|
Name |
Accession |
Description |
Interval |
E-value |
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
1521-1768 |
3.08e-75 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
:
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 250.65 E-value: 3.08e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1521 SPPFEYFIMAMIALNTVVLMMKFYDAPYE-YELMLKCLNIVFTSMFSMECVLKIIAFGV-LNYFRDAWNVFDFVTVLGSI 1598
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQPEEpLTTVLEILDYVFTGIFTLEMLLKIIAAGFkKRYFRSPWNILDFVVVLPSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1599 TDILVTEIaNNFINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALDDD 1678
Cdd:pfam00520 81 ISLVLSSV-GSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKTWE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1679 TSINRHNNFRTFLQALMLLFRSATGEAWHEIMLSCLsnracdpnanaSECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMD 1758
Cdd:pfam00520 160 NPDNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTI-----------DGKGEFWAYIYFVSFIILGGFLLLNLFIAVIID 228
|
250
....*....|
gi 861446019 1759 NFEYLTRDSS 1768
Cdd:pfam00520 229 NFQELTERTE 238
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
94-367 |
3.37e-67 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
:
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 227.54 E-value: 3.37e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 94 WPPFEYMILATIIANCIVLALEQHLPDgdKTPMSERLDDTEPYFIGIFCFEAGIKIIALGFVFHkgsYLRNGWNVMDFVV 173
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQP--EEPLTTVLEILDYVFTGIFTLEMLLKIIAAGFKKR---YFRSPWNILDFVV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 174 VLTGIL----ATAGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLEFYMGKF 249
Cdd:pfam00520 76 VLPSLIslvlSSVGSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 250 HKacfpnstdadpvgdfpcgkdaparlcegdtecreyWPGPNFGITNFDNILFAILTVFQCITMEGWTDILYNTNDAAGN 329
Cdd:pfam00520 156 KT-----------------------------------WENPDNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKGE 200
|
250 260 270
....*....|....*....|....*....|....*...
gi 861446019 330 TWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVE 367
Cdd:pfam00520 201 FWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELTERTE 238
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
1197-1431 |
3.16e-55 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
:
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 193.25 E-value: 3.16e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1197 RYFETVILVVIALSSIALAAEDPVRTDSSRNNALKYMDYIFTGVFTFEMVIKMIDLGLLLHpgaYFRDLWNILDFIVVSG 1276
Cdd:pfam00520 2 RYFELFILLLILLNTIFLALETYFQPEEPLTTVLEILDYVFTGIFTLEMLLKIIAAGFKKR---YFRSPWNILDFVVVLP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1277 ALVAFAFSSFMGGSkgkdinTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFK 1356
Cdd:pfam00520 79 SLISLVLSSVGSLS------GLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFG 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 861446019 1357 GKFfyctdeskelerdcrgqyldyeKEEVEAQPRqwkkyDFHYDNVLWALLTLFTVSTGEGWPMVLKHSVDATYE 1431
Cdd:pfam00520 153 GKL----------------------KTWENPDNG-----RTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKGE 200
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
482-766 |
2.36e-49 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
:
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 176.30 E-value: 2.36e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 482 AQSFYWVVLCVVALNTLCVAMVHYNQPQ-RLTTALYFAEFVFLGLFLTEMSLKMYGLGP-RSYFRSSFNCFDFGVIVGSI 559
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQPEePLTTVLEILDYVFTGIFTLEMLLKIIAAGFkKRYFRSPWNILDFVVVLPSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 560 FEVVWAAIKPGtsFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFK 639
Cdd:pfam00520 81 ISLVLSSVGSL--SGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKTW 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 640 DE--TPTTNFDTFPAAILTVFQTgpdqaigpsdvhdcpfsrllphgplagspasihlvtgtqsqlsqiLTGEDWNAVMYH 717
Cdd:pfam00520 159 ENpdNGRTNFDNFPNAFLWLFQT---------------------------------------------MTTEGWGDIMYD 193
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 861446019 718 GIESQGgvskGMFSSFYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTK 766
Cdd:pfam00520 194 TIDGKG----EFWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELTERTE 238
|
|
| Ca_chan_IQ |
pfam08763 |
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular ... |
1841-1918 |
1.10e-41 |
|
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular calcium entry in response to changes in membrane potential. The isoleucine-glutamine (IQ) motif in the voltage gated calcium channel IQ domain interacts with hydrophobic pockets of Ca2+/calmodulin. The interaction regulates two self-regulatory calcium dependent feedback mechanism, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF).
:
Pssm-ID: 462591 Cd Length: 77 Bit Score: 147.74 E-value: 1.10e-41
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 861446019 1841 TSTLMALIRTALEIKLAPAGtKQHQCDAELRKEISSVWANLPQKTLDLLVPPHKPDEMTVGKVYAALMIFDFYKQNKT 1918
Cdd:pfam08763 1 TATLFALIRTSLKIKLAPAG-EMDQADAELRKIIKKIWPRLSQKTLDLLVPPPSDDEMTVGKIYAALLIQDYYRQNKA 77
|
|
| GPHH |
pfam16905 |
Voltage-dependent L-type calcium channel, IQ-associated; GPHH is a sequence motif found in ... |
1777-1830 |
1.38e-31 |
|
Voltage-dependent L-type calcium channel, IQ-associated; GPHH is a sequence motif found in this short domain on voltage-dependent L-type calcium channel proteins in eukaryotes. The domain is closely associated with the IQ-domain, pfam08763.
:
Pssm-ID: 465306 Cd Length: 54 Bit Score: 118.14 E-value: 1.38e-31
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 861446019 1777 EFIRVWAEYDPAACGRISYNDMFEMLKHMSPPLGLGKKCPARVAYKRLVRMNMP 1830
Cdd:pfam16905 1 EFVRVWAEYDPAATGRISYQDMYELLRRISPPLGFGKKCPARVAYKRLVRMNMP 54
|
|
| PHA03247 super family |
cl33720 |
large tegument protein UL36; Provisional |
2033-2357 |
7.33e-07 |
|
large tegument protein UL36; Provisional
The actual alignment was detected with superfamily member PHA03247:
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 54.94 E-value: 7.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2033 DPDGEPQPGLQSQGRAASMPRLAAETQPAPdaSPMKRSISTLAQRPHG-AHLCSAALDRLAPGQVPHHHHHRCHRRRDKK 2111
Cdd:PHA03247 2546 DDAGDPPPPLPPAAPPAAPDRSVPPPRPAP--RPSEPAVTSRARRPDApPQSARPRAPVDDRGDPRGPAPPSPLPPDTHA 2623
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2112 QKSLEKGPSLSADTDGAPSSTPGPGLA-PGEGPAGCRHERRQgRGRSQERRQPSSSSSEKQRfyscdrfgGREPPQPKPS 2190
Cdd:PHA03247 2624 PDPPPPSPSPAANEPDPHPPPTVPPPErPRDDPAPGRVSRPR-RARRLGRAAQASSPPQRPR--------RRAARPTVGS 2694
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2191 VSSHPTSPTAGLEPAPAPQGGGSVTGSPLLSTS-------------------GASTPGRGGRRQLPQTPLTPRPSitykT 2251
Cdd:PHA03247 2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGPAAarqaspalpaapappavpaGPATPGGPARPARPPTTAGPPAP----A 2770
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2252 ANSSPVhfGGAQSSLSAfsPGRLSRGLSEHNALLQRDPLSQPLAPSSRIGSDPylgqrlDSEASAHALPEDTLTFEEAMA 2331
Cdd:PHA03247 2771 PPAAPA--AGPPRRLTR--PAVASLSESRESLPSPWDPADPPAAVLAPAAALP------PAASPAGPLPPPTSAQPTAPP 2840
|
330 340
....*....|....*....|....*.
gi 861446019 2332 SNSGRSSRTSYVSSLTSQSHPLRRVP 2357
Cdd:PHA03247 2841 PPPGPPPPSLPLGGSVAPGGDVRRRP 2866
|
|
| PHA03169 super family |
cl27451 |
hypothetical protein; Provisional |
923-1170 |
2.63e-04 |
|
hypothetical protein; Provisional
The actual alignment was detected with superfamily member PHA03169:
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 46.12 E-value: 2.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 923 KAPTTLPSASEQAQDQAGAQRADRMDGAEpgaRGEHARPRH-SRSKEATGGQEARGERSRGpeggrrhhrmhrhGPDPSK 1001
Cdd:PHA03169 44 AKPAPPAPTTSGPQVRAVAEQGHRQTESD---TETAEESRHgEKEERGQGGPSGSGSESVG-------------SPTPSP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1002 DKDKDGPVAKGERRARHRGPRAGPKEAESGEEPGrRHRARHKAPPTQEAMEKEGEGPEGDQEVRSRQLKDPPcdleargv 1081
Cdd:PHA03169 108 SGSAEELASGLSPENTSGSSPESPASHSPPPSPP-SHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEP-------- 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1082 mgvDPVHALPstclQKVEEQPEDADNQRNVTRMGSQPSDPStavhapvtltDPAGETtavPSGNVDLESQAEGKKEVEAD 1161
Cdd:PHA03169 179 ---EPPTSEP----EPDSPGPPQSETPTSSPPPQSPPDEPG----------EPQSPT---PQQAPSPNTQQAVEHEDEPT 238
|
....*....
gi 861446019 1162 DMLRSGPRP 1170
Cdd:PHA03169 239 EPEREGPPF 247
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
1521-1768 |
3.08e-75 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 250.65 E-value: 3.08e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1521 SPPFEYFIMAMIALNTVVLMMKFYDAPYE-YELMLKCLNIVFTSMFSMECVLKIIAFGV-LNYFRDAWNVFDFVTVLGSI 1598
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQPEEpLTTVLEILDYVFTGIFTLEMLLKIIAAGFkKRYFRSPWNILDFVVVLPSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1599 TDILVTEIaNNFINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALDDD 1678
Cdd:pfam00520 81 ISLVLSSV-GSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKTWE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1679 TSINRHNNFRTFLQALMLLFRSATGEAWHEIMLSCLsnracdpnanaSECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMD 1758
Cdd:pfam00520 160 NPDNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTI-----------DGKGEFWAYIYFVSFIILGGFLLLNLFIAVIID 228
|
250
....*....|
gi 861446019 1759 NFEYLTRDSS 1768
Cdd:pfam00520 229 NFQELTERTE 238
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
94-367 |
3.37e-67 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 227.54 E-value: 3.37e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 94 WPPFEYMILATIIANCIVLALEQHLPDgdKTPMSERLDDTEPYFIGIFCFEAGIKIIALGFVFHkgsYLRNGWNVMDFVV 173
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQP--EEPLTTVLEILDYVFTGIFTLEMLLKIIAAGFKKR---YFRSPWNILDFVV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 174 VLTGIL----ATAGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLEFYMGKF 249
Cdd:pfam00520 76 VLPSLIslvlSSVGSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 250 HKacfpnstdadpvgdfpcgkdaparlcegdtecreyWPGPNFGITNFDNILFAILTVFQCITMEGWTDILYNTNDAAGN 329
Cdd:pfam00520 156 KT-----------------------------------WENPDNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKGE 200
|
250 260 270
....*....|....*....|....*....|....*...
gi 861446019 330 TWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVE 367
Cdd:pfam00520 201 FWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELTERTE 238
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
1197-1431 |
3.16e-55 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 193.25 E-value: 3.16e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1197 RYFETVILVVIALSSIALAAEDPVRTDSSRNNALKYMDYIFTGVFTFEMVIKMIDLGLLLHpgaYFRDLWNILDFIVVSG 1276
Cdd:pfam00520 2 RYFELFILLLILLNTIFLALETYFQPEEPLTTVLEILDYVFTGIFTLEMLLKIIAAGFKKR---YFRSPWNILDFVVVLP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1277 ALVAFAFSSFMGGSkgkdinTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFK 1356
Cdd:pfam00520 79 SLISLVLSSVGSLS------GLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFG 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 861446019 1357 GKFfyctdeskelerdcrgqyldyeKEEVEAQPRqwkkyDFHYDNVLWALLTLFTVSTGEGWPMVLKHSVDATYE 1431
Cdd:pfam00520 153 GKL----------------------KTWENPDNG-----RTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKGE 200
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
482-766 |
2.36e-49 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 176.30 E-value: 2.36e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 482 AQSFYWVVLCVVALNTLCVAMVHYNQPQ-RLTTALYFAEFVFLGLFLTEMSLKMYGLGP-RSYFRSSFNCFDFGVIVGSI 559
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQPEePLTTVLEILDYVFTGIFTLEMLLKIIAAGFkKRYFRSPWNILDFVVVLPSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 560 FEVVWAAIKPGtsFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFK 639
Cdd:pfam00520 81 ISLVLSSVGSL--SGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKTW 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 640 DE--TPTTNFDTFPAAILTVFQTgpdqaigpsdvhdcpfsrllphgplagspasihlvtgtqsqlsqiLTGEDWNAVMYH 717
Cdd:pfam00520 159 ENpdNGRTNFDNFPNAFLWLFQT---------------------------------------------MTTEGWGDIMYD 193
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 861446019 718 GIESQGgvskGMFSSFYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTK 766
Cdd:pfam00520 194 TIDGKG----EFWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELTERTE 238
|
|
| Ca_chan_IQ |
pfam08763 |
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular ... |
1841-1918 |
1.10e-41 |
|
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular calcium entry in response to changes in membrane potential. The isoleucine-glutamine (IQ) motif in the voltage gated calcium channel IQ domain interacts with hydrophobic pockets of Ca2+/calmodulin. The interaction regulates two self-regulatory calcium dependent feedback mechanism, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF).
Pssm-ID: 462591 Cd Length: 77 Bit Score: 147.74 E-value: 1.10e-41
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 861446019 1841 TSTLMALIRTALEIKLAPAGtKQHQCDAELRKEISSVWANLPQKTLDLLVPPHKPDEMTVGKVYAALMIFDFYKQNKT 1918
Cdd:pfam08763 1 TATLFALIRTSLKIKLAPAG-EMDQADAELRKIIKKIWPRLSQKTLDLLVPPPSDDEMTVGKIYAALLIQDYYRQNKA 77
|
|
| GPHH |
pfam16905 |
Voltage-dependent L-type calcium channel, IQ-associated; GPHH is a sequence motif found in ... |
1777-1830 |
1.38e-31 |
|
Voltage-dependent L-type calcium channel, IQ-associated; GPHH is a sequence motif found in this short domain on voltage-dependent L-type calcium channel proteins in eukaryotes. The domain is closely associated with the IQ-domain, pfam08763.
Pssm-ID: 465306 Cd Length: 54 Bit Score: 118.14 E-value: 1.38e-31
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 861446019 1777 EFIRVWAEYDPAACGRISYNDMFEMLKHMSPPLGLGKKCPARVAYKRLVRMNMP 1830
Cdd:pfam16905 1 EFVRVWAEYDPAATGRISYQDMYELLRRISPPLGFGKKCPARVAYKRLVRMNMP 54
|
|
| Ca_chan_IQ |
smart01062 |
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular ... |
1896-1926 |
2.67e-10 |
|
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular calcium entry in response to changes in membrane potential. The isoleucine-glutamine (IQ) motif in the voltage gated calcium channel IQ domain interacts with hydrophobic pockets of Ca2+/calmodulin. The interaction regulates two self-regulatory calcium dependent feedback mechanism, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF).
Pssm-ID: 198130 Cd Length: 31 Bit Score: 57.23 E-value: 2.67e-10
10 20 30
....*....|....*....|....*....|.
gi 861446019 1896 DEMTVGKVYAALMIFDFYKQNKTTRDQIHQA 1926
Cdd:smart01062 1 DELTVGKIYAAMLIQDYFRQFKSRKEQELLG 31
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
2033-2357 |
7.33e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 54.94 E-value: 7.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2033 DPDGEPQPGLQSQGRAASMPRLAAETQPAPdaSPMKRSISTLAQRPHG-AHLCSAALDRLAPGQVPHHHHHRCHRRRDKK 2111
Cdd:PHA03247 2546 DDAGDPPPPLPPAAPPAAPDRSVPPPRPAP--RPSEPAVTSRARRPDApPQSARPRAPVDDRGDPRGPAPPSPLPPDTHA 2623
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2112 QKSLEKGPSLSADTDGAPSSTPGPGLA-PGEGPAGCRHERRQgRGRSQERRQPSSSSSEKQRfyscdrfgGREPPQPKPS 2190
Cdd:PHA03247 2624 PDPPPPSPSPAANEPDPHPPPTVPPPErPRDDPAPGRVSRPR-RARRLGRAAQASSPPQRPR--------RRAARPTVGS 2694
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2191 VSSHPTSPTAGLEPAPAPQGGGSVTGSPLLSTS-------------------GASTPGRGGRRQLPQTPLTPRPSitykT 2251
Cdd:PHA03247 2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGPAAarqaspalpaapappavpaGPATPGGPARPARPPTTAGPPAP----A 2770
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2252 ANSSPVhfGGAQSSLSAfsPGRLSRGLSEHNALLQRDPLSQPLAPSSRIGSDPylgqrlDSEASAHALPEDTLTFEEAMA 2331
Cdd:PHA03247 2771 PPAAPA--AGPPRRLTR--PAVASLSESRESLPSPWDPADPPAAVLAPAAALP------PAASPAGPLPPPTSAQPTAPP 2840
|
330 340
....*....|....*....|....*.
gi 861446019 2332 SNSGRSSRTSYVSSLTSQSHPLRRVP 2357
Cdd:PHA03247 2841 PPPGPPPPSLPLGGSVAPGGDVRRRP 2866
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
923-1170 |
2.63e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 46.12 E-value: 2.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 923 KAPTTLPSASEQAQDQAGAQRADRMDGAEpgaRGEHARPRH-SRSKEATGGQEARGERSRGpeggrrhhrmhrhGPDPSK 1001
Cdd:PHA03169 44 AKPAPPAPTTSGPQVRAVAEQGHRQTESD---TETAEESRHgEKEERGQGGPSGSGSESVG-------------SPTPSP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1002 DKDKDGPVAKGERRARHRGPRAGPKEAESGEEPGrRHRARHKAPPTQEAMEKEGEGPEGDQEVRSRQLKDPPcdleargv 1081
Cdd:PHA03169 108 SGSAEELASGLSPENTSGSSPESPASHSPPPSPP-SHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEP-------- 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1082 mgvDPVHALPstclQKVEEQPEDADNQRNVTRMGSQPSDPStavhapvtltDPAGETtavPSGNVDLESQAEGKKEVEAD 1161
Cdd:PHA03169 179 ---EPPTSEP----EPDSPGPPQSETPTSSPPPQSPPDEPG----------EPQSPT---PQQAPSPNTQQAVEHEDEPT 238
|
....*....
gi 861446019 1162 DMLRSGPRP 1170
Cdd:PHA03169 239 EPEREGPPF 247
|
|
| AF-4 |
pfam05110 |
AF-4 proto-oncoprotein N-terminal region; This family consists of AF4 (Proto-oncogene AF4) and ... |
2033-2198 |
3.62e-03 |
|
AF-4 proto-oncoprotein N-terminal region; This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homolog Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila.
Pssm-ID: 461550 [Multi-domain] Cd Length: 514 Bit Score: 42.42 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2033 DPDGEPQPGLQSQGRAASMPRLAAETQPAPDASPMKRSISTLaQRPHGAH--------LCSAALDRLAPGQvphhhhHRC 2104
Cdd:pfam05110 95 DKTSGLPPSFHTSSHSQPMGPPSSSSPSVSSSQSQKKSQART-EPAHGGHsssgsqssQRSQGQSRSKGGQ------ESH 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2105 HRRRDKKQKSLEKGPSLSADTDGAPSSTPG-PGLAPGEGPAGCRHERRQGrgrsQERRQPSSSSSEKQRFYS---CDR-F 2179
Cdd:pfam05110 168 SSSHHKRQERREDLFSCASLSHSLEELSPLlSSLSSPVKPLSPSHSRQHT----GSKAQNSSDHHGKEYSHSkspRDSeA 243
|
170
....*....|....*....
gi 861446019 2180 GGREPPQPKPSVSSHPTSP 2198
Cdd:pfam05110 244 GSHGPESPSTSLLASSSQL 262
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
1521-1768 |
3.08e-75 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 250.65 E-value: 3.08e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1521 SPPFEYFIMAMIALNTVVLMMKFYDAPYE-YELMLKCLNIVFTSMFSMECVLKIIAFGV-LNYFRDAWNVFDFVTVLGSI 1598
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQPEEpLTTVLEILDYVFTGIFTLEMLLKIIAAGFkKRYFRSPWNILDFVVVLPSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1599 TDILVTEIaNNFINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALDDD 1678
Cdd:pfam00520 81 ISLVLSSV-GSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKTWE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1679 TSINRHNNFRTFLQALMLLFRSATGEAWHEIMLSCLsnracdpnanaSECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMD 1758
Cdd:pfam00520 160 NPDNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTI-----------DGKGEFWAYIYFVSFIILGGFLLLNLFIAVIID 228
|
250
....*....|
gi 861446019 1759 NFEYLTRDSS 1768
Cdd:pfam00520 229 NFQELTERTE 238
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
94-367 |
3.37e-67 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 227.54 E-value: 3.37e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 94 WPPFEYMILATIIANCIVLALEQHLPDgdKTPMSERLDDTEPYFIGIFCFEAGIKIIALGFVFHkgsYLRNGWNVMDFVV 173
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQP--EEPLTTVLEILDYVFTGIFTLEMLLKIIAAGFKKR---YFRSPWNILDFVV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 174 VLTGIL----ATAGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLEFYMGKF 249
Cdd:pfam00520 76 VLPSLIslvlSSVGSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 250 HKacfpnstdadpvgdfpcgkdaparlcegdtecreyWPGPNFGITNFDNILFAILTVFQCITMEGWTDILYNTNDAAGN 329
Cdd:pfam00520 156 KT-----------------------------------WENPDNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKGE 200
|
250 260 270
....*....|....*....|....*....|....*...
gi 861446019 330 TWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVE 367
Cdd:pfam00520 201 FWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELTERTE 238
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
1197-1431 |
3.16e-55 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 193.25 E-value: 3.16e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1197 RYFETVILVVIALSSIALAAEDPVRTDSSRNNALKYMDYIFTGVFTFEMVIKMIDLGLLLHpgaYFRDLWNILDFIVVSG 1276
Cdd:pfam00520 2 RYFELFILLLILLNTIFLALETYFQPEEPLTTVLEILDYVFTGIFTLEMLLKIIAAGFKKR---YFRSPWNILDFVVVLP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1277 ALVAFAFSSFMGGSkgkdinTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFK 1356
Cdd:pfam00520 79 SLISLVLSSVGSLS------GLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFG 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 861446019 1357 GKFfyctdeskelerdcrgqyldyeKEEVEAQPRqwkkyDFHYDNVLWALLTLFTVSTGEGWPMVLKHSVDATYE 1431
Cdd:pfam00520 153 GKL----------------------KTWENPDNG-----RTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKGE 200
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
482-766 |
2.36e-49 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 176.30 E-value: 2.36e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 482 AQSFYWVVLCVVALNTLCVAMVHYNQPQ-RLTTALYFAEFVFLGLFLTEMSLKMYGLGP-RSYFRSSFNCFDFGVIVGSI 559
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQPEePLTTVLEILDYVFTGIFTLEMLLKIIAAGFkKRYFRSPWNILDFVVVLPSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 560 FEVVWAAIKPGtsFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFK 639
Cdd:pfam00520 81 ISLVLSSVGSL--SGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKTW 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 640 DE--TPTTNFDTFPAAILTVFQTgpdqaigpsdvhdcpfsrllphgplagspasihlvtgtqsqlsqiLTGEDWNAVMYH 717
Cdd:pfam00520 159 ENpdNGRTNFDNFPNAFLWLFQT---------------------------------------------MTTEGWGDIMYD 193
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 861446019 718 GIESQGgvskGMFSSFYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTK 766
Cdd:pfam00520 194 TIDGKG----EFWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELTERTE 238
|
|
| Ca_chan_IQ |
pfam08763 |
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular ... |
1841-1918 |
1.10e-41 |
|
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular calcium entry in response to changes in membrane potential. The isoleucine-glutamine (IQ) motif in the voltage gated calcium channel IQ domain interacts with hydrophobic pockets of Ca2+/calmodulin. The interaction regulates two self-regulatory calcium dependent feedback mechanism, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF).
Pssm-ID: 462591 Cd Length: 77 Bit Score: 147.74 E-value: 1.10e-41
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 861446019 1841 TSTLMALIRTALEIKLAPAGtKQHQCDAELRKEISSVWANLPQKTLDLLVPPHKPDEMTVGKVYAALMIFDFYKQNKT 1918
Cdd:pfam08763 1 TATLFALIRTSLKIKLAPAG-EMDQADAELRKIIKKIWPRLSQKTLDLLVPPPSDDEMTVGKIYAALLIQDYYRQNKA 77
|
|
| GPHH |
pfam16905 |
Voltage-dependent L-type calcium channel, IQ-associated; GPHH is a sequence motif found in ... |
1777-1830 |
1.38e-31 |
|
Voltage-dependent L-type calcium channel, IQ-associated; GPHH is a sequence motif found in this short domain on voltage-dependent L-type calcium channel proteins in eukaryotes. The domain is closely associated with the IQ-domain, pfam08763.
Pssm-ID: 465306 Cd Length: 54 Bit Score: 118.14 E-value: 1.38e-31
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 861446019 1777 EFIRVWAEYDPAACGRISYNDMFEMLKHMSPPLGLGKKCPARVAYKRLVRMNMP 1830
Cdd:pfam16905 1 EFVRVWAEYDPAATGRISYQDMYELLRRISPPLGFGKKCPARVAYKRLVRMNMP 54
|
|
| PKD_channel |
pfam08016 |
Polycystin cation channel; This family contains the cation channel region from group II of ... |
1544-1761 |
4.53e-11 |
|
Polycystin cation channel; This family contains the cation channel region from group II of Transient receptor potential (TRP) channels, the TRPP subfamily, including PKD1, PKD2, PKD2L and mucolipin proteins.
Pssm-ID: 462341 [Multi-domain] Cd Length: 225 Bit Score: 64.99 E-value: 4.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1544 YDAPYEYELMLkCLNI--VFTSMFSMECVLKIIAFGvLNYFRDAWNVFDFVTVLGSITDILV----TEIANNFIN----- 1612
Cdd:pfam08016 2 YVTNRSLFILL-CEIVfvVFFLYFVVEEILKIRKHR-PSYLRSVWNLLDLAIVILSVVLIVLniyrDFLADRLIKsveas 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1613 -LSFLRLFRAARL----------------IKLLRQ---GYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGN 1672
Cdd:pfam08016 80 pVTFIDFDRVAQLdnlyriilaflvfltwLKLFKVlrfNKTMSLFTKTLSRAWKDLAGFALMFVIFFFAYAQFGYLLFGT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1673 ialdddtsinRHNNFRTFLQALMLLFRsatgeawheIMLSCLSNRACDpnanasECGSDFAYFYFVSFIFLCSFLMLNLF 1752
Cdd:pfam08016 160 ----------QAPNFSNFVKSILTLFR---------TILGDFGYNEIF------SGNRVLGPLLFLTFVFLVIFILLNLF 214
|
....*....
gi 861446019 1753 VAVIMDNFE 1761
Cdd:pfam08016 215 LAIINDSYV 223
|
|
| Ca_chan_IQ |
smart01062 |
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular ... |
1896-1926 |
2.67e-10 |
|
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular calcium entry in response to changes in membrane potential. The isoleucine-glutamine (IQ) motif in the voltage gated calcium channel IQ domain interacts with hydrophobic pockets of Ca2+/calmodulin. The interaction regulates two self-regulatory calcium dependent feedback mechanism, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF).
Pssm-ID: 198130 Cd Length: 31 Bit Score: 57.23 E-value: 2.67e-10
10 20 30
....*....|....*....|....*....|.
gi 861446019 1896 DEMTVGKVYAALMIFDFYKQNKTTRDQIHQA 1926
Cdd:smart01062 1 DELTVGKIYAAMLIQDYFRQFKSRKEQELLG 31
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
2033-2357 |
7.33e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 54.94 E-value: 7.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2033 DPDGEPQPGLQSQGRAASMPRLAAETQPAPdaSPMKRSISTLAQRPHG-AHLCSAALDRLAPGQVPHHHHHRCHRRRDKK 2111
Cdd:PHA03247 2546 DDAGDPPPPLPPAAPPAAPDRSVPPPRPAP--RPSEPAVTSRARRPDApPQSARPRAPVDDRGDPRGPAPPSPLPPDTHA 2623
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2112 QKSLEKGPSLSADTDGAPSSTPGPGLA-PGEGPAGCRHERRQgRGRSQERRQPSSSSSEKQRfyscdrfgGREPPQPKPS 2190
Cdd:PHA03247 2624 PDPPPPSPSPAANEPDPHPPPTVPPPErPRDDPAPGRVSRPR-RARRLGRAAQASSPPQRPR--------RRAARPTVGS 2694
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2191 VSSHPTSPTAGLEPAPAPQGGGSVTGSPLLSTS-------------------GASTPGRGGRRQLPQTPLTPRPSitykT 2251
Cdd:PHA03247 2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGPAAarqaspalpaapappavpaGPATPGGPARPARPPTTAGPPAP----A 2770
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2252 ANSSPVhfGGAQSSLSAfsPGRLSRGLSEHNALLQRDPLSQPLAPSSRIGSDPylgqrlDSEASAHALPEDTLTFEEAMA 2331
Cdd:PHA03247 2771 PPAAPA--AGPPRRLTR--PAVASLSESRESLPSPWDPADPPAAVLAPAAALP------PAASPAGPLPPPTSAQPTAPP 2840
|
330 340
....*....|....*....|....*.
gi 861446019 2332 SNSGRSSRTSYVSSLTSQSHPLRRVP 2357
Cdd:PHA03247 2841 PPPGPPPPSLPLGGSVAPGGDVRRRP 2866
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
2002-2259 |
2.86e-06 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 52.87 E-value: 2.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2002 APLERGHSAEIPVGQRGtLAVDVQMQSAALRDPD--GEPQPGLQSQGRAASMPRL--AAETQPAPDASPM-------KRS 2070
Cdd:PHA03307 155 AGASPAAVASDAASSRQ-AALPLSSPEETARAPSspPAEPPPSTPPAAASPRPPRrsSPISASASSPAPApgrsaadDAG 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2071 ISTLAQRPHGAHLCSAALDRLAPGQVPHHHHHRCHRRRDK--KQKSLEKGPSLSADTDGAPSSTPGPGlAPGEGPA--GC 2146
Cdd:PHA03307 234 ASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASgwNGPSSRPGPASSSSSPRERSPSPSPS-SPGSGPApsSP 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2147 RHERRQGRGRSQERRQPSSSS-SEKQRFYSCDRFGGREPPQPKPSVSSHPTSPTAGLEPAPAPQGGGSVTGSPLLSTSGA 2225
Cdd:PHA03307 313 RASSSSSSSRESSSSSTSSSSeSSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARA 392
|
250 260 270
....*....|....*....|....*....|....
gi 861446019 2226 STPGRGGRRQLPQTPLTPRPSITYKTANSSPVHF 2259
Cdd:PHA03307 393 AVAGRARRRDATGRFPAGRPRPSPLDAGAASGAF 426
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1991-2373 |
7.67e-06 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 51.71 E-value: 7.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1991 QRTQEALYEARAPLERGHSAEIPV--GQRGTLAVDVQMQSAALRDPDGEPQPG-----LQSQGRAASMPRL--AAETQPA 2061
Cdd:PHA03307 22 PRPPATPGDAADDLLSGSQGQLVSdsAELAAVTVVAGAAACDRFEPPTGPPPGpgteaPANESRSTPTWSLstLAPASPA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2062 PDASPMKRSISTLAQRPhgahlcsAALDRLAPGQVPHHHHHrchrrrdkkqkslEKGPSLSADTDGAPSSTPGPGLAPGE 2141
Cdd:PHA03307 102 REGSPTPPGPSSPDPPP-------PTPPPASPPPSPAPDLS-------------EMLRPVGSPGPPPAASPPAAGASPAA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2142 GPAGCRHERRQGRGRSQ-ERRQPSSSSSEKQRFYSCDRFGGREPPQPKPSVSSHPTSPtaglepaPAPQGGGSVTGSPLL 2220
Cdd:PHA03307 162 VASDAASSRQAALPLSSpEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASS-------PAPAPGRSAADDAGA 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2221 STSGASTPGRGGRRQLPQTpLTPRPSITYKTANSSPVHFGGAQSSLSAFSPGRLSRGLSEHNALLQRDPLSQPLAPSSRI 2300
Cdd:PHA03307 235 SSSDSSSSESSGCGWGPEN-ECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPR 313
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 861446019 2301 GSDPYLGQR---LDSEASAHALPEDTLTFEEAMASNSGRSSRTSYVS--SLTSQSHPLRRVPNGYHCTLGLSTGGRAR 2373
Cdd:PHA03307 314 ASSSSSSSRessSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPAdpSSPRKRPRPSRAPSSPAASAGRPTRRRAR 391
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
2028-2326 |
1.18e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 51.09 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2028 SAALRDPDGEPQPGL---QSQGRAASMPRLAAETQPAPDASPMKRSISTL--AQRPHGAHLCSAALDRLAPGQVPHHHhh 2102
Cdd:PHA03247 2769 PAPPAAPAAGPPRRLtrpAVASLSESRESLPSPWDPADPPAAVLAPAAALppAASPAGPLPPPTSAQPTAPPPPPGPP-- 2846
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2103 rchrrrdkkQKSLEKGPSLSAdtdGAPSSTPGPGLAPGEGPAGCRHERRQGRGRSQERRQPSS---------------SS 2167
Cdd:PHA03247 2847 ---------PPSLPLGGSVAP---GGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESfalppdqperppqpqAP 2914
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2168 SEKQRFYSCDRFGGREPPQPKPSVSSHPTSPTAGLEPAPAPQGGgsvTGSPLLstsGASTPGRGG--RRQLPQtpltPRP 2245
Cdd:PHA03247 2915 PPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGA---VPQPWL---GALVPGRVAvpRFRVPQ----PAP 2984
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2246 SITYKTANSSPVHfggaQSSLSAFSPGRLSRGLSEhnallQRDP----LSQPLAPS---------SRIGSDPylgQRLDS 2312
Cdd:PHA03247 2985 SREAPASSTPPLT----GHSLSRVSSWASSLALHE-----ETDPppvsLKQTLWPPddtedsdadSLFDSDS---ERSDL 3052
|
330
....*....|....
gi 861446019 2313 EASAHALPEDTLTF 2326
Cdd:PHA03247 3053 EALDPLPPEPHDPF 3066
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
923-1170 |
2.63e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 46.12 E-value: 2.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 923 KAPTTLPSASEQAQDQAGAQRADRMDGAEpgaRGEHARPRH-SRSKEATGGQEARGERSRGpeggrrhhrmhrhGPDPSK 1001
Cdd:PHA03169 44 AKPAPPAPTTSGPQVRAVAEQGHRQTESD---TETAEESRHgEKEERGQGGPSGSGSESVG-------------SPTPSP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1002 DKDKDGPVAKGERRARHRGPRAGPKEAESGEEPGrRHRARHKAPPTQEAMEKEGEGPEGDQEVRSRQLKDPPcdleargv 1081
Cdd:PHA03169 108 SGSAEELASGLSPENTSGSSPESPASHSPPPSPP-SHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEP-------- 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 1082 mgvDPVHALPstclQKVEEQPEDADNQRNVTRMGSQPSDPStavhapvtltDPAGETtavPSGNVDLESQAEGKKEVEAD 1161
Cdd:PHA03169 179 ---EPPTSEP----EPDSPGPPQSETPTSSPPPQSPPDEPG----------EPQSPT---PQQAPSPNTQQAVEHEDEPT 238
|
....*....
gi 861446019 1162 DMLRSGPRP 1170
Cdd:PHA03169 239 EPEREGPPF 247
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
889-1068 |
2.67e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 46.44 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 889 SRDGPRGPTGGKAQSEATEAMDPPRRHHRHRDRDKAPTTLPSASEQAQDQAGAQRADRMDGAEPGARGEHARPRHSRSKE 968
Cdd:PRK12678 79 RAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARA 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 969 ATGGQEARGERSRGPEggrrhhrmhrhgpdpskdkDKDGPVAKGERRARHRGPRAGPKEAESGEEPGRRHRARHKApptq 1048
Cdd:PRK12678 159 DAAERTEEEERDERRR-------------------RGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRR---- 215
|
170 180
....*....|....*....|
gi 861446019 1049 eamEKEGEGPEGDQEVRSRQ 1068
Cdd:PRK12678 216 ---EERGRRDGGDRRGRRRR 232
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
2028-2355 |
2.02e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 43.62 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2028 SAALRDPDGEPqpglqsqGRAASMPRLAAETQPAPDASPMKRSISTLAQRPHGAhlcsAALDRLAPGQVPHHHHHRCHRR 2107
Cdd:PHA03307 755 DALFSNPSLVP-------AKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGR----LRRSGPAADAASRTASKRKSRS 823
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2108 RDKKQKSLEKGPSLSAdtdGAPSSTPGPGLAPGEGPAGcrherRQGRGRSQERRQPSSSSSEKQRfyscdrfggREPPQP 2187
Cdd:PHA03307 824 HTPDGGSESSGPARPP---GAAARPPPARSSESSKSKP-----AAAGGRARGKNGRRRPRPPEPR---------ARPGAA 886
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2188 KPSVSSHPTSPTAGLEPAPAPQGGGSVTGSPLlstsGASTPGRGGRRQLPQTPLTPRPSityktansspvhfggaQSSLS 2267
Cdd:PHA03307 887 APPKAAAAAPPAGAPAPRPRPAPRVKLGPMPP----GGPDPRGGFRRVPPGDLHTPAPS----------------AAALA 946
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2268 AFSPGRLSRGLSEHnallqrdplsqPLAPssrigsdpylgqrldsEASAHAlpedtLTFE-EAMAS-----NSGRSSRTS 2341
Cdd:PHA03307 947 AYCPPEVVAELVDH-----------PLFP----------------EPWRPA-----LAFDpEALAEiaarcGGPPPRSGS 994
|
330
....*....|....
gi 861446019 2342 YVSSLTSqSHPLRR 2355
Cdd:PHA03307 995 AFGPLRA-SGPLRR 1007
|
|
| AF-4 |
pfam05110 |
AF-4 proto-oncoprotein N-terminal region; This family consists of AF4 (Proto-oncogene AF4) and ... |
2033-2198 |
3.62e-03 |
|
AF-4 proto-oncoprotein N-terminal region; This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homolog Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila.
Pssm-ID: 461550 [Multi-domain] Cd Length: 514 Bit Score: 42.42 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2033 DPDGEPQPGLQSQGRAASMPRLAAETQPAPDASPMKRSISTLaQRPHGAH--------LCSAALDRLAPGQvphhhhHRC 2104
Cdd:pfam05110 95 DKTSGLPPSFHTSSHSQPMGPPSSSSPSVSSSQSQKKSQART-EPAHGGHsssgsqssQRSQGQSRSKGGQ------ESH 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2105 HRRRDKKQKSLEKGPSLSADTDGAPSSTPG-PGLAPGEGPAGCRHERRQGrgrsQERRQPSSSSSEKQRFYS---CDR-F 2179
Cdd:pfam05110 168 SSSHHKRQERREDLFSCASLSHSLEELSPLlSSLSSPVKPLSPSHSRQHT----GSKAQNSSDHHGKEYSHSkspRDSeA 243
|
170
....*....|....*....
gi 861446019 2180 GGREPPQPKPSVSSHPTSP 2198
Cdd:pfam05110 244 GSHGPESPSTSLLASSSQL 262
|
|
| Hamartin |
pfam04388 |
Hamartin protein; This family includes the hamartin protein which is thought to function as a ... |
2109-2304 |
4.34e-03 |
|
Hamartin protein; This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking.
Pssm-ID: 461287 [Multi-domain] Cd Length: 730 Bit Score: 42.35 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2109 DKKQKSLEKGpSLSADTDgaPSSTPGPGLAPGEGPAGCRH---ERRQGRGRSQERRQPSSSSSEkqrfyscdRFGGREPP 2185
Cdd:pfam04388 259 DPKEASCEEG-YSSSAAD--PTASPYTDQQSSYGSSTSTPsstPRLQLSSSSGTSPPYLSPPSI--------RLKTDSFP 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 2186 QPKPSVSSH-PTSPTA-GLEPAPAPQGGGSvtgSPLLSTSGASTPGRGGRRQLPQTPLT-PRPSITYKTANSSPVHfgGA 2262
Cdd:pfam04388 328 LWSPSSVCGmTTPPTSpGMVPTTPSELSPS---SSHLSSRGSSPPEAAGEATPETTPAKdSPYLKQPPPLSDSHVH--RA 402
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 861446019 2263 QSSLSA-FSPGRLSRGLSEHNALLQRdplSQPLAPSSRIGSDP 2304
Cdd:pfam04388 403 LPASSQpSSPPRKDGRSQSSFPPLSK---QAPTNPNSRGLLEP 442
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
889-1068 |
8.25e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 41.43 E-value: 8.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 889 SRDGPRGPTGGKAQSEATEAMDPPRRHHRHRDRDKAPTTLPSASEQAQDQAGAQRADRMD-------GAEPGARGEHARP 961
Cdd:PRK12678 81 ARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGaarkageGGEQPATEARADA 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 962 RHSRSKEATGGQEARGERS-RGPEGGRRHHRMHRHGPDPSKDKDKDGPVAKGERRARHRGPRAGPKEAESGEEPGRRHRA 1040
Cdd:PRK12678 161 AERTEEEERDERRRRGDREdRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARG 240
|
170 180
....*....|....*....|....*...
gi 861446019 1041 RHKAPPTQEAMEKEGEGPEGDQEVRSRQ 1068
Cdd:PRK12678 241 DDNREDRGDRDGDDGEGRGGRRGRRFRD 268
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
868-1047 |
8.61e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.70 E-value: 8.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 868 TSRHLRPDMKTHLDRPLVVEHSRDGPRGPTGGKAQSEATEAMDPPRRHHRHRDRDKAPTTLPSASEQAQDQAGAQradrm 947
Cdd:PHA03307 197 TPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWE----- 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 948 dgaepGARGEHARPRHSRSKEATGGQEARGE----RSRGPEGGRRHHRMHRHGPDPSKDKDKDGPVAKGER-------RA 1016
Cdd:PHA03307 272 -----ASGWNGPSSRPGPASSSSSPRERSPSpspsSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRgaavspgPS 346
|
170 180 190
....*....|....*....|....*....|..
gi 861446019 1017 RHRGPRAG-PKEAESGEEPGRRHRARHKAPPT 1047
Cdd:PHA03307 347 PSRSPSPSrPPPPADPSSPRKRPRPSRAPSSP 378
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
898-1068 |
9.45e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 41.04 E-value: 9.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 898 GGKAQSEATEAMDPPRRHHRHRDRDKAPTTLPSASEQAQDQAGAQRADrmdgAEPGARGEHARPRHSRSKEATGGQEARG 977
Cdd:PRK12678 62 GAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAAR----AAAAAAAEAASAPEAAQARERRERGEAA 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 861446019 978 ERSRGPEGGRRHHRMHRHGPDPSKDKDKDGPVAKGERRaRHRGPRAGPKEAESGEEPGRRHRARHKAPPTQEAMEKEGEG 1057
Cdd:PRK12678 138 RRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR-GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRRE 216
|
170
....*....|.
gi 861446019 1058 PEGDQEVRSRQ 1068
Cdd:PRK12678 217 ERGRRDGGDRR 227
|
|
| |
