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Conserved domains on  [gi|1958647959|ref|XP_008758564|]
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spermatogenesis associated 6-like protein isoform X3 [Rattus norvegicus]

Protein Classification

spermatogenesis-associated protein 6( domain architecture ID 10632997)

spermatogenesis-associated protein 6 (SPATA6) is involved in myosin-based microfilament transport through interaction with myosin subunits

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SPATA6 pfam14909
Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is ...
 7-145 7.66e-74

Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family has similarity to the motor domain of kinesin related proteins and with the Caenorhabditis elegans neural calcium sensor protein (NCS-2).


:

Pssm-ID: 464365  Cd Length: 139  Bit Score: 226.34  E-value: 7.66e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647959   7 VELQIRAISCPGVFLPDKEVVYLGVYLLNQYLETDCFPSVFPIVIQQSMRFEKVFEEAMDPGAVAELLESFLTRFELVQL 86
Cdd:pfam14909   1 VELEIHAVTCPGVWLCDKGDVYLSVCLLGQYKRTRCLPPVFPLLFHEKFRFEKTFKEAVDPAEVADLLEDETIVIELIQL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958647959  87 VSPAWEELAYYEKNTRDFLFPEPKLTSSHLGMQREVLMKTAIWFPGIAPKLEFSTRTAI 145
Cdd:pfam14909  81 VPPVGEVLATYEENARDFLFPEPKLTPTYPGVDRELLMKRTSDFPGIAPKLEFSTKTTI 139
 
Name Accession Description Interval E-value
SPATA6 pfam14909
Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is ...
 7-145 7.66e-74

Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family has similarity to the motor domain of kinesin related proteins and with the Caenorhabditis elegans neural calcium sensor protein (NCS-2).


Pssm-ID: 464365  Cd Length: 139  Bit Score: 226.34  E-value: 7.66e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647959   7 VELQIRAISCPGVFLPDKEVVYLGVYLLNQYLETDCFPSVFPIVIQQSMRFEKVFEEAMDPGAVAELLESFLTRFELVQL 86
Cdd:pfam14909   1 VELEIHAVTCPGVWLCDKGDVYLSVCLLGQYKRTRCLPPVFPLLFHEKFRFEKTFKEAVDPAEVADLLEDETIVIELIQL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958647959  87 VSPAWEELAYYEKNTRDFLFPEPKLTSSHLGMQREVLMKTAIWFPGIAPKLEFSTRTAI 145
Cdd:pfam14909  81 VPPVGEVLATYEENARDFLFPEPKLTPTYPGVDRELLMKRTSDFPGIAPKLEFSTKTTI 139
 
Name Accession Description Interval E-value
SPATA6 pfam14909
Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is ...
 7-145 7.66e-74

Spermatogenesis-assoc protein 6; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family has similarity to the motor domain of kinesin related proteins and with the Caenorhabditis elegans neural calcium sensor protein (NCS-2).


Pssm-ID: 464365  Cd Length: 139  Bit Score: 226.34  E-value: 7.66e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647959   7 VELQIRAISCPGVFLPDKEVVYLGVYLLNQYLETDCFPSVFPIVIQQSMRFEKVFEEAMDPGAVAELLESFLTRFELVQL 86
Cdd:pfam14909   1 VELEIHAVTCPGVWLCDKGDVYLSVCLLGQYKRTRCLPPVFPLLFHEKFRFEKTFKEAVDPAEVADLLEDETIVIELIQL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958647959  87 VSPAWEELAYYEKNTRDFLFPEPKLTSSHLGMQREVLMKTAIWFPGIAPKLEFSTRTAI 145
Cdd:pfam14909  81 VPPVGEVLATYEENARDFLFPEPKLTPTYPGVDRELLMKRTSDFPGIAPKLEFSTKTTI 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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