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Conserved domains on  [gi|564400805|ref|XP_006257640|]
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heparan-sulfate 6-O-sulfotransferase 2 isoform X3 [Rattus norvegicus]

Protein Classification

sulfotransferase family protein( domain architecture ID 10507897)

sulfotransferase family protein may catalyze the transfer of sulfate from a donor such as 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to an acceptor substrate; such as heparan-sulfate 6-O-sulfotransferases, which catalyze the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate

CATH:  3.40.50.300
EC:  2.8.2.-
Gene Ontology:  GO:0008146|GO:0016020|GO:0050656
PubMed:  31270211|9584614|37545696
SCOP:  4003933

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Sulfotransfer_2 pfam03567
Sulfotransferase family; This family includes a variety of sulfotransferase enzymes. ...
 225-491 7.89e-36

Sulfotransferase family; This family includes a variety of sulfotransferase enzymes. Chondroitin 6-sulfotransferase catalyzes the transfer of sulfate to position 6 of the N-acetylgalactosamine residue of chondroitin. This family also includes Heparan sulfate 2-O-sulfotransferase (HS2ST) and Heparan sulfate 6-sulfotransferase (HS6ST). Heparan sulfate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development. Heparan sulphate 6- O -sulfotransferase (HS6ST) catalyzes the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate.


:

Pssm-ID: 427369  Cd Length: 238  Bit Score: 134.57  E-value: 7.89e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564400805  225 GDDLIVFLHIQKTGGTTFGRHLVRNIQLEQPCeCRVGQKKCTCHRPGKRETwlfsrfstgwscglHADWTELTSCVPAVV 304
Cdd:pfam03567   2 PDHKILYCRVPKVASTSWKRVLCVLQGLAQFD-KRDPLRICSNLVHSSSSV--------------NKKLKRLFRTSPEEI 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564400805  305 DGKrdarlrpSRNFHYITILRDPVSRYLSEWRHVQRGATWkaslhvcdgRPPTSEELPSCYTG---DDWSGCPLKEFMDC 381
Cdd:pfam03567  67 QHR-------LKNYFKFAFVRDPFERLLSAYRDKCGGEII---------RKYTSDECPGCGTDvtfEEFVRYLLDTLTCR 130

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564400805  382 PYnLANNRQVRMLSDLTLvGCYNLSVMPEK-QRNKVLLESAKSNLKHMAFFGLTEFQRKTQYLFEKTFNMNfispFTQYN 460
Cdd:pfam03567 131 EG-LIFNEADRHWAPQSW-LCHPCLIKYDFiGRLETLEEDAKLLLRLLGIFGLQSVPERNLNRIERNFLAG----RTTHK 204

                         250       260       270
                  ....*....|....*....|....*....|....
gi 564400805  461 TTRASSVE---INEEIQKRIEGLNFLDMELYSYA 491
Cdd:pfam03567 205 SSARRQYFkqlRSPELRRRLYKIYYLDFELFGYA 238
 
Name Accession Description Interval E-value
Sulfotransfer_2 pfam03567
Sulfotransferase family; This family includes a variety of sulfotransferase enzymes. ...
 225-491 7.89e-36

Sulfotransferase family; This family includes a variety of sulfotransferase enzymes. Chondroitin 6-sulfotransferase catalyzes the transfer of sulfate to position 6 of the N-acetylgalactosamine residue of chondroitin. This family also includes Heparan sulfate 2-O-sulfotransferase (HS2ST) and Heparan sulfate 6-sulfotransferase (HS6ST). Heparan sulfate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development. Heparan sulphate 6- O -sulfotransferase (HS6ST) catalyzes the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate.


Pssm-ID: 427369  Cd Length: 238  Bit Score: 134.57  E-value: 7.89e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564400805  225 GDDLIVFLHIQKTGGTTFGRHLVRNIQLEQPCeCRVGQKKCTCHRPGKRETwlfsrfstgwscglHADWTELTSCVPAVV 304
Cdd:pfam03567   2 PDHKILYCRVPKVASTSWKRVLCVLQGLAQFD-KRDPLRICSNLVHSSSSV--------------NKKLKRLFRTSPEEI 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564400805  305 DGKrdarlrpSRNFHYITILRDPVSRYLSEWRHVQRGATWkaslhvcdgRPPTSEELPSCYTG---DDWSGCPLKEFMDC 381
Cdd:pfam03567  67 QHR-------LKNYFKFAFVRDPFERLLSAYRDKCGGEII---------RKYTSDECPGCGTDvtfEEFVRYLLDTLTCR 130

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564400805  382 PYnLANNRQVRMLSDLTLvGCYNLSVMPEK-QRNKVLLESAKSNLKHMAFFGLTEFQRKTQYLFEKTFNMNfispFTQYN 460
Cdd:pfam03567 131 EG-LIFNEADRHWAPQSW-LCHPCLIKYDFiGRLETLEEDAKLLLRLLGIFGLQSVPERNLNRIERNFLAG----RTTHK 204

                         250       260       270
                  ....*....|....*....|....*....|....
gi 564400805  461 TTRASSVE---INEEIQKRIEGLNFLDMELYSYA 491
Cdd:pfam03567 205 SSARRQYFkqlRSPELRRRLYKIYYLDFELFGYA 238
 
Name Accession Description Interval E-value
Sulfotransfer_2 pfam03567
Sulfotransferase family; This family includes a variety of sulfotransferase enzymes. ...
 225-491 7.89e-36

Sulfotransferase family; This family includes a variety of sulfotransferase enzymes. Chondroitin 6-sulfotransferase catalyzes the transfer of sulfate to position 6 of the N-acetylgalactosamine residue of chondroitin. This family also includes Heparan sulfate 2-O-sulfotransferase (HS2ST) and Heparan sulfate 6-sulfotransferase (HS6ST). Heparan sulfate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development. Heparan sulphate 6- O -sulfotransferase (HS6ST) catalyzes the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate.


Pssm-ID: 427369  Cd Length: 238  Bit Score: 134.57  E-value: 7.89e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564400805  225 GDDLIVFLHIQKTGGTTFGRHLVRNIQLEQPCeCRVGQKKCTCHRPGKRETwlfsrfstgwscglHADWTELTSCVPAVV 304
Cdd:pfam03567   2 PDHKILYCRVPKVASTSWKRVLCVLQGLAQFD-KRDPLRICSNLVHSSSSV--------------NKKLKRLFRTSPEEI 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564400805  305 DGKrdarlrpSRNFHYITILRDPVSRYLSEWRHVQRGATWkaslhvcdgRPPTSEELPSCYTG---DDWSGCPLKEFMDC 381
Cdd:pfam03567  67 QHR-------LKNYFKFAFVRDPFERLLSAYRDKCGGEII---------RKYTSDECPGCGTDvtfEEFVRYLLDTLTCR 130

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564400805  382 PYnLANNRQVRMLSDLTLvGCYNLSVMPEK-QRNKVLLESAKSNLKHMAFFGLTEFQRKTQYLFEKTFNMNfispFTQYN 460
Cdd:pfam03567 131 EG-LIFNEADRHWAPQSW-LCHPCLIKYDFiGRLETLEEDAKLLLRLLGIFGLQSVPERNLNRIERNFLAG----RTTHK 204

                         250       260       270
                  ....*....|....*....|....*....|....
gi 564400805  461 TTRASSVE---INEEIQKRIEGLNFLDMELYSYA 491
Cdd:pfam03567 205 SSARRQYFkqlRSPELRRRLYKIYYLDFELFGYA 238
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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