NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|672058521|ref|XP_008763537|]
View 

large ribosomal subunit protein mL42 isoform X1 [Rattus norvegicus]

Protein Classification

MRP-S32 domain-containing protein( domain architecture ID 10562912)

MRP-S32 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
MRP-S32 pfam10210
Mitochondrial 28S ribosomal protein S32; This entry is of a family of short, approximately 100 ...
 46-141 2.44e-48

Mitochondrial 28S ribosomal protein S32; This entry is of a family of short, approximately 100 amino acid residues, proteins which are mitochondrial 28S ribosomal proteins named as MRP-S32. Their exact function could not be confirmed.


:

Pssm-ID: 462999  Cd Length: 91  Bit Score: 150.51  E-value: 2.44e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672058521   46 VELALTSDGRTIVCYHPSVDVPYEHTQPIPhpdllHNNEETHEQILR---TKLEGNRKHLEQGPMIEQLSKVFFTTKHRW 122
Cdd:pfam10210   1 VELAVTSDGRTIVCWHPSKDFPYEHTKPLP-----ENEEETHESVLKetlKELKEVFKHKKPEPVREELSKLTYTTKHRW 75

                          90
                  ....*....|....*....
gi 672058521  123 YPhgQYHRRRKKLNpPKDR 141
Cdd:pfam10210  76 YP--RARDRRAKKT-PKDR 91
 
Name Accession Description Interval E-value
MRP-S32 pfam10210
Mitochondrial 28S ribosomal protein S32; This entry is of a family of short, approximately 100 ...
 46-141 2.44e-48

Mitochondrial 28S ribosomal protein S32; This entry is of a family of short, approximately 100 amino acid residues, proteins which are mitochondrial 28S ribosomal proteins named as MRP-S32. Their exact function could not be confirmed.


Pssm-ID: 462999  Cd Length: 91  Bit Score: 150.51  E-value: 2.44e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672058521   46 VELALTSDGRTIVCYHPSVDVPYEHTQPIPhpdllHNNEETHEQILR---TKLEGNRKHLEQGPMIEQLSKVFFTTKHRW 122
Cdd:pfam10210   1 VELAVTSDGRTIVCWHPSKDFPYEHTKPLP-----ENEEETHESVLKetlKELKEVFKHKKPEPVREELSKLTYTTKHRW 75

                          90
                  ....*....|....*....
gi 672058521  123 YPhgQYHRRRKKLNpPKDR 141
Cdd:pfam10210  76 YP--RARDRRAKKT-PKDR 91
 
Name Accession Description Interval E-value
MRP-S32 pfam10210
Mitochondrial 28S ribosomal protein S32; This entry is of a family of short, approximately 100 ...
 46-141 2.44e-48

Mitochondrial 28S ribosomal protein S32; This entry is of a family of short, approximately 100 amino acid residues, proteins which are mitochondrial 28S ribosomal proteins named as MRP-S32. Their exact function could not be confirmed.


Pssm-ID: 462999  Cd Length: 91  Bit Score: 150.51  E-value: 2.44e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672058521   46 VELALTSDGRTIVCYHPSVDVPYEHTQPIPhpdllHNNEETHEQILR---TKLEGNRKHLEQGPMIEQLSKVFFTTKHRW 122
Cdd:pfam10210   1 VELAVTSDGRTIVCWHPSKDFPYEHTKPLP-----ENEEETHESVLKetlKELKEVFKHKKPEPVREELSKLTYTTKHRW 75

                          90
                  ....*....|....*....
gi 672058521  123 YPhgQYHRRRKKLNpPKDR 141
Cdd:pfam10210  76 YP--RARDRRAKKT-PKDR 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH