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Conserved domains on  [gi|1046866189|ref|XP_017456131|]
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protein FAM193B isoform X2 [Rattus norvegicus]

Protein Classification

PTZ00449 and FAM193_C domain-containing protein( domain architecture ID 11239807)

PTZ00449 and FAM193_C domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FAM193_C pfam15914
FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 ...
769-821 1.14e-25

FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. This C-terminal region of these proteins carries the most conserved residues.


:

Pssm-ID: 464940  Cd Length: 57  Bit Score: 100.38  E-value: 1.14e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1046866189 769 DVFLPK--DLDGVEMDETDREVEYFKRFCLDSAKQTR-QKVAVNWTNFSLKKTAPS 821
Cdd:pfam15914   1 DVFLPKdiDLDDVEMDDTEREVEYFKRFCLDSAPQTRkQKVHVNWKDFSLKKKTTA 56
PHA03247 super family cl33720
large tegument protein UL36; Provisional
547-709 4.48e-04

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 4.48e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189  547 PQSHTLQAPSEPVPPWAERRDPHPPwtevrGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSSEESPKE--VPICK 624
Cdd:PHA03247  2680 PQRPRRRAARPTVGSLTSLADPPPP-----PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGpaTPGGP 2754
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189  625 QERSEPVATGGKPRKSKrqgSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPI 704
Cdd:PHA03247  2755 ARPARPPTTAGPPAPAP---PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831

                   ....*
gi 1046866189  705 QAASP 709
Cdd:PHA03247  2832 TSAQP 2836
PHA03247 super family cl33720
large tegument protein UL36; Provisional
175-239 3.49e-03

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 3.49e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1046866189  175 SDLTAPPNSPTGPAPHPASLIPSHPGSFSSASHPHLLPTTPAAPFPAQASECPMAAATATHPPGP 239
Cdd:PHA03247  2696 TSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP 2760
 
Name Accession Description Interval E-value
FAM193_C pfam15914
FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 ...
769-821 1.14e-25

FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. This C-terminal region of these proteins carries the most conserved residues.


Pssm-ID: 464940  Cd Length: 57  Bit Score: 100.38  E-value: 1.14e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1046866189 769 DVFLPK--DLDGVEMDETDREVEYFKRFCLDSAKQTR-QKVAVNWTNFSLKKTAPS 821
Cdd:pfam15914   1 DVFLPKdiDLDDVEMDDTEREVEYFKRFCLDSAPQTRkQKVHVNWKDFSLKKKTTA 56
PHA03247 PHA03247
large tegument protein UL36; Provisional
547-709 4.48e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 4.48e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189  547 PQSHTLQAPSEPVPPWAERRDPHPPwtevrGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSSEESPKE--VPICK 624
Cdd:PHA03247  2680 PQRPRRRAARPTVGSLTSLADPPPP-----PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGpaTPGGP 2754
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189  625 QERSEPVATGGKPRKSKrqgSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPI 704
Cdd:PHA03247  2755 ARPARPPTTAGPPAPAP---PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831

                   ....*
gi 1046866189  705 QAASP 709
Cdd:PHA03247  2832 TSAQP 2836
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
496-711 1.00e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 42.64  E-value: 1.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 496 ASLNMCELGMDSSGFKEGTMEAQTLTPSDLSGSSQKQPDINLDLSPLTLGSPQSHTLqAPSEPVPPWAERRDPHPPW-TE 574
Cdd:pfam17823 224 AGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRL-SPAKHMPSDTMARNPAAPMgAQ 302
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 575 VRGPPPAIPENGLVrrLNTVPNlsrviwvktPKPgKPSSEESPKEVPICKQERSEPVATGGKprkskrqgSQAKKTEASP 654
Cdd:pfam17823 303 AQGPIIQVSTDQPV--HNTAGE---------PTP-SPSNTTLEPNTPKSVASTNLAVVTTTK--------AQAKEPSASP 362
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1046866189 655 APWPPANQ----EAPSAKSQMSS--PKQPGKGP----EPAKAGSAAEPGEGSRGsrPGPIQAASPKT 711
Cdd:pfam17823 363 VPVLHTSMipevEATSPTTQPSPllPTQGAAGPgillAPEQVATEATAGTASAG--PTPRSSGDPKT 427
PHA03247 PHA03247
large tegument protein UL36; Provisional
175-239 3.49e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 3.49e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1046866189  175 SDLTAPPNSPTGPAPHPASLIPSHPGSFSSASHPHLLPTTPAAPFPAQASECPMAAATATHPPGP 239
Cdd:PHA03247  2696 TSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP 2760
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
470-767 3.50e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 40.91  E-value: 3.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 470 QELDRVSSFLSSRLQEIKSTVKDSLCASLNMCELGMDSSGFKEGTMEAqtlTPSDLSGSSQKQPDINLDLSPLTLGSPQS 549
Cdd:NF033839  235 KELDELKKQALSEIDNVNTKVEIENTVHKIFADMDAVVTKFKKGLTQD---TPKEPGNKKPSAPKPGMQPSPQPEKKEVK 311
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 550 HTLQAPSEPVPPWAERRDPHPPwTEVRGPPPAIPenglvrrlntvPNLSRVIWVKTPKPGKPSSEESPKEVPICKQERSE 629
Cdd:NF033839  312 PEPETPKPEVKPQLEKPKPEVK-PQPEKPKPEVK-----------PQLETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQ 379
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 630 PvatgGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPIQAASP 709
Cdd:NF033839  380 P----ETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKP 455
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1046866189 710 KTDKKGSSWQNWPGGARARTLEQESEQIPGPAKPQslSQGKGRSRRSRNKQEKSASSL 767
Cdd:NF033839  456 QPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQ--ADDKKPSTPNNLSKDKQPSNQ 511
 
Name Accession Description Interval E-value
FAM193_C pfam15914
FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 ...
769-821 1.14e-25

FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. This C-terminal region of these proteins carries the most conserved residues.


Pssm-ID: 464940  Cd Length: 57  Bit Score: 100.38  E-value: 1.14e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1046866189 769 DVFLPK--DLDGVEMDETDREVEYFKRFCLDSAKQTR-QKVAVNWTNFSLKKTAPS 821
Cdd:pfam15914   1 DVFLPKdiDLDDVEMDDTEREVEYFKRFCLDSAPQTRkQKVHVNWKDFSLKKKTTA 56
PHA03247 PHA03247
large tegument protein UL36; Provisional
547-709 4.48e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 4.48e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189  547 PQSHTLQAPSEPVPPWAERRDPHPPwtevrGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSSEESPKE--VPICK 624
Cdd:PHA03247  2680 PQRPRRRAARPTVGSLTSLADPPPP-----PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGpaTPGGP 2754
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189  625 QERSEPVATGGKPRKSKrqgSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPI 704
Cdd:PHA03247  2755 ARPARPPTTAGPPAPAP---PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831

                   ....*
gi 1046866189  705 QAASP 709
Cdd:PHA03247  2832 TSAQP 2836
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
496-711 1.00e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 42.64  E-value: 1.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 496 ASLNMCELGMDSSGFKEGTMEAQTLTPSDLSGSSQKQPDINLDLSPLTLGSPQSHTLqAPSEPVPPWAERRDPHPPW-TE 574
Cdd:pfam17823 224 AGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRL-SPAKHMPSDTMARNPAAPMgAQ 302
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 575 VRGPPPAIPENGLVrrLNTVPNlsrviwvktPKPgKPSSEESPKEVPICKQERSEPVATGGKprkskrqgSQAKKTEASP 654
Cdd:pfam17823 303 AQGPIIQVSTDQPV--HNTAGE---------PTP-SPSNTTLEPNTPKSVASTNLAVVTTTK--------AQAKEPSASP 362
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1046866189 655 APWPPANQ----EAPSAKSQMSS--PKQPGKGP----EPAKAGSAAEPGEGSRGsrPGPIQAASPKT 711
Cdd:pfam17823 363 VPVLHTSMipevEATSPTTQPSPllPTQGAAGPgillAPEQVATEATAGTASAG--PTPRSSGDPKT 427
PHA03378 PHA03378
EBNA-3B; Provisional
537-749 1.14e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 42.75  E-value: 1.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 537 LDLSPLTLGSPQSHTLQAPSEPVPPWAE---RRDPHPPWTEVRGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSS 613
Cdd:PHA03378  572 LQIQPLTSPTTSQLASSAPSYAQTPWPVphpSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTP 651
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 614 EESPKEVPICKQersepvATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQ--PGKGPEPAKAGSAAE 691
Cdd:PHA03378  652 HQPPQVEITPYK------PTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAapPGRAQRPAAATGRAR 725
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1046866189 692 PGEGSRGSRPGPIQAASPKTDKKGSSWQNWPGGArARTLEQESEQIPGPAKPQSLSQG 749
Cdd:PHA03378  726 PPAAAPGRARPPAAAPGRARPPAAAPGRARPPAA-APGRARPPAAAPGAPTPQPPPQA 782
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
604-787 1.24e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 604 KTPKPGKPSSEESPKEVPICKQERSEPVATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEp 683
Cdd:PRK07764  628 APAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA- 706
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 684 akAGSAAEPGEGSRGSRPGPIQAASPKTdkkgsswqnwPGGARARTLEQESEQIPGPAKPQSLSQGKGR-SRRSRNKQEK 762
Cdd:PRK07764  707 --ATPPAGQADDPAAQPPQAAQGASAPS----------PAADDPVPLPPEPDDPPDPAGAPAQPPPPPApAPAAAPAAAP 774
                         170       180
                  ....*....|....*....|....*
gi 1046866189 763 SASSLDDVFLPKDLDGVEMDETDRE 787
Cdd:PRK07764  775 PPSPPSEEEEMAEDDAPSMDDEDRR 799
PHA03247 PHA03247
large tegument protein UL36; Provisional
521-747 1.26e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 1.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189  521 TPSDLSGSSQKQPdinldlsPLTLGSPQSHTLQAP-SEPVPPWAERRDPHPPWTEVRGPPPAIPENGLVRRLNTVPNLSR 599
Cdd:PHA03247  2600 APVDDRGDPRGPA-------PPSPLPPDTHAPDPPpPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR 2672
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189  600 VIWVKTPkPGKPSSEESPKEV--------PICKQERSEPVATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQM 671
Cdd:PHA03247  2673 AAQASSP-PQRPRRRAARPTVgsltsladPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATP 2751
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1046866189  672 SSPKQPGKGPEPAKAGSAAEPGEGSRGSRPG-PIQAASPKTDKKGSSWQNWPGGARARTLEQESEQIPGPAKPQSLS 747
Cdd:PHA03247  2752 GGPARPARPPTTAGPPAPAPPAAPAAGPPRRlTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL 2828
PHA03247 PHA03247
large tegument protein UL36; Provisional
175-239 3.49e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 3.49e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1046866189  175 SDLTAPPNSPTGPAPHPASLIPSHPGSFSSASHPHLLPTTPAAPFPAQASECPMAAATATHPPGP 239
Cdd:PHA03247  2696 TSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP 2760
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
470-767 3.50e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 40.91  E-value: 3.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 470 QELDRVSSFLSSRLQEIKSTVKDSLCASLNMCELGMDSSGFKEGTMEAqtlTPSDLSGSSQKQPDINLDLSPLTLGSPQS 549
Cdd:NF033839  235 KELDELKKQALSEIDNVNTKVEIENTVHKIFADMDAVVTKFKKGLTQD---TPKEPGNKKPSAPKPGMQPSPQPEKKEVK 311
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 550 HTLQAPSEPVPPWAERRDPHPPwTEVRGPPPAIPenglvrrlntvPNLSRVIWVKTPKPGKPSSEESPKEVPICKQERSE 629
Cdd:NF033839  312 PEPETPKPEVKPQLEKPKPEVK-PQPEKPKPEVK-----------PQLETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQ 379
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 630 PvatgGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPIQAASP 709
Cdd:NF033839  380 P----ETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKP 455
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1046866189 710 KTDKKGSSWQNWPGGARARTLEQESEQIPGPAKPQslSQGKGRSRRSRNKQEKSASSL 767
Cdd:NF033839  456 QPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQ--ADDKKPSTPNNLSKDKQPSNQ 511
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
604-788 3.59e-03

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 41.00  E-value: 3.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189  604 KTPKPGKP-------SSEESPKEVPICKQERSEPVATGGKPRKskRQGSQ----AKKTEASPAPWPPANQEAPSAKSQMS 672
Cdd:PLN03237  1200 QAPKKPAPkkttkkaSESETTEETYGSSAMETENVAEVVKPKG--RAGAKkkapAAAKEKEEEDEILDLKDRLAAYNLDS 1277
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189  673 SPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPIQAASPKTDKKGSswqnwPGGARARTLEQESEQIPGPAKPQSLSQGKGR 752
Cdd:PLN03237  1278 APAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFA-----VEVSLAERLKKKGGRKPAAANKKAAKPPAAA 1352
                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1046866189  753 SRRSRNKQEKSASSLDDVFLPKDLDGVEMDETDREV 788
Cdd:PLN03237  1353 KKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKM 1388
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
632-777 4.56e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 4.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 632 ATGGKPRKSKRQGSQAKKTEASPAPW---PPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSRGS-RPGPIQAA 707
Cdd:PRK07764  597 GEGPPAPASSGPPEEAARPAAPAAPAapaAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDgWPAKAGGA 676
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 708 SPKTDKKGSSWQNWPGGARARTLEQESEQIPGPAKPQSLSQGKGRSRRSRNKQEKSASSLDDVFLPKDLD 777
Cdd:PRK07764  677 APAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPD 746
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
540-757 7.64e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.15  E-value: 7.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189  540 SPLTLGSPQSHTLQAPSEPVPPWAER----RDPHPPW----TEVRGPPPAIPENGLVRRLNTVPNLSrviwvKTPKPGKP 611
Cdd:PHA03307   174 LPLSSPEETARAPSSPPAEPPPSTPPaaasPRPPRRSspisASASSPAPAPGRSAADDAGASSSDSS-----SSESSGCG 248
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189  612 SSEESPKEVP-----ICKQERSEPVATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKA 686
Cdd:PHA03307   249 WGPENECPLPrpapiTLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSS 328
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1046866189  687 GSAAEPGEGSRGSRPGPIQAASPkTDKKGSSWQNWPGGARARtleqeseqiPGPAKPQSLSQGKGRSRRSR 757
Cdd:PHA03307   329 TSSSSESSRGAAVSPGPSPSRSP-SPSRPPPPADPSSPRKRP---------RPSRAPSSPAASAGRPTRRR 389
dnaA PRK14086
chromosomal replication initiator protein DnaA;
554-743 8.72e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 39.42  E-value: 8.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 554 APSEPVPPWAERRDPHppwtevRGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSseespkevpicKQERSEPvat 633
Cdd:PRK14086   96 APPPPHARRTSEPELP------RPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPA-----------YQQRPEP--- 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 634 GGKPRKSKRQGSQAKKTEASP-APWPPANQEAPSA----------KSQMSSPKQPGKGPEPAKAGSAAE--------PGE 694
Cdd:PRK14086  156 GAWPRAADDYGWQQQRLGFPPrAPYASPASYAPEQerdrepydagRPEYDQRRRDYDHPRPDWDRPRRDrtdrpeppPGA 235
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1046866189 695 GS--RGSRPGPIQAASPKTDKKGSswqnWPGGARARtleqeSEQIPGPAKP 743
Cdd:PRK14086  236 GHvhRGGPGPPERDDAPVVPIRPS----APGPLAAQ-----PAPAPGPGEP 277
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
625-745 9.10e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 9.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046866189 625 QERSEPVATGGKPrkSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAgSAAEPGEGSRGSRPGPI 704
Cdd:PRK07764  381 LERRLGVAGGAGA--PAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPA-PPSPAGNAPAGGAPSPP 457
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1046866189 705 QAASPKtdkkgSSWQNWPGGARARTLEQESEQIPGPAKPQS 745
Cdd:PRK07764  458 PAAAPS-----AQPAPAPAAAPEPTAAPAPAPPAAPAPAAA 493
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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