|
Name |
Accession |
Description |
Interval |
E-value |
| RPAP3_C |
pfam13877 |
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ... |
539-629 |
9.32e-33 |
|
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.
Pssm-ID: 464012 Cd Length: 91 Bit Score: 121.23 E-value: 9.32e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 539 PANSFQLESDFRQLRSSPEMLYQYVKKIEPSLYPKLFQKNLDPDVFNQIIKILHDFYVEREKPALIFEVLERLSQLRRFD 618
Cdd:pfam13877 1 PRNAYEFERDWRRLRKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENEDPALVLEILQGLSKVPRFD 80
|
90
....*....|.
gi 1046895582 619 MAVMFMSGTER 629
Cdd:pfam13877 81 LAVMFLSKAEK 91
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
126-352 |
5.84e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 101.24 E-value: 5.84e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 126 VRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYA 205
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 206 RRGAARFALQKLEDARKDYVKVLELEPDNFEATNelrkidqaltskenshpkdiaavikpaegerkanedqrgrqkaiae 285
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALY---------------------------------------------- 114
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1046895582 286 kDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKA 352
Cdd:COG0457 115 -NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA 180
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
163-374 |
2.77e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 99.31 E-value: 2.77e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 163 DPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEPDNFEATNelr 242
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN--- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 243 kidqaltskenshpkdiaavikpaegerkanedqrgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANR 322
Cdd:COG0457 81 --------------------------------------------NLGLALQALGRYEEALEDYDKALELDPDDAEALYNL 116
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1046895582 323 AMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFE 374
Cdd:COG0457 117 GLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLE 168
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
133-383 |
1.06e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 95.57 E-value: 1.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 133 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARF 212
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 213 ALQKLEDARKDYVKVLELEPDNFEATNELRKIDQALtskenshpKDIAAVIKPAEGERKANEDQrgrqkAIAEKDLGNGF 292
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQE--------GDWEKAIEVLERLLKLGPEN-----AHAYCELAELY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 293 FKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQD 372
Cdd:COG2956 155 LEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALEL 234
|
250
....*....|.
gi 1046895582 373 FETVLLLEPGN 383
Cdd:COG2956 235 LRKALELDPSD 245
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
194-397 |
4.33e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 90.07 E-value: 4.33e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 194 IALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEPDNFEATNelrkidqaltskenshpkdiaavikpaegerkan 273
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALY---------------------------------- 46
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 274 edqrgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAF 353
Cdd:COG0457 47 -------------NLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEAL 113
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1046895582 354 ARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKKEL 397
Cdd:COG0457 114 YNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
282-405 |
3.04e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 78.90 E-value: 3.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 282 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTART 361
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1046895582 362 FLGKINEAKQDFETVLLLEPGNKQAVTELSRIkkeLIEKGRWDD 405
Cdd:COG0457 88 ALGRYEEALEDYDKALELDPDDAEALYNLGLA---LLELGRYDE 128
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
82-237 |
4.29e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 74.95 E-value: 4.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 82 KNRIKSFDYDAWAKLDVDSILDELDKEDstHDSVSQESESDEDgvRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMD 161
Cdd:COG4785 26 LAALLFAAVLALAIALADLALALAAAAL--AAAALAAERIDRA--LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALE 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1046895582 162 ADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEPDNFEA 237
Cdd:COG4785 102 LDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPER 177
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
133-337 |
4.79e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 78.50 E-value: 4.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 133 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARF 212
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 213 ALQKLEDARKDYVKVLELEPDNFEATNElrkidqaltskenshpkdiaavikpaegerkanedqrgrqkaiaekdLGNGF 292
Cdd:COG3914 158 RLGRLEEAIAALRRALELDPDNAEALNN-----------------------------------------------LGNAL 190
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1046895582 293 FKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAER 337
Cdd:COG3914 191 QDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDR 235
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
203-381 |
8.56e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 74.18 E-value: 8.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 203 AYARRGAARFALQKLEDARKDYVKVLELEPDNFEATnelrkIDQALTSKENSHPKDIAAVIKPAEgeRKANEDQRGRQKA 282
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLA-----LAIALADLALALAAAALAAAALAA--ERIDRALALPDLA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 283 IAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTF 362
Cdd:COG4785 74 QLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYY 153
|
170
....*....|....*....
gi 1046895582 363 LGKINEAKQDFETVLLLEP 381
Cdd:COG4785 154 LGRYELAIADLEKALELDP 172
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
126-377 |
1.45e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 74.38 E-value: 1.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 126 VRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYA 205
Cdd:COG2956 69 LERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYC 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 206 RRGAARFALQKLEDARKDYVKVLELEPDNFEATNELRKIdqaltskenshpkdiaavikpaegerkanedqrgrqkaiae 285
Cdd:COG2956 149 ELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAEL----------------------------------------- 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 286 kdlgngFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFArrgtartfLGK 365
Cdd:COG2956 188 ------YLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA--------LAD 253
|
250
....*....|..
gi 1046895582 366 INEAKQDFETVL 377
Cdd:COG2956 254 LLERKEGLEAAL 265
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
136-315 |
7.07e-14 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 73.67 E-value: 7.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 136 LKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQ 215
Cdd:PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 216 KLEDARKDYVKVLELEPDNFEATNELRKIDQALTsKENSHPKDIAAVIKPAEGERKANEDQRGRQKAIAEKDLGNGFFKE 295
Cdd:PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA-EEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKPKYRHEFYQ 163
|
170 180
....*....|....*....|
gi 1046895582 296 GKYEQAIECYTRGIAADSTN 315
Cdd:PLN03088 164 KPEEVVVTVFAKGVPAENVN 183
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
123-234 |
2.69e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 67.52 E-value: 2.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 123 EDGVRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTK 202
Cdd:COG4783 28 EKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE 107
|
90 100 110
....*....|....*....|....*....|..
gi 1046895582 203 AYARRGAARFALQKLEDARKDYVKVLELEPDN 234
Cdd:COG4783 108 AYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
126-237 |
4.62e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 72.33 E-value: 4.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 126 VRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYA 205
Cdd:COG3914 105 LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALN 184
|
90 100 110
....*....|....*....|....*....|..
gi 1046895582 206 RRGAARFALQKLEDARKDYVKVLELEPDNFEA 237
Cdd:COG3914 185 NLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
90-232 |
4.68e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 67.29 E-value: 4.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 90 YDAWAKLDVDSILDELDKEDSTHDSVSQESESDEDGVRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVL 169
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1046895582 170 PTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEP 232
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
140-247 |
8.33e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 65.80 E-value: 8.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 140 GNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLED 219
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90 100
....*....|....*....|....*...
gi 1046895582 220 ARKDYVKVLELEPDNFEATNELRKIDQA 247
Cdd:COG4235 104 AIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
132-405 |
9.54e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 71.65 E-value: 9.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 132 KALVLKekGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAAR 211
Cdd:TIGR02917 194 DALLLK--GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVD 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 212 FALQKLEDARKDYVKVLELEPDNFEA--------------TNELRKIDQALTSKENSHP-KDIAAVIKPAEGERKANEDQ 276
Cdd:TIGR02917 272 FQKKNYEDARETLQDALKSAPEYLPAlllagaseyqlgnlEQAYQYLNQILKYAPNSHQaRRLLASIQLRLGRVDEAIAT 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 277 RGRQKAIAEKD------LGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYS 350
Cdd:TIGR02917 352 LSPALGLDPDDpaalslLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELG 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 351 KA-------FARRG-------TARTFL--------------------GKINEAKQDFETVLLLEPGNKQAVTELSRIKke 396
Cdd:TIGR02917 432 RAdlllilsYLRSGqfdkalaAAKKLEkkqpdnaslhnllgaiylgkGDLAKAREAFEKALSIEPDFFPAAANLARID-- 509
|
....*....
gi 1046895582 397 lIEKGRWDD 405
Cdd:TIGR02917 510 -IQEGNPDD 517
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
111-383 |
1.28e-12 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 70.78 E-value: 1.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 111 THDSVSQESESDEDGVRVDSQK--ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPyNPVLPTNRASAYFRLKKFAVAES 188
Cdd:TIGR00990 103 PADELPEIDESSVANLSEEERKkyAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 189 DCNLAIALSRSYTKAYARRGAA-------------------------------------RFALQKLEDARKDYVKVL--- 228
Cdd:TIGR00990 182 DTTAALELDPDYSKALNRRANAydglgkyadalldltasciidgfrneqsaqaverllkKFAESKAKEILETKPENLpsv 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 229 ------------ELEPDNFEATNELRK-IDQALTSKENSHPKDIAA--VIKPAEGERKA-NEDQRGRQKAIAEKDLGNGF 292
Cdd:TIGR00990 262 tfvgnylqsfrpKPRPAGLEDSNELDEeTGNGQLQLGLKSPESKADesYEEAARAFEKAlDLGKLGEKEAIALNLRGTFK 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 293 FKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQD 372
Cdd:TIGR00990 342 CLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKD 421
|
330
....*....|.
gi 1046895582 373 FETVLLLEPGN 383
Cdd:TIGR00990 422 YQKSIDLDPDF 432
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
272-405 |
3.95e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 69.25 E-value: 3.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 272 ANEDQRGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSK 351
Cdd:COG3914 68 AAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE 147
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1046895582 352 AFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIkkeLIEKGRWDD 405
Cdd:COG3914 148 AYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA---LQDLGRLEE 198
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
173-385 |
4.95e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 68.87 E-value: 4.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 173 RASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEPDNFEATNelrkidqaltske 252
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL------------- 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 253 nshpkdiaavikpaegerkanedqrgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKY 332
Cdd:COG3914 151 ----------------------------------NLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRL 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1046895582 333 EEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQ 385
Cdd:COG3914 197 EEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSE 249
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
293-382 |
5.02e-12 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 67.89 E-value: 5.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 293 FKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQD 372
Cdd:PLN03088 13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA 92
|
90
....*....|
gi 1046895582 373 FETVLLLEPG 382
Cdd:PLN03088 93 LEKGASLAPG 102
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
130-248 |
8.22e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 63.29 E-value: 8.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 130 SQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGA 209
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 1046895582 210 ARFALQKLEDARKDYVKVLELEPDNFEATNELRKIDQAL 248
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
255-381 |
9.62e-12 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 63.44 E-value: 9.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 255 HPKDIAAVIKPAEGERKANEDQRGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEE 334
Cdd:COG5010 27 YEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDE 106
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1046895582 335 AERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEP 381
Cdd:COG5010 107 AKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
203-383 |
1.75e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.13 E-value: 1.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 203 AYARRGAARFALQKLEDARKDYVKVLELEPDNFEATNELRKIdqaltskenshpkdiaavikpaegerkanedqrgrqka 282
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEI-------------------------------------- 47
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 283 iaekdlgngFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTF 362
Cdd:COG4783 48 ---------LLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118
|
170 180
....*....|....*....|.
gi 1046895582 363 LGKINEAKQDFETVLLLEPGN 383
Cdd:COG4783 119 LGRPDEAIAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
143-233 |
1.89e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.57 E-value: 1.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 143 YFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAEsDCNLAIALSRSYTKAYARRGAARFALQKLEDARK 222
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 1046895582 223 DYVKVLELEPD 233
Cdd:COG3063 81 YLERALELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
280-405 |
2.73e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 61.75 E-value: 2.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 280 QKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTA 359
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1046895582 360 RTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKKELiekGRWDD 405
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL---GRPDE 124
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
123-248 |
3.46e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 64.37 E-value: 3.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 123 EDGVRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTK 202
Cdd:COG2956 100 EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR 179
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1046895582 203 AYARRGAARFALQKLEDARKDYVKVLELEPDNFEATNELRKIDQAL 248
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL 225
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
288-395 |
4.08e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.79 E-value: 4.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 288 LGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKIN 367
Cdd:COG4235 23 LGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYA 102
|
90 100
....*....|....*....|....*...
gi 1046895582 368 EAKQDFETVLLLEPGNKQAVTELSRIKK 395
Cdd:COG4235 103 EAIAAWQKLLALLPADAPARLLEASIAE 130
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
282-406 |
4.36e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 66.17 E-value: 4.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 282 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTART 361
Cdd:COG3914 112 AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQ 191
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1046895582 362 FLGKINEAKQDFETVLLLEPGNKQAVTELSRIkkeLIEKGRWDDV 406
Cdd:COG3914 192 DLGRLEEAIAAYRRALELDPDNADAHSNLLFA---LRQACDWEVY 233
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
221-399 |
2.47e-10 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 63.46 E-value: 2.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 221 RKDYVKvlELEPDNFEATNELRKIDQALTSKENSHPkDIAAVIKPAEGERKAnedqrgrqKAIAEKDLGNGFFKEGKYEQ 300
Cdd:TIGR00990 77 RKQAEK--ETEGKTEEKKSTAPKNAPVEPADELPEI-DESSVANLSEEERKK--------YAAKLKEKGNKAYRNKDFNK 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 301 AIECYTRGIAAdSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFeTVLLLE 380
Cdd:TIGR00990 146 AIKLYSKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL-TASCII 223
|
170 180
....*....|....*....|.
gi 1046895582 381 PG--NKQAVTELSRIKKELIE 399
Cdd:TIGR00990 224 DGfrNEQSAQAVERLLKKFAE 244
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
173-346 |
5.70e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.89 E-value: 5.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 173 RASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEPDNFEAtnelrkidqaltske 252
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEA--------------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 253 nshpkdiaavikpaegerkanedqrgrqkaiaEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKY 332
Cdd:COG4783 75 --------------------------------RLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRP 122
|
170
....*....|....
gi 1046895582 333 EEAERDCTQAILLD 346
Cdd:COG4783 123 DEAIAALEKALELD 136
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
166-346 |
1.25e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 58.77 E-value: 1.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 166 NPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYT------KAYARRGAARFALQKLEDARKDYVKVLELEPDNFEATN 239
Cdd:COG4785 32 AAVLALAIALADLALALAAAALAAAALAAERIDRALalpdlaQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYN 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 240 elrkidqaltskenshpkdiaavikpaegerkanedqrgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADSTNALLP 319
Cdd:COG4785 112 -----------------------------------------------NRGLAYLLLGDYDAALEDFDRALELDPDYAYAY 144
|
170 180
....*....|....*....|....*..
gi 1046895582 320 ANRAMAYLKVQKYEEAERDCTQAILLD 346
Cdd:COG4785 145 LNRGIALYYLGRYELAIADLEKALELD 171
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
300-405 |
3.59e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.40 E-value: 3.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 300 QAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLL 379
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|....*.
gi 1046895582 380 EPGNKQAVTELSRIkkeLIEKGRWDD 405
Cdd:COG4235 81 DPDNPEALYLLGLA---AFQQGDYAE 103
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
288-404 |
3.78e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 58.20 E-value: 3.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 288 LGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKIN 367
Cdd:COG2956 48 LGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWE 127
|
90 100 110
....*....|....*....|....*....|....*..
gi 1046895582 368 EAKQDFETVLLLEPGNKQAVTELSRIkkeLIEKGRWD 404
Cdd:COG2956 128 KAIEVLERLLKLGPENAHAYCELAEL---YLEQGDYD 161
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
143-390 |
4.01e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 59.71 E-value: 4.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 143 YFKQGKYDEAIECYT-KGMDADPYNPVLPTNRASAYFRLKKFAVAESdcNLAIALSRSYTKAYARRGAARFALQ--KLED 219
Cdd:TIGR02917 100 YLLQGKFQQVLDELPgKTLLDDEGAAELLALRGLAYLGLGQLELAQK--SYEQALAIDPRSLYAKLGLAQLALAenRFDE 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 220 ARKDYVKVLELEPDNFEATN-------ELRKIDQALTSKENS---HPKDIAAVIKPAEGERKANEDQRGRQKA-----IA 284
Cdd:TIGR02917 178 ARALIDEVLTADPGNVDALLlkgdlllSLGNIELALAAYRKAialRPNNIAVLLALATILIEAGEFEEAEKHAdallkKA 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 285 EKDLGNGF------FKEGKYEQAIECYTR---------------GIAA----DSTNAL---------LPANR------AM 324
Cdd:TIGR02917 258 PNSPLAHYlkalvdFQKKNYEDARETLQDalksapeylpalllaGASEyqlgNLEQAYqylnqilkyAPNSHqarrllAS 337
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1046895582 325 AYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTEL 390
Cdd:TIGR02917 338 IQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQL 403
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
292-381 |
9.30e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.25 E-value: 9.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 292 FFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERdCTQAILLDGSYSKAFARRGTARTFLGKINEAKQ 371
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 1046895582 372 DFETVLLLEP 381
Cdd:COG3063 81 YLERALELDP 90
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
107-399 |
9.51e-09 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 58.46 E-value: 9.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 107 KEDSTHDSVSQESESDEDGVRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVA 186
Cdd:TIGR00990 305 KADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 187 ESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEPDNFEATNELrkidQALTSKENSHPKDIAAVikpa 266
Cdd:TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL----GVTQYKEGSIASSMATF---- 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 267 egerkanedQRGRQKAIAEKDLGNgFFKE-----GKYEQAIECYTRGIAAD------STNALLPANRAMAYLK-VQKYEE 334
Cdd:TIGR00990 457 ---------RRCKKNFPEAPDVYN-YYGEllldqNKFDEAIEKFDTAIELEketkpmYMNVLPLINKALALFQwKQDFIE 526
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1046895582 335 AERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETvlllepgnkqaVTELSRIKKELIE 399
Cdd:TIGR00990 527 AENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER-----------AAELARTEGELVQ 580
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
309-405 |
1.48e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 56.17 E-value: 1.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 309 IAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVT 388
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90
....*....|....*..
gi 1046895582 389 ELSRIkkeLIEKGRWDD 405
Cdd:COG0457 81 NLGLA---LQALGRYEE 94
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
257-386 |
2.04e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 55.31 E-value: 2.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 257 KDIAAVIKPAEGERKANEDQRGRQKAIAEKD----LGNGFFKEGKYEQAIECYTRGIAADS--------TNALLPANRAM 324
Cdd:COG4785 2 YALALALLLALALAAAAASKAAILLAALLFAavlaLAIALADLALALAAAALAAAALAAERidralalpDLAQLYYERGV 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1046895582 325 AYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQA 386
Cdd:COG4785 82 AYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
143-391 |
7.83e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.86 E-value: 7.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 143 YFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARK 222
Cdd:TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVS 622
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 223 DYVKVLELEPDNFEATNEL-------RKIDQALTSKENS---HPKDIAAVI----------KPAEGERKANEDQRGRQK- 281
Cdd:TIGR02917 623 SFKKLLALQPDSALALLLLadayavmKNYAKAITSLKRAlelKPDNTEAQIglaqlllaakRTESAKKIAKSLQKQHPKa 702
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 282 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLpANRAMAYLKVQKYEEAERDCTQailldgsYSKAFARRGTART 361
Cdd:TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALLASGNTAEAVKTLEA-------WLKTHPNDAVLRT 774
|
250 260 270
....*....|....*....|....*....|....*..
gi 1046895582 362 FLGKI-------NEAKQDFETVLLLEPGNKQAVTELS 391
Cdd:TIGR02917 775 ALAELylaqkdyDKAIKHYQTVVKKAPDNAVVLNNLA 811
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
126-261 |
2.42e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 52.32 E-value: 2.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 126 VRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYA 205
Cdd:COG0457 103 LELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAA 182
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1046895582 206 RRGAARFALQKLEDARKDYVKVLELEPDNFEATNELRKIDQALTSKENSHPKDIAA 261
Cdd:COG0457 183 LGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
151-237 |
6.74e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.85 E-value: 6.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 151 EAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLEL 230
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
....*..
gi 1046895582 231 EPDNFEA 237
Cdd:COG4235 81 DPDNPEA 87
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
133-166 |
1.67e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 44.74 E-value: 1.67e-06
10 20 30
....*....|....*....|....*....|....
gi 1046895582 133 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYN 166
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
307-404 |
1.75e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.42 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 307 RGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQA 386
Cdd:COG5010 45 AGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA 124
|
90
....*....|....*...
gi 1046895582 387 VTELSRIkkeLIEKGRWD 404
Cdd:COG5010 125 YSNLAAL---LLSLGQDD 139
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
133-166 |
3.15e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 43.95 E-value: 3.15e-06
10 20 30
....*....|....*....|....*....|....
gi 1046895582 133 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYN 166
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
140-239 |
6.11e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 49.61 E-value: 6.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 140 GNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLED 219
Cdd:COG3914 153 GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEV 232
|
90 100
....*....|....*....|
gi 1046895582 220 ARKDYVKVLELEPDNFEATN 239
Cdd:COG3914 233 YDRFEELLAALARGPSELSP 252
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
161-346 |
7.66e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.49 E-value: 7.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 161 DADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEPDNFEATNe 240
Cdd:COG5010 14 LLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYY- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 241 lrkidqaltskenshpkdiaavikpaegerkanedqrgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPA 320
Cdd:COG5010 93 ----------------------------------------------NLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS 126
|
170 180
....*....|....*....|....*.
gi 1046895582 321 NRAMAYLKVQKYEEAERDCTQAILLD 346
Cdd:COG5010 127 NLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
140-180 |
9.59e-06 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 42.84 E-value: 9.59e-06
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1046895582 140 GNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRL 180
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
142-247 |
1.43e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.60 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 142 KYFKQGKYDEAIECYTKGMDADPYNPVLPT---NRASAYFRLKKFAVAESDCNLAIAL---SRSYTKAYARRGAARFALQ 215
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNSPLAPDalyWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLELG 81
|
90 100 110
....*....|....*....|....*....|..
gi 1046895582 216 KLEDARKDYVKVLELEPDNFEATNELRKIDQA 247
Cdd:COG1729 82 DYDKARATLEELIKKYPDSEAAKEARARLARL 113
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
325-405 |
1.80e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.62 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 325 AYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQdFETVLLLEPGNKQAVTELSRIkkeLIEKGRWD 404
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAEL---LLELGDYD 76
|
.
gi 1046895582 405 D 405
Cdd:COG3063 77 E 77
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
140-387 |
2.61e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.39 E-value: 2.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 140 GNKYFKQGKYDEAIECYTK----GMDADPYNPVLptnrASAYFRLKKF--AVAESDcNLAIALSRSYTKAYARRGAARFA 213
Cdd:TIGR02917 63 GKIYLALGDYAAAEKELRKalslGYPKNQVLPLL----ARAYLLQGKFqqVLDELP-GKTLLDDEGAAELLALRGLAYLG 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 214 LQKLEDARKDYVKVLELEPDNFEATNELRKIdQALTSKENSHPKDIAAVIKPAEGERKANEDQrgrqkaiaekdlGNGFF 293
Cdd:TIGR02917 138 LGQLELAQKSYEQALAIDPRSLYAKLGLAQL-ALAENRFDEARALIDEVLTADPGNVDALLLK------------GDLLL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 294 KEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDF 373
Cdd:TIGR02917 205 SLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETL 284
|
250
....*....|....
gi 1046895582 374 ETVLLLEPGNKQAV 387
Cdd:TIGR02917 285 QDALKSAPEYLPAL 298
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
176-241 |
3.12e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 43.24 E-value: 3.12e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1046895582 176 AYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKdYVKVLELEPDNFEATNEL 241
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNL 65
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
202-234 |
3.59e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.87 E-value: 3.59e-05
10 20 30
....*....|....*....|....*....|...
gi 1046895582 202 KAYARRGAARFALQKLEDARKDYVKVLELEPDN 234
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
126-199 |
5.49e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.46 E-value: 5.49e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1046895582 126 VRVDSQKALVLKEKGNKYFKQGKYDEAIEcYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRS 199
Cdd:COG3063 19 LELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
128-376 |
7.79e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 45.84 E-value: 7.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 128 VDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFavaesdcNLAIALSRSYTK----- 202
Cdd:TIGR02917 392 LDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQF-------DKALAAAKKLEKkqpdn 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 203 --AYARRGAARFALQKLEDARKDYVKVLELEPDNFEATNELRKIDQALTSKENS----------HPKDIAAVIKPAE-GE 269
Cdd:TIGR02917 465 asLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAiqrfekvltiDPKNLRAILALAGlYL 544
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 270 RKANED-------------------------------QRGRQKAIAEKD-------------LGNGFFKEGKYEQAIECY 305
Cdd:TIGR02917 545 RTGNEEeavawlekaaelnpqeiepalalaqyylgkgQLKKALAILNEAadaapdspeawlmLGRAQLAAGDLNKAVSSF 624
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1046895582 306 TRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETV 376
Cdd:TIGR02917 625 KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
289-328 |
1.26e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.76 E-value: 1.26e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1046895582 289 GNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLK 328
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
292-395 |
2.32e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 41.13 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 292 FFKEGKYEQAIECYTRGIAADSTNALLPA---NRAMAYLKVQKYEEAERDCTQAILLDGSYSK---AFARRGTARTFLGK 365
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPLAPDalyWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82
|
90 100 110
....*....|....*....|....*....|
gi 1046895582 366 INEAKQDFETVLLLEPGNKQAVTELSRIKK 395
Cdd:COG1729 83 YDKARATLEELIKKYPDSEAAKEARARLAR 112
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
133-164 |
3.72e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 38.27 E-value: 3.72e-04
10 20 30
....*....|....*....|....*....|..
gi 1046895582 133 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADP 164
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
260-405 |
4.71e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 43.44 E-value: 4.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 260 AAVIKPAEGERKANEDQRGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQK---YEEAE 336
Cdd:COG3914 19 AAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQAlgrYEEAL 98
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1046895582 337 RDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIkkeLIEKGRWDD 405
Cdd:COG3914 99 ALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA---LRRLGRLEE 164
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
282-315 |
6.40e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.43 E-value: 6.40e-04
10 20 30
....*....|....*....|....*....|....
gi 1046895582 282 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTN 315
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
202-234 |
7.95e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.43 E-value: 7.95e-04
10 20 30
....*....|....*....|....*....|...
gi 1046895582 202 KAYARRGAARFALQKLEDARKDYVKVLELEPDN 234
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
282-315 |
9.95e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.02 E-value: 9.95e-04
10 20 30
....*....|....*....|....*....|....
gi 1046895582 282 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTN 315
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
210-348 |
1.47e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.23 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 210 ARFALQKLEDARKDYVKVLELEPDNFEATNELrkidqaltskenshpkdiaavikpaegerkanedqrgrqkaiaekdlG 289
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNL-----------------------------------------------G 33
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1046895582 290 NGFFKEGKYEQAIEcYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGS 348
Cdd:COG3063 34 LLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
193-337 |
1.78e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.83 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 193 AIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEPDNfeatnelrkiDQALTskenshpkdiaavikpaegerka 272
Cdd:COG4235 9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN----------ADALL----------------------- 55
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1046895582 273 nedqrgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAER 337
Cdd:COG4235 56 --------------DLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIA 106
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
321-349 |
1.90e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.24 E-value: 1.90e-03
10 20
....*....|....*....|....*....
gi 1046895582 321 NRAMAYLKVQKYEEAERDCTQAILLDGSY 349
Cdd:pfam00515 6 NLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
202-233 |
3.71e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.19 E-value: 3.71e-03
10 20 30
....*....|....*....|....*....|..
gi 1046895582 202 KAYARRGAARFALQKLEDARKDYVKVLELEPD 233
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
288-394 |
4.10e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 40.45 E-value: 4.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046895582 288 LGNGFFKEGKYEQAIECYTRGIAAD-STNALLPAnRAMAYLKVQKYEEAERDCTQAILLDG-SYSKAFARRGTARTFLGK 365
Cdd:TIGR02917 62 LGKIYLALGDYAAAEKELRKALSLGyPKNQVLPL-LARAYLLQGKFQQVLDELPGKTLLDDeGAAELLALRGLAYLGLGQ 140
|
90 100
....*....|....*....|....*....
gi 1046895582 366 INEAKQDFETVLLLEPGNKQAVTELSRIK 394
Cdd:TIGR02917 141 LELAQKSYEQALAIDPRSLYAKLGLAQLA 169
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
321-349 |
8.27e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.34 E-value: 8.27e-03
10 20
....*....|....*....|....*....
gi 1046895582 321 NRAMAYLKVQKYEEAERDCTQAILLDGSY 349
Cdd:smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| |
