|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
617-1069 |
1.16e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.09 E-value: 1.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 617 QQNQELKEAEEKLRSTNQDLCNQMRQMVQEfdHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEGTQ 696
Cdd:PTZ00121 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEE--AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 697 SQLRSDLDKLNKEVAAVQECYL----EVCREKDELESTLRKTMEKAQEQTRQL--------LEDREEHVRKLKlELEERY 764
Cdd:PTZ00121 1362 AEEKAEAAEKKKEEAKKKADAAkkkaEEKKKADEAKKKAEEDKKKADELKKAAaakkkadeAKKKAEEKKKAD-EAKKKA 1440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 765 QETLKAEKqswLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPAR--RKATSDCGSQTDQAAYPA-AMPNAEALVL 841
Cdd:PTZ00121 1441 EEAKKADE---AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADeaKKKAEEAKKKADEAKKAAeAKKKADEAKK 1517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 842 AEE--QAHQVQQEKELTVKEALRKSEvelELKYCESIAQKVEtaVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVA 919
Cdd:PTZ00121 1518 AEEakKADEAKKAEEAKKADEAKKAE---EKKKADELKKAEE--LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 920 VAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQEQ 999
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958766044 1000 NE---EDYRQFLEDHRNKINEVLTAAKEdfvKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEE 1069
Cdd:PTZ00121 1673 DKkkaEEAKKAEEDEKKAAEALKKEAEE---AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
602-1091 |
1.61e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.50 E-value: 1.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 602 REDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKH 681
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 682 AAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRkTMEKAQEQTRQLLEDREEHVRKLKLELE 761
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL-EALRAAAELAAQLEELEEAEEALLERLE 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 762 ERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEwQSKLNHSLPARRKATSDCGSQTDQAAYPAAmpNAEALVL 841
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE-EEALLELLAELLEEAALLEAALAELLEELA--EAAARLL 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 842 AEEQAHQVQQEKELTVKEALRKSE---VELELKYCESIAQKVETAVQNARSRWILELPMLAEYKAllrAQQQEWAKQQEV 918
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAALLLAGlrgLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVA---AAAIEYLKAAKA 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 919 AVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEIH---- 994
Cdd:COG1196 572 GRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRevtl 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 995 --KIQEQNEEDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEEDIL 1072
Cdd:COG1196 652 egEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE 731
|
490
....*....|....*....
gi 1958766044 1073 TVLDFLLRDTQLEYDGDSQ 1091
Cdd:COG1196 732 AEREELLEELLEEEELLEE 750
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
235-964 |
4.17e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 4.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 235 KERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKLTK 314
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 315 KLRT-------TEITLESLKQQLVELH-HSESLQRAREQHESVVAGLTQKYEE-QVSCLQKNLDTTItalQEQEDVCTRL 385
Cdd:TIGR02168 380 QLETlrskvaqLELQIASLNNEIERLEaRLERLEDRRERLQQEIEELLKKLEEaELKELQAELEELE---EELEELQEEL 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 386 KDHVQQLERNQEAVRLEKTELinRLTRSLEDSQKQCAHLLQSGSVHEVTQLQLQLQQAQKAHILSESMNKALqeELTGLK 465
Cdd:TIGR02168 457 ERLEEALEELREELEEAEQAL--DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLS--ELISVD 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 466 EEislYESAAELgVLPGD-----VEGDLSVE-----LTESCVG------LGIKNVSWKQSKANSVAQQEPPNEKLSKDEV 529
Cdd:TIGR02168 533 EG---YEAAIEA-ALGGRlqavvVENLNAAKkaiafLKQNELGrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLV 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 530 ilKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRET-MEALQQSKDSD---RGMETKTETSEKTTNQLWldspeaiNREDI 605
Cdd:TIGR02168 609 --KFDPKLRKALSYLLGGVLVVDDLDNALELAKKLrPGYRIVTLDGDlvrPGGVITGGSAKTNSSILE-------RRREI 679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 606 LRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQmvqefdhdkqeAVDRCERTYQQHHEA-MKAQIRESLLAKHAAE 684
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQ-----------LRKELEELSRQISALrKDLARLEAEVEQLEER 748
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 685 KQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYlevcREKDELESTLRKTMEKAQEQTRQLLEDREEHVrklklELEERY 764
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAE----AEIEELEAQIEQLKEELKALREALDELRAELT-----LLNEEA 819
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 765 QEtlKAEKQSWLKAQAAgATQVEHESRQKLIQQLEEEwQSKLNHSLparrkatsdcgsqtdqaaypaampnaealvlAEE 844
Cdd:TIGR02168 820 AN--LRERLESLERRIA-ATERRLEDLEEQIEELSED-IESLAAEI-------------------------------EEL 864
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 845 QAHQVQQEKELTVKEALRKSeVELELKYCESIAQKVETAVQNARSRwilelpMLAEYKALLRAQQQEWAKQQEVAVAH-R 923
Cdd:TIGR02168 865 EELIEELESELEALLNERAS-LEEALALLRSELEELSEELRELESK------RSELRRELEELREKLAQLELRLEGLEvR 937
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 1958766044 924 LSLALSEAKEKWKSELQNMKPN----VASVQELEEKIHSLQKELE 964
Cdd:TIGR02168 938 IDNLQERLSEEYSLTLEEAEALenkiEDDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
233-1017 |
7.53e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 7.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 233 KAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 312
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 313 TKKLRTTEITLESLKQQLVELhhSESLQRAREQHESV---VAGLTQKYEEQVScLQKNLDTTITALQEQ-EDVCTRLKDH 388
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDEL--AEELAELEEKLEELkeeLESLEAELEELEA-ELEELESRLEELEEQlETLRSKVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 389 VQQLERNQEAVRLEKTELiNRLTRSLEDSQKQCAHLLQSGSVHEVTQLQLQLQQAQKAHILSESMNKALQEELTGLKEEI 468
Cdd:TIGR02168 392 ELQIASLNNEIERLEARL-ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREEL 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 469 SLYESA-----AELGVLPGDVEGDLSVELTESCVGLGIKNVSWKQSK----ANSVAQQEPPNEKLSKdEVILKLKTQVQR 539
Cdd:TIGR02168 471 EEAEQAldaaeRELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGlsgiLGVLSELISVDEGYEA-AIEAALGGRLQA 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 540 LLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLWLDSPE--------------------- 598
Cdd:TIGR02168 550 VVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVkfdpklrkalsyllggvlvvd 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 599 ----AIN---------------------------------------REDILRLKNEVEVLQQQNQELKEAEEKLRSTNQD 635
Cdd:TIGR02168 630 dldnALElakklrpgyrivtldgdlvrpggvitggsaktnssilerRREIEELEEKIEELEEKIAELEKALAELRKELEE 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 636 LCNQMRQmvqefdhdkqeAVDRCERTYQQHHEA-MKAQIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQ 714
Cdd:TIGR02168 710 LEEELEQ-----------LRKELEELSRQISALrKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 715 ECYlevcREKDELESTLRKTMEKAQEQTRQLLEDREEHVrklklELEERYQEtlKAEKQSWLKAQAAgATQVEHESRQKL 794
Cdd:TIGR02168 779 EAE----AEIEELEAQIEQLKEELKALREALDELRAELT-----LLNEEAAN--LRERLESLERRIA-ATERRLEDLEEQ 846
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 795 IQQLEEEwQSKLNHSLPARRKATSDCGSQTDQA--AYPAAMPNAEALVLAEEQAHQVQQEKELTVKEA------LRKSEV 866
Cdd:TIGR02168 847 IEELSED-IESLAAEIEELEELIEELESELEALlnERASLEEALALLRSELEELSEELRELESKRSELrreleeLREKLA 925
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 867 ELELKyCESIAQKVETAVQNARSRWILELPMLAEYKALLRAQQQEWakQQEVavaHRLslalseakekwKSELQNMKP-N 945
Cdd:TIGR02168 926 QLELR-LEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA--RRRL---KRL-----------ENKIKELGPvN 988
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958766044 946 VASVQELEEkihsLQKELELKDEEvpvavRAELAKARnewnkEKQEEIhkIQEQNEEDYRQFLEDHrNKINE 1017
Cdd:TIGR02168 989 LAAIEEYEE----LKERYDFLTAQ-----KEDLTEAK-----ETLEEA--IEEIDREARERFKDTF-DQVNE 1043
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
601-1070 |
3.50e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.08 E-value: 3.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 601 NREDILRLKNEVEVLQQQNQELKEAEEKLRStnqDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKA--------- 671
Cdd:PTZ00121 1250 NNEEIRKFEEARMAHFARRQAAIKAEEARKA---DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeakkkaee 1326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 672 -QIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQecyLEVCREKDELESTLRKTME--KAQEQTRQLLED 748
Cdd:PTZ00121 1327 aKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAE---KKKEEAKKKADAAKKKAEEkkKADEAKKKAEED 1403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 749 RE--------EHVRKLKLELEERYQETLKAE----------KQSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSL 810
Cdd:PTZ00121 1404 KKkadelkkaAAAKKKADEAKKKAEEKKKADeakkkaeeakKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK 1483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 811 PAR--RKATSDCGSQTDQAAYPA-AMPNAEALVLAEE--QAHQVQQEKELTVKEALRKSEVEL---ELKYCESI-----A 877
Cdd:PTZ00121 1484 KADeaKKKAEEAKKKADEAKKAAeAKKKADEAKKAEEakKADEAKKAEEAKKADEAKKAEEKKkadELKKAEELkkaeeK 1563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 878 QKVETAvQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSE----LQNMKPNVASVQELE 953
Cdd:PTZ00121 1564 KKAEEA-KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEelkkAEEEKKKVEQLKKKE 1642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 954 EKihSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQEQNEEDYRQFL--EDHRNKINEVLTAAKEDfvKQKT 1031
Cdd:PTZ00121 1643 AE--EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeAEEAKKAEELKKKEAEE--KKKA 1718
|
490 500 510
....*....|....*....|....*....|....*....
gi 1958766044 1032 ELLLQKETEFQACLDQSRKEwtlQEAQRTQLEVHRYEED 1070
Cdd:PTZ00121 1719 EELKKAEEENKIKAEEAKKE---AEEDKKKAEEAKKDEE 1754
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
623-1284 |
4.19e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 4.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 623 KEAEEKLRSTNQ------DLCNQMRQMVQEFDHDKQEAvdrceRTYQqhheAMKAQIRESLLAKHAAEKQHLSEVYEGTQ 696
Cdd:COG1196 175 EEAERKLEATEEnlerleDILGELERQLEPLERQAEKA-----ERYR----ELKEELKELEAELLLLKLRELEAELEELE 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 697 SQLRSDLDKLNKEVAAVQECYLEVCREKDELEsTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEKQSWL 776
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELE-ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 777 KAQAAGATQVEHESRQKLIQQLEEEwQSKLNHSLPARRKAtsdcgsqtdqaaypaampnAEALVLAEEQAHQVQQEKELT 856
Cdd:COG1196 325 LAELEEELEELEEELEELEEELEEA-EEELEEAEAELAEA-------------------EEALLEAEAELAEAEEELEEL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 857 VKEALRKSEVELELKYCESIAQKVETAVQNARSRwilelpmLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKEKwk 936
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLERLER-------LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE-- 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 937 selqnmkpnvASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEWnkekqeeihkIQEQNEEDYRQFLEDHRNKIN 1016
Cdd:COG1196 456 ----------EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL----------LLLEAEADYEGFLEGVKAALL 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 1017 EVLTAAKEDFVKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEEDILTVLDFLLRDTQLEYDGDSQGKQLL 1096
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARG 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 1097 EVMSVCSskwtSVQYFEKVKACIHKALQDTLSLLIDNIASEREKRNVVKTSADAVSWNTGQGDSGVPAPLpvSTSGPCAQ 1176
Cdd:COG1196 596 AIGAAVD----LVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS--LTGGSRRE 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 1177 SSALLEAEAETDKKIFEmkdlccghcfQELEKEKQECQDLRRKLEKSRRHLQHLERTHKATVEKLGEENSRVVEELIEEN 1256
Cdd:COG1196 670 LLAALLEAEAELEELAE----------RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
650 660
....*....|....*....|....*...
gi 1958766044 1257 HDMKNKLETLRALCRTPPQSLSAGAAES 1284
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELER 767
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
305-1071 |
5.14e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 5.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 305 FKVSEEKLTKKLRTTEITLE-------SLKQQLVELH-HSESLQRAREQHESV----VAGLTQKYEEqvscLQKNLDTTI 372
Cdd:TIGR02168 170 YKERRKETERKLERTRENLDrledilnELERQLKSLErQAEKAERYKELKAELreleLALLVLRLEE----LREELEELQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 373 TALQEQEDVCTRLKDHVQQLERNQEAVRLEKTEL---INRLTRSLEDSQKQCAHLLQSGSVHEVTQLQLQLQQAQKAHIL 449
Cdd:TIGR02168 246 EELKEAEEELEELTAELQELEEKLEELRLEVSELeeeIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 450 --SESMNKALQEELTGLKEeislyesaaELGVLPGDVEGdLSVELTEscvglgiKNVSWKQSKANSVAQQEPPNEKLSKd 527
Cdd:TIGR02168 326 eeLESKLDELAEELAELEE---------KLEELKEELES-LEAELEE-------LEAELEELESRLEELEEQLETLRSK- 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 528 evILKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLWLDSPEAINREDILR 607
Cdd:TIGR02168 388 --VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 608 LKNEVEVLQQQNQELKEAEEKLRStNQDLCNQMRQMVQEFDHDKQEAVD----------------RCERTYQQhheAMKA 671
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQA-RLDSLERLQENLEGFSEGVKALLKnqsglsgilgvlseliSVDEGYEA---AIEA 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 672 QIRESL-----------------LAKHAAEKQHLSEVYEGTQSQLRSDldklNKEVAAVQECYLEVCREKDELESTLRKT 734
Cdd:TIGR02168 542 ALGGRLqavvvenlnaakkaiafLKQNELGRVTFLPLDSIKGTEIQGN----DREILKNIEGFLGVAKDLVKFDPKLRKA 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 735 ME-------------KAQEQTRQLleDREEHVRKLKLEL-----------EERYQETLKAEKQ-SWLKAQAAGATQVEHE 789
Cdd:TIGR02168 618 LSyllggvlvvddldNALELAKKL--RPGYRIVTLDGDLvrpggvitggsAKTNSSILERRREiEELEEKIEELEEKIAE 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 790 SRQKLiQQLEEEwQSKLNHSLPARRKATSDCGSQTDQAAYPAAMPNAEALVLAEEQAHQVQQEKELTVKEAL---RKSEV 866
Cdd:TIGR02168 696 LEKAL-AELRKE-LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEleeRLEEA 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 867 ELELKYCESIAQKVETAVQNARSRWILELPMLAEYKALL-----RAQQQEWAKQQEVAVAHRLSLALSEAKEKWKSELQN 941
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtllneEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 942 MKPNVASVQELEEKIHSLQKELELKDEEvpvavRAELAKARNEWNKEKQEEIHKIQEQNE-----EDYRQFLEDHRNKIN 1016
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNE-----RASLEEALALLRSELEELSEELRELESkrselRRELEELREKLAQLE 928
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*
gi 1958766044 1017 EVLTAAKEDFVKQKTELLLQKETEFQAclDQSRKEWTLQEAQRTQLEVHRYEEDI 1071
Cdd:TIGR02168 929 LRLEGLEVRIDNLQERLSEEYSLTLEE--AEALENKIEDDEEEARRRLKRLENKI 981
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
617-1029 |
6.17e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 6.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 617 QQNQELKEAEEKLRSTNQDLCNQMRQMVQEfDHDKQEAVDRCERTYQQHHEAMKAQI---RESLLAKHAAEKQHLSEVYE 693
Cdd:PTZ00121 1360 EAAEEKAEAAEKKKEEAKKKADAAKKKAEE-KKKADEAKKKAEEDKKKADELKKAAAakkKADEAKKKAEEKKKADEAKK 1438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 694 GTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTME---------KAQEQTRQLLEDREEHVRKLKLELEERY 764
Cdd:PTZ00121 1439 KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEakkadeakkKAEEAKKKADEAKKAAEAKKKADEAKKA 1518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 765 QETLKAE--KQSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAYPAAMPNA---EAL 839
Cdd:PTZ00121 1519 EEAKKADeaKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEArieEVM 1598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 840 VLAEE----QAHQVQQEKELTVK-EALRKSEVELelKYCESIAQKVETAVQNArsrwilELPMLAEYKALLRAQQQEWAK 914
Cdd:PTZ00121 1599 KLYEEekkmKAEEAKKAEEAKIKaEELKKAEEEK--KKVEQLKKKEAEEKKKA------EELKKAEEENKIKAAEEAKKA 1670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 915 QQEVAVAHRLSLAlSEAKEKWKSELQNMKPNVASVQELEEKI-HSLQKELELKDEEVPVAVRAELAKARNEWNKEKQEEI 993
Cdd:PTZ00121 1671 EEDKKKAEEAKKA-EEDEKKAAEALKKEAEEAKKAEELKKKEaEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749
|
410 420 430
....*....|....*....|....*....|....*.
gi 1958766044 994 HKiqEQNEEDYRQFLEDHRNKINEVLTAAKEDFVKQ 1029
Cdd:PTZ00121 1750 KK--DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
722-1070 |
8.04e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 57.67 E-value: 8.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 722 REKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERyqETLKAEKQSWLKAQAAGATQVEHEsrQKLIQQLEEE 801
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDY--LKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 802 WQSKLNHSLparrkatsdcgsqtdqaaypaampNAEALVLAEEQAHQ--VQQEKELTVKEALRKSEVELELKYCESIAQK 879
Cdd:pfam02463 242 LQELLRDEQ------------------------EEIESSKQEIEKEEekLAQVLKENKEEEKEKKLQEEELKLLAKEEEE 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 880 VETAVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAKekwKSELQNMKPNVASVQELEEKIHSL 959
Cdd:pfam02463 298 LKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIK---REAEEEEEEELEKLQEKLEQLEEE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 960 QKELELKDEEVPVAVRAELAKARNEWNKEKQE--EIHKIQEQNEEDYR---QFLEDHRNKINEVLTAAKEDFVKQKTELL 1034
Cdd:pfam02463 375 LLAKKKLESERLSSAAKLKEEELELKSEEEKEaqLLLELARQLEDLLKeekKEELEILEEEEESIELKQGKLTEEKEELE 454
|
330 340 350
....*....|....*....|....*....|....*.
gi 1958766044 1035 LQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEED 1070
Cdd:pfam02463 455 KQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
233-477 |
1.53e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 1.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 233 KAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 312
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 313 TKKLRTTEITLESLKQQLVELHHS-ESLQRAREQHESVVAGLTQKYEEQVSCLQKNLDTTITALQEQEDVCTRLKDHVQQ 391
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEElEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 392 LERNQEAVRLEKTELINRLT--RSLEDSQKQCAHLLQSGSVHEVTQLQLQLQQAQKAHILSESMNKALQEELTGLKEEIS 469
Cdd:COG1196 402 LEELEEAEEALLERLERLEEelEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
....*...
gi 1958766044 470 LYESAAEL 477
Cdd:COG1196 482 LLEELAEA 489
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
236-801 |
2.65e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 2.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 236 ERQLDSLvEKlnDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKLTKK 315
Cdd:COG1196 199 ERQLEPL-ER--QAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 316 LRTTEITLESLKQQLVELhhSESLQRAREQHESVVAGLTQKYEEQVScLQKNLDTTITALQEQEDVCTRLKDHVQQLERN 395
Cdd:COG1196 276 LEELELELEEAQAEEYEL--LAELARLEQDIARLEERRRELEERLEE-LEEELAELEEELEELEEELEELEEELEEAEEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 396 QEAVRLEKTELINRLTRSLEDSQKQcAHLLQSGSVHEVTQLQLQLQQAQKAHILSESMNKALQEELTGLKEEISLYESAA 475
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEA-EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 476 ELGVLPGDVEGDLSVELTescvglgiknvswkqskansvaqqeppnEKLSKDEVILKLKTQVQRLLSSNSMKRHLVSELQ 555
Cdd:COG1196 432 ELEEEEEEEEEALEEAAE----------------------------EEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 556 RDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLWLDSPEAINREDILRLKNEVE-----VLQQQNQELKEAEEKLR 630
Cdd:COG1196 484 EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEaalaaALQNIVVEDDEVAAAAI 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 631 STNQDLcnqmRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLDKLNKEV 710
Cdd:COG1196 564 EYLKAA----KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 711 AAVQECYLEVCREKDELESTLRKTMEKAQEQTRQLLEDREEhvRKLKLELEERYQETLKAEKQSWLKAQAAGATQVEHES 790
Cdd:COG1196 640 VTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE--LEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
570
....*....|.
gi 1958766044 791 RQKLIQQLEEE 801
Cdd:COG1196 718 EEELEEEALEE 728
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
233-801 |
6.83e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 6.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 233 KAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 312
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 313 TKKLRTTEITLESLKQQLVELH--------HSESLQRAREQHESVVAGLTQKYEEQVSCLQKNLDTTITALQEQEDVCTR 384
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEeelaeleeELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 385 LKDHVQQLERNQEAvRLEKTELINRLTRSLEDSQKQCAHLLQSGSVHEVTQLQLQLQQAQKAHILSESMNKALQEELTGL 464
Cdd:COG1196 381 LEELAEELLEALRA-AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 465 KEEISLYESAAELgvlpgdvegdlsvELTESCVGLGIKNVSWKQSKANSVAQQEPPNEKLSKDEVILKLKTQVQRLLSSN 544
Cdd:COG1196 460 ALLELLAELLEEA-------------ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 545 SMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLWLDSPEAINREDILRLKNEVEVLQQQNQELKE 624
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 625 AEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLD 704
Cdd:COG1196 607 DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 705 KLNKEVAAVqecylevcREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEKQSWLKAQAAGAT 784
Cdd:COG1196 687 RLAEEELEL--------EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE 758
|
570
....*....|....*..
gi 1958766044 785 QVEHESRQKLIQQLEEE 801
Cdd:COG1196 759 PPDLEELERELERLERE 775
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
275-771 |
7.30e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 7.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 275 RESQKLF-QSGKEREMQLEaQIHALETQIEAFKVSEE---KLTKKLRTTEITLESLKQQLVEL-HHSESLQRA------- 342
Cdd:COG4717 53 KEADELFkPQGRKPELNLK-ELKELEEELKEAEEKEEeyaELQEELEELEEELEELEAELEELrEELEKLEKLlqllply 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 343 --REQHESVVAGLTQKYEEqvscLQKNLDTTITALQEQEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQ 420
Cdd:COG4717 132 qeLEALEAELAELPERLEE----LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 421 CAHLlqsgsvHEVTQLQLQLQQAQKAHILSESMNKALQEELTGLKEEISLYESAAELGVLPGDVEGDLSVELTE-----S 495
Cdd:COG4717 208 LAEL------EEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIagvlfL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 496 CVGLGIKNVSWKQSKANSVAQQEPPNEKLSKDEVI--LKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKD 573
Cdd:COG4717 282 VLGLLALLFLLLAREKASLGKEAEELQALPALEELeeEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 574 SdrgmeTKTETSEKTTNQLwLDSPEAINREDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQE 653
Cdd:COG4717 362 E-----LQLEELEQEIAAL-LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELE 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 654 AVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQ--ECYLEVCREKDElESTL 731
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKlaLELLEEAREEYR-EERL 514
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1958766044 732 RKTMEKAQEQTRQLLEDREEHVR---KLKLELEERYQETLKAE 771
Cdd:COG4717 515 PPVLERASEYFSRLTDGRYRLIRideDLSLKVDTEDGRTRPVE 557
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
722-1069 |
1.69e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.22 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 722 REKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEKQSwlkaQAAGATQVEHESRQKLIQQLEEE 801
Cdd:PTZ00121 1088 RADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDAR----KAEEARKAEDAKRVEIARKAEDA 1163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 802 WQSKLNHSLPARRKAtsDCGSQTDQAAYPAAMPNAEALVLAEE--QAHQVQQEKELTVKEALRKSEvelELKYCESIAQK 879
Cdd:PTZ00121 1164 RKAEEARKAEDAKKA--EAARKAEEVRKAEELRKAEDARKAEAarKAEEERKAEEARKAEDAKKAE---AVKKAEEAKKD 1238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 880 VETAVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVavahRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSL 959
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA----RKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 960 QKELELKDEEVPVAVRAELAKARNEWNKEKQE-----------EIHKIQEQNEEDYRQfLEDHRNKINEVLTAAKE---- 1024
Cdd:PTZ00121 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEaakaeaeaaadEAEAAEEKAEAAEKK-KEEAKKKADAAKKKAEEkkka 1393
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1958766044 1025 DFVKQKTELLLQKETEFQACLDQSRKEwtlQEAQRTQLEVHRYEE 1069
Cdd:PTZ00121 1394 DEAKKKAEEDKKKADELKKAAAAKKKA---DEAKKKAEEKKKADE 1435
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
697-1049 |
1.75e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 697 SQLRSDLDKLNKEVAAVQEcYLEVCREKDELESTLR----KTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEK 772
Cdd:TIGR02169 194 DEKRQQLERLRREREKAER-YQALLKEKREYEGYELlkekEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 773 qswLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSlparRKATSDCGSQTDQAaypaampnAEALVLAEEQAHQVQQE 852
Cdd:TIGR02169 273 ---LLEELNKKIKDLGEEEQLRVKEKIGELEAEIASL----ERSIAEKERELEDA--------EERLAKLEAEIDKLLAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 853 KElTVKEALRKSEVELElkycesiaqKVETAVQNARsrwilelpmlAEYKALLRAQQQEWAKQQEVAVAHRlslALSEAK 932
Cdd:TIGR02169 338 IE-ELEREIEEERKRRD---------KLTEEYAELK----------EELEDLRAELEEVDKEFAETRDELK---DYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 933 EKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEevpvAVRAELAKARNEwNKEKQEEIHKIQEQNE------EDYRQ 1006
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRLSEELADLNAAIA----GIEAKINELEEE-KEDKALEIKKQEWKLEqlaadlSKYEQ 469
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1958766044 1007 FLEDHRNKINEVltaakEDFVKQKTELLLQKETEFQACLDQSR 1049
Cdd:TIGR02169 470 ELYDLKEEYDRV-----EKELSKLQRELAEAEAQARASEERVR 507
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
225-748 |
1.81e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 1.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 225 IIQLQVLNKAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEA 304
Cdd:COG1196 255 LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 305 FKVSEEKLTKKLRTTEITLESLKQQLVELhhSESLQRAREQHESVVAGLTQKYEEQVSCLQ------KNLDTTITALQEQ 378
Cdd:COG1196 335 LEEELEELEEELEEAEEELEEAEAELAEA--EEALLEAEAELAEAEEELEELAEELLEALRaaaelaAQLEELEEAEEAL 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 379 EDVCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSVHEVTQLQLQLQQAQKAHILSESMNKALQ 458
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 459 EELtgLKEEISLYESAAE-----------------LGVLPGDVEGDLSVELTESCVGLGIKNVS-----------WKQSK 510
Cdd:COG1196 493 LLL--LLEAEADYEGFLEgvkaalllaglrglagaVAVLIGVEAAYEAALEAALAAALQNIVVEddevaaaaieyLKAAK 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 511 A-------NSVAQQEPPNEKLSKDEVILKLKTQVQRLLSSNSMKRHLVSE--LQRDLRDCRETMEALQQSKDSDRGMETK 581
Cdd:COG1196 571 AgratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDtlLGRTLVAARLEAALRRAVTLAGRLREVT 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 582 TETSEKTTNQLWLDSPEAINREDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERT 661
Cdd:COG1196 651 LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 662 YQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEgtqSQLRSDLDKLNKEV--------AAVQEcYLEVCREKDELES---- 729
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPPDL---EELERELERLEREIealgpvnlLAIEE-YEELEERYDFLSEqred 806
|
570 580
....*....|....*....|....*
gi 1958766044 730 ------TLRKTMEKAQEQTRQLLED 748
Cdd:COG1196 807 leeareTLEEAIEEIDRETRERFLE 831
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
606-1268 |
1.81e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 1.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 606 LRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCERTyqqhheAMKAQIRESLLAKHAaEK 685
Cdd:TIGR02168 291 YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL------EELKEELESLEAELE-EL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 686 QHLSEVYEGTQSQLRSDLDKLNKEVAAVQEcylEVCREKDELEStLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQ 765
Cdd:TIGR02168 364 EAELEELESRLEELEEQLETLRSKVAQLEL---QIASLNNEIER-LEARLERLEDRRERLQQEIEELLKKLEEAELKELQ 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 766 ETLKAEKQSWLKAQAAGATQVEHESR-QKLIQQLEEEWQSKLN--HSLPARRKATSDCGSQTDQAAYPAAMPNAEALVLA 842
Cdd:TIGR02168 440 AELEELEEELEELQEELERLEEALEElREELEEAEQALDAAERelAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 843 EE-----QAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNARSRW-ILELPMLAEYKalLRAQQQEWAKQQ 916
Cdd:TIGR02168 520 GIlgvlsELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVtFLPLDSIKGTE--IQGNDREILKNI 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 917 E--------------------------VAVAHRLSLALSEAKEKWKSEL------------------------------Q 940
Cdd:TIGR02168 598 EgflgvakdlvkfdpklrkalsyllggVLVVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggsaktnssilerrR 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 941 NMKPNVASVQELEEKIHSLQKEL-------ELKDEEVPVAVRAELAKARNEWNKEKQEEIHKIQEQNEEDYRQFLEDHRN 1013
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALaelrkelEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 1014 KINEVLTAAKEDFVKQKTEL--LLQKETEFQACLDQSRKEWTLQEAQRTQLevhryeEDILTVLDFLLRDTQLEYDGDSQ 1091
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELaeAEAEIEELEAQIEQLKEELKALREALDEL------RAELTLLNEEAANLRERLESLER 831
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 1092 GKQLLEVMSVCSSKwtsvqyfekvkacIHKALQDTLSLLIDNIASEREKRNVVKTSADAVSwntgqgdsgvpaplpVSTS 1171
Cdd:TIGR02168 832 RIAATERRLEDLEE-------------QIEELSEDIESLAAEIEELEELIEELESELEALL---------------NERA 883
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 1172 GPCAQSSALLEAEAETDKKIFEMKdlccghcfQELEKEKQECQDLRRKLEKSRRHLQHLERTHKATVEKLGEENSRVVEE 1251
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELRELE--------SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEE 955
|
730
....*....|....*..
gi 1958766044 1252 LIEENHDMKNKLETLRA 1268
Cdd:TIGR02168 956 AEALENKIEDDEEEARR 972
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
234-427 |
2.93e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 2.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 234 AKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKLT 313
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 314 KKLRTTEitlESLKQQLVELH------------HSES---LQRAREQHESVVAGLTQKYEEQVScLQKNLDTTITALQEQ 378
Cdd:COG4942 97 AELEAQK---EELAELLRALYrlgrqpplalllSPEDfldAVRRLQYLKYLAPARREQAEELRA-DLAELAALRAELEAE 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958766044 379 EDVCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQS 427
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
285-964 |
5.71e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 5.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 285 KEREMQLEAQIHALEtqIEAFKVSEEKLTKKLRTTEITLESLKQQLVELHhsESLQRAREQHEsvvagltqkyeeqvscl 364
Cdd:COG1196 219 KEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELE--AELEELRLELE----------------- 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 365 qkNLDTTITALQEQEDvctrlkDHVQQLERNQEAVRLEKtELINRLTRSLEDSQKQCAHLLQSgsvhevtqlqlqlqqaq 444
Cdd:COG1196 278 --ELELELEEAQAEEY------ELLAELARLEQDIARLE-ERRRELEERLEELEEELAELEEE----------------- 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 445 kahilsesmNKALQEELTGLKEEISLYESAAELgvlpgdvegdlsveltescvglgiKNVSWKQSKANSVAQQEppnEKL 524
Cdd:COG1196 332 ---------LEELEEELEELEEELEEAEEELEE------------------------AEAELAEAEEALLEAEA---ELA 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 525 SKDEVILKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSdrgmetktetsekttnqlwLDSPEAINRED 604
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE-------------------LEEALAELEEE 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 605 ILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAvdrcertyqqhheamkAQIRESLLAKHAAE 684
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL----------------AEAAARLLLLLEAE 500
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 685 KQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYLEV-----CREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLE 759
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYeaaleAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLD 580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 760 LEERYQETLKAEKQSWLKAQAAGAT--QVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAypaAMPNAE 837
Cdd:COG1196 581 KIRARAALAAALARGAIGAAVDLVAsdLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTL---EGEGGS 657
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 838 ALVLAEEQAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNARSRwilelpmLAEYKALLRAQQQEWAKQQE 917
Cdd:COG1196 658 AGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA-------EAEEERLEEELEEEALEEQL 730
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 1958766044 918 VAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELE 964
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
277-1040 |
5.85e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.59 E-value: 5.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 277 SQKLFQSGKEREMQLEAQIHALETQIEafkvSEEKLTKKlrtTEITLESLKQQLVELHHS-----------ESLQRAREQ 345
Cdd:TIGR00606 208 ELKYLKQYKEKACEIRDQITSKEAQLE----SSREIVKS---YENELDPLKNRLKEIEHNlskimkldneiKALKSRKKQ 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 346 HESVVAGLTQKYE-------EQVSCLQKNLDTTItalQEQEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTR-SLEDS 417
Cdd:TIGR00606 281 MEKDNSELELKMEkvfqgtdEQLNDLYHNHQRTV---REKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRlQLQAD 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 418 QKQCAHLLQSgsvhevtqlqlqlqqaqkahilSESMNKALQEELTGLKeeislyesaaelgvlpgdvEGDLSVELTESCV 497
Cdd:TIGR00606 358 RHQEHIRARD----------------------SLIQSLATRLELDGFE-------------------RGPFSERQIKNFH 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 498 GLGIKNVSWKQSKANSVAQQEPPNEKLsKDEVILKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRG 577
Cdd:TIGR00606 397 TLVIERQEDEAKTAAQLCADLQSKERL-KQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 578 METKTETSEKTTNQLWLDSPEAINREDILRLKNE-VEVLQQQNQELKEAEEKLRSTnqdlcnQMRQMVQEFDHDKQEAVD 656
Cdd:TIGR00606 476 LDQELRKAERELSKAEKNSLTETLKKEVKSLQNEkADLDRKLRKLDQEMEQLNHHT------TTRTQMEMLTKDKMDKDE 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 657 RCERTYQQHHEAMKAQIRESLLAKHAAEKQHlseVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTME 736
Cdd:TIGR00606 550 QIRKIKSRHSDELTSLLGYFPNKKQLEDWLH---SKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYED 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 737 KAQEQTRQllEDREEHVRKLKLELEERYQETLKAEKQSWLKAQAAGATQVEHES----------RQKLIQQLEEEWQSKL 806
Cdd:TIGR00606 627 KLFDVCGS--QDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSccpvcqrvfqTEAELQEFISDLQSKL 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 807 nHSLPARRKATSDCGSQTDQAaypaampNAEALVLAEEQAHQVQ-QEKEL-TVKEALR---------KSEVELELKYCES 875
Cdd:TIGR00606 705 -RLAPDKLKSTESELKKKEKR-------RDEMLGLAPGRQSIIDlKEKEIpELRNKLQkvnrdiqrlKNDIEEQETLLGT 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 876 IAQKVETAVQNARSRWILElPMLAEYKALLRAQQQEWAKQQEVAVA---HRLSLALSEAKEKWKSELQNMKPNVASVQEL 952
Cdd:TIGR00606 777 IMPEEESAKVCLTDVTIME-RFQMELKDVERKIAQQAAKLQGSDLDrtvQQVNQEKQEKQHELDTVVSKIELNRKLIQDQ 855
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 953 EEKIHSLQKEL-ELKDEEVPVAVRAELAKARNEWNKEKQEEihkIQEQNEEdyrqfLEDHRNKINEvLTAAKEDFVKQKT 1031
Cdd:TIGR00606 856 QEQIQHLKSKTnELKSEKLQIGTNLQRRQQFEEQLVELSTE---VQSLIRE-----IKDAKEQDSP-LETFLEKDQQEKE 926
|
....*....
gi 1958766044 1032 ELLLQKETE 1040
Cdd:TIGR00606 927 ELISSKETS 935
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
233-416 |
7.16e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 7.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 233 KAKERQLDSLVEKLNDRERQIRYLnhqllivQDEKDGLALSLRESQKLFQSGKERE--MQLEAQIHALETQIEAFKVSE- 309
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEAL-------EAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLDASSd 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 310 --EKLTKKLRTTEITLESLKQQLVELHHSES-LQRAREQHESVVAGLTQKYEEQVSCLQKNLDTTITALQEQEDVCTRLK 386
Cdd:COG4913 686 dlAALEEQLEELEAELEELEEELDELKGEIGrLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVER 765
|
170 180 190
....*....|....*....|....*....|
gi 1958766044 387 DHVQQLERNQEAVRLEKTELINRLTRSLED 416
Cdd:COG4913 766 ELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
198-569 |
1.03e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 198 EIAGSDMFEGLQQQFLGANENSAENIHIIQLQVlnKAKERQLDSLVEklnDRERQIRYlnhqlLIVQDEKDGLALSLRES 277
Cdd:TIGR02169 161 EIAGVAEFDRKKEKALEELEEVEENIERLDLII--DEKRQQLERLRR---EREKAERY-----QALLKEKREYEGYELLK 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 278 QKlfQSGKEREMQLEAQIHALETQIEAFKVSEEKLTKKLRTTEITLESLKQQLVELHHSESLQRAREQHEsvVAGLTQKY 357
Cdd:TIGR02169 231 EK--EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGE--LEAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 358 EEQVSCLQKNLDTTITALQEQEDVCTRLKDHVQQLERNQEAVRLEKTELINRLtrsleDSQKQCAHLLQSgsvhevtqlq 437
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY-----AELKEELEDLRA---------- 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 438 lQLQQAQKAHILSESMNKALQEELTGLKEEIslYESAAELGVLpgdveGDLSVELTEScvGLGIKNvswkqskANSVAQQ 517
Cdd:TIGR02169 372 -ELEEVDKEFAETRDELKDYREKLEKLKREI--NELKRELDRL-----QEELQRLSEE--LADLNA-------AIAGIEA 434
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1958766044 518 EPPNEKLSKDEVILKLKTQVQRLLSSNSMKrhlvSELQRDLRDCRETMEALQ 569
Cdd:TIGR02169 435 KINELEEEKEDKALEIKKQEWKLEQLAADL----SKYEQELYDLKEEYDRVE 482
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
725-978 |
1.30e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 725 DELESTlRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEwqs 804
Cdd:COG4913 235 DDLERA-HEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAE--- 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 805 klnhslparrkaTSDCGSQTDQAaypaampnAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELKycESIAQKVETAV 884
Cdd:COG4913 311 ------------LERLEARLDAL--------REELDELEAQIRGNGGDRLEQLEREIERLERELEER--ERRRARLEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 885 QNARSRWILELPMLAEYKALLRAQQQEWAK-----QQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASV-QELEEKIHS 958
Cdd:COG4913 369 AALGLPLPASAEEFAALRAEAAALLEALEEelealEEALAEAEAALRDLRRELRELEAEIASLERRKSNIpARLLALRDA 448
|
250 260
....*....|....*....|
gi 1958766044 959 LQKELELKDEEVPVAvrAEL 978
Cdd:COG4913 449 LAEALGLDEAELPFV--GEL 466
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
603-1375 |
1.96e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 1.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 603 EDILR-LKNEVEVLQQQnqelKEAEEKLRstnqdlcnqmRQMVQEFDHDKQEAVDRCERtYQQHHEAMKAQIRE--SLLA 679
Cdd:TIGR02168 192 EDILNeLERQLKSLERQ----AEKAERYK----------ELKAELRELELALLVLRLEE-LREELEELQEELKEaeEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 680 KHAAEKQhlseVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQ--EQTRQLLEDREEHVRKLK 757
Cdd:TIGR02168 257 ELTAELQ----ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAnlERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 758 LELEERYQEtLKAEKQSwLKAQAAGAtQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAypaampnae 837
Cdd:TIGR02168 333 DELAEELAE-LEEKLEE-LKEELESL-EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN--------- 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 838 ALVLAEEQAHQVQ--QEKELTVKEALRKSEVELELKYCESIAQKVETAVQNARSRWILELPMLAEYKALLRAQQQEWAKQ 915
Cdd:TIGR02168 401 EIERLEARLERLEdrRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 916 QEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKARNEW---NKEKQEE 992
Cdd:TIGR02168 481 ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVvveNLNAAKK 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 993 IHKIQEQNEEDYRQFLE-----DHRNKINEVLTAAKEDFVKQKTELLLQKETEFQAC----LDQSRKEWTLQEAQRtQLE 1063
Cdd:TIGR02168 561 AIAFLKQNELGRVTFLPldsikGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsylLGGVLVVDDLDNALE-LAK 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 1064 VHRYEEDILTVLDFLLRDTQLEYDGDSQGKQ-LLEVMSVCSSKWTSVQYFEKVKACIHKALQDTLSLLiDNIASEREKRN 1142
Cdd:TIGR02168 640 KLRPGYRIVTLDGDLVRPGGVITGGSAKTNSsILERRREIEELEEKIEELEEKIAELEKALAELRKEL-EELEEELEQLR 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 1143 VVKTSADAVSWNTGQGDSGVPAplpvsTSGPCAQSSALLEAEAETDKKIFEMKDLCCGHCFQELEKEKQECQDLRRKLEK 1222
Cdd:TIGR02168 719 KELEELSRQISALRKDLARLEA-----EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 1223 SRRHLQHLERTHKATVEKLGEENSRV------VEELIEENHDMKNKLETLRALCRTPPQSLSAGAAESARLlcsGQALEE 1296
Cdd:TIGR02168 794 LKEELKALREALDELRAELTLLNEEAanlrerLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL---EELIEE 870
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958766044 1297 LRGQyIKAVKKIKRDMLRYIQESKERATEMvkAEVLRERQDTARKMHKYYLSCLQQILEDNGKEEGAEKKIMSAASKLA 1375
Cdd:TIGR02168 871 LESE-LEALLNERASLEEALALLRSELEEL--SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
615-1086 |
2.20e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 615 LQQQNQELKEAEEKLRStnqdlCNQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHLSEvyeg 694
Cdd:COG4717 73 LKELEEELKEAEEKEEE-----YAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAE---- 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 695 tqsqLRSDLDKLNKEVAAVQEcyleVCREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEE--RYQETLKAEK 772
Cdd:COG4717 144 ----LPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEElqQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 773 QSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPArrkATSDCGSQTDQAAYPAAMPNAEALVLAEEQAHQVQQE 852
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIA---AALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLL 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 853 KELTVKEALRKSEVELELKYCESIAQKvetAVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEVAVAHRLSLALSEAK 932
Cdd:COG4717 293 LAREKASLGKEAEELQALPALEELEEE---ELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELE 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 933 EKWKSELQNMkpNVASVQELEEKIHSLQKELELkdeevpvavRAELAKARNEWNKEKQEEIHKIQEQNEEDYRQFLEDHR 1012
Cdd:COG4717 370 QEIAALLAEA--GVEDEEELRAALEQAEEYQEL---------KEELEELEEQLEELLGELEELLEALDEEELEEELEELE 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 1013 NKINEvltaakedfVKQKTELLLQKETEFQACLDQSRKEWTLQEA----QRTQLEVHRYEED--ILTVLDFLLRDTQLEY 1086
Cdd:COG4717 439 EELEE---------LEEELEELREELAELEAELEQLEEDGELAELlqelEELKAELRELAEEwaALKLALELLEEAREEY 509
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
227-762 |
2.87e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 2.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 227 QLQVLNKAKER---QLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIE 303
Cdd:COG1196 261 ELAELEAELEElrlELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 304 AFKVSEEKLTKKLRTTEITLESLKQQLVELHHS-ESLQRAREQHESVVAGLTQKYEEQVSCLQKNLDTTITALQEQEDVC 382
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAElAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 383 TRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSVHEVTQLQLQLQQAQKAHILSESMNKALQEELT 462
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 463 GLKEEISLYESAAELGVLPGDVEGDLSVELT-ESCVGLGIKNVswkqskANSVAQQEPPNEKLSKDEVILKLKTQVQR-- 539
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGvEAAYEAALEAA------LAAALQNIVVEDDEVAAAAIEYLKAAKAGra 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 540 -LLSSNSMKRHLVSELQRDLRDcRETMEALQQSKDSDRGMETKTETSEKTTNQLWLDSPEAINREDILRLKNEVEVLQQQ 618
Cdd:COG1196 575 tFLPLDKIRARAALAAALARGA-IGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEG 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 619 NQELKEAEEKLRSTNQDLCNQMRQMVQEfdhdkQEAVDRCERTYQQHHEAMKAQIRESLLAKHAAEKQHlsevyegtQSQ 698
Cdd:COG1196 654 EGGSAGGSLTGGSRRELLAALLEAEAEL-----EELAERLAEEELELEEALLAEEEEERELAEAEEERL--------EEE 720
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958766044 699 LRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEqtrqllEDREEHVRKLKLELEE 762
Cdd:COG1196 721 LEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL------EELERELERLEREIEA 778
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
228-801 |
2.91e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 2.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 228 LQVLNKAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEremqleaQIHALETQIEAFKV 307
Cdd:TIGR04523 59 LDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKE-------QKNKLEVELNKLEK 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 308 SEEKLTKKLRTTEITLESLKQQLVELhhSESLQRAREQHESVVAGLTqKYEEQVSCLQKNLD----------TTITALQE 377
Cdd:TIGR04523 132 QKKENKKNIDKFLTEIKKKEKELEKL--NNKYNDLKKQKEELENELN-LLEKEKLNIQKNIDkiknkllkleLLLSNLKK 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 378 QEDVCTRLKDHVQQLERNQEAVRLEKTEL---INRLTRSLEDSQKQCAHLLQSgSVHEVTQLQLQLQQAQKAHILSESMN 454
Cdd:TIGR04523 209 KIQKNKSLESQISELKKQNNQLKDNIEKKqqeINEKTTEISNTQTQLNQLKDE-QNKIKKQLSEKQKELEQNNKKIKELE 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 455 KALQEeltgLKEEISlyesaaelgVLPGDVEGDLSVELTEScvglgIKNVswKQSKANSVAQQEPPNEKLSK-DEVILKL 533
Cdd:TIGR04523 288 KQLNQ----LKSEIS---------DLNNQKEQDWNKELKSE-----LKNQ--EKKLEEIQNQISQNNKIISQlNEQISQL 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 534 KTQVQRLLSSNsmkrhlvSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLwLDSPEAINREdilrLKNEVE 613
Cdd:TIGR04523 348 KKELTNSESEN-------SEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESK-IQNQEKLNQQ----KDEQIK 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 614 VLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEfDHDKQEAVDRCERTyqqhHEAMKAQIrESLLAKHAAEKQHLsevyE 693
Cdd:TIGR04523 416 KLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ-DSVKELIIKNLDNT----RESLETQL-KVLSRSINKIKQNL----E 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 694 GTQSQLR---SDLDKLNKEVAAVQECYLEVCREKDELESTLRKtMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKA 770
Cdd:TIGR04523 486 QKQKELKskeKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK-LESEKKEKESKISDLEDELNKDDFELKKENLEKEID 564
|
570 580 590
....*....|....*....|....*....|...
gi 1958766044 771 EKQSWLKA--QAAGATQVEHESRQKLIQQLEEE 801
Cdd:TIGR04523 565 EKNKEIEElkQTQKSLKKKQEEKQELIDQKEKE 597
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
217-627 |
4.99e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.18 E-value: 4.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 217 ENSAENIHIIQLQVLNKAKErqLDSLVEKLNDRERQIRylnhQLLIVQDEKDGLALSLRESQKLFQSGKEREMQL----- 291
Cdd:pfam05483 373 EKNEDQLKIITMELQKKSSE--LEEMTKFKNNKEVELE----ELKKILAEDEKLLDEKKQFEKIAEELKGKEQELifllq 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 292 --EAQIHALETQIEAFKVSEEKLTKKLRTTEITLESLKQQLVEL-HHSESL---QRAREQHESVVAGLTQKYEEQVSCLQ 365
Cdd:pfam05483 447 arEKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELtAHCDKLlleNKELTQEASDMTLELKKHQEDIINCK 526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 366 KNLDTTITALQEQEDVCTRLKDhvqQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHLLQSGSVHEVTQLQ---LQLQQ 442
Cdd:pfam05483 527 KQEERMLKQIENLEEKEMNLRD---ELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKcnnLKKQI 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 443 AQKAHILSE--SMNKALQEELTGLKEEISLYESAAElgvlpgdvegDLSVELTESCVGLGIKNVSWKQSKANSVAQQEPP 520
Cdd:pfam05483 604 ENKNKNIEElhQENKALKKKGSAENKQLNAYEIKVN----------KLELELASAKQKFEEIIDNYQKEIEDKKISEEKL 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 521 NEKLSKDEVILKLKTQVQRLLSSNSmkRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTnQLWLDSPEAI 600
Cdd:pfam05483 674 LEEVEKAKAIADEAVKLQKEIDKRC--QHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSA-KAALEIELSN 750
|
410 420
....*....|....*....|....*...
gi 1958766044 601 NREDILRLKNEVEVLQQQNQELK-EAEE 627
Cdd:pfam05483 751 IKAELLSLKKQLEIEKEEKEKLKmEAKE 778
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
234-396 |
7.95e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 7.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 234 AKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRE-SQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKL 312
Cdd:COG4913 285 FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDElEAQIRGNGGDRLEQLEREIERLERELEERERRRARL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 313 TKKLRTTEITLESLKQQLVELHhsESLQRAREQHESVVAGLTQKYEEqvsclqknLDTTITALQEQEDvctRLKDHVQQL 392
Cdd:COG4913 365 EALLAALGLPLPASAEEFAALR--AEAAALLEALEEELEALEEALAE--------AEAALRDLRRELR---ELEAEIASL 431
|
....
gi 1958766044 393 ERNQ 396
Cdd:COG4913 432 ERRK 435
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
236-800 |
2.59e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 236 ERQLDSLvEKLNDRERQIRYLNHQLLIVQDEKDglALSLRESQKLFQSGKEREMQLEAQIHALETQIEAFKVSEEKLTKK 315
Cdd:COG4913 248 REQIELL-EPIRELAERYAAARERLAELEYLRA--ALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 316 LRTTE--------ITLESLKQQLvelhhsESLQRAREQHESVVAgltqKYEEQVSCLQKNLDTTITALQEQEDvctRLKD 387
Cdd:COG4913 325 LDELEaqirgnggDRLEQLEREI------ERLERELEERERRRA----RLEALLAALGLPLPASAEEFAALRA---EAAA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 388 HVQQLERNQEAVRLEKTELINR---LTRSLEDSQKQCAHLLQSGSVHEvtqlqlqlqqaQKAHILSESMNKALQE----- 459
Cdd:COG4913 392 LLEALEEELEALEEALAEAEAAlrdLRRELRELEAEIASLERRKSNIP-----------ARLLALRDALAEALGLdeael 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 460 ----ELTGLKEEISLYESAAElGVL---------PGDVEGDL-----SVELTESCVGLGIKNvswkqskansvAQQEPPN 521
Cdd:COG4913 461 pfvgELIEVRPEEERWRGAIE-RVLggfaltllvPPEHYAAAlrwvnRLHLRGRLVYERVRT-----------GLPDPER 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 522 EKLSKDEVILKLKTQvqrllsSNSMKRHLVSELQR--DLRdCRETMEALQ----------QSKDSDRGMETKTETSEKTT 589
Cdd:COG4913 529 PRLDPDSLAGKLDFK------PHPFRAWLEAELGRrfDYV-CVDSPEELRrhpraitragQVKGNGTRHEKDDRRRIRSR 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 590 NQLWLDSPEAIN--REDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLcnqmrQMVQEFDHDKQEaVDRCERTYQQhHE 667
Cdd:COG4913 602 YVLGFDNRAKLAalEAELAELEEELAEAEERLEALEAELDALQERREAL-----QRLAEYSWDEID-VASAEREIAE-LE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 668 AMKAQIRESLLAKHAAEKQhlsevyegtQSQLRSDLDKLNKEVAAVQecylevcREKDELESTLrKTMEKAQEQTRQLLE 747
Cdd:COG4913 675 AELERLDASSDDLAALEEQ---------LEELEAELEELEEELDELK-------GEIGRLEKEL-EQAEEELDELQDRLE 737
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 1958766044 748 DREEHVRK-LKLELEERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEE 800
Cdd:COG4913 738 AAEDLARLeLRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELER 791
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
621-991 |
2.64e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 621 ELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQ---EAVDRCERTYQQHHEAMKAQirESLLAKHAAEKQHLSEvyegtqs 697
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENrldELSQELSDASRKIGEIEKEI--EQLEQEEEKLKERLEE------- 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 698 qLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQEtlkaekqswLK 777
Cdd:TIGR02169 742 -LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSR---------IE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 778 AQAAgATQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDCGSQTDQAAYPAAMpnaeALVLAEEQAHQVQQEKELTV 857
Cdd:TIGR02169 812 ARLR-EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL----EEELEELEAALRDLESRLGD 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 858 KEALRKsEVELELKYCESIAQKVETAVQNARSRwilelpmLAEYKALLRAQQQEWA------KQQEVAVAHRLSLA-LSE 930
Cdd:TIGR02169 887 LKKERD-ELEAQLRELERKIEELEAQIEKKRKR-------LSELKAKLEALEEELSeiedpkGEDEEIPEEELSLEdVQA 958
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958766044 931 AKEKWKSELQNMKP-NVASVQELEEkihSLQKELELKDE-EVPVAVRAELAKARNEWNKEKQE 991
Cdd:TIGR02169 959 ELQRVEEEIRALEPvNMLAIQEYEE---VLKRLDELKEKrAKLEEERKAILERIEEYEKKKRE 1018
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
341-1099 |
3.99e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 3.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 341 RAREQHESVVAG---LTQKYEEQVSCLQKNLDTTITALQEQEDVCTRLKDHVQQLERNQEAVR--LEKTELINRLTRSLE 415
Cdd:TIGR00618 184 MEFAKKKSLHGKaelLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTqkREAQEEQLKKQQLLK 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 416 DSQKQCAHLLQSGSVHEVTqLQLQLQQAQKAHILSES-----MNKALQEELTGLKEEISLYESAaelgvlpgdvegdlsv 490
Cdd:TIGR00618 264 QLRARIEELRAQEAVLEET-QERINRARKAAPLAAHIkavtqIEQQAQRIHTELQSKMRSRAKL---------------- 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 491 eltescvglgIKNVSWKQSKANSVAQQEPPNEKLSKDEVILKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQ 570
Cdd:TIGR00618 327 ----------LMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQ 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 571 SKDSdrgmeTKTETSEKTTNQLWLDSPEAINREDILRLKNEvEVLQQQNQELKEAEeklrSTNQDLCNQMRQMVQEFDHD 650
Cdd:TIGR00618 397 SLCK-----ELDILQREQATIDTRTSAFRDLQGQLAHAKKQ-QELQQRYAELCAAA----ITCTAQCEKLEKIHLQESAQ 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 651 KQEAVDRCERTYQQHH--EAMKAQIRESLLAKHAAEKQHLSEvyegtqsqlrsdlDKLNKEVAAVQECYLEV-CREKDEL 727
Cdd:TIGR00618 467 SLKEREQQLQTKEQIHlqETRKKAVVLARLLELQEEPCPLCG-------------SCIHPNPARQDIDNPGPlTRRMQRG 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 728 ESTLRKtMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLK-AEKQSWLKAQAAGATQVEHESRQKLIQQLEEEWQS-- 804
Cdd:TIGR00618 534 EQTYAQ-LETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIlTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLac 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 805 -------KLNHSLPARRKATSDCGSQTDQAAYPAAMpNAEALVLAEEQahqvqqekeltVKEALRKSEVELELKYceSIA 877
Cdd:TIGR00618 613 eqhallrKLQPEQDLQDVRLHLQQCSQELALKLTAL-HALQLTLTQER-----------VREHALSIRVLPKELL--ASR 678
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 878 QKVETAVQNARSRWILELPMLAEYKALLRAQQQEWAKQQEvaVAHRLSLALSEAKEKWKSELQNMKPNVASVQEL-EEKI 956
Cdd:TIGR00618 679 QLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDR--EFNEIENASSSLGSDLAAREDALNQSLKELMHQaRTVL 756
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 957 HSLQKELELKDEEVPVAVR-----AELAKARNEWNKEKQEEIHKIQEQNEEDYRQFLEDHRNKINEVLTAAKEdfvKQKT 1031
Cdd:TIGR00618 757 KARTEAHFNNNEEVTAALQtgaelSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQE---EEQF 833
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958766044 1032 ELLLQKETEFQACLDQSRKEW-----TLQEAQRTQLEVHRYEEDIltvldFLLRDTQLEYDGDSQGKQLLEVM 1099
Cdd:TIGR00618 834 LSRLEEKSATLGEITHQLLKYeecskQLAQLTQEQAKIIQLSDKL-----NGINQIKIQFDGDALIKFLHEIT 901
|
|
| LCD1 |
pfam09798 |
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. ... |
227-342 |
4.07e-04 |
|
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.
Pssm-ID: 462906 Cd Length: 615 Bit Score: 45.00 E-value: 4.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 227 QLQVLNKAKERQLDSLVEKLND----RERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKeremqleaQIHALETqi 302
Cdd:pfam09798 5 KLELLQQEKEKELEKLKNSYEElkssHEEELEKLKQEVQKLEDEKKFLLNELRSLSATSPASS--------QSHETDT-- 74
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1958766044 303 eafKVSEEKLTKKLRTTEITLESLKQQLVELHHSESLQRA 342
Cdd:pfam09798 75 ---DDSSSVSLKKRKIEESTAESLKQKYIRLQNNRIVDET 111
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
225-415 |
5.99e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 5.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 225 IIQLQVLNKAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEA 304
Cdd:TIGR02168 721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 305 FK---------------------VSEEKLTKKLRTTEITLESLKQQLVELHHS--------ESLQRAREQHESVVAGLTQ 355
Cdd:TIGR02168 801 LRealdelraeltllneeaanlrERLESLERRIAATERRLEDLEEQIEELSEDieslaaeiEELEELIEELESELEALLN 880
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958766044 356 KY---EEQVSCLQKNLDTTITALQEQEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLE 415
Cdd:TIGR02168 881 ERaslEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
601-1370 |
7.85e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 7.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 601 NREDILRLKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHDKQEAVDRCErtyQQHHEAMKAQIRESLLAK 680
Cdd:pfam02463 214 QLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLK---ENKEEEKEKKLQEEELKL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 681 HAAEKQHLSEVYEGTQSQLRSDLDKLN----------KEVAAVQECYLEVCREKDELEsTLRKTMEKAQEQTRQLLEDRE 750
Cdd:pfam02463 291 LAKEEEELKSELLKLERRKVDDEEKLKesekekkkaeKELKKEKEEIEELEKELKELE-IKREAEEEEEEELEKLQEKLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 751 EHVRKLKLELEERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEEEWQSKLNHSLPARRKATSDcgSQTDQAayP 830
Cdd:pfam02463 370 QLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEES--IELKQG--K 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 831 AAMPNAEALVLAEEQAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNARSrwilelpMLAEYKALLRAQQQ 910
Cdd:pfam02463 446 LTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESK-------ARSGLKVLLALIKD 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 911 EWAKQQEVAVAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHSLQKELELKDEEVPVAVRAELAKarnewnkeKQ 990
Cdd:pfam02463 519 GVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLK--------LP 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 991 EEIHKIQEQNEEDYRQFLEDHRNKINEVLTAAKEDFVKQKTELLLQKETEFQACLDQSRKEWTLQEAQRTQLEVHRYEED 1070
Cdd:pfam02463 591 LKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSE 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 1071 ILTVLDFLLRDTQLEYDGDSQGKQLLEVMSVCSSKWTSVQYFEKVKACIHKALQDTLSLLIDNIASEREKRNVVKTSADA 1150
Cdd:pfam02463 671 LTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEE 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 1151 VSWNTGQGDSGVPAPLPvstsgpcAQSSALLEAEAETDKKIFEMKDLCCGHCFQELEKEKQECQDLRRKLEKSRRHLQHL 1230
Cdd:pfam02463 751 EEEKSRLKKEEKEEEKS-------ELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLL 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 1231 ERTHKATVEKLGEENSRVVEELIEENHDMKNKLETLRALCRTppqslsagAAESARLLCSGQALEELRGQYIKAVKKIKR 1310
Cdd:pfam02463 824 IEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITK--------EELLQELLLKEEELEEQKLKDELESKEEKE 895
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958766044 1311 DMLRYIQESKERATEMVKAEVLRERQDTARKMHKYYLSCLQQI---LEDNGKEEGAEKKIMSA 1370
Cdd:pfam02463 896 KEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEellLEEADEKEKEENNKEEE 958
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
615-843 |
7.95e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 7.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 615 LQQQNQELKEAEEKLrSTNQDLCNQMRQMVQEFdhdkQEAVDRCERtyQQHHEAMKAQIRESLLAKHAAE-----KQHLS 689
Cdd:COG3096 450 EQQATEEVLELEQKL-SVADAARRQFEKAYELV----CKIAGEVER--SQAWQTARELLRRYRSQQALAQrlqqlRAQLA 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 690 EV--YEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLrktmEKAQEQTRQLLEDREEHVRKLKlELEERYQEt 767
Cdd:COG3096 523 ELeqRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQL----EELEEQAAEAVEQRSELRQQLE-QLRARIKE- 596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 768 LKAEKQSWLKAQAAGATQVEH-----ESRQKLI----QQLEEEWQSKLNHSLPARRKATSDcgSQTDQAAYPAAMPNAEA 838
Cdd:COG3096 597 LAARAPAWLAAQDALERLREQsgealADSQEVTaamqQLLEREREATVERDELAARKQALE--SQIERLSQPGGAEDPRL 674
|
....*
gi 1958766044 839 LVLAE 843
Cdd:COG3096 675 LALAE 679
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
285-1060 |
1.06e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 285 KEREMQLE---AQIHALETQIEAFKVSE---EKLTKKLrtteitleSLKQQLVELHHSESLQRAREQHESVVaglTQKYE 358
Cdd:TIGR00606 251 KNRLKEIEhnlSKIMKLDNEIKALKSRKkqmEKDNSEL--------ELKMEKVFQGTDEQLNDLYHNHQRTV---REKER 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 359 EQVSC---LQKNLDTTITALQEQEDVCTRLKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQCAHL-LQSGSVHEVT 434
Cdd:TIGR00606 320 ELVDCqreLEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSeRQIKNFHTLV 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 435 QLQLQLQQAQKAHILSESMNK--ALQEELTGLKEEISLYESAAELGvlpgdvegdlSVELTESCVGLGIKNVSWKQSKAN 512
Cdd:TIGR00606 400 IERQEDEAKTAAQLCADLQSKerLKQEQADEIRDEKKGLGRTIELK----------KEILEKKQEELKFVIKELQQLEGS 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 513 S--VAQQEPPNEKLSKDEVILKLKTQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTN 590
Cdd:TIGR00606 470 SdrILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDE 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 591 QL----WLDSPEAINREDILRLKNEVE-VLQQQNQELKEAEEKLRSTNQDLcnqmrqmvqefdhdkqeavdrcertyqQH 665
Cdd:TIGR00606 550 QIrkikSRHSDELTSLLGYFPNKKQLEdWLHSKSKEINQTRDRLAKLNKEL---------------------------AS 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 666 HEAMKAQIRESLLAKHAAEKQHLSEVYEGTQSQ-LRSDLDKLNKEV-------------AAVQECYLEVCREKDELESTL 731
Cdd:TIGR00606 603 LEQNKNHINNELESKEEQLSSYEDKLFDVCGSQdEESDLERLKEEIeksskqramlagaTAVYSQFITQLTDENQSCCPV 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 732 RKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEKQSWLKAQAAGATQVEHESRQKLIQQLEE----------- 800
Cdd:TIGR00606 683 CQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNklqkvnrdiqr 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 801 -----EWQSKLNHSLPARRKATSDCgsQTD----------------QAAYPAAMPNAEALVLAEEQAHQVQQEKELTVKE 859
Cdd:TIGR00606 763 lkndiEEQETLLGTIMPEEESAKVC--LTDvtimerfqmelkdverKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDT 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 860 ALRKSEvelELKYCESIAQKVETAVQNARSRWILELPMLAEykALLRAQQQEWAKQQEVAVAHRLSLALSEAKEK----- 934
Cdd:TIGR00606 841 VVSKIE---LNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT--NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQdsple 915
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 935 -WKSELQNMKPNVASVQELEEKIhsLQKELELKDEEVP------VAVRAELAKARNEWNKEKQEEIHKIQEQNEEDyrqf 1007
Cdd:TIGR00606 916 tFLEKDQQEKEELISSKETSNKK--AQDKVNDIKEKVKnihgymKDIENKIQDGKDDYLKQKETELNTVNAQLEEC---- 989
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|...
gi 1958766044 1008 lEDHRNKINEVLTAAKEDFVKQKtelllQKETEFQACLDQSRKEWTLQEAQRT 1060
Cdd:TIGR00606 990 -EKHQEKINEDMRLMRQDIDTQK-----IQERWLQDNLTLRKRENELKEVEEE 1036
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
615-801 |
1.17e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 615 LQQQNQELKEAEEKLRSTNQDLcNQMRQMVQEFDHDKQEAvdrcertyQQHHEAMKAQIRESLLAKHAAEKQHLSEVYEG 694
Cdd:COG4942 57 LAALERRIAALARRIRALEQEL-AALEAELAELEKEIAEL--------RAELEAQKEELAELLRALYRLGRQPPLALLLS 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 695 TQS--QLRSDLDKLNKEVAAVQECYLEVCREKDELEsTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERYQETLKAEK 772
Cdd:COG4942 128 PEDflDAVRRLQYLKYLAPARREQAEELRADLAELA-ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEK 206
|
170 180
....*....|....*....|....*....
gi 1958766044 773 QSWLKAQAAGATQVEHESRQKLIQQLEEE 801
Cdd:COG4942 207 ELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
510-630 |
2.28e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.54 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 510 KANSVAQQEPPNEKLSKDEVILKLKTQVQRLlssnsmkRHLVSELQRDLRDCRETMEALQQSKDSDRgmetktetseKTT 589
Cdd:COG2433 395 PEAEREKEHEERELTEEEEEIRRLEEQVERL-------EAEVEELEAELEEKDERIERLERELSEAR----------SEE 457
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1958766044 590 NQLWLDSPEAINRE-DILRLKNEVEVLQQQNQELKEAEEKLR 630
Cdd:COG2433 458 RREIRKDREISRLDrEIERLERELEEERERIEELKRKLERLK 499
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1179-1376 |
2.93e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 1179 ALLEAEAETDKKIFEMKDlccghcfqELEKEKQEC-QDLRRKleksRRHLQHLERT---HKATVEKLGEENSRVVEELIE 1254
Cdd:PRK12704 47 AKKEAEAIKKEALLEAKE--------EIHKLRNEFeKELRER----RNELQKLEKRllqKEENLDRKLELLEKREEELEK 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 1255 ENHDMKNKLETLralcrtppqslsagaaesarllcsgqalEELRGQYIKAVKKIKRDMLRYIQESKERATEMVKAEVLRE 1334
Cdd:PRK12704 115 KEKELEQKQQEL----------------------------EKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEE 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958766044 1335 -RQDTARKMHKYylsclqqilEDNGKEEG---AEKKIMSAASKLAT 1376
Cdd:PRK12704 167 aRHEAAVLIKEI---------EEEAKEEAdkkAKEILAQAIQRCAA 203
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
674-1019 |
2.98e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 674 RESLLAKHAAEKQHLSEVYEgTQSQLRSDLDKLNKEVAAVQECyLEVCREKDELEStLRKTMEKAQEQTRQLLEDREEhV 753
Cdd:COG4913 612 LAALEAELAELEEELAEAEE-RLEALEAELDALQERREALQRL-AEYSWDEIDVAS-AEREIAELEAELERLDASSDD-L 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 754 RKLKLELEEryqetLKAEKQswlkaqaagATQVEHESRQKLIQQLEEEWQSklnhslparrkatsdcgsqtdqaaypaam 833
Cdd:COG4913 688 AALEEQLEE-----LEAELE---------ELEEELDELKGEIGRLEKELEQ----------------------------- 724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 834 pnaealvlAEEQAHQVQQEKELTVKEALRKSEVELELKYCESIAQKVETAVQNArsrwilelpmlaeykalLRAQQQEWA 913
Cdd:COG4913 725 --------AEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN-----------------LEERIDALR 779
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 914 KQQEVAvAHRLSLALSEAKEKWKSELQNMKPNVASVQELEEKIHslqkelELKDEEVPvAVRAELAKARNEWNKEKQEEI 993
Cdd:COG4913 780 ARLNRA-EEELERAMRAFNREWPAETADLDADLESLPEYLALLD------RLEEDGLP-EYEERFKELLNENSIEFVADL 851
|
330 340
....*....|....*....|....*..
gi 1958766044 994 -HKIQEQNEEDYRQFledhrNKINEVL 1019
Cdd:COG4913 852 lSKLRRAIREIKERI-----DPLNDSL 873
|
|
| PspA |
COG1842 |
Phage shock protein A [Transcription, Signal transduction mechanisms]; |
236-345 |
3.62e-03 |
|
Phage shock protein A [Transcription, Signal transduction mechanisms];
Pssm-ID: 441447 [Multi-domain] Cd Length: 217 Bit Score: 40.96 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 236 ERQLDSLVEKLNDRERQIRylnhqlLIVQDEKDGLALSLresqklfqsgKEREMQLEAQIHALETQIEAFKVSEEKLTKK 315
Cdd:COG1842 57 ERQLEELEAEAEKWEEKAR------LALEKGREDLAREA----------LERKAELEAQAEALEAQLAQLEEQVEKLKEA 120
|
90 100 110
....*....|....*....|....*....|
gi 1958766044 316 LRTTEITLESLKQQLVELHHSESLQRAREQ 345
Cdd:COG1842 121 LRQLESKLEELKAKKDTLKARAKAAKAQEK 150
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
226-805 |
4.39e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 4.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 226 IQLQVLNKAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLAlslrESQKLFQSGKEREMQLEAQIHALETQIEAF 305
Cdd:TIGR00618 316 LQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAH----EVATSIREISCQQHTLTQHIHTLQQQKTTL 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 306 KVSEEKLTKKLrtteITLESLKQQLVELHHSESLQRAREQHESVVAGLTQKYEEQVSC-LQKNLDTTITALQEQEDVCTR 384
Cdd:TIGR00618 392 TQKLQSLCKEL----DILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAaITCTAQCEKLEKIHLQESAQS 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 385 LKDHVQQLERNQEAVRLEKTELINRLTRSLEDSQKQC----------AHLLQSGSVHEVTQLQLQLQQAQKAHILSEsmn 454
Cdd:TIGR00618 468 LKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCplcgscihpnPARQDIDNPGPLTRRMQRGEQTYAQLETSE--- 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 455 KALQEELTGLKEEISLYESAAElgvlpgdvegdlsvELTESCVGLGIKNVSWKQSKansvaqqeppneklskdEVILKLK 534
Cdd:TIGR00618 545 EDVYHQLTSERKQRASLKEQMQ--------------EIQQSFSILTQCDNRSKEDI-----------------PNLQNIT 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 535 TQVQRLLSSNSMKRHLVSELQRDLRDCRETMEALQQSKDSDRGMETKTETSEKTTNQLWLDSPEAINREDILRLKNEVEV 614
Cdd:TIGR00618 594 VRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKE 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 615 LQQQNQ-ELKEAEEKLRSTNQDLcnQMRQMVQEFDHDKQEAVDRCERTYQQHHEAMKAQIREsLLAKHAAEKQHLSEVYE 693
Cdd:TIGR00618 674 LLASRQlALQKMQSEKEQLTYWK--EMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSD-LAAREDALNQSLKELMH 750
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 694 GTQSQLR-SDLDKLNKEVAAVQECYLEvcREKDELESTLRKTMEKAQEQTRQLLEDREEHVRKLKLELEERY--QETLKA 770
Cdd:TIGR00618 751 QARTVLKaRTEAHFNNNEEVTAALQTG--AELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNlqCETLVQ 828
|
570 580 590
....*....|....*....|....*....|....*
gi 1958766044 771 EKQSwLKAQAAGATQVEHESRQKLiQQLEEEWQSK 805
Cdd:TIGR00618 829 EEEQ-FLSRLEEKSATLGEITHQL-LKYEECSKQL 861
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
229-800 |
4.60e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 4.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 229 QVLNKAK---ERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQKLFQSGKEREMQLEAQIHALETQIEAF 305
Cdd:pfam01576 204 QELEKAKrklEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESE 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 306 KVSEEKLTKKLRTTEITLESLKQQLVE-LHHSESLQRAREQHESVVAGL-------TQKYEEQVSCLQKNLDTTITALQE 377
Cdd:pfam01576 284 RAARNKAEKQRRDLGEELEALKTELEDtLDTTAAQQELRSKREQEVTELkkaleeeTRSHEAQLQEMRQKHTQALEELTE 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 378 QEDVCTRLKdhvQQLERNQEAVRLEKTELINRLtRSLEDSQKQCAHLL--QSGSVHEVTQLQLQLQQAQKAhiLSESMNK 455
Cdd:pfam01576 364 QLEQAKRNK---ANLEKAKQALESENAELQAEL-RTLQQAKQDSEHKRkkLEGQLQELQARLSESERQRAE--LAEKLSK 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 456 aLQEELTGL--------KEEISLYESAAELGVLPGDVEgDLSVELTESCVGLGIKNVSWKQSKANSVAQQEPPNEKlskd 527
Cdd:pfam01576 438 -LQSELESVssllneaeGKNIKLSKDVSSLESQLQDTQ-ELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEA---- 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 528 evilklKTQVQRLLSSNSMKrhlVSELQRDLRDCRETMEALQQSKDsdrgmetktetsekttnqlwldspeainredilR 607
Cdd:pfam01576 512 ------KRNVERQLSTLQAQ---LSDMKKKLEEDAGTLEALEEGKK---------------------------------R 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 608 LKNEVEVLQQQNQELKEAEEKLRSTNQDLCNQMRQMVQEFDHD---------KQEAVDRC---ERT----YQQHHEAMKA 671
Cdd:pfam01576 550 LQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQrqlvsnlekKQKKFDQMlaeEKAisarYAEERDRAEA 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 672 QIRES-----LLAKHAAEKQHLSEVYEGTQSQLRSDLDKLNKEVAAVQECYLEVCREKDELESTLRKTMEKAQEqtrqlL 746
Cdd:pfam01576 630 EAREKetralSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEE-----L 704
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 1958766044 747 EDREEHVRKLKLELEERYQeTLKAEKQSWLKAQaagaTQVEHESRQKLIQQLEE 800
Cdd:pfam01576 705 EDELQATEDAKLRLEVNMQ-ALKAQFERDLQAR----DEQGEEKRRQLVKQVRE 753
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
227-469 |
6.19e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 6.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 227 QLQVLNKAKER----QLDSLVEKLNDRERQIRyLNHQLLIVQDEKDGLALSlrESQKLFQSGKEREMQLEAQIHALETQI 302
Cdd:PHA02562 167 EMDKLNKDKIRelnqQIQTLDMKIDHIQQQIK-TYNKNIEEQRKKNGENIA--RKQNKYDELVEEAKTIKAEIEELTDEL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 303 EAFKVSEEKLT---KKLRTTEITLESLKQQLVELHHseslqrareqhesvvagLTQKYEEQVSCLQkNLDTT---ITALQ 376
Cdd:PHA02562 244 LNLVMDIEDPSaalNKLNTAAAKIKSKIEQFQKVIK-----------------MYEKGGVCPTCTQ-QISEGpdrITKIK 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 377 EQEDVCT----RLKDHVQQLErnqeavrlEKTELINRLTRSLEDSQKQCAHLLQ--SGSVHEVTQLQLQLQQAQKAHILS 450
Cdd:PHA02562 306 DKLKELQhsleKLDTAIDELE--------EIMDEFNEQSKKLLELKNKISTNKQslITLVDKAKKVKAAIEELQAEFVDN 377
|
250
....*....|....*....
gi 1958766044 451 ESMNKALQEELTGLKEEIS 469
Cdd:PHA02562 378 AEELAKLQDELDKIVKTKS 396
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
233-400 |
7.24e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 7.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 233 KAKERQLDSLVEKLNDRERQIRYLNHQLLIVQDEKDGLALSLRESQK--------LFQSGKE-----------------R 287
Cdd:COG4942 58 AALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEelaellraLYRLGRQpplalllspedfldavrR 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958766044 288 EMQLEAQIHALETQIEAFKVSEEKLTKKLRTTEITLESLKQQLVEL-HHSESLQRAREQHESVVAGLTQKYEEQvsclqk 366
Cdd:COG4942 138 LQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELeEERAALEALKAERQKLLARLEKELAEL------ 211
|
170 180 190
....*....|....*....|....*....|....
gi 1958766044 367 nlDTTITALQEQEDvctRLKDHVQQLERNQEAVR 400
Cdd:COG4942 212 --AAELAELQQEAE---ELEALIARLEAEAAAAA 240
|
|
| |
