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Conserved domains on  [gi|564390560|ref|XP_006253713|]
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protein FAM193B isoform X5 [Rattus norvegicus]

Protein Classification

PTZ00449 and FAM193_C domain-containing protein( domain architecture ID 11239807)

PTZ00449 and FAM193_C domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FAM193_C pfam15914
FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 ...
 690-742 1.03e-25

FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. This C-terminal region of these proteins carries the most conserved residues.


:

Pssm-ID: 464940  Cd Length: 57  Bit Score: 100.38  E-value: 1.03e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 564390560  690 DVFLPK--DLDGVEMDETDREVEYFKRFCLDSAKQTR-QKVAVNWTNFSLKKTAPS 742
Cdd:pfam15914   1 DVFLPKdiDLDDVEMDDTEREVEYFKRFCLDSAPQTRkQKVHVNWKDFSLKKKTTA 56
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 468-630 4.71e-04

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 4.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560  468 PQSHTLQAPSEPVPPWAERRDPHPPwtevrGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSSEESPKE--VPICK 545
Cdd:PHA03247 2680 PQRPRRRAARPTVGSLTSLADPPPP-----PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGpaTPGGP 2754

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560  546 QERSEPVATGGKPRKSKrqgSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPI 625
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAP---PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831


                  ....*
gi 564390560  626 QAASP 630
Cdd:PHA03247 2832 TSAQP 2836
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 96-160 3.47e-03

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 3.47e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564390560   96 SDLTAPPNSPTGPAPHPASLIPSHPGSFSSASHPHLLPTTPAAPFPAQASECPMAAATATHPPGP 160
Cdd:PHA03247 2696 TSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP 2760
 
Name Accession Description Interval E-value
FAM193_C pfam15914
FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 ...
 690-742 1.03e-25

FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. This C-terminal region of these proteins carries the most conserved residues.


Pssm-ID: 464940  Cd Length: 57  Bit Score: 100.38  E-value: 1.03e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 564390560  690 DVFLPK--DLDGVEMDETDREVEYFKRFCLDSAKQTR-QKVAVNWTNFSLKKTAPS 742
Cdd:pfam15914   1 DVFLPKdiDLDDVEMDDTEREVEYFKRFCLDSAPQTRkQKVHVNWKDFSLKKKTTA 56
PHA03247 PHA03247
large tegument protein UL36; Provisional
 468-630 4.71e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 4.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560  468 PQSHTLQAPSEPVPPWAERRDPHPPwtevrGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSSEESPKE--VPICK 545
Cdd:PHA03247 2680 PQRPRRRAARPTVGSLTSLADPPPP-----PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGpaTPGGP 2754

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560  546 QERSEPVATGGKPRKSKrqgSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPI 625
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAP---PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831


                  ....*
gi 564390560  626 QAASP 630
Cdd:PHA03247 2832 TSAQP 2836
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 417-632 3.16e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 40.71  E-value: 3.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560  417 ASLNMCELGMDSSGFKEGTMEAQTLTPSDLSGSSQKQPDINLDLSPLTLGSPQSHTLqAPSEPVPPWAERRDPHPPW-TE 495
Cdd:pfam17823 224 AGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRL-SPAKHMPSDTMARNPAAPMgAQ 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560  496 VRGPPPAIPENGLVrrLNTVPNlsrviwvktPKPgKPSSEESPKEVPICKQERSEPVATGGKprkskrqgSQAKKTEASP 575
Cdd:pfam17823 303 AQGPIIQVSTDQPV--HNTAGE---------PTP-SPSNTTLEPNTPKSVASTNLAVVTTTK--------AQAKEPSASP 362

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564390560  576 APWPPANQ----EAPSAKSQMSS--PKQPGKGP----EPAKAGSAAEPGEGSRGsrPGPIQAASPKT 632
Cdd:pfam17823 363 VPVLHTSMipevEATSPTTQPSPllPTQGAAGPgillAPEQVATEATAGTASAG--PTPRSSGDPKT 427
PHA03247 PHA03247
large tegument protein UL36; Provisional
 96-160 3.47e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 3.47e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564390560   96 SDLTAPPNSPTGPAPHPASLIPSHPGSFSSASHPHLLPTTPAAPFPAQASECPMAAATATHPPGP 160
Cdd:PHA03247 2696 TSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP 2760
 
Name Accession Description Interval E-value
FAM193_C pfam15914
FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 ...
 690-742 1.03e-25

FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. This C-terminal region of these proteins carries the most conserved residues.


Pssm-ID: 464940  Cd Length: 57  Bit Score: 100.38  E-value: 1.03e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 564390560  690 DVFLPK--DLDGVEMDETDREVEYFKRFCLDSAKQTR-QKVAVNWTNFSLKKTAPS 742
Cdd:pfam15914   1 DVFLPKdiDLDDVEMDDTEREVEYFKRFCLDSAPQTRkQKVHVNWKDFSLKKKTTA 56
PHA03247 PHA03247
large tegument protein UL36; Provisional
 468-630 4.71e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 4.71e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560  468 PQSHTLQAPSEPVPPWAERRDPHPPwtevrGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSSEESPKE--VPICK 545
Cdd:PHA03247 2680 PQRPRRRAARPTVGSLTSLADPPPP-----PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGpaTPGGP 2754

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560  546 QERSEPVATGGKPRKSKrqgSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPI 625
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAP---PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831


                  ....*
gi 564390560  626 QAASP 630
Cdd:PHA03247 2832 TSAQP 2836
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 525-708 1.13e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 1.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560 525 KTPKPGKPSSEESPKEVPICKQERSEPVATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEp 604
Cdd:PRK07764 628 APAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA- 706

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560 605 akAGSAAEPGEGSRGSRPGPIQAASPKTdkkgsswqnwPGGARARTLEQESEQIPGPAKPQSLSQGKGR-SRRSRNKQEK 683
Cdd:PRK07764 707 --ATPPAGQADDPAAQPPQAAQGASAPS----------PAADDPVPLPPEPDDPPDPAGAPAQPPPPPApAPAAAPAAAP 774

                        170       180
                 ....*....|....*....|....*
gi 564390560 684 SASSLDDVFLPKDLDGVEMDETDRE 708
Cdd:PRK07764 775 PPSPPSEEEEMAEDDAPSMDDEDRR 799
PHA03247 PHA03247
large tegument protein UL36; Provisional
 442-668 1.31e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 1.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560  442 TPSDLSGSSQKQPdinldlsPLTLGSPQSHTLQAP-SEPVPPWAERRDPHPPWTEVRGPPPAIPENGLVRRLNTVPNLSR 520
Cdd:PHA03247 2600 APVDDRGDPRGPA-------PPSPLPPDTHAPDPPpPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR 2672

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560  521 VIWVKTPkPGKPSSEESPKEV--------PICKQERSEPVATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQM 592
Cdd:PHA03247 2673 AAQASSP-PQRPRRRAARPTVgsltsladPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATP 2751

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564390560  593 SSPKQPGKGPEPAKAGSAAEPGEGSRGSRPG-PIQAASPKTDKKGSSWQNWPGGARARTLEQESEQIPGPAKPQSLS 668
Cdd:PHA03247 2752 GGPARPARPPTTAGPPAPAPPAAPAAGPPRRlTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL 2828
PHA03378 PHA03378
EBNA-3B; Provisional
 458-670 1.99e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 41.59  E-value: 1.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560 458 LDLSPLTLGSPQSHTLQAPSEPVPPWAE---RRDPHPPWTEVRGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSS 534
Cdd:PHA03378 572 LQIQPLTSPTTSQLASSAPSYAQTPWPVphpSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTP 651

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560 535 EESPKEVPICKQersepvATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQ--PGKGPEPAKAGSAAE 612
Cdd:PHA03378 652 HQPPQVEITPYK------PTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAapPGRAQRPAAATGRAR 725

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 564390560 613 PGEGSRGSRPGPIQAASPKTDKKGSSWQNWPGGArARTLEQESEQIPGPAKPQSLSQG 670
Cdd:PHA03378 726 PPAAAPGRARPPAAAPGRARPPAAAPGRARPPAA-APGRARPPAAAPGAPTPQPPPQA 782
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 417-632 3.16e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 40.71  E-value: 3.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560  417 ASLNMCELGMDSSGFKEGTMEAQTLTPSDLSGSSQKQPDINLDLSPLTLGSPQSHTLqAPSEPVPPWAERRDPHPPW-TE 495
Cdd:pfam17823 224 AGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRL-SPAKHMPSDTMARNPAAPMgAQ 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560  496 VRGPPPAIPENGLVrrLNTVPNlsrviwvktPKPgKPSSEESPKEVPICKQERSEPVATGGKprkskrqgSQAKKTEASP 575
Cdd:pfam17823 303 AQGPIIQVSTDQPV--HNTAGE---------PTP-SPSNTTLEPNTPKSVASTNLAVVTTTK--------AQAKEPSASP 362

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564390560  576 APWPPANQ----EAPSAKSQMSS--PKQPGKGP----EPAKAGSAAEPGEGSRGsrPGPIQAASPKT 632
Cdd:pfam17823 363 VPVLHTSMipevEATSPTTQPSPllPTQGAAGPgillAPEQVATEATAGTASAG--PTPRSSGDPKT 427
PHA03247 PHA03247
large tegument protein UL36; Provisional
 96-160 3.47e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 3.47e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564390560   96 SDLTAPPNSPTGPAPHPASLIPSHPGSFSSASHPHLLPTTPAAPFPAQASECPMAAATATHPPGP 160
Cdd:PHA03247 2696 TSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP 2760
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 525-709 3.66e-03

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 41.00  E-value: 3.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560  525 KTPKPGKP-------SSEESPKEVPICKQERSEPVATGGKPRKskRQGSQ----AKKTEASPAPWPPANQEAPSAKSQMS 593
Cdd:PLN03237 1200 QAPKKPAPkkttkkaSESETTEETYGSSAMETENVAEVVKPKG--RAGAKkkapAAAKEKEEEDEILDLKDRLAAYNLDS 1277

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560  594 SPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPIQAASPKTDKKGSswqnwPGGARARTLEQESEQIPGPAKPQSLSQGKGR 673
Cdd:PLN03237 1278 APAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFA-----VEVSLAERLKKKGGRKPAAANKKAAKPPAAA 1352

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 564390560  674 SRRSRNKQEKSASSLDDVFLPKDLDGVEMDETDREV 709
Cdd:PLN03237 1353 KKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKM 1388
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 553-698 4.28e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 4.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560 553 ATGGKPRKSKRQGSQAKKTEASPAPW---PPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSRGS-RPGPIQAA 628
Cdd:PRK07764 597 GEGPPAPASSGPPEEAARPAAPAAPAapaAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDgWPAKAGGA 676

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560 629 SPKTDKKGSSWQNWPGGARARTLEQESEQIPGPAKPQSLSQGKGRSRRSRNKQEKSASSLDDVFLPKDLD 698
Cdd:PRK07764 677 APAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPD 746
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 546-666 7.97e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 7.97e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560 546 QERSEPVATGGKPrkSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAgSAAEPGEGSRGSRPGPI 625
Cdd:PRK07764 381 LERRLGVAGGAGA--PAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPA-PPSPAGNAPAGGAPSPP 457

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 564390560 626 QAASPKtdkkgSSWQNWPGGARARTLEQESEQIPGPAKPQS 666
Cdd:PRK07764 458 PAAAPS-----AQPAPAPAAAPEPTAAPAPAPPAAPAPAAA 493
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 565-675 9.62e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 9.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560 565 GSQAKKTEASPAPWPPANQEAPSAksqmssPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPIQAASPKTDK--KGSSWQNW 642
Cdd:PRK07764 594 AAGGEGPPAPASSGPPEEAARPAA------PAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVavPDASDGGD 667

                         90       100       110
                 ....*....|....*....|....*....|...
gi 564390560 643 PGGARARTLEQESEQIPGPAKPQSLSQGKGRSR 675
Cdd:PRK07764 668 GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 461-678 9.88e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 39.38  E-value: 9.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560  461 SPLTLGSPQSHTLQAPSEPVPPWAER----RDPHPPW----TEVRGPPPAIPENGLVRRLNTVPNLSrviwvKTPKPGKP 532
Cdd:PHA03307  174 LPLSSPEETARAPSSPPAEPPPSTPPaaasPRPPRRSspisASASSPAPAPGRSAADDAGASSSDSS-----SSESSGCG 248

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564390560  533 SSEESPKEVP-----ICKQERSEPVATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKA 607
Cdd:PHA03307  249 WGPENECPLPrpapiTLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSS 328

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564390560  608 GSAAEPGEGSRGSRPGPIQAASPkTDKKGSSWQNWPGGARARtleqeseqiPGPAKPQSLSQGKGRSRRSR 678
Cdd:PHA03307  329 TSSSSESSRGAAVSPGPSPSRSP-SPSRPPPPADPSSPRKRP---------RPSRAPSSPAASAGRPTRRR 389
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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