|
Name |
Accession |
Description |
Interval |
E-value |
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
1471-1718 |
5.64e-75 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
:
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 249.88 E-value: 5.64e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1471 SPPFEYFIMAMIALNTVVLMMKFYDAPYE-YELMLKCLNIVFTSMFSMECVLKIIAFGV-LNYFRDAWNVFDFVTVLGSI 1548
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQPEEpLTTVLEILDYVFTGIFTLEMLLKIIAAGFkKRYFRSPWNILDFVVVLPSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1549 TDILVTEIaNNFINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALDDD 1628
Cdd:pfam00520 81 ISLVLSSV-GSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKTWE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1629 TSINRHNNFRTFLQALMLLFRSATGEAWHEIMLSCLsnracdpnanaSECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMD 1708
Cdd:pfam00520 160 NPDNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTI-----------DGKGEFWAYIYFVSFIILGGFLLLNLFIAVIID 228
|
250
....*....|
gi 1196734998 1709 NFEYLTRDSS 1718
Cdd:pfam00520 229 NFQELTERTE 238
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
94-367 |
5.82e-67 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
:
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 226.76 E-value: 5.82e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 94 WPPFEYMILATIIANCIVLALEQHLPDgdKTPMSERLDDTEPYFIGIFCFEAGIKIIALGFVFHkgsYLRNGWNVMDFVV 173
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQP--EEPLTTVLEILDYVFTGIFTLEMLLKIIAAGFKKR---YFRSPWNILDFVV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 174 VLTGIL----ATAGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLEFYMGKF 249
Cdd:pfam00520 76 VLPSLIslvlSSVGSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 250 HKacfpnstdadpvgdfpcgkdaparlcegdtecreyWPGPNFGITNFDNILFAILTVFQCITMEGWTDILYNTNDAAGN 329
Cdd:pfam00520 156 KT-----------------------------------WENPDNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKGE 200
|
250 260 270
....*....|....*....|....*....|....*...
gi 1196734998 330 TWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVE 367
Cdd:pfam00520 201 FWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELTERTE 238
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
481-720 |
1.72e-56 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
:
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 196.72 E-value: 1.72e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 481 AQSFYWVVLCVVALNTLCVAMVHYNQPQ-RLTTALYFAEFVFLGLFLTEMSLKMYGLGP-RSYFRSSFNCFDFGVIVGSI 558
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQPEePLTTVLEILDYVFTGIFTLEMLLKIIAAGFkKRYFRSPWNILDFVVVLPSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 559 FEVVWAAIKPGtsFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFK 638
Cdd:pfam00520 81 ISLVLSSVGSL--SGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKTW 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 639 DE--TPTTNFDTFPAAILTVFQILTGEDWNAVMYHGIESQGgvskGMFSSFYFIVLTLFGNYTLLNVFLAIAVDNLANAQ 716
Cdd:pfam00520 159 ENpdNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKG----EFWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELT 234
|
....
gi 1196734998 717 ELTK 720
Cdd:pfam00520 235 ERTE 238
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
1151-1381 |
6.42e-55 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
:
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 192.10 E-value: 6.42e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1151 RYFETVILVVIALSSIALAAEDPVRTDSSRNNALKYMDYIFTGVFTFEMVIKMIDLGLLLHpgaYFRDLWNILDFIVVSG 1230
Cdd:pfam00520 2 RYFELFILLLILLNTIFLALETYFQPEEPLTTVLEILDYVFTGIFTLEMLLKIIAAGFKKR---YFRSPWNILDFVVVLP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1231 ALVAFAFSGSKGkdINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKFf 1310
Cdd:pfam00520 79 SLISLVLSSVGS--LSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKL- 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1196734998 1311 yctdeskelerdcrgqyldyeKEEVEAQPRqwkkyDFHYDNVLWALLTLFTVSTGEGWPMVLKHSVDATYE 1381
Cdd:pfam00520 156 ---------------------KTWENPDNG-----RTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKGE 200
|
|
| Ca_chan_IQ |
pfam08763 |
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular ... |
1791-1868 |
1.37e-41 |
|
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular calcium entry in response to changes in membrane potential. The isoleucine-glutamine (IQ) motif in the voltage gated calcium channel IQ domain interacts with hydrophobic pockets of Ca2+/calmodulin. The interaction regulates two self-regulatory calcium dependent feedback mechanism, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF).
:
Pssm-ID: 462591 Cd Length: 77 Bit Score: 147.74 E-value: 1.37e-41
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1196734998 1791 TSTLMALIRTALEIKLAPAGtKQHQCDAELRKEISSVWANLPQKTLDLLVPPHKPDEMTVGKVYAALMIFDFYKQNKT 1868
Cdd:pfam08763 1 TATLFALIRTSLKIKLAPAG-EMDQADAELRKIIKKIWPRLSQKTLDLLVPPPSDDEMTVGKIYAALLIQDYYRQNKA 77
|
|
| GPHH |
pfam16905 |
Voltage-dependent L-type calcium channel, IQ-associated; GPHH is a sequence motif found in ... |
1727-1780 |
1.36e-31 |
|
Voltage-dependent L-type calcium channel, IQ-associated; GPHH is a sequence motif found in this short domain on voltage-dependent L-type calcium channel proteins in eukaryotes. The domain is closely associated with the IQ-domain, pfam08763.
:
Pssm-ID: 465306 Cd Length: 54 Bit Score: 118.14 E-value: 1.36e-31
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1196734998 1727 EFIRVWAEYDPAACGRISYNDMFEMLKHMSPPLGLGKKCPARVAYKRLVRMNMP 1780
Cdd:pfam16905 1 EFVRVWAEYDPAATGRISYQDMYELLRRISPPLGFGKKCPARVAYKRLVRMNMP 54
|
|
| PHA03247 super family |
cl33720 |
large tegument protein UL36; Provisional |
1983-2307 |
5.75e-07 |
|
large tegument protein UL36; Provisional
The actual alignment was detected with superfamily member PHA03247:
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 55.33 E-value: 5.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1983 DPDGEPQPGLQSQGRAASMPRLAAETQPAPdaSPMKRSISTLAQRPHG-AHLCSAALDRLAPGQVPHHHHHRCHRRRDKK 2061
Cdd:PHA03247 2546 DDAGDPPPPLPPAAPPAAPDRSVPPPRPAP--RPSEPAVTSRARRPDApPQSARPRAPVDDRGDPRGPAPPSPLPPDTHA 2623
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2062 QKSLEKGPSLSADTDGAPSSTPGPGLA-PGEGPAGCRHERRQgRGRSQERRQPSSSSSEKQRfyscdrfgGREPPQPKPS 2140
Cdd:PHA03247 2624 PDPPPPSPSPAANEPDPHPPPTVPPPErPRDDPAPGRVSRPR-RARRLGRAAQASSPPQRPR--------RRAARPTVGS 2694
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2141 VSSHPTSPTAGLEPAPAPQGGGSVTGSPLLSTS-------------------GASTPGRGGRRQLPQTPLTPRPSitykT 2201
Cdd:PHA03247 2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGPAAarqaspalpaapappavpaGPATPGGPARPARPPTTAGPPAP----A 2770
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2202 ANSSPVhfGGAQSSLSAfsPGRLSRGLSEHNALLQRDPLSQPLAPSSRIGSDPylgqrlDSEASAHALPEDTLTFEEAMA 2281
Cdd:PHA03247 2771 PPAAPA--AGPPRRLTR--PAVASLSESRESLPSPWDPADPPAAVLAPAAALP------PAASPAGPLPPPTSAQPTAPP 2840
|
330 340
....*....|....*....|....*.
gi 1196734998 2282 SNSGRSSRTSYVSSLTSQSHPLRRVP 2307
Cdd:PHA03247 2841 PPPGPPPPSLPLGGSVAPGGDVRRRP 2866
|
|
| PHA03169 super family |
cl27451 |
hypothetical protein; Provisional |
877-1124 |
2.26e-04 |
|
hypothetical protein; Provisional
The actual alignment was detected with superfamily member PHA03169:
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 46.12 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 877 KAPTTLPSASEQAQDQAGAQRADRMDGAEpgaRGEHARPRH-SRSKEATGGQEARGERSRGpeggrrhhrmhrhGPDPSK 955
Cdd:PHA03169 44 AKPAPPAPTTSGPQVRAVAEQGHRQTESD---TETAEESRHgEKEERGQGGPSGSGSESVG-------------SPTPSP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 956 DKDKDGPVAKGERRARHRGPRAGPKEAESGEEPGrRHRARHKAPPTQEAMEKEGEGPEGDQEVRSRQLKDPPcdleargv 1035
Cdd:PHA03169 108 SGSAEELASGLSPENTSGSSPESPASHSPPPSPP-SHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEP-------- 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1036 mgvDPVHALPstclQKVEEQPEDADNQRNVTRMGSQPSDPStavhapvtltDPAGETtavPSGNVDLESQAEGKKEVEAD 1115
Cdd:PHA03169 179 ---EPPTSEP----EPDSPGPPQSETPTSSPPPQSPPDEPG----------EPQSPT---PQQAPSPNTQQAVEHEDEPT 238
|
....*....
gi 1196734998 1116 DMLRSGPRP 1124
Cdd:PHA03169 239 EPEREGPPF 247
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
1471-1718 |
5.64e-75 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 249.88 E-value: 5.64e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1471 SPPFEYFIMAMIALNTVVLMMKFYDAPYE-YELMLKCLNIVFTSMFSMECVLKIIAFGV-LNYFRDAWNVFDFVTVLGSI 1548
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQPEEpLTTVLEILDYVFTGIFTLEMLLKIIAAGFkKRYFRSPWNILDFVVVLPSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1549 TDILVTEIaNNFINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALDDD 1628
Cdd:pfam00520 81 ISLVLSSV-GSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKTWE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1629 TSINRHNNFRTFLQALMLLFRSATGEAWHEIMLSCLsnracdpnanaSECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMD 1708
Cdd:pfam00520 160 NPDNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTI-----------DGKGEFWAYIYFVSFIILGGFLLLNLFIAVIID 228
|
250
....*....|
gi 1196734998 1709 NFEYLTRDSS 1718
Cdd:pfam00520 229 NFQELTERTE 238
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
94-367 |
5.82e-67 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 226.76 E-value: 5.82e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 94 WPPFEYMILATIIANCIVLALEQHLPDgdKTPMSERLDDTEPYFIGIFCFEAGIKIIALGFVFHkgsYLRNGWNVMDFVV 173
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQP--EEPLTTVLEILDYVFTGIFTLEMLLKIIAAGFKKR---YFRSPWNILDFVV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 174 VLTGIL----ATAGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLEFYMGKF 249
Cdd:pfam00520 76 VLPSLIslvlSSVGSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 250 HKacfpnstdadpvgdfpcgkdaparlcegdtecreyWPGPNFGITNFDNILFAILTVFQCITMEGWTDILYNTNDAAGN 329
Cdd:pfam00520 156 KT-----------------------------------WENPDNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKGE 200
|
250 260 270
....*....|....*....|....*....|....*...
gi 1196734998 330 TWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVE 367
Cdd:pfam00520 201 FWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELTERTE 238
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
481-720 |
1.72e-56 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 196.72 E-value: 1.72e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 481 AQSFYWVVLCVVALNTLCVAMVHYNQPQ-RLTTALYFAEFVFLGLFLTEMSLKMYGLGP-RSYFRSSFNCFDFGVIVGSI 558
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQPEePLTTVLEILDYVFTGIFTLEMLLKIIAAGFkKRYFRSPWNILDFVVVLPSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 559 FEVVWAAIKPGtsFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFK 638
Cdd:pfam00520 81 ISLVLSSVGSL--SGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKTW 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 639 DE--TPTTNFDTFPAAILTVFQILTGEDWNAVMYHGIESQGgvskGMFSSFYFIVLTLFGNYTLLNVFLAIAVDNLANAQ 716
Cdd:pfam00520 159 ENpdNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKG----EFWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELT 234
|
....
gi 1196734998 717 ELTK 720
Cdd:pfam00520 235 ERTE 238
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
1151-1381 |
6.42e-55 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 192.10 E-value: 6.42e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1151 RYFETVILVVIALSSIALAAEDPVRTDSSRNNALKYMDYIFTGVFTFEMVIKMIDLGLLLHpgaYFRDLWNILDFIVVSG 1230
Cdd:pfam00520 2 RYFELFILLLILLNTIFLALETYFQPEEPLTTVLEILDYVFTGIFTLEMLLKIIAAGFKKR---YFRSPWNILDFVVVLP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1231 ALVAFAFSGSKGkdINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKFf 1310
Cdd:pfam00520 79 SLISLVLSSVGS--LSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKL- 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1196734998 1311 yctdeskelerdcrgqyldyeKEEVEAQPRqwkkyDFHYDNVLWALLTLFTVSTGEGWPMVLKHSVDATYE 1381
Cdd:pfam00520 156 ---------------------KTWENPDNG-----RTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKGE 200
|
|
| Ca_chan_IQ |
pfam08763 |
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular ... |
1791-1868 |
1.37e-41 |
|
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular calcium entry in response to changes in membrane potential. The isoleucine-glutamine (IQ) motif in the voltage gated calcium channel IQ domain interacts with hydrophobic pockets of Ca2+/calmodulin. The interaction regulates two self-regulatory calcium dependent feedback mechanism, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF).
Pssm-ID: 462591 Cd Length: 77 Bit Score: 147.74 E-value: 1.37e-41
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1196734998 1791 TSTLMALIRTALEIKLAPAGtKQHQCDAELRKEISSVWANLPQKTLDLLVPPHKPDEMTVGKVYAALMIFDFYKQNKT 1868
Cdd:pfam08763 1 TATLFALIRTSLKIKLAPAG-EMDQADAELRKIIKKIWPRLSQKTLDLLVPPPSDDEMTVGKIYAALLIQDYYRQNKA 77
|
|
| GPHH |
pfam16905 |
Voltage-dependent L-type calcium channel, IQ-associated; GPHH is a sequence motif found in ... |
1727-1780 |
1.36e-31 |
|
Voltage-dependent L-type calcium channel, IQ-associated; GPHH is a sequence motif found in this short domain on voltage-dependent L-type calcium channel proteins in eukaryotes. The domain is closely associated with the IQ-domain, pfam08763.
Pssm-ID: 465306 Cd Length: 54 Bit Score: 118.14 E-value: 1.36e-31
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1196734998 1727 EFIRVWAEYDPAACGRISYNDMFEMLKHMSPPLGLGKKCPARVAYKRLVRMNMP 1780
Cdd:pfam16905 1 EFVRVWAEYDPAATGRISYQDMYELLRRISPPLGFGKKCPARVAYKRLVRMNMP 54
|
|
| Ca_chan_IQ |
smart01062 |
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular ... |
1846-1876 |
2.61e-10 |
|
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular calcium entry in response to changes in membrane potential. The isoleucine-glutamine (IQ) motif in the voltage gated calcium channel IQ domain interacts with hydrophobic pockets of Ca2+/calmodulin. The interaction regulates two self-regulatory calcium dependent feedback mechanism, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF).
Pssm-ID: 198130 Cd Length: 31 Bit Score: 57.23 E-value: 2.61e-10
10 20 30
....*....|....*....|....*....|.
gi 1196734998 1846 DEMTVGKVYAALMIFDFYKQNKTTRDQIHQA 1876
Cdd:smart01062 1 DELTVGKIYAAMLIQDYFRQFKSRKEQELLG 31
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1983-2307 |
5.75e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 55.33 E-value: 5.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1983 DPDGEPQPGLQSQGRAASMPRLAAETQPAPdaSPMKRSISTLAQRPHG-AHLCSAALDRLAPGQVPHHHHHRCHRRRDKK 2061
Cdd:PHA03247 2546 DDAGDPPPPLPPAAPPAAPDRSVPPPRPAP--RPSEPAVTSRARRPDApPQSARPRAPVDDRGDPRGPAPPSPLPPDTHA 2623
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2062 QKSLEKGPSLSADTDGAPSSTPGPGLA-PGEGPAGCRHERRQgRGRSQERRQPSSSSSEKQRfyscdrfgGREPPQPKPS 2140
Cdd:PHA03247 2624 PDPPPPSPSPAANEPDPHPPPTVPPPErPRDDPAPGRVSRPR-RARRLGRAAQASSPPQRPR--------RRAARPTVGS 2694
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2141 VSSHPTSPTAGLEPAPAPQGGGSVTGSPLLSTS-------------------GASTPGRGGRRQLPQTPLTPRPSitykT 2201
Cdd:PHA03247 2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGPAAarqaspalpaapappavpaGPATPGGPARPARPPTTAGPPAP----A 2770
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2202 ANSSPVhfGGAQSSLSAfsPGRLSRGLSEHNALLQRDPLSQPLAPSSRIGSDPylgqrlDSEASAHALPEDTLTFEEAMA 2281
Cdd:PHA03247 2771 PPAAPA--AGPPRRLTR--PAVASLSESRESLPSPWDPADPPAAVLAPAAALP------PAASPAGPLPPPTSAQPTAPP 2840
|
330 340
....*....|....*....|....*.
gi 1196734998 2282 SNSGRSSRTSYVSSLTSQSHPLRRVP 2307
Cdd:PHA03247 2841 PPPGPPPPSLPLGGSVAPGGDVRRRP 2866
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
877-1124 |
2.26e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 46.12 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 877 KAPTTLPSASEQAQDQAGAQRADRMDGAEpgaRGEHARPRH-SRSKEATGGQEARGERSRGpeggrrhhrmhrhGPDPSK 955
Cdd:PHA03169 44 AKPAPPAPTTSGPQVRAVAEQGHRQTESD---TETAEESRHgEKEERGQGGPSGSGSESVG-------------SPTPSP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 956 DKDKDGPVAKGERRARHRGPRAGPKEAESGEEPGrRHRARHKAPPTQEAMEKEGEGPEGDQEVRSRQLKDPPcdleargv 1035
Cdd:PHA03169 108 SGSAEELASGLSPENTSGSSPESPASHSPPPSPP-SHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEP-------- 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1036 mgvDPVHALPstclQKVEEQPEDADNQRNVTRMGSQPSDPStavhapvtltDPAGETtavPSGNVDLESQAEGKKEVEAD 1115
Cdd:PHA03169 179 ---EPPTSEP----EPDSPGPPQSETPTSSPPPQSPPDEPG----------EPQSPT---PQQAPSPNTQQAVEHEDEPT 238
|
....*....
gi 1196734998 1116 DMLRSGPRP 1124
Cdd:PHA03169 239 EPEREGPPF 247
|
|
| AF-4 |
pfam05110 |
AF-4 proto-oncoprotein N-terminal region; This family consists of AF4 (Proto-oncogene AF4) and ... |
1983-2148 |
2.83e-03 |
|
AF-4 proto-oncoprotein N-terminal region; This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homolog Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila.
Pssm-ID: 461550 [Multi-domain] Cd Length: 514 Bit Score: 42.80 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1983 DPDGEPQPGLQSQGRAASMPRLAAETQPAPDASPMKRSISTLaQRPHGAH--------LCSAALDRLAPGQvphhhhHRC 2054
Cdd:pfam05110 95 DKTSGLPPSFHTSSHSQPMGPPSSSSPSVSSSQSQKKSQART-EPAHGGHsssgsqssQRSQGQSRSKGGQ------ESH 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2055 HRRRDKKQKSLEKGPSLSADTDGAPSSTPG-PGLAPGEGPAGCRHERRQGrgrsQERRQPSSSSSEKQRFYS---CDR-F 2129
Cdd:pfam05110 168 SSSHHKRQERREDLFSCASLSHSLEELSPLlSSLSSPVKPLSPSHSRQHT----GSKAQNSSDHHGKEYSHSkspRDSeA 243
|
170
....*....|....*....
gi 1196734998 2130 GGREPPQPKPSVSSHPTSP 2148
Cdd:pfam05110 244 GSHGPESPSTSLLASSSQL 262
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
1471-1718 |
5.64e-75 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 249.88 E-value: 5.64e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1471 SPPFEYFIMAMIALNTVVLMMKFYDAPYE-YELMLKCLNIVFTSMFSMECVLKIIAFGV-LNYFRDAWNVFDFVTVLGSI 1548
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQPEEpLTTVLEILDYVFTGIFTLEMLLKIIAAGFkKRYFRSPWNILDFVVVLPSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1549 TDILVTEIaNNFINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALDDD 1628
Cdd:pfam00520 81 ISLVLSSV-GSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKTWE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1629 TSINRHNNFRTFLQALMLLFRSATGEAWHEIMLSCLsnracdpnanaSECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMD 1708
Cdd:pfam00520 160 NPDNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTI-----------DGKGEFWAYIYFVSFIILGGFLLLNLFIAVIID 228
|
250
....*....|
gi 1196734998 1709 NFEYLTRDSS 1718
Cdd:pfam00520 229 NFQELTERTE 238
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
94-367 |
5.82e-67 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 226.76 E-value: 5.82e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 94 WPPFEYMILATIIANCIVLALEQHLPDgdKTPMSERLDDTEPYFIGIFCFEAGIKIIALGFVFHkgsYLRNGWNVMDFVV 173
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQP--EEPLTTVLEILDYVFTGIFTLEMLLKIIAAGFKKR---YFRSPWNILDFVV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 174 VLTGIL----ATAGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLEFYMGKF 249
Cdd:pfam00520 76 VLPSLIslvlSSVGSLSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 250 HKacfpnstdadpvgdfpcgkdaparlcegdtecreyWPGPNFGITNFDNILFAILTVFQCITMEGWTDILYNTNDAAGN 329
Cdd:pfam00520 156 KT-----------------------------------WENPDNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKGE 200
|
250 260 270
....*....|....*....|....*....|....*...
gi 1196734998 330 TWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVE 367
Cdd:pfam00520 201 FWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELTERTE 238
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
481-720 |
1.72e-56 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 196.72 E-value: 1.72e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 481 AQSFYWVVLCVVALNTLCVAMVHYNQPQ-RLTTALYFAEFVFLGLFLTEMSLKMYGLGP-RSYFRSSFNCFDFGVIVGSI 558
Cdd:pfam00520 1 SRYFELFILLLILLNTIFLALETYFQPEePLTTVLEILDYVFTGIFTLEMLLKIIAAGFkKRYFRSPWNILDFVVVLPSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 559 FEVVWAAIKPGtsFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFK 638
Cdd:pfam00520 81 ISLVLSSVGSL--SGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKLKTW 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 639 DE--TPTTNFDTFPAAILTVFQILTGEDWNAVMYHGIESQGgvskGMFSSFYFIVLTLFGNYTLLNVFLAIAVDNLANAQ 716
Cdd:pfam00520 159 ENpdNGRTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKG----EFWAYIYFVSFIILGGFLLLNLFIAVIIDNFQELT 234
|
....
gi 1196734998 717 ELTK 720
Cdd:pfam00520 235 ERTE 238
|
|
| Ion_trans |
pfam00520 |
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This ... |
1151-1381 |
6.42e-55 |
|
Ion transport protein; This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.
Pssm-ID: 459842 [Multi-domain] Cd Length: 238 Bit Score: 192.10 E-value: 6.42e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1151 RYFETVILVVIALSSIALAAEDPVRTDSSRNNALKYMDYIFTGVFTFEMVIKMIDLGLLLHpgaYFRDLWNILDFIVVSG 1230
Cdd:pfam00520 2 RYFELFILLLILLNTIFLALETYFQPEEPLTTVLEILDYVFTGIFTLEMLLKIIAAGFKKR---YFRSPWNILDFVVVLP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1231 ALVAFAFSGSKGkdINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKFf 1310
Cdd:pfam00520 79 SLISLVLSSVGS--LSGLRVLRLLRLLRLLRLIRRLEGLRTLVNSLIRSLKSLGNLLLLLLLFLFIFAIIGYQLFGGKL- 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1196734998 1311 yctdeskelerdcrgqyldyeKEEVEAQPRqwkkyDFHYDNVLWALLTLFTVSTGEGWPMVLKHSVDATYE 1381
Cdd:pfam00520 156 ---------------------KTWENPDNG-----RTNFDNFPNAFLWLFQTMTTEGWGDIMYDTIDGKGE 200
|
|
| Ca_chan_IQ |
pfam08763 |
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular ... |
1791-1868 |
1.37e-41 |
|
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular calcium entry in response to changes in membrane potential. The isoleucine-glutamine (IQ) motif in the voltage gated calcium channel IQ domain interacts with hydrophobic pockets of Ca2+/calmodulin. The interaction regulates two self-regulatory calcium dependent feedback mechanism, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF).
Pssm-ID: 462591 Cd Length: 77 Bit Score: 147.74 E-value: 1.37e-41
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1196734998 1791 TSTLMALIRTALEIKLAPAGtKQHQCDAELRKEISSVWANLPQKTLDLLVPPHKPDEMTVGKVYAALMIFDFYKQNKT 1868
Cdd:pfam08763 1 TATLFALIRTSLKIKLAPAG-EMDQADAELRKIIKKIWPRLSQKTLDLLVPPPSDDEMTVGKIYAALLIQDYYRQNKA 77
|
|
| GPHH |
pfam16905 |
Voltage-dependent L-type calcium channel, IQ-associated; GPHH is a sequence motif found in ... |
1727-1780 |
1.36e-31 |
|
Voltage-dependent L-type calcium channel, IQ-associated; GPHH is a sequence motif found in this short domain on voltage-dependent L-type calcium channel proteins in eukaryotes. The domain is closely associated with the IQ-domain, pfam08763.
Pssm-ID: 465306 Cd Length: 54 Bit Score: 118.14 E-value: 1.36e-31
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1196734998 1727 EFIRVWAEYDPAACGRISYNDMFEMLKHMSPPLGLGKKCPARVAYKRLVRMNMP 1780
Cdd:pfam16905 1 EFVRVWAEYDPAATGRISYQDMYELLRRISPPLGFGKKCPARVAYKRLVRMNMP 54
|
|
| PKD_channel |
pfam08016 |
Polycystin cation channel; This family contains the cation channel region from group II of ... |
1494-1711 |
5.45e-11 |
|
Polycystin cation channel; This family contains the cation channel region from group II of Transient receptor potential (TRP) channels, the TRPP subfamily, including PKD1, PKD2, PKD2L and mucolipin proteins.
Pssm-ID: 462341 [Multi-domain] Cd Length: 225 Bit Score: 64.61 E-value: 5.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1494 YDAPYEYELMLkCLNI--VFTSMFSMECVLKIIAFGvLNYFRDAWNVFDFVTVLGSIT--------DILVTEIANNFI-- 1561
Cdd:pfam08016 2 YVTNRSLFILL-CEIVfvVFFLYFVVEEILKIRKHR-PSYLRSVWNLLDLAIVILSVVlivlniyrDFLADRLIKSVEas 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1562 ---NLSFLRLFRAA----------------RLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGN 1622
Cdd:pfam08016 80 pvtFIDFDRVAQLDnlyriilaflvfltwlKLFKVLRFNKTMSLFTKTLSRAWKDLAGFALMFVIFFFAYAQFGYLLFGT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1623 ialdddtsinRHNNFRTFLQALMLLFRsatgeawheIMLSCLSNRACDpnanasECGSDFAYFYFVSFIFLCSFLMLNLF 1702
Cdd:pfam08016 160 ----------QAPNFSNFVKSILTLFR---------TILGDFGYNEIF------SGNRVLGPLLFLTFVFLVIFILLNLF 214
|
....*....
gi 1196734998 1703 VAVIMDNFE 1711
Cdd:pfam08016 215 LAIINDSYV 223
|
|
| Ca_chan_IQ |
smart01062 |
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular ... |
1846-1876 |
2.61e-10 |
|
Voltage gated calcium channel IQ domain; Voltage gated calcium channels control cellular calcium entry in response to changes in membrane potential. The isoleucine-glutamine (IQ) motif in the voltage gated calcium channel IQ domain interacts with hydrophobic pockets of Ca2+/calmodulin. The interaction regulates two self-regulatory calcium dependent feedback mechanism, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF).
Pssm-ID: 198130 Cd Length: 31 Bit Score: 57.23 E-value: 2.61e-10
10 20 30
....*....|....*....|....*....|.
gi 1196734998 1846 DEMTVGKVYAALMIFDFYKQNKTTRDQIHQA 1876
Cdd:smart01062 1 DELTVGKIYAAMLIQDYFRQFKSRKEQELLG 31
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1983-2307 |
5.75e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 55.33 E-value: 5.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1983 DPDGEPQPGLQSQGRAASMPRLAAETQPAPdaSPMKRSISTLAQRPHG-AHLCSAALDRLAPGQVPHHHHHRCHRRRDKK 2061
Cdd:PHA03247 2546 DDAGDPPPPLPPAAPPAAPDRSVPPPRPAP--RPSEPAVTSRARRPDApPQSARPRAPVDDRGDPRGPAPPSPLPPDTHA 2623
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2062 QKSLEKGPSLSADTDGAPSSTPGPGLA-PGEGPAGCRHERRQgRGRSQERRQPSSSSSEKQRfyscdrfgGREPPQPKPS 2140
Cdd:PHA03247 2624 PDPPPPSPSPAANEPDPHPPPTVPPPErPRDDPAPGRVSRPR-RARRLGRAAQASSPPQRPR--------RRAARPTVGS 2694
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2141 VSSHPTSPTAGLEPAPAPQGGGSVTGSPLLSTS-------------------GASTPGRGGRRQLPQTPLTPRPSitykT 2201
Cdd:PHA03247 2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGPAAarqaspalpaapappavpaGPATPGGPARPARPPTTAGPPAP----A 2770
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2202 ANSSPVhfGGAQSSLSAfsPGRLSRGLSEHNALLQRDPLSQPLAPSSRIGSDPylgqrlDSEASAHALPEDTLTFEEAMA 2281
Cdd:PHA03247 2771 PPAAPA--AGPPRRLTR--PAVASLSESRESLPSPWDPADPPAAVLAPAAALP------PAASPAGPLPPPTSAQPTAPP 2840
|
330 340
....*....|....*....|....*.
gi 1196734998 2282 SNSGRSSRTSYVSSLTSQSHPLRRVP 2307
Cdd:PHA03247 2841 PPPGPPPPSLPLGGSVAPGGDVRRRP 2866
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1952-2209 |
2.19e-06 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 53.25 E-value: 2.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1952 APLERGHSAEIPVGQRGtLAVDVQMQSAALRDPD--GEPQPGLQSQGRAASMPRL--AAETQPAPDASPM-------KRS 2020
Cdd:PHA03307 155 AGASPAAVASDAASSRQ-AALPLSSPEETARAPSspPAEPPPSTPPAAASPRPPRrsSPISASASSPAPApgrsaadDAG 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2021 ISTLAQRPHGAHLCSAALDRLAPGQVPHHHHHRCHRRRDK--KQKSLEKGPSLSADTDGAPSSTPGPGlAPGEGPA--GC 2096
Cdd:PHA03307 234 ASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASgwNGPSSRPGPASSSSSPRERSPSPSPS-SPGSGPApsSP 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2097 RHERRQGRGRSQERRQPSSSS-SEKQRFYSCDRFGGREPPQPKPSVSSHPTSPTAGLEPAPAPQGGGSVTGSPLLSTSGA 2175
Cdd:PHA03307 313 RASSSSSSSRESSSSSTSSSSeSSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARA 392
|
250 260 270
....*....|....*....|....*....|....
gi 1196734998 2176 STPGRGGRRQLPQTPLTPRPSITYKTANSSPVHF 2209
Cdd:PHA03307 393 AVAGRARRRDATGRFPAGRPRPSPLDAGAASGAF 426
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1957-2323 |
6.55e-06 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 51.71 E-value: 6.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1957 GHSAEIPV--GQRGTLAVDVQMQSAALRDPDGEPQPG-----LQSQGRAASMPRL--AAETQPAPDASPMKRSISTLAQR 2027
Cdd:PHA03307 38 GSQGQLVSdsAELAAVTVVAGAAACDRFEPPTGPPPGpgteaPANESRSTPTWSLstLAPASPAREGSPTPPGPSSPDPP 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2028 PhgahlcsAALDRLAPGQVPHHHHHrchrrrdkkqkslEKGPSLSADTDGAPSSTPGPGLAPGEGPAGCRHERRQGRGRS 2107
Cdd:PHA03307 118 P-------PTPPPASPPPSPAPDLS-------------EMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLS 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2108 Q-ERRQPSSSSSEKQRFYSCDRFGGREPPQPKPSVSSHPTSPtaglepaPAPQGGGSVTGSPLLSTSGASTPGRGGRRQL 2186
Cdd:PHA03307 178 SpEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASS-------PAPAPGRSAADDAGASSSDSSSSESSGCGWG 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2187 PQTpLTPRPSITYKTANSSPVHFGGAQSSLSAFSPGRLSRGLSEHNALLQRDPLSQPLAPSSRIGSDPYLGQR---LDSE 2263
Cdd:PHA03307 251 PEN-ECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRessSSST 329
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1196734998 2264 ASAHALPEDTLTFEEAMASNSGRSSRTSYVS--SLTSQSHPLRRVPNGYHCTLGLSTGGRAR 2323
Cdd:PHA03307 330 SSSSESSRGAAVSPGPSPSRSPSPSRPPPPAdpSSPRKRPRPSRAPSSPAASAGRPTRRRAR 391
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1978-2276 |
8.72e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 51.48 E-value: 8.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1978 SAALRDPDGEPQPGL---QSQGRAASMPRLAAETQPAPDASPMKRSISTL--AQRPHGAHLCSAALDRLAPGQVPHHHhh 2052
Cdd:PHA03247 2769 PAPPAAPAAGPPRRLtrpAVASLSESRESLPSPWDPADPPAAVLAPAAALppAASPAGPLPPPTSAQPTAPPPPPGPP-- 2846
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2053 rchrrrdkkQKSLEKGPSLSAdtdGAPSSTPGPGLAPGEGPAGCRHERRQGRGRSQERRQPSS---------------SS 2117
Cdd:PHA03247 2847 ---------PPSLPLGGSVAP---GGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESfalppdqperppqpqAP 2914
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2118 SEKQRFYSCDRFGGREPPQPKPSVSSHPTSPTAGLEPAPAPQGGgsvTGSPLLstsGASTPGRGG--RRQLPQtpltPRP 2195
Cdd:PHA03247 2915 PPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGA---VPQPWL---GALVPGRVAvpRFRVPQ----PAP 2984
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2196 SITYKTANSSPVHfggaQSSLSAFSPGRLSRGLSEhnallQRDP----LSQPLAPS---------SRIGSDPylgQRLDS 2262
Cdd:PHA03247 2985 SREAPASSTPPLT----GHSLSRVSSWASSLALHE-----ETDPppvsLKQTLWPPddtedsdadSLFDSDS---ERSDL 3052
|
330
....*....|....
gi 1196734998 2263 EASAHALPEDTLTF 2276
Cdd:PHA03247 3053 EALDPLPPEPHDPF 3066
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
877-1124 |
2.26e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 46.12 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 877 KAPTTLPSASEQAQDQAGAQRADRMDGAEpgaRGEHARPRH-SRSKEATGGQEARGERSRGpeggrrhhrmhrhGPDPSK 955
Cdd:PHA03169 44 AKPAPPAPTTSGPQVRAVAEQGHRQTESD---TETAEESRHgEKEERGQGGPSGSGSESVG-------------SPTPSP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 956 DKDKDGPVAKGERRARHRGPRAGPKEAESGEEPGrRHRARHKAPPTQEAMEKEGEGPEGDQEVRSRQLKDPPcdleargv 1035
Cdd:PHA03169 108 SGSAEELASGLSPENTSGSSPESPASHSPPPSPP-SHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEP-------- 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1036 mgvDPVHALPstclQKVEEQPEDADNQRNVTRMGSQPSDPStavhapvtltDPAGETtavPSGNVDLESQAEGKKEVEAD 1115
Cdd:PHA03169 179 ---EPPTSEP----EPDSPGPPQSETPTSSPPPQSPPDEPG----------EPQSPT---PQQAPSPNTQQAVEHEDEPT 238
|
....*....
gi 1196734998 1116 DMLRSGPRP 1124
Cdd:PHA03169 239 EPEREGPPF 247
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
843-1022 |
2.75e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 46.05 E-value: 2.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 843 SRDGPRGPTGGKAQSEATEAMDPPRRHHRHRDRDKAPTTLPSASEQAQDQAGAQRADRMDGAEPGARGEHARPRHSRSKE 922
Cdd:PRK12678 79 RAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARA 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 923 ATGGQEARGERSRGPEggrrhhrmhrhgpdpskdkDKDGPVAKGERRARHRGPRAGPKEAESGEEPGRRHRARHKApptq 1002
Cdd:PRK12678 159 DAAERTEEEERDERRR-------------------RGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRR---- 215
|
170 180
....*....|....*....|
gi 1196734998 1003 eamEKEGEGPEGDQEVRSRQ 1022
Cdd:PRK12678 216 ---EERGRRDGGDRRGRRRR 232
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1978-2305 |
1.35e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 44.01 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1978 SAALRDPDGEPqpglqsqGRAASMPRLAAETQPAPDASPMKRSISTLAQRPHGAhlcsAALDRLAPGQVPHHHHHRCHRR 2057
Cdd:PHA03307 755 DALFSNPSLVP-------AKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGR----LRRSGPAADAASRTASKRKSRS 823
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2058 RDKKQKSLEKGPSLSAdtdGAPSSTPGPGLAPGEGPAGcrherRQGRGRSQERRQPSSSSSEKQRfyscdrfggREPPQP 2137
Cdd:PHA03307 824 HTPDGGSESSGPARPP---GAAARPPPARSSESSKSKP-----AAAGGRARGKNGRRRPRPPEPR---------ARPGAA 886
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2138 KPSVSSHPTSPTAGLEPAPAPQGGGSVTGSPLlstsGASTPGRGGRRQLPQTPLTPRPSityktansspvhfggaQSSLS 2217
Cdd:PHA03307 887 APPKAAAAAPPAGAPAPRPRPAPRVKLGPMPP----GGPDPRGGFRRVPPGDLHTPAPS----------------AAALA 946
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2218 AFSPGRLSRGLSEHnallqrdplsqPLAPssrigsdpylgqrldsEASAHAlpedtLTFE-EAMAS-----NSGRSSRTS 2291
Cdd:PHA03307 947 AYCPPEVVAELVDH-----------PLFP----------------EPWRPA-----LAFDpEALAEiaarcGGPPPRSGS 994
|
330
....*....|....
gi 1196734998 2292 YVSSLTSqSHPLRR 2305
Cdd:PHA03307 995 AFGPLRA-SGPLRR 1007
|
|
| AF-4 |
pfam05110 |
AF-4 proto-oncoprotein N-terminal region; This family consists of AF4 (Proto-oncogene AF4) and ... |
1983-2148 |
2.83e-03 |
|
AF-4 proto-oncoprotein N-terminal region; This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homolog Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila.
Pssm-ID: 461550 [Multi-domain] Cd Length: 514 Bit Score: 42.80 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 1983 DPDGEPQPGLQSQGRAASMPRLAAETQPAPDASPMKRSISTLaQRPHGAH--------LCSAALDRLAPGQvphhhhHRC 2054
Cdd:pfam05110 95 DKTSGLPPSFHTSSHSQPMGPPSSSSPSVSSSQSQKKSQART-EPAHGGHsssgsqssQRSQGQSRSKGGQ------ESH 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2055 HRRRDKKQKSLEKGPSLSADTDGAPSSTPG-PGLAPGEGPAGCRHERRQGrgrsQERRQPSSSSSEKQRFYS---CDR-F 2129
Cdd:pfam05110 168 SSSHHKRQERREDLFSCASLSHSLEELSPLlSSLSSPVKPLSPSHSRQHT----GSKAQNSSDHHGKEYSHSkspRDSeA 243
|
170
....*....|....*....
gi 1196734998 2130 GGREPPQPKPSVSSHPTSP 2148
Cdd:pfam05110 244 GSHGPESPSTSLLASSSQL 262
|
|
| Hamartin |
pfam04388 |
Hamartin protein; This family includes the hamartin protein which is thought to function as a ... |
2059-2254 |
3.61e-03 |
|
Hamartin protein; This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking.
Pssm-ID: 461287 [Multi-domain] Cd Length: 730 Bit Score: 42.74 E-value: 3.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2059 DKKQKSLEKGpSLSADTDgaPSSTPGPGLAPGEGPAGCRH---ERRQGRGRSQERRQPSSSSSEkqrfyscdRFGGREPP 2135
Cdd:pfam04388 259 DPKEASCEEG-YSSSAAD--PTASPYTDQQSSYGSSTSTPsstPRLQLSSSSGTSPPYLSPPSI--------RLKTDSFP 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 2136 QPKPSVSSH-PTSPTA-GLEPAPAPQGGGSvtgSPLLSTSGASTPGRGGRRQLPQTPLT-PRPSITYKTANSSPVHfgGA 2212
Cdd:pfam04388 328 LWSPSSVCGmTTPPTSpGMVPTTPSELSPS---SSHLSSRGSSPPEAAGEATPETTPAKdSPYLKQPPPLSDSHVH--RA 402
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1196734998 2213 QSSLSA-FSPGRLSRGLSEHNALLQRdplSQPLAPSSRIGSDP 2254
Cdd:pfam04388 403 LPASSQpSSPPRKDGRSQSSFPPLSK---QAPTNPNSRGLLEP 442
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
822-1001 |
7.54e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.70 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 822 TSRHLRPDMKTHLDRPLVVEHSRDGPRGPTGGKAQSEATEAMDPPRRHHRHRDRDKAPTTLPSASEQAQDQAGAQradrm 901
Cdd:PHA03307 197 TPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWE----- 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 902 dgaepGARGEHARPRHSRSKEATGGQEARGE----RSRGPEGGRRHHRMHRHGPDPSKDKDKDGPVAKGER-------RA 970
Cdd:PHA03307 272 -----ASGWNGPSSRPGPASSSSSPRERSPSpspsSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRgaavspgPS 346
|
170 180 190
....*....|....*....|....*....|..
gi 1196734998 971 RHRGPRAG-PKEAESGEEPGRRHRARHKAPPT 1001
Cdd:PHA03307 347 PSRSPSPSrPPPPADPSSPRKRPRPSRAPSSP 378
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
843-1022 |
8.27e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 41.43 E-value: 8.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 843 SRDGPRGPTGGKAQSEATEAMDPPRRHHRHRDRDKAPTTLPSASEQAQDQAGAQRADRMD-------GAEPGARGEHARP 915
Cdd:PRK12678 81 ARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGaarkageGGEQPATEARADA 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 916 RHSRSKEATGGQEARGERS-RGPEGGRRHHRMHRHGPDPSKDKDKDGPVAKGERRARHRGPRAGPKEAESGEEPGRRHRA 994
Cdd:PRK12678 161 AERTEEEERDERRRRGDREdRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARG 240
|
170 180
....*....|....*....|....*...
gi 1196734998 995 RHKAPPTQEAMEKEGEGPEGDQEVRSRQ 1022
Cdd:PRK12678 241 DDNREDRGDRDGDDGEGRGGRRGRRFRD 268
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
852-1022 |
9.56e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 41.04 E-value: 9.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 852 GGKAQSEATEAMDPPRRHHRHRDRDKAPTTLPSASEQAQDQAGAQRADrmdgAEPGARGEHARPRHSRSKEATGGQEARG 931
Cdd:PRK12678 62 GAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAAR----AAAAAAAEAASAPEAAQARERRERGEAA 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1196734998 932 ERSRGPEGGRRHHRMHRHGPDPSKDKDKDGPVAKGERRaRHRGPRAGPKEAESGEEPGRRHRARHKAPPTQEAMEKEGEG 1011
Cdd:PRK12678 138 RRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR-GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRRE 216
|
170
....*....|.
gi 1196734998 1012 PEGDQEVRSRQ 1022
Cdd:PRK12678 217 ERGRRDGGDRR 227
|
|
| |
