKEAYDTLSDPQKKAHYDQFGHTDPNqg 76
|
90
....*....|....*.
gi 564374218 441 --GMNMGDFDA-NNIF 453
Cdd:PRK14287 77 fgGGGAGDFGGfSDIF 92
|
|
| PRK14291 |
PRK14291 |
chaperone protein DnaJ; Provisional |
363-452 |
5.85e-16 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237661 [Multi-domain] Cd Length: 382 Bit Score: 79.43 E-value: 5.85e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 363 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD-------SGQ 435
Cdd:PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAE------EKFKEINEAYQVLSDPEKRKLYDqfghaafSGS 75
|
90
....*....|....*...
gi 564374218 436 DLDEEGMN-MGDFDANNI 452
Cdd:PRK14291 76 GQQQQGQEgFSDFGGGNI 93
|
|
| PRK14280 |
PRK14280 |
molecular chaperone DnaJ; |
361-447 |
6.06e-16 |
|
molecular chaperone DnaJ;
Pssm-ID: 237656 [Multi-domain] Cd Length: 376 Bit Score: 79.38 E-value: 6.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 361 SKRkDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD------SG 434
Cdd:PRK14280 2 AKR-DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGAD------EKFKEISEAYEVLSDDQKRAQYDqfghagPN 74
|
90
....*....|...
gi 564374218 435 QDLDEEGMNMGDF 447
Cdd:PRK14280 75 QGFGGGGFGGGDF 87
|
|
| PRK14276 |
PRK14276 |
chaperone protein DnaJ; Provisional |
364-432 |
6.38e-16 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237653 [Multi-domain] Cd Length: 380 Bit Score: 79.36 E-value: 6.38e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564374218 364 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD 432
Cdd:PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAE------EKYKEVQEAYETLSDPQKRAAYD 66
|
|
| PRK14294 |
PRK14294 |
chaperone protein DnaJ; Provisional |
361-432 |
7.50e-16 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237664 [Multi-domain] Cd Length: 366 Bit Score: 79.04 E-value: 7.50e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564374218 361 SKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTILSDPKKKTRYD 432
Cdd:PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGdKEAEEL------FKEAAEAYEVLSDPKKRGIYD 67
|
|
| PRK14283 |
PRK14283 |
chaperone protein DnaJ; Provisional |
363-454 |
1.02e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184604 [Multi-domain] Cd Length: 378 Bit Score: 78.71 E-value: 1.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 363 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDSgqdLDEEGM 442
Cdd:PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAE------EKFKEISEAYAVLSDDEKRQRYDQ---FGHAGM 74
|
90
....*....|..
gi 564374218 443 NmgDFDANNIFK 454
Cdd:PRK14283 75 D--GFSQEDIFN 84
|
|
| termin_org_DnaJ |
TIGR03835 |
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ ... |
363-455 |
3.61e-15 |
|
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274808 [Multi-domain] Cd Length: 871 Bit Score: 78.32 E-value: 3.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 363 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS-GQD-LDEE 440
Cdd:TIGR03835 1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAA------SIFAEINEANDVLSNPKKRANYDKyGHDgVDRE 74
|
90
....*....|....*
gi 564374218 441 GMNmgDFDAnNIFKA 455
Cdd:TIGR03835 75 DDF--DFQA-DVFNS 86
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
170-346 |
4.65e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 77.73 E-value: 4.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 170 LAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLACrnakalkakkedGNK 249
Cdd:COG3914 88 LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNL------------GEA 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 250 AFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFE 329
Cdd:COG3914 156 LRRLGRLEEAIAALRRALELDPDN----AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWE 231
|
170
....*....|....*..
gi 564374218 330 EAVRDYEKVYQTEKTKE 346
Cdd:COG3914 232 VYDRFEELLAALARGPS 248
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
19-228 |
5.09e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 75.15 E-value: 5.09e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 19 GNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMA 98
Cdd:COG2956 49 GNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEK 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 99 ACRSFQRALELDHKNAQAQQEfknanavmeyekIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPE 178
Cdd:COG2956 129 AIEVLERLLKLGPENAHAYCE------------LAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 564374218 179 AQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHE 228
Cdd:COG2956 197 AIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD 246
|
|
| PRK14282 |
PRK14282 |
chaperone protein DnaJ; Provisional |
363-432 |
6.20e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184603 [Multi-domain] Cd Length: 369 Bit Score: 75.98 E-value: 6.20e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 363 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeeKKFKEVGEAFTILSDPKKKTRYD 432
Cdd:PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAE----QKFKEIQEAYEVLSDPQKRAMYD 68
|
|
| PRK14284 |
PRK14284 |
chaperone protein DnaJ; Provisional |
365-432 |
6.56e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237658 [Multi-domain] Cd Length: 391 Bit Score: 76.42 E-value: 6.56e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564374218 365 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD 432
Cdd:PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGdAEAE------KRFKEVSEAYEVLSDAQKRESYD 64
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
10-144 |
8.86e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 73.89 E-value: 8.86e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 10 REAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKC 89
Cdd:COG0457 40 DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLA 119
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 564374218 90 HLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVMEYEKIAEVDFEKRDFRK 144
Cdd:COG0457 120 LLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
|
| DnaJ |
cd06257 |
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ... |
365-424 |
9.76e-15 |
|
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Pssm-ID: 99751 [Multi-domain] Cd Length: 55 Bit Score: 68.34 E-value: 9.76e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 365 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekKFKEVGEAFTILSD 424
Cdd:cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEE-----KFKEINEAYEVLSD 55
|
|
| PRK14281 |
PRK14281 |
chaperone protein DnaJ; Provisional |
363-455 |
1.90e-14 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237657 [Multi-domain] Cd Length: 397 Bit Score: 74.84 E-value: 1.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 363 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGAS-AEvqkeeeKKFKEVGEAFTILSDPKKKTRYD--------- 432
Cdd:PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKeAE------EHFKEVNEAYEVLSNDDKRRRYDqfghagvgs 75
|
90 100
....*....|....*....|...
gi 564374218 433 SGQDLDEEGMNMGDFDANNIFKA 455
Cdd:PRK14281 76 SAASGGGPGYGGGGGDFNDIFSA 98
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
235-340 |
2.21e-14 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 72.26 E-value: 2.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 235 RNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKA 314
Cdd:COG4785 68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL----AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143
|
90 100
....*....|....*....|....*.
gi 564374218 315 YLRRAQCYMDTEQFEEAVRDYEKVYQ 340
Cdd:COG4785 144 YLNRGIALYYLGRYELAIADLEKALE 169
|
|
| PRK14293 |
PRK14293 |
molecular chaperone DnaJ; |
365-447 |
4.30e-14 |
|
molecular chaperone DnaJ;
Pssm-ID: 237663 [Multi-domain] Cd Length: 374 Bit Score: 73.49 E-value: 4.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 365 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD-------SG--- 434
Cdd:PRK14293 4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAE------DRFKEINRAYEVLSDPETRARYDqfgeagvSGaag 77
|
90
....*....|....
gi 564374218 435 -QDLDeegmNMGDF 447
Cdd:PRK14293 78 fPDMG----DMGGF 87
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
16-193 |
7.28e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.87 E-value: 7.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 16 KEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGN 95
Cdd:COG3914 82 ELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGR 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 96 AMAACRSFQRALELDHKNAQAQQEfknanavmeyekIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGR 175
Cdd:COG3914 162 LEEAIAALRRALELDPDNAEALNN------------LGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACD 229
|
170
....*....|....*...
gi 564374218 176 YPEAQFVASDILRMDSTN 193
Cdd:COG3914 230 WEVYDRFEELLAALARGP 247
|
|
| SEC63 |
COG5407 |
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ... |
365-430 |
8.46e-14 |
|
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 444165 [Multi-domain] Cd Length: 61 Bit Score: 65.79 E-value: 8.46e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564374218 365 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTILSDPKKKTR 430
Cdd:COG5407 1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDRNKGdPKAE------ERFKEINEAYELLSDAEKRAR 61
|
|
| CbpA |
COG2214 |
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription]; |
361-432 |
1.01e-13 |
|
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
Pssm-ID: 441816 [Multi-domain] Cd Length: 91 Bit Score: 66.67 E-value: 1.01e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564374218 361 SKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHsgasAEVQKEEEKKFKEVGEAFTILSDPKKKTRYD 432
Cdd:COG2214 2 PDLKDHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRG----GELKALAEELFQRLNEAYEVLSDPERRAEYD 69
|
|
| PRK14278 |
PRK14278 |
chaperone protein DnaJ; Provisional |
364-441 |
1.01e-13 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237654 [Multi-domain] Cd Length: 378 Bit Score: 72.39 E-value: 1.01e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564374218 364 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDSGQDLDEEG 441
Cdd:PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQ------EKFKEISVAYEVLSDPEKRRIVDLGGDPLESA 74
|
|
| PTZ00037 |
PTZ00037 |
DnaJ_C chaperone protein; Provisional |
364-453 |
1.14e-13 |
|
DnaJ_C chaperone protein; Provisional
Pssm-ID: 240236 [Multi-domain] Cd Length: 421 Bit Score: 72.55 E-value: 1.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 364 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRhsGASAEvqkeeekKFKEVGEAFTILSDPKKKTRYDsgqDLDEEGM- 442
Cdd:PTZ00037 28 EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDK--GGDPE-------KFKEISRAYEVLSDPEKRKIYD---EYGEEGLe 95
|
90
....*....|..
gi 564374218 443 -NMGDFDANNIF 453
Cdd:PTZ00037 96 gGEQPADASDLF 107
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
19-157 |
1.48e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.10 E-value: 1.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 19 GNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMA 98
Cdd:COG3914 119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 564374218 99 ACRSFQRALELDHKNAQAQQefknaNAVMEYEKIAEVDFEKRDFRKVVFCMDRALEFAP 157
Cdd:COG3914 199 AIAAYRRALELDPDNADAHS-----NLLFALRQACDWEVYDRFEELLAALARGPSELSP 252
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
7-116 |
2.30e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 69.17 E-value: 2.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 7 RRSREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLRE 86
Cdd:COG4785 68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147
|
90 100 110
....*....|....*....|....*....|
gi 564374218 87 GKCHLSLGNAMAACRSFQRALELDHKNAQA 116
Cdd:COG4785 148 GIALYYLGRYELAIADLEKALELDPNDPER 177
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
193-340 |
3.08e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 71.95 E-value: 3.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 193 NADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLACRNAKALKAKKED-----GNKAFKEGNYKLAYELYTEAL 267
Cdd:COG3914 60 LALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEalfnlGNLLLALGRLEEALAALRRAL 139
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564374218 268 GIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFEEAVRDYEKVYQ 340
Cdd:COG3914 140 ALNPDF----AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
12-231 |
4.30e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 71.56 E-value: 4.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 12 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYY------------GNRAATLMMLGRFREALGDAQQSVRLDDSF 79
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAaalglallllaaLAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 80 VRGHLREgkcHLSLGNAMAACRSFQRALELDHKNAQAqqefknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPAC 159
Cdd:COG3914 81 LELAALL---LQALGRYEEALALYRRALALNPDNAEA------------LFNLGNLLLALGRLEEALAALRRALALNPDF 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564374218 160 HRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKAC 231
Cdd:COG3914 146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
107-370 |
5.27e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 68.49 E-value: 5.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 107 LELDHKNAQAqqefknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDI 186
Cdd:COG0457 1 LELDPDDAEA------------YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 187 LRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDhekaclacrNAKALKAKkedGNKAFKEGNYKLAYELYTEA 266
Cdd:COG0457 69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD---------DAEALYNL---GLALLELGRYDEAIEAYERA 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 267 LGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFEEAVRDYEKVYQTEKTKE 346
Cdd:COG0457 137 LELDPDD----ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212
|
250 260
....*....|....*....|....
gi 564374218 347 HKQLLKNAQLELKKSKRKDYYKIL 370
Cdd:COG0457 213 ILTLAALAELLLLALALLLALRLA 236
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
3-222 |
6.88e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.99 E-value: 6.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 3 KLCRRRSREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRG 82
Cdd:COG2956 67 KLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 83 HLREGKCHLSLGNAMAACRSFQRALELDHKNAQAqqefknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRF 162
Cdd:COG2956 147 YCELAELYLEQGDYDEAIEALEKALKLDPDCARA------------LLLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 163 KILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDcIEKAVQFFVQALR 222
Cdd:COG2956 215 LPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEG-LEAALALLERQLR 273
|
|
| PRK14286 |
PRK14286 |
chaperone protein DnaJ; Provisional |
364-445 |
7.86e-13 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172774 [Multi-domain] Cd Length: 372 Bit Score: 69.63 E-value: 7.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 364 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGasaevQKEEEKKFKEVGEAFTILSDPKKKTRYDSgqdLDEEGMN 443
Cdd:PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG-----NKESEEKFKEATEAYEILRDPKKRQAYDQ---FGKAGVN 75
|
..
gi 564374218 444 MG 445
Cdd:PRK14286 76 AG 77
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
237-337 |
8.58e-13 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 69.43 E-value: 8.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 237 AKALKAKkedGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYL 316
Cdd:PLN03088 2 AKDLEDK---AKEAFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74
|
90 100
....*....|....*....|.
gi 564374218 317 RRAQCYMDTEQFEEAVRDYEK 337
Cdd:PLN03088 75 RKGTACMKLEEYQTAKAALEK 95
|
|
| PRK14285 |
PRK14285 |
chaperone protein DnaJ; Provisional |
363-432 |
2.89e-12 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172773 [Multi-domain] Cd Length: 365 Bit Score: 68.09 E-value: 2.89e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 363 RKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGasaevQKEEEKKFKEVGEAFTILSDPKKKTRYD 432
Cdd:PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKG-----NKEAESIFKEATEAYEVLIDDNKRAQYD 66
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
178-340 |
3.57e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 68.48 E-value: 3.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 178 EAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLACRNAKALKAKKEDGNKAFKEGNYK 257
Cdd:COG3914 16 ALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 258 LAYELYTEALGIDPNniktNAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFEEAVRDYEK 337
Cdd:COG3914 96 EALALYRRALALNPD----NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRR 171
|
...
gi 564374218 338 VYQ 340
Cdd:COG3914 172 ALE 174
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
8-337 |
5.83e-12 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 67.70 E-value: 5.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 8 RSREAESFKEQGNAYYAKKDYNEAYNYYTKAIdMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREG 87
Cdd:TIGR00990 123 RKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAI-ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRA 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 88 KCHLSLGNamaacrsFQRALeLDHKNAQAQQEFKNANAVMEYEkiaevdfekRDFRKvvFCMDRALEfapachrfkILKA 167
Cdd:TIGR00990 202 NAYDGLGK-------YADAL-LDLTASCIIDGFRNEQSAQAVE---------RLLKK--FAESKAKE---------ILET 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 168 EclamLGRYPEAQFVAS--DILRM--------DSTNADA--------LYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEK 229
Cdd:TIGR00990 254 K----PENLPSVTFVGNylQSFRPkprpagleDSNELDEetgngqlqLGLKSPESKADESYEEAARAFEKALDLGKLGEK 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 230 ACLACRNAKALKakkedgnkaFKEGNYKLAYELYTEALGIDPNNIKTnaklYCNRGTVNSKLKKLEDAIEDCTNAVKLDD 309
Cdd:TIGR00990 330 EAIALNLRGTFK---------CLKGKHLEALADLSKSIELDPRVTQS----YIKRASMNLELGDPDKAEEDFDKALKLNS 396
|
330 340
....*....|....*....|....*...
gi 564374218 310 TYVKAYLRRAQCYMDTEQFEEAVRDYEK 337
Cdd:TIGR00990 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQK 424
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
3-190 |
1.29e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 65.14 E-value: 1.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 3 KLCRRRSREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRG 82
Cdd:COG2956 101 KLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARA 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 83 HLREGKCHLSLGNAMAACRSFQRALELDHKNAQAqqefknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPAcHRF 162
Cdd:COG2956 181 LLLLAELYLEQGDYEEAIAALERALEQDPDYLPA------------LPRLAELYEKLGDPEEALELLRKALELDPS-DDL 247
|
170 180
....*....|....*....|....*...
gi 564374218 163 KILKAECLAMLGRYPEAQFVASDILRMD 190
Cdd:COG2956 248 LLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
12-141 |
1.77e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 64.26 E-value: 1.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 12 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHL 91
Cdd:COG0457 76 AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE 155
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 564374218 92 SLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVMEYEKIAEVDFEKRD 141
Cdd:COG0457 156 KLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQ 205
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
6-118 |
2.24e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.18 E-value: 2.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 6 RRRSREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLR 85
Cdd:COG4235 11 AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYL 90
|
90 100 110
....*....|....*....|....*....|...
gi 564374218 86 EGKCHLSLGNAMAACRSFQRALELDHKNAQAQQ 118
Cdd:COG4235 91 LGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| DjlA |
COG1076 |
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones]; |
365-426 |
3.02e-11 |
|
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440694 [Multi-domain] Cd Length: 75 Bit Score: 59.04 E-value: 3.02e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564374218 365 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRH-SGASAEVQKEEEKKFKEVGEAFTILSDPK 426
Cdd:COG1076 5 DAFELLGLPPDADDAELKRAYRKLQREHHPDRLaAGLPEEEQRLALQKAAAINEAYETLKDPR 67
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
9-139 |
4.02e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.59 E-value: 4.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 9 SREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGK 88
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 564374218 89 CHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVMEYEKIAEVDFEK 139
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131
|
|
| PRK14296 |
PRK14296 |
chaperone protein DnaJ; Provisional |
362-432 |
5.74e-11 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237666 [Multi-domain] Cd Length: 372 Bit Score: 63.81 E-value: 5.74e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564374218 362 KRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYD 432
Cdd:PRK14296 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAH------DKMVEINEAADVLLDKDKRKQYD 66
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
104-275 |
7.18e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 64.63 E-value: 7.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 104 QRALELDHKNAQAQQEFKNANAVMEYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVA 183
Cdd:COG3914 56 AAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAAL 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 184 SDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLACrnAKALkakkedgnkaFKEGNYKLAYELY 263
Cdd:COG3914 136 RRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNL--GNAL----------QDLGRLEEAIAAY 203
|
170
....*....|..
gi 564374218 264 TEALGIDPNNIK 275
Cdd:COG3914 204 RRALELDPDNAD 215
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
18-368 |
1.03e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 64.33 E-value: 1.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 18 QGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAM 97
Cdd:TIGR02917 131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIE 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 98 AACRSFQRALELDHKNAQAqqEFKNANAVMEYEKIAEVDFEkrdfrkvvfcMDRALEFAPACHRFKILKAECLAMLGRYP 177
Cdd:TIGR02917 211 LALAAYRKAIALRPNNIAV--LLALATILIEAGEFEEAEKH----------ADALLKKAPNSPLAHYLKALVDFQKKNYE 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 178 EAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKA--CLAC---RNAKALKAKKE------- 245
Cdd:TIGR02917 279 DARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQArrLLASiqlRLGRVDEAIATlspalgl 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 246 ----------DGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLycnrGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAY 315
Cdd:TIGR02917 359 dpddpaalslLGEAYLALGDFEKAAEYLAKATELDPENAAARTQL----GISKLSQGDPSEAIADLETAAQLDPELGRAD 434
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 564374218 316 LRRAQCYMDTEQFEEAVRDYEKVYQTEKTKEHKQLLKNA--QLELKKSKRKDYYK 368
Cdd:TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAiyLGKGDLAKAREAFE 489
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
3-113 |
2.69e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.28 E-value: 2.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 3 KLCRRRSREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRG 82
Cdd:COG4783 29 KALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEA 108
|
90 100 110
....*....|....*....|....*....|.
gi 564374218 83 HLREGKCHLSLGNAMAACRSFQRALELDHKN 113
Cdd:COG4783 109 YLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PRK14300 |
PRK14300 |
chaperone protein DnaJ; Provisional |
364-453 |
1.39e-09 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172788 [Multi-domain] Cd Length: 372 Bit Score: 59.64 E-value: 1.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 364 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTILSDPKKKTRYDS-GQDLDEE-- 440
Cdd:PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAE------KKFKEINAAYDVLKDEQKRAAYDRfGHDAFQNqq 76
|
90
....*....|....*....
gi 564374218 441 ----GMNMGDF--DANNIF 453
Cdd:PRK14300 77 srggGGNHGGFhpDINDIF 95
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
194-340 |
1.70e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.97 E-value: 1.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 194 ADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDhekaclacrNAKALKAKkedGNKAFKEGNYKLAYELYTEALGIDPNN 273
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPD---------NPEAFALL---GEILLQLGDLDEAIVLLHEALELDPDE 71
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564374218 274 iktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFEEAVRDYEKVYQ 340
Cdd:COG4783 72 ----PEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
6-110 |
1.71e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.51 E-value: 1.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 6 RRRSREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLR 85
Cdd:COG5010 48 DKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSN 127
|
90 100
....*....|....*....|....*
gi 564374218 86 EGKCHLSLGNAMAACRSFQRALELD 110
Cdd:COG5010 128 LAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
21-110 |
2.55e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.41 E-value: 2.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 21 AYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALgDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAAC 100
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|
gi 564374218 101 RSFQRALELD 110
Cdd:COG3063 80 AYLERALELD 89
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
27-134 |
3.41e-09 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 58.26 E-value: 3.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 27 DYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAAcrsfQRA 106
Cdd:PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA----KAA 92
|
90 100
....*....|....*....|....*...
gi 564374218 107 LELDHKNAQAQQEFKNANAVMEyEKIAE 134
Cdd:PLN03088 93 LEKGASLAPGDSRFTKLIKECD-EKIAE 119
|
|
| PRK10266 |
PRK10266 |
curved DNA-binding protein; |
364-432 |
3.48e-09 |
|
curved DNA-binding protein;
Pssm-ID: 182347 [Multi-domain] Cd Length: 306 Bit Score: 57.91 E-value: 3.48e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564374218 364 KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekkFKEVGEAFTILSDPKKKTRYD 432
Cdd:PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAR------FKEVAEAWEVLSDEQRRAEYD 66
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
19-370 |
3.82e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 59.33 E-value: 3.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 19 GNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNama 98
Cdd:TIGR02917 370 GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ--- 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 99 acrsFQRALEldhknAQAQQEFKNANAVMEYEKIAEVDFEKRDFRKVVFCMDRALEFAPAchrfkilkaeclamlgrYPE 178
Cdd:TIGR02917 447 ----FDKALA-----AAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-----------------FFP 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 179 AqfvASDILRMDstnadalyvrglclYYEDCIEKAVQFFVQALRMAPDHEKACLACRNAKALKAKKEDG----NKAFKE- 253
Cdd:TIGR02917 501 A---AANLARID--------------IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAvawlEKAAELn 563
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 254 -----------------GNYKLAYELYTEALgidpNNIKTNAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYL 316
Cdd:TIGR02917 564 pqeiepalalaqyylgkGQLKKALAILNEAA----DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALL 639
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 564374218 317 RRAQCYMDTEQFEEAVRDYEKVYQTEKTKEHKQLLKnAQLELKKSKRKDYYKIL 370
Cdd:TIGR02917 640 LLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL-AQLLLAAKRTESAKKIA 692
|
|
| PRK14288 |
PRK14288 |
molecular chaperone DnaJ; |
366-447 |
1.64e-08 |
|
molecular chaperone DnaJ;
Pssm-ID: 172776 [Multi-domain] Cd Length: 369 Bit Score: 56.24 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 366 YYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGasaevQKEEEKKFKEVGEAFTILSDPKKKTRYD--SGQDLDEEGMN 443
Cdd:PRK14288 5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAG-----DKEAEEKFKLINEAYGVLSDEKKRALYDryGKKGLNQAGAS 79
|
....
gi 564374218 444 MGDF 447
Cdd:PRK14288 80 QSDF 83
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
12-123 |
1.87e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 54.92 E-value: 1.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 12 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHL 91
Cdd:COG4785 107 AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER 186
|
90 100 110
....*....|....*....|....*....|....*
gi 564374218 92 SLGNAMAACR---SFQRALELDHKNAQAQQEFKNA 123
Cdd:COG4785 187 KLDPEKALALlleDWATAYLLQGDTEEARELFKLA 221
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
123-273 |
2.81e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.50 E-value: 2.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 123 ANAVMEYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGL 202
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564374218 203 CLYYEDCIEKAVQFFVQALRMAPDHEKACLacRNAKALKAKkedgnkafkeGNYKLAYELYTEALGIDPNN 273
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYL--RLARAYRAL----------GRPDEAIAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
250-340 |
3.25e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.94 E-value: 3.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 250 AFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEdCTNAVKLDDTYVKAYLRRAQCYMDTEQFE 329
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDN----ADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD 76
|
90
....*....|.
gi 564374218 330 EAVRDYEKVYQ 340
Cdd:COG3063 77 EALAYLERALE 87
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
2-116 |
6.95e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 53.00 E-value: 6.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 2 WKLCRRRSREAESFKEQGNAYYAKKDYNEAYNYYTkaidMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVR 81
Cdd:COG4785 33 AVLALAIALADLALALAAAALAAAALAAERIDRAL----ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAE 108
|
90 100 110
....*....|....*....|....*....|....*
gi 564374218 82 GHLREGKCHLSLGNAMAACRSFQRALELDHKNAQA 116
Cdd:COG4785 109 AYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
237-338 |
7.16e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.35 E-value: 7.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 237 AKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYL 316
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN----PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARL 76
|
90 100
....*....|....*....|..
gi 564374218 317 RRAQCYMDTEQFEEAVRDYEKV 338
Cdd:COG4783 77 NLGLALLKAGDYDEALALLEKA 98
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
98-230 |
8.88e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.77 E-value: 8.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 98 AACRSFQRALELDHKNAQAqqefknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYP 177
Cdd:COG4235 1 EAIARLRQALAANPNDAEG------------WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTE 68
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 564374218 178 EAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKA 230
Cdd:COG4235 69 EAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
247-338 |
1.37e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.39 E-value: 1.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 247 GNKAFKEGNYKLAYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTE 326
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDN----ADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99
|
90
....*....|..
gi 564374218 327 QFEEAVRDYEKV 338
Cdd:COG4235 100 DYAEAIAAWQKL 111
|
|
| djlA |
PRK09430 |
co-chaperone DjlA; |
364-395 |
1.49e-07 |
|
co-chaperone DjlA;
Pssm-ID: 236512 [Multi-domain] Cd Length: 267 Bit Score: 52.51 E-value: 1.49e-07
10 20 30
....*....|....*....|....*....|....
gi 564374218 364 KDYYKILGVDKNASEDEIKKAYRKraLM--HHPD 395
Cdd:PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRK--LMseHHPD 231
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
193-343 |
3.38e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.96 E-value: 3.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 193 NADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPN 272
Cdd:COG5010 7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564374218 273 NiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFEEAVRDYEKVYQTEK 343
Cdd:COG5010 87 N----PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
144-273 |
7.00e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.46 E-value: 7.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 144 KVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRM 223
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 564374218 224 APDHEKAcLACRnakalkakkedGNKAFKEGNYKLAYELYTEALGIDPNN 273
Cdd:COG4235 81 DPDNPEA-LYLL-----------GLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
27-245 |
8.80e-07 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 51.52 E-value: 8.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 27 DYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRA 106
Cdd:TIGR00990 380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 107 LeldhknaqaqQEFKNANAVMEYekIAEVDFEKRDFRKVVFCMDRALEFA----PACHRFKILKAECLAML---GRYPEA 179
Cdd:TIGR00990 460 K----------KNFPEAPDVYNY--YGELLLDQNKFDEAIEKFDTAIELEketkPMYMNVLPLINKALALFqwkQDFIEA 527
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564374218 180 QFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLACRNAKALKAKKE 245
Cdd:TIGR00990 528 ENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQ 593
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
3-84 |
8.99e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 51.53 E-value: 8.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 3 KLCRRRSREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRL--DDSFV 80
Cdd:COG3914 137 RALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELdpDNADA 216
|
....
gi 564374218 81 RGHL 84
Cdd:COG3914 217 HSNL 220
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
87-363 |
1.90e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 50.47 E-value: 1.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 87 GKCHLSLGNAMAACRSFQRALELDHKNAQA----------QQEF---------------KNANAVMEYEKIAEVDFEKRD 141
Cdd:TIGR02917 63 GKIYLALGDYAAAEKELRKALSLGYPKNQVlpllarayllQGKFqqvldelpgktllddEGAAELLALRGLAYLGLGQLE 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 142 FRKVVFcmDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQAL 221
Cdd:TIGR02917 143 LAQKSY--EQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAI 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 222 RMAPDHEKACLAcrnakalkakkeDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKlycnRGTVNSKLKKLEDAIEDC 301
Cdd:TIGR02917 221 ALRPNNIAVLLA------------LATILIEAGEFEEAEKHADALLKKAPNSPLAHYL----KALVDFQKKNYEDARETL 284
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564374218 302 TNAVKLDDTYVKA-YLRRAQCYM--DTEQFEEAVRDYEKvyQTEKTKEHKQLLKNAQLELKKSKR 363
Cdd:TIGR02917 285 QDALKSAPEYLPAlLLAGASEYQlgNLEQAYQYLNQILK--YAPNSHQARRLLASIQLRLGRVDE 347
|
|
| C39_PA2778_fam |
NF033920 |
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ... |
19-75 |
1.10e-05 |
|
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).
Pssm-ID: 468245 [Multi-domain] Cd Length: 255 Bit Score: 46.77 E-value: 1.10e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 564374218 19 GNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRL 75
Cdd:NF033920 197 GNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALAL 253
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
12-119 |
1.87e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 46.15 E-value: 1.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 12 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHL 91
Cdd:COG0457 110 AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALA 189
|
90 100
....*....|....*....|....*...
gi 564374218 92 SLGNAMAACRSFQRALELDHKNAQAQQE 119
Cdd:COG0457 190 LAAAEVLLALLLALEQALRKKLAILTLA 217
|
|
| ZUO1 |
COG5269 |
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ... |
357-433 |
2.40e-05 |
|
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 227594 [Multi-domain] Cd Length: 379 Bit Score: 46.56 E-value: 2.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 357 ELKKSKRKDYYKILGVDK---NASEDEIKKAYRKRALMHHPDRhsgASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDS 433
Cdd:COG5269 36 DFKNWKKVDLYALLGLSKyrtKAIPPQILKAHKKKVYKYHPDK---TAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS 112
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
19-60 |
4.37e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 40.53 E-value: 4.37e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 564374218 19 GNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLG 60
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
174-274 |
1.01e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 45.07 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 174 GRYPEAQFVASDILRMDSTNADAlyVRGLC-LYYEDCIEKAVQFfVQALrmAPDHEKACLACRNAKALKAKKEDGNKAFK 252
Cdd:PRK11447 399 KDYAAAERYYQQALRMDPGNTNA--VRGLAnLYRQQSPEKALAF-IASL--SASQRRSIDDIERSLQNDRLAQQAEALEN 473
|
90 100
....*....|....*....|..
gi 564374218 253 EGNYKLAYELYTEALGIDPNNI 274
Cdd:PRK11447 474 QGKWAQAAELQRQRLALDPGSV 495
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
12-45 |
1.08e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.35 E-value: 1.08e-04
10 20 30
....*....|....*....|....*....|....
gi 564374218 12 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKN 45
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
288-432 |
1.63e-04 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 44.39 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 288 NSKLKKLEDAIEDCTnavkLDDTYVKAYLRRAQcymdtEQFEEAVRDYEKVYQTEKTkehkqllknaqLELKKSKrkdYY 367
Cdd:PTZ00341 520 NEEQQTADEHVEEPT----IAEEHVEEEISTAE-----EHIEEPASDVQQDSEAAPT-----------IEIPDTL---FY 576
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564374218 368 KILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAevqkeeEKKFKEVGEAFTILSDPKKKTRYD 432
Cdd:PTZ00341 577 DILGVGVNADMKEISERYFKLAENYYPPKRSGNEG------FHKFKKINEAYQILGDIDKKKMYN 635
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
259-338 |
2.10e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.14 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 259 AYELYTEALGIDPNNiktnAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFEEAVRDYEKV 338
Cdd:COG4235 2 AIARLRQALAANPND----AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA 77
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
12-45 |
3.36e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.79 E-value: 3.36e-04
10 20 30
....*....|....*....|....*....|....
gi 564374218 12 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKN 45
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
150-271 |
8.37e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 8.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 150 DRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEK 229
Cdd:COG5010 44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN 123
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 564374218 230 ACLACRNAKAlkakkedgnkafKEGNYKLAYELYTEALGIDP 271
Cdd:COG5010 124 AYSNLAALLL------------SLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
12-81 |
9.17e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 9.17e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 12 AESFKEQGNAYYAKKDYNEAYNYyTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVR 81
Cdd:COG3063 26 ADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
2-139 |
1.11e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.56 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 2 WKLCRRRSREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVR 81
Cdd:COG5010 10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE 89
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 564374218 82 GHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVMEYEKIAEVDFEK 139
Cdd:COG5010 90 LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
278-311 |
1.37e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.24 E-value: 1.37e-03
10 20 30
....*....|....*....|....*....|....
gi 564374218 278 AKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTY 311
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
249-341 |
1.81e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.05 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 249 KAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYcNRGTVNSKLKKLEDAIEDCTNAVKL---DDTYVKAYLRRAQCYMDT 325
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALY-WLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLEL 80
|
90
....*....|....*.
gi 564374218 326 EQFEEAVRDYEKVYQT 341
Cdd:COG1729 81 GDYDKARATLEELIKK 96
|
|
| PRK12370 |
PRK12370 |
HilA/EilA family virulence transcriptional regulator; |
88-216 |
1.95e-03 |
|
HilA/EilA family virulence transcriptional regulator;
Pssm-ID: 237080 [Multi-domain] Cd Length: 553 Bit Score: 40.61 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 88 KCHLSLG--------NAM-AACRSFQRALELDHKNAQAQQEFKNANAVMEYEKIAEVDFEKrdfrkvvfcmdrALEFAPA 158
Cdd:PRK12370 303 ECYLSMAqmgifdkqNAMiKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQ------------ANLLSPI 370
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 564374218 159 CHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQF 216
Cdd:PRK12370 371 SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRL 428
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
96-360 |
2.75e-03 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 39.48 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 96 AMAACRSFQRALeldhKNAQAQQEFKNANAVME---YEKiAEVDFEKrdfrkvvfcMDRALEFAPACHRFKILKAECLAM 172
Cdd:COG4105 16 LLAGCSSFKKAL----KSWDAEELYEEAKEALEkgdYEK-AIKLFEE---------LEPRYPGSPYAEQAQLMLAYAYYK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 173 LGRYPEAQFVASDILRM--DSTNAD-ALYVRGLCLYYED--------CIEKAVQFFVQALRMAPDHEKAclacrnakalk 241
Cdd:COG4105 82 QGDYEEAIAAADRFIKLypNSPNADyAYYLRGLSYYEQSpdsdrdqtSTRKAIEAFQELINRYPDSEYA----------- 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 242 akkEDGNKAFKEGNYKLA-YELYtealgidpnniktNAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDtyvkAYLRRAQ 320
Cdd:COG4105 151 ---EDAKKRIDELRDKLArKELE-------------VARYYLKRGAYVAAINRFQNVLEDYPDTPAVEE----ALYLLVE 210
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 564374218 321 CYMDTEQFEEAvRDYEKVYQ-----TEKTKEHKQLLKNAQLELKK 360
Cdd:COG4105 211 AYYALGRYDEA-QDAAAVLGknypdSPYLKDAEKLLKKIGKELKK 254
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
114-225 |
3.26e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.40 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 114 AQAQQEFKNANAVMEYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDSTN 193
Cdd:COG5010 42 LAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDN 121
|
90 100 110
....*....|....*....|....*....|..
gi 564374218 194 ADALYVRGLCLYYEDCIEKAVQFFVQALRMAP 225
Cdd:COG5010 122 PNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR_17 |
pfam13431 |
Tetratricopeptide repeat; |
34-66 |
3.40e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433201 [Multi-domain] Cd Length: 34 Bit Score: 35.21 E-value: 3.40e-03
10 20 30
....*....|....*....|....*....|...
gi 564374218 34 YYTKAIDMCPKNASYYGNRAATLMMLGRFREAL 66
Cdd:pfam13431 1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
31-190 |
4.05e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.02 E-value: 4.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 31 AYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELD 110
Cdd:COG5010 5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 111 HKNAQAqqefknanavmeYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMD 190
Cdd:COG5010 85 PNNPEL------------YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
169-272 |
4.41e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 36.69 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 169 CLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFvQALRMAPDhekaclacrNAKALKAKkedGN 248
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALE-KALKLDPN---------NAEALLNL---AE 67
|
90 100
....*....|....*....|....
gi 564374218 249 KAFKEGNYKLAYELYTEALGIDPN 272
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPS 91
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
278-311 |
4.52e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.73 E-value: 4.52e-03
10 20 30
....*....|....*....|....*....|....
gi 564374218 278 AKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTY 311
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
21-118 |
5.40e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.89 E-value: 5.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 21 AYYAKKDYNEAYNYYTKAIDMCPK-----NASYYgnRAATLMMLGRFREALGDAQQSVRL--DDSFV-RGHLREGKCHLS 92
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNsplapDALYW--LGEAYYALGDYDEAAEAFEKLLKRypDSPKApDALLKLGLSYLE 79
|
90 100
....*....|....*....|....*.
gi 564374218 93 LGNAMAACRSFQRALELDHKNAQAQQ 118
Cdd:COG1729 80 LGDYDKARATLEELIKKYPDSEAAKE 105
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
90-290 |
7.89e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 37.97 E-value: 7.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 90 HLSLGNAMAACRSFQRALE--LDHKNAQAQQEFKNANAVMEYEKIAEVDFEKRDFRKVVFCMDRALEFApachrfkiLKA 167
Cdd:COG4785 9 LLALALAAAAASKAAILLAalLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYY--------ERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 168 ECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLacRNAKALKAKkedg 247
Cdd:COG4785 81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYL--NRGIALYYL---- 154
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 564374218 248 nkafkeGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSK 290
Cdd:COG4785 155 ------GRYELAIADLEKALELDPNDPERALWLYLAERKLDPE 191
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
27-242 |
8.91e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 38.69 E-value: 8.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 27 DYNEAYNYYTKAIDMCPKN------ASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLS-------- 92
Cdd:COG3899 720 AYAEALRYLERALELLPPDpeeeyrLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNPPASarayanlg 799
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564374218 93 ---LGNAMAACRSFQRALELDHKNAQAQQEFKNANAVmeyekiAEVDFEKRDFRKVVFCMDRALEFAPAC--HRFKILKA 167
Cdd:COG3899 800 lllLGDYEEAYEFGELALALAERLGDRRLEARALFNL------GFILHWLGPLREALELLREALEAGLETgdAALALLAL 873
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564374218 168 ECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLACRNAKALKA 242
Cdd:COG3899 874 AAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAA 948
|
|
| |
