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Conserved domains on  [gi|1958788628|ref|XP_038934733|]
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lymphocyte antigen 6H isoform X2 [Rattus norvegicus]

Protein Classification

LU domain-containing protein( domain architecture ID 10439911)

LU domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TFP_LU_ECD_Ly6H cd23549
extracellular domain (ECD) found in lymphocyte antigen 6H (Ly-6H) and similar proteins; Ly-6H ...
 26-112 2.10e-41

extracellular domain (ECD) found in lymphocyte antigen 6H (Ly-6H) and similar proteins; Ly-6H may act as a modulator of nicotinic acetylcholine receptors (nAChRs) activity. In vitro it inhibits alpha-3:beta-4-containing nAChRs maximum response. Ly-6H may play a role in the intracellular trafficking of alpha-7-containing nAChRs and may inhibit their expression at the cell surface. It seems to inhibit alpha-7/CHRNA7 signaling in hippocampal neurons. Ly-6H contains an extracellular domain (ECD) which belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


:

Pssm-ID: 467079  Cd Length: 88  Bit Score: 132.57  E-value: 2.10e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958788628  26 LWCQDCTL-ANSSHCAPKQCQPTDTVCASVRITDPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCC 104
Cdd:cd23549     1 LWCQDCTLtTNSSNCTPKPCQPSDTVCVSVRITDPSSSRKDHSVNKMCATSCDFTKRHFFSDYLMGFINSGILIVDVRCC 80


                  ....*...
gi 1958788628 105 EKDLCNGA 112
Cdd:cd23549    81 NKDLCNGP 88
 
Name Accession Description Interval E-value
TFP_LU_ECD_Ly6H cd23549
extracellular domain (ECD) found in lymphocyte antigen 6H (Ly-6H) and similar proteins; Ly-6H ...
 26-112 2.10e-41

extracellular domain (ECD) found in lymphocyte antigen 6H (Ly-6H) and similar proteins; Ly-6H may act as a modulator of nicotinic acetylcholine receptors (nAChRs) activity. In vitro it inhibits alpha-3:beta-4-containing nAChRs maximum response. Ly-6H may play a role in the intracellular trafficking of alpha-7-containing nAChRs and may inhibit their expression at the cell surface. It seems to inhibit alpha-7/CHRNA7 signaling in hippocampal neurons. Ly-6H contains an extracellular domain (ECD) which belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


Pssm-ID: 467079  Cd Length: 88  Bit Score: 132.57  E-value: 2.10e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958788628  26 LWCQDCTL-ANSSHCAPKQCQPTDTVCASVRITDPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCC 104
Cdd:cd23549     1 LWCQDCTLtTNSSNCTPKPCQPSDTVCVSVRITDPSSSRKDHSVNKMCATSCDFTKRHFFSDYLMGFINSGILIVDVRCC 80


                  ....*...
gi 1958788628 105 EKDLCNGA 112
Cdd:cd23549    81 NKDLCNGP 88
UPAR_LY6 pfam00021
u-PAR/Ly-6 domain; This extracellular disulphide bond rich domain is related to pfam00087.
 28-110 2.78e-12

u-PAR/Ly-6 domain; This extracellular disulphide bond rich domain is related to pfam00087.


Pssm-ID: 394978  Cd Length: 77  Bit Score: 58.32  E-value: 2.78e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958788628  28 CQDCTLANSSHCAPK-QCQPTDTVCASVRITDPSSSRKDHSVNKMCA-SSCDfvkrhffsDYLMGFINSGILKVDVDCCE 105
Cdd:pfam00021   1 CYSCLGVSNEDCLSEvTCPLSDGQCVTTTLELPEGNLRGTVVSKGCArSSCP--------RLLSDFINGGIISVSESCCQ 72


                  ....*
gi 1958788628 106 KDLCN 110
Cdd:pfam00021  73 SDLCN 77
LU smart00134
Ly-6 antigen / uPA receptor -like domain; Three-fold repeated domain in urokinase-type ...
 26-110 9.95e-03

Ly-6 antigen / uPA receptor -like domain; Three-fold repeated domain in urokinase-type plasminogen activator receptor; occurs singly in other GPI-linked cell-surface glycoproteins (Ly-6 family, CD59, thymocyte B cell antigen, Sgp-2). Topology of these domains is similar to that of snake venom neurotoxins.


Pssm-ID: 214530  Cd Length: 85  Bit Score: 33.28  E-value: 9.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958788628   26 LWCQDCTLANSSHC-APKQCQPTDTVCASVRITDPSSSRkDHSVNKMCASSCDFVKRHFFsdylmgFINSGILKVDVDCC 104
Cdd:smart00134   1 LQCYSCTGNPDSSCsSEEECRSPDDVCLTVVAEVISDSR-GSVVYKGCATSPICPGSHGY------EINLTIAFLKVSCC 73


                   ....*.
gi 1958788628  105 EKDLCN 110
Cdd:smart00134  74 QTDLCN 79
 
Name Accession Description Interval E-value
TFP_LU_ECD_Ly6H cd23549
extracellular domain (ECD) found in lymphocyte antigen 6H (Ly-6H) and similar proteins; Ly-6H ...
 26-112 2.10e-41

extracellular domain (ECD) found in lymphocyte antigen 6H (Ly-6H) and similar proteins; Ly-6H may act as a modulator of nicotinic acetylcholine receptors (nAChRs) activity. In vitro it inhibits alpha-3:beta-4-containing nAChRs maximum response. Ly-6H may play a role in the intracellular trafficking of alpha-7-containing nAChRs and may inhibit their expression at the cell surface. It seems to inhibit alpha-7/CHRNA7 signaling in hippocampal neurons. Ly-6H contains an extracellular domain (ECD) which belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


Pssm-ID: 467079  Cd Length: 88  Bit Score: 132.57  E-value: 2.10e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958788628  26 LWCQDCTL-ANSSHCAPKQCQPTDTVCASVRITDPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCC 104
Cdd:cd23549     1 LWCQDCTLtTNSSNCTPKPCQPSDTVCVSVRITDPSSSRKDHSVNKMCATSCDFTKRHFFSDYLMGFINSGILIVDVRCC 80


                  ....*...
gi 1958788628 105 EKDLCNGA 112
Cdd:cd23549    81 NKDLCNGP 88
UPAR_LY6 pfam00021
u-PAR/Ly-6 domain; This extracellular disulphide bond rich domain is related to pfam00087.
 28-110 2.78e-12

u-PAR/Ly-6 domain; This extracellular disulphide bond rich domain is related to pfam00087.


Pssm-ID: 394978  Cd Length: 77  Bit Score: 58.32  E-value: 2.78e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958788628  28 CQDCTLANSSHCAPK-QCQPTDTVCASVRITDPSSSRKDHSVNKMCA-SSCDfvkrhffsDYLMGFINSGILKVDVDCCE 105
Cdd:pfam00021   1 CYSCLGVSNEDCLSEvTCPLSDGQCVTTTLELPEGNLRGTVVSKGCArSSCP--------RLLSDFINGGIISVSESCCQ 72


                  ....*
gi 1958788628 106 KDLCN 110
Cdd:pfam00021  73 SDLCN 77
TFP_LU_ECD_Ly6E cd23543
extracellular domain (ECD) found in lymphocyte antigen 6E (Ly-6E) and similar proteins; Ly-6E ...
 24-110 4.11e-05

extracellular domain (ECD) found in lymphocyte antigen 6E (Ly-6E) and similar proteins; Ly-6E (also called retinoic acid-induced gene E protein (RIG-E), or stem cell antigen 2 (SCA-2), or thymic shared antigen 1 (TSA-1)) is a GPI-anchored cell surface protein that regulates T-lymphocytes proliferation, differentiation, and activation. It restricts the entry of human coronaviruses, including SARS-CoV, MERS-CoV and SARS-CoV-2, by interfering with spike protein-mediated membrane fusion. It plays an essential role in placenta formation by acting as the main receptor for syncytin-A (SynA). It may also act as a modulator of nicotinic acetylcholine receptors (nAChRs) activity. Ly-6E contains an extracellular domain (ECD) which belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


Pssm-ID: 467073  Cd Length: 78  Bit Score: 39.64  E-value: 4.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958788628  24 HGLWCQDCTLANS-SHCA-PKQCQPTDTVCASVRITDPSSSRKDHSVNKMCASSCDFVKrhffsdylmgfINSGILKVDV 101
Cdd:cd23543     1 HSLYCYTCENQSSnWNCLkPTKCSDNDKYCVTTVASGGTGSSSGVRITKKCSPKCPETN-----------VNIGIASVST 69


                  ....*....
gi 1958788628 102 DCCEKDLCN 110
Cdd:cd23543    70 SCCQSSLCN 78
TFP_LU_ECD_Ly6L cd23551
extracellular domain (ECD) found in lymphocyte antigen 6L (Ly-6L) and similar proteins; Ly-6L ...
 26-113 3.00e-04

extracellular domain (ECD) found in lymphocyte antigen 6L (Ly-6L) and similar proteins; Ly-6L (also called lymphocyte antigen 6 complex locus protein L) contains an extracellular domain (ECD) which belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


Pssm-ID: 467081  Cd Length: 86  Bit Score: 37.38  E-value: 3.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958788628  26 LWCQDCTLANS-SHCAPKQCQPTDTVCAS--VRITDPSSSRKDhsVNKMCASSCDFVKRHFFSDYLMGFINSGILKvdvd 102
Cdd:cd23551     2 LKCYQCFKVSSdEDCKPDQCAPSEIVCISneVVLYVGTKVRVL--ISKRCAPRCPNTNSRCEWSPGTQVIGSITRT---- 75

                          90
                  ....*....|.
gi 1958788628 103 CCEKDLCNGAS 113
Cdd:cd23551    76 CCSQSLCNRAP 86
TFP_LU_ECD_GPIHBP1 cd23575
extracellular domain (ECD) found in glycosylphosphatidylinositol-anchored high density ...
 24-115 1.51e-03

extracellular domain (ECD) found in glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1 (GPI-HBP1) and similar proteins; GPI-HBP1 (also called GPI-anchored HDL-binding protein 1, or high density lipoprotein-binding protein 1) is an endothelial cell transporter for lipoprotein lipase. It mediates the transport of lipoprotein lipase LPL from the basolateral to the apical surface of endothelial cells in capillaries and anchors LPL on the surface of endothelial cells in the lumen of blood capillaries. GPI-HBP1 protects LPL against loss of activity, and against ANGPTL4-mediated unfolding. Thereby, it plays an important role in lipolytic processing of chylomicrons by LPL, triglyceride metabolism and lipid homeostasis. GPI-HBP1 binds chylomicrons and phospholipid particles that contain APOA5. It also binds high-density lipoprotein (HDL) and plays a role in the uptake of lipids from HDL. GPI-HBP1 contains an extracellular domain (ECD), which belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


Pssm-ID: 467105  Cd Length: 83  Bit Score: 35.39  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958788628  24 HGLWCQDCTLA-NSSHCAPKQ-CQPTDTVCASVRITDPSSSRKDHSVNKMCASSCDFVKRhffsdylmgfiNSGILKVDV 101
Cdd:cd23575     1 HSLKCYTCVSAhSNSDCLTETnCSSSDTYCKTLVASASGGSGSLTTITKWCASSCTPSTR-----------TVEGTKVTV 69

                          90
                  ....*....|....
gi 1958788628 102 DCCEKDLCNGASAA 115
Cdd:cd23575    70 SCCQTDLCNVSGAQ 83
TFP_LU_ECD_Ly6D cd23542
extracellular domain (ECD) found in lymphocyte antigen 6D (Ly-6D) and similar proteins; Ly-6D ...
 21-113 2.08e-03

extracellular domain (ECD) found in lymphocyte antigen 6D (Ly-6D) and similar proteins; Ly-6D (also called E48 antigen) is a GPI-anchored molecule apparently involved in keratinocyte cell-cell adhesion. It may act as a specification marker at earliest stage specification of lymphocytes between B- and T-cell development. Ly-6D contains an extracellular domain (ECD) which belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


Pssm-ID: 467072  Cd Length: 79  Bit Score: 35.08  E-value: 2.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958788628  21 SPAHGLWCQDCTlaNSSHC-APKQCQPTDTVCASVRITDPSssrkDHSVNKMCASSCDFVKRhffsdylmgFINSGILKV 99
Cdd:cd23542     1 GPANALQCHVCN--SSSNCtNPVNCEGSERYCKTTTVVQPS----GNLVKKGCAETCPPSTS---------RQQVGSGIS 65

                          90
                  ....*....|....
gi 1958788628 100 DVDCCEKDLCNGAS 113
Cdd:cd23542    66 SVTCCQGDLCNSKL 79
TFP_LU_ECD_Ly6A_like cd23541
extracellular domain (ECD) found in mouse Ly-6A like lymphocyte antigens and similar proteins; ...
 25-110 2.12e-03

extracellular domain (ECD) found in mouse Ly-6A like lymphocyte antigens and similar proteins; The family includes mouse Ly-6 lymphocyte antigens, such as Ly-6A/Ly-6E, Ly-6B, Ly-6C1/6C2, Ly-6F, and Ly-6I/Ly-6M. Ly-6A/Ly-6E (also called stem cell antigen 1/SCA-1, or T-cell-activating protein/TAP) and Ly-6C are involved in T-cell activation. Members in this family contain an extracellular domain (ECD) which belongs to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold).


Pssm-ID: 467071  Cd Length: 83  Bit Score: 35.00  E-value: 2.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958788628  25 GLWCQDCT-LANSSHCAPKQCQPTDTVCASVRITDPSSSRKDHSVNKMCASSCDfvKRHFFSDYLMGFInsgiLKVDVDC 103
Cdd:cd23541     2 GLRCYQCLgVPLETSCPSVTCSYPDGVCVSQEVETIVGSQRVKLKNKFCLPFCP--KNLYFLEEILGTT----VNVKTSC 75


                  ....*..
gi 1958788628 104 CEKDLCN 110
Cdd:cd23541    76 CKEDLCN 82
LU smart00134
Ly-6 antigen / uPA receptor -like domain; Three-fold repeated domain in urokinase-type ...
 26-110 9.95e-03

Ly-6 antigen / uPA receptor -like domain; Three-fold repeated domain in urokinase-type plasminogen activator receptor; occurs singly in other GPI-linked cell-surface glycoproteins (Ly-6 family, CD59, thymocyte B cell antigen, Sgp-2). Topology of these domains is similar to that of snake venom neurotoxins.


Pssm-ID: 214530  Cd Length: 85  Bit Score: 33.28  E-value: 9.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958788628   26 LWCQDCTLANSSHC-APKQCQPTDTVCASVRITDPSSSRkDHSVNKMCASSCDFVKRHFFsdylmgFINSGILKVDVDCC 104
Cdd:smart00134   1 LQCYSCTGNPDSSCsSEEECRSPDDVCLTVVAEVISDSR-GSVVYKGCATSPICPGSHGY------EINLTIAFLKVSCC 73


                   ....*.
gi 1958788628  105 EKDLCN 110
Cdd:smart00134  74 QTDLCN 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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