NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958789625|ref|XP_038935141|]
View 

sperm-associated antigen 1 isoform X1 [Rattus norvegicus]

Protein Classification

RNA-polymerase II-associated C-terminal domain-containing protein( domain architecture ID 13518948)

RNA-polymerase II-associated C-terminal domain-containing protein with tetratricopeptide repeats (TPRs), similar to human sperm-associated antigen 1 (SPAG1)

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 770-861 1.16e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


:

Pssm-ID: 464012  Cd Length: 91  Bit Score: 92.73  E-value: 1.16e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 770 PRNAYEFGQVLSTIsaRKDEEACAQLLVFTAPQDLPVLLSNKLEGDMLLLIMQSLKSHLVAK-DPSLVCKHLLYLSKAER 848
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 1958789625 849 FEMMLALTSKDQK 861
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
218-336 2.98e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 82.36  E-value: 2.98e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 218 GKGNEAFYSGDYEEAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKF 296
Cdd:COG0457    47 NLGLAYLRLGRYEEALADYEQALELDPDdAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY 126

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1958789625 297 LEAVDDLRKVLQAEPDNDLAKKTLSEVERELKNSEPASEL 336
Cdd:COG0457   127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALEL 166
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
601-713 6.71e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.49  E-value: 6.71e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 601 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLE 680
Cdd:COG0457    38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1958789625 681 LAQKGLENCRERVADPSQVVLLSPDSSEAARHL 713
Cdd:COG0457   118 LALLELGRYDEAIEAYERALELDPDDADALYNL 150
3a0801s09 super family cl36792
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 432-569 2.18e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00990:

Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 64.23  E-value: 2.18e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 432 LKSRGNELFRGGQFAEAAVQYSGAIaQLEPTgsenadelSILYSNRAACYLKEGNCRGCIQDCDRALELQPFAVKPLLRR 511
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAI-ECKPD--------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1958789625 512 AMAYETLEQYRSAYVDyITVLKIDCRIQLASdSVNRITRILTELDGPKWRERLPPIPA 569
Cdd:TIGR00990 201 ANAYDGLGKYADALLD-LTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPE 256
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 770-861 1.16e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 92.73  E-value: 1.16e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 770 PRNAYEFGQVLSTIsaRKDEEACAQLLVFTAPQDLPVLLSNKLEGDMLLLIMQSLKSHLVAK-DPSLVCKHLLYLSKAER 848
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 1958789625 849 FEMMLALTSKDQK 861
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
218-336 2.98e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 82.36  E-value: 2.98e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 218 GKGNEAFYSGDYEEAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKF 296
Cdd:COG0457    47 NLGLAYLRLGRYEEALADYEQALELDPDdAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY 126

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1958789625 297 LEAVDDLRKVLQAEPDNDLAKKTLSEVERELKNSEPASEL 336
Cdd:COG0457   127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALEL 166
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 141-303 1.45e-16

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 84.27  E-value: 1.45e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 141 RGGKETSSKSKTAKKRiprdyaEWDKFDVEKECSKIDEDYKEKTVINNKAHLSKIETKID---TAGLTEKEKNFLANREK 217
Cdd:TIGR00990  58 KGQQQRESKPKISKKE------RRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDessVANLSEEERKKYAAKLK 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 218 GKGNEAFYSGDYEEAVMYYTRSLSALPTATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFL 297
Cdd:TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211


                  ....*.
gi 1958789625 298 EAVDDL 303
Cdd:TIGR00990 212 DALLDL 217
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
601-713 6.71e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.49  E-value: 6.71e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 601 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLE 680
Cdd:COG0457    38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1958789625 681 LAQKGLENCRERVADPSQVVLLSPDSSEAARHL 713
Cdd:COG0457   118 LALLELGRYDEAIEAYERALELDPDDADALYNL 150
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 432-569 2.18e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 64.23  E-value: 2.18e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 432 LKSRGNELFRGGQFAEAAVQYSGAIaQLEPTgsenadelSILYSNRAACYLKEGNCRGCIQDCDRALELQPFAVKPLLRR 511
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAI-ECKPD--------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1958789625 512 AMAYETLEQYRSAYVDyITVLKIDCRIQLASdSVNRITRILTELDGPKWRERLPPIPA 569
Cdd:TIGR00990 201 ANAYDGLGKYADALLD-LTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPE 256
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
421-569 4.37e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 60.70  E-value: 4.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 421 EERRAADSPGDLKSRGNELFRGGQFAEAAVQYSGAIAqLEPtgsenadELSILYSNRAACYLKEGNCRGCIQDCDRALEL 500
Cdd:COG4785    65 RALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALE-LDP-------DLAEAYNNRGLAYLLLGDYDAALEDFDRALEL 136

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958789625 501 QPFAVKPLLRRAMAYETLEQYRSAYVDYITVLKIDCRIQLASDSVNRITRiltELDGPKWRERLPPIPA 569
Cdd:COG4785   137 DPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER---KLDPEKALALLLEDWA 202
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 219-288 5.07e-10

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 62.11  E-value: 5.07e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958789625 219 KGNEAFYSGDYEEAVMYYTRSLSALP-TATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRAT 288
Cdd:PLN03088    8 KAKEAFVDDDFALAVDLYTQAIDLDPnNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 431-603 2.02e-08

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 57.10  E-value: 2.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 431 DLKSRGNELFRGGQFAEAAVQYSGAIAqLEPTGSEnadelsiLYSNRAACYLKEGNCRGCIQDCDRALELQPFAVKPLLR 510
Cdd:PLN03088    4 DLEDKAKEAFVDDDFALAVDLYTQAID-LDPNNAE-------LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 511 RAMAYETLEQYRSAYVdyitvlKIDCRIQLASDSvNRITRILTELDGPKWRERLPPIPAVPASEPLRVWHPAAEtpdqdp 590
Cdd:PLN03088   76 KGTACMKLEEYQTAKA------ALEKGASLAPGD-SRFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVE------ 142

                         170
                  ....*....|...
gi 1958789625 591 cPNSCTPTITDEK 603
Cdd:PLN03088  143 -EADATPVVPPSK 154
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 569-695 7.30e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 56.15  E-value: 7.30e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 569 AVPASEPLRVWHPAAETPDQDPCPN-SCTPTITDE---KMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKAcAIYTN 644
Cdd:TIGR00990  87 KTEEKKSTAPKNAPVEPADELPEIDeSSVANLSEEerkKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-VYYSN 165

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958789625 645 RALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKGLENCRERVAD 695
Cdd:TIGR00990 166 RAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216
TPR_1 pfam00515
Tetratricopeptide repeat;
641-672 1.11e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 45.49  E-value: 1.11e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1958789625 641 IYTNRALCYLKLGQFEEAKLDCDKALQIDSKN 672
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 641-672 6.97e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.59  E-value: 6.97e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1958789625  641 IYTNRALCYLKLGQFEEAKLDCDKALQIDSKN 672
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
246-279 1.33e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.79  E-value: 1.33e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1958789625 246 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGN 279
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 246-279 4.54e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.28  E-value: 4.54e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1958789625  246 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGN 279
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 435-708 2.11e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.95  E-value: 2.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 435 RGNELFRGGQFAEAAVQYSGAIaQLEPtgsENADelsiLYSNRAACYLKEGNCRGCIQDCDRALELQPFAVKPLLRRAMA 514
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEAL-ELDP---ETVE----AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 515 YETLEQYRSAYVDYITVLKIDcriQLASDSVNRITRILTELDgpKWRErlppipAVPASEPLrvwhpAAETPDQDpcpns 594
Cdd:COG2956    86 YLKAGLLDRAEELLEKLLELD---PDDAEALRLLAEIYEQEG--DWEK------AIEVLERL-----LKLGPENA----- 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 595 ctptitdekmfQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVK 674
Cdd:COG2956   145 -----------HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLP 213

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1958789625 675 ASYRLELAQKGLENCRERVADPSQVVLLSPDSSE 708
Cdd:COG2956   214 ALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 618-787 2.41e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 44.39  E-value: 2.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 618 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKGLENCRERVADPS 697
Cdd:PLN03088   15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 698 QVVLLSPDSSEAARHLDTKNDTAPpsrererrrieiQEVDDSSDEEPERPAEASAVEEGWSAERAGKIEVCKPRNAYEFG 777
Cdd:PLN03088   95 KGASLAPGDSRFTKLIKECDEKIA------------EEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKPKYRHEFY 162

                         170
                  ....*....|....
gi 1958789625 778 Q----VLSTISARK 787
Cdd:PLN03088  163 QkpeeVVVTVFAKG 176
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 227-502 1.17e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.76  E-value: 1.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 227 GDYEEAVMYYTRSLSALPTAT-AYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRK 305
Cdd:TIGR02917 173 NRFDEARALIDEVLTADPGNVdALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 306 VLQAEPDNDLAKKTLSEVERELKNSEPASElqtkgkrmVIEEVENSGDEggkgDEDDHEDDGVDMAAMGNIQKK---LMV 382
Cdd:TIGR02917 253 LLKKAPNSPLAHYLKALVDFQKKNYEDARE--------TLQDALKSAPE----YLPALLLAGASEYQLGNLEQAyqyLNQ 320

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 383 RSQGGRRSRRARTPMPGAEQQEGQPETGTASTSDnhdlEERRAADSPGDLKSRGNELFRGGQFAEAAvQYSGAIAQLEPt 462
Cdd:TIGR02917 321 ILKYAPNSHQARRLLASIQLRLGRVDEAIATLSP----ALGLDPDDPAALSLLGEAYLALGDFEKAA-EYLAKATELDP- 394

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1958789625 463 gsENADelsiLYSNRAACYLKEGNCRGCIQDCDRALELQP 502
Cdd:TIGR02917 395 --ENAA----ARTQLGISKLSQGDPSEAIADLETAAQLDP 428
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 474-502 2.08e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 2.08e-03
                           10        20
                   ....*....|....*....|....*....
gi 1958789625  474 YSNRAACYLKEGNCRGCIQDCDRALELQP 502
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 770-861 1.16e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 92.73  E-value: 1.16e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 770 PRNAYEFGQVLSTIsaRKDEEACAQLLVFTAPQDLPVLLSNKLEGDMLLLIMQSLKSHLVAK-DPSLVCKHLLYLSKAER 848
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 1958789625 849 FEMMLALTSKDQK 861
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
218-336 2.98e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 82.36  E-value: 2.98e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 218 GKGNEAFYSGDYEEAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKF 296
Cdd:COG0457    47 NLGLAYLRLGRYEEALADYEQALELDPDdAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY 126

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1958789625 297 LEAVDDLRKVLQAEPDNDLAKKTLSEVERELKNSEPASEL 336
Cdd:COG0457   127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALEL 166
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
227-333 5.94e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.21  E-value: 5.94e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 227 GDYEEAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRK 305
Cdd:COG0457    22 GRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDK 101

                          90       100
                  ....*....|....*....|....*...
gi 1958789625 306 VLQAEPDNDLAKKTLSEVERELKNSEPA 333
Cdd:COG0457   102 ALELDPDDAEALYNLGLALLELGRYDEA 129
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 141-303 1.45e-16

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 84.27  E-value: 1.45e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 141 RGGKETSSKSKTAKKRiprdyaEWDKFDVEKECSKIDEDYKEKTVINNKAHLSKIETKID---TAGLTEKEKNFLANREK 217
Cdd:TIGR00990  58 KGQQQRESKPKISKKE------RRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDessVANLSEEERKKYAAKLK 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 218 GKGNEAFYSGDYEEAVMYYTRSLSALPTATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFL 297
Cdd:TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211


                  ....*.
gi 1958789625 298 EAVDDL 303
Cdd:TIGR00990 212 DALLDL 217
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
195-338 4.93e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 75.34  E-value: 4.93e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 195 IETKIDTAGLTEKEKNFLANRekgkGNEAFYSGDYEEAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKAL 273
Cdd:COG4785    59 AAERIDRALALPDLAQLYYER----GVAYDSLGDYDLAIADFDQALELDPDlAEAYNNRGLAYLLLGDYDAALEDFDRAL 134

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958789625 274 ELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVERELKNSEPASELQT 338
Cdd:COG4785   135 ELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLE 199
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 220-316 4.98e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 76.19  E-value: 4.98e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 220 GNEAFYSGDYEEAVMYYTRSLSALP-TATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLE 298
Cdd:COG3914   119 GNLLLALGRLEEALAALRRALALNPdFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198

                          90
                  ....*....|....*...
gi 1958789625 299 AVDDLRKVLQAEPDNDLA 316
Cdd:COG3914   199 AIAAYRRALELDPDNADA 216
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 211-313 1.13e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.03  E-value: 1.13e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 211 FLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATT 289
Cdd:COG3914    76 LLAALLELAALLLQALGRYEEALALYRRALALNPDnAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA 155

                          90       100
                  ....*....|....*....|....
gi 1958789625 290 YKHQNKFLEAVDDLRKVLQAEPDN 313
Cdd:COG3914   156 LRRLGRLEEAIAALRRALELDPDN 179
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 213-343 2.01e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 68.29  E-value: 2.01e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 213 ANREKGKGNEAFYSGDYEEAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYK 291
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1958789625 292 HQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVERELKNSEPASELQTKGKRM 343
Cdd:COG4783    84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
227-339 9.13e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.88  E-value: 9.13e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 227 GDYEEAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRK 305
Cdd:COG0457    90 GRYEEALEDYDKALELDPDdAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1958789625 306 VLQAEPDNDLAKKTLSEVERELKNSEPASELQTK 339
Cdd:COG0457   170 LEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 219-313 2.17e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 65.21  E-value: 2.17e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 219 KGNEAFYSGDYEEAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFL 297
Cdd:COG4783    44 LGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123

                          90
                  ....*....|....*.
gi 1958789625 298 EAVDDLRKVLQAEPDN 313
Cdd:COG4783   124 EAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 220-314 2.48e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 64.64  E-value: 2.48e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 220 GNEAFYSGDYEEAVMYYTRSLSALP-TATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLE 298
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALRLDPdNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103

                          90
                  ....*....|....*.
gi 1958789625 299 AVDDLRKVLQAEPDND 314
Cdd:COG4235   104 AIAAWQKLLALLPADA 119
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
192-316 4.33e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 66.48  E-value: 4.33e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 192 LSKIETKIDTAGLTEKEKNFLANREKGKGNEAFYS-----GDYEEAVMYYTRSLSALPTATAYNNRAQAEIKLQRWSSAL 266
Cdd:COG4785    14 LAAAAASKAAILLAALLFAAVLALAIALADLALALaaaalAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAI 93

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1958789625 267 EDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLA 316
Cdd:COG4785    94 ADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
246-339 5.61e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.57  E-value: 5.61e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 246 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVER 325
Cdd:COG0457     8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                          90
                  ....*....|....
gi 1958789625 326 ELKNSEPASELQTK 339
Cdd:COG0457    88 ALGRYEEALEDYDK 101
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 223-311 9.99e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 63.83  E-value: 9.99e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 223 AFYSGDYEEAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVD 301
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143

                          90
                  ....*....|
gi 1958789625 302 DLRKVLQAEP 311
Cdd:COG5010   144 ALQRALGTSP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 220-336 1.40e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 65.91  E-value: 1.40e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 220 GNEAFYSGDYEEAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLE 298
Cdd:COG2956   151 AELYLEQGDYDEAIEALEKALKLDPDcARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1958789625 299 AVDDLRKVLQAEPDNDlAKKTLSEVERELKNSEPASEL 336
Cdd:COG2956   231 ALELLRKALELDPSDD-LLLALADLLERKEGLEAALAL 267
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
227-312 1.48e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 61.34  E-value: 1.48e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 227 GDYEEAVMYYTRSLSALP-TATAYNNRAQAEIKLQRWSSALEdCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRK 305
Cdd:COG3063     6 GDLEEAEEYYEKALELDPdNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                  ....*..
gi 1958789625 306 VLQAEPD 312
Cdd:COG3063    85 ALELDPS 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
601-713 6.71e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.49  E-value: 6.71e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 601 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLE 680
Cdd:COG0457    38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1958789625 681 LAQKGLENCRERVADPSQVVLLSPDSSEAARHL 713
Cdd:COG0457   118 LALLELGRYDEAIEAYERALELDPDDADALYNL 150
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 226-336 1.78e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.82  E-value: 1.78e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 226 SGDYEEAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLR 304
Cdd:COG2956   123 EGDWEKAIEVLERLLKLGPEnAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALE 202

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1958789625 305 KVLQAEPDNDLAKKTLSEVERELKNSEPASEL 336
Cdd:COG2956   203 RALEQDPDYLPALPRLAELYEKLGDPEEALEL 234
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 432-569 2.18e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 64.23  E-value: 2.18e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 432 LKSRGNELFRGGQFAEAAVQYSGAIaQLEPTgsenadelSILYSNRAACYLKEGNCRGCIQDCDRALELQPFAVKPLLRR 511
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAI-ECKPD--------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1958789625 512 AMAYETLEQYRSAYVDyITVLKIDCRIQLASdSVNRITRILTELDGPKWRERLPPIPA 569
Cdd:TIGR00990 201 ANAYDGLGKYADALLD-LTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPE 256
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
601-713 3.06e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.56  E-value: 3.06e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 601 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLE 680
Cdd:COG0457     4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1958789625 681 LAQKGLENCRERVADPSQVVLLSPDSSEAARHL 713
Cdd:COG0457    84 LALQALGRYEEALEDYDKALELDPDDAEALYNL 116
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
421-569 4.37e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 60.70  E-value: 4.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 421 EERRAADSPGDLKSRGNELFRGGQFAEAAVQYSGAIAqLEPtgsenadELSILYSNRAACYLKEGNCRGCIQDCDRALEL 500
Cdd:COG4785    65 RALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALE-LDP-------DLAEAYNNRGLAYLLLGDYDAALEDFDRALEL 136

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958789625 501 QPFAVKPLLRRAMAYETLEQYRSAYVDYITVLKIDCRIQLASDSVNRITRiltELDGPKWRERLPPIPA 569
Cdd:COG4785   137 DPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER---KLDPEKALALLLEDWA 202
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 219-288 5.07e-10

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 62.11  E-value: 5.07e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958789625 219 KGNEAFYSGDYEEAVMYYTRSLSALP-TATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRAT 288
Cdd:PLN03088    8 KAKEAFVDDDFALAVDLYTQAIDLDPnNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 231-333 1.69e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 56.55  E-value: 1.69e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 231 EAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQA 309
Cdd:COG4235     1 EAIARLRQALAANPNdAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100
                  ....*....|....*....|....
gi 1958789625 310 EPDNDLAKKTLSEVERELKNSEPA 333
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEA 104
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 227-336 3.44e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 58.97  E-value: 3.44e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 227 GDYEEAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRK 305
Cdd:COG2956    56 GEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLER 135

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1958789625 306 VLQAEPDNDLAKKTLSEVERELKNSEPASEL 336
Cdd:COG2956   136 LLKLGPENAHAYCELAELYLEQGDYDEAIEA 166
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
596-713 3.52e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 58.00  E-value: 3.52e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 596 TPTITDEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKA 675
Cdd:COG4785    64 DRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1958789625 676 SYRLELAQKGLENCRERVADPSQVVLLSPDSSEAARHL 713
Cdd:COG4785   144 YLNRGIALYYLGRYELAIADLEKALELDPNDPERALWL 181
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 227-336 4.37e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 58.59  E-value: 4.37e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 227 GDYEEAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRK 305
Cdd:COG2956    90 GLLDRAEELLEKLLELDPDdAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1958789625 306 VLQAEPDNDLAKKTLSEVERELKNSEPASEL 336
Cdd:COG2956   170 ALKLDPDCARALLLLAELYLEQGDYEEAIAA 200
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
432-695 9.43e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.94  E-value: 9.43e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 432 LKSRGNELFRGGQFAEAAVQYSGAIAqLEPtgsenadELSILYSNRAACYLKEGNCRGCIQDCDRALELQPFAVKPLLRR 511
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALE-LDP-------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 512 AMAYETLEQYRSAYVDYITVLKIDcriqlasdsvnritrilteldgpkwrerlppipavpaseplrvwhpaaetPDQdpc 591
Cdd:COG0457    83 GLALQALGRYEEALEDYDKALELD--------------------------------------------------PDD--- 109

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 592 pnsctptitdekmFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSK 671
Cdd:COG0457   110 -------------AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALA 176

                         250       260
                  ....*....|....*....|....
gi 1958789625 672 NVKASYRLELAQKGLENCRERVAD 695
Cdd:COG0457   177 ALLAAALGEAALALAAAEVLLALL 200
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
606-684 1.67e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 56.08  E-value: 1.67e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958789625 606 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQK 684
Cdd:COG4785   108 EAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER 186
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 615-704 1.84e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.58  E-value: 1.84e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 615 LVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKGLENCRERVA 694
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143

                          90
                  ....*....|
gi 1958789625 695 DPSQVVLLSP 704
Cdd:COG5010   144 ALQRALGTSP 153
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 431-603 2.02e-08

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 57.10  E-value: 2.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 431 DLKSRGNELFRGGQFAEAAVQYSGAIAqLEPTGSEnadelsiLYSNRAACYLKEGNCRGCIQDCDRALELQPFAVKPLLR 510
Cdd:PLN03088    4 DLEDKAKEAFVDDDFALAVDLYTQAID-LDPNNAE-------LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 511 RAMAYETLEQYRSAYVdyitvlKIDCRIQLASDSvNRITRILTELDGPKWRERLPPIPAVPASEPLRVWHPAAEtpdqdp 590
Cdd:PLN03088   76 KGTACMKLEEYQTAKA------ALEKGASLAPGD-SRFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVE------ 142

                         170
                  ....*....|...
gi 1958789625 591 cPNSCTPTITDEK 603
Cdd:PLN03088  143 -EADATPVVPPSK 154
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 569-695 7.30e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 56.15  E-value: 7.30e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 569 AVPASEPLRVWHPAAETPDQDPCPN-SCTPTITDE---KMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKAcAIYTN 644
Cdd:TIGR00990  87 KTEEKKSTAPKNAPVEPADELPEIDeSSVANLSEEerkKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-VYYSN 165

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958789625 645 RALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKGLENCRERVAD 695
Cdd:TIGR00990 166 RAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 222-325 9.67e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 51.15  E-value: 9.67e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 222 EAFYSGDYEEAVMYYTRSLSALP----TATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIK---ALLRRATTYKHQN 294
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRYPnsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELG 81

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1958789625 295 KFLEAVDDLRKVLQAEPDNDLAKKTLSEVER 325
Cdd:COG1729    82 DYDKARATLEELIKKYPDSEAAKEARARLAR 112
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 228-336 1.57e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.88  E-value: 1.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 228 DYEEAVMYYTRSLSALPTATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVL 307
Cdd:COG5010    36 NTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKAL 115

                          90       100
                  ....*....|....*....|....*....
gi 1958789625 308 QAEPDNDLAKKTLSEVERELKNSEPASEL 336
Cdd:COG5010   116 ALSPDNPNAYSNLAALLLSLGQDDEAKAA 144
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 606-706 3.30e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.19  E-value: 3.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 606 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKG 685
Cdd:COG4783    39 EAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118

                          90       100
                  ....*....|....*....|.
gi 1958789625 686 LENCRERVADPSQVVLLSPDS 706
Cdd:COG4783   119 LGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 246-329 3.46e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 54.23  E-value: 3.46e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 246 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVER 325
Cdd:COG3914    78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157


                  ....
gi 1958789625 326 ELKN 329
Cdd:COG3914   158 RLGR 161
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 612-701 5.49e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.46  E-value: 5.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 612 GNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQkgLENCRE 691
Cdd:COG3914   153 GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL--RQACDW 230

                          90
                  ....*....|
gi 1958789625 692 RVADPSQVVL 701
Cdd:COG3914   231 EVYDRFEELL 240
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
417-535 6.88e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 51.07  E-value: 6.88e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 417 NHDLEERRAADSPGDLKSRGNELFRGGQFAEAAVQYSGAIAQLEPTGSENADELSILYSNRAACYLKEGNCRGCIQDCDR 496
Cdd:COG4785    19 ASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQ 98

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1958789625 497 ALELQPFAVKPLLRRAMAYETLEQYRSAYVDYITVLKID 535
Cdd:COG4785    99 ALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD 137
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 219-339 7.77e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.65  E-value: 7.77e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 219 KGNEAFYSGDYEEAVMYYTRSLSALP-TATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFL 297
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPeTVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1958789625 298 EAVDDLRKVLQAEPDNDLAKKTLSEVERELKNSEPASELQTK 339
Cdd:COG2956    94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLER 135
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
255-336 7.87e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.86  E-value: 7.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 255 AEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVdDLRKVLQAEPDNDLAKKTLSEVERELKNSEPAS 334
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79


                  ..
gi 1958789625 335 EL 336
Cdd:COG3063    80 AY 81
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 606-713 8.42e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 52.69  E-value: 8.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 606 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRL-ELAQK 684
Cdd:COG3914    79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLgEALRR 158

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1958789625 685 ------GLENCRervadpsQVVLLSPDSSEAARHL 713
Cdd:COG3914   159 lgrleeAIAALR-------RALELDPDNAEALNNL 186
TPR_1 pfam00515
Tetratricopeptide repeat;
641-672 1.11e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 45.49  E-value: 1.11e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1958789625 641 IYTNRALCYLKLGQFEEAKLDCDKALQIDSKN 672
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 601-713 1.20e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 52.30  E-value: 1.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 601 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLE 680
Cdd:COG3914   108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1958789625 681 LAQKGLENCRERVADPSQVVLLSPDSSEAARHL 713
Cdd:COG3914   188 NALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 220-331 1.36e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.39  E-value: 1.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 220 GNEAFYSGDYEEAVMYYTRSLSALPTATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEA 299
Cdd:TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKA 789

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1958789625 300 VDDLRKVLQAEPDNDLAKKTLSEVERELKNSE 331
Cdd:TIGR02917 790 IKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR 821
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 422-535 1.83e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 1.83e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 422 ERRAADSPGDLKSR---GNELFRGGQFAEAAVQYSGAIaQLEPtgsENADelsiLYSNRAACYLKEGNCRGCIQDCDRAL 498
Cdd:COG4235     7 RQALAANPNDAEGWlllGRAYLRLGRYDEALAAYEKAL-RLDP---DNAD----ALLDLAEALLAAGDTEEAEELLERAL 78

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1958789625 499 ELQPFAVKPLLRRAMAYETLEQYRSAYVDYITVLKID 535
Cdd:COG4235    79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 600-713 4.72e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.34  E-value: 4.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 600 TDEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASY-- 677
Cdd:COG2956   105 LDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLll 184

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1958789625 678 -RLELAQKGLENCRERVadpSQVVLLSPDSSEAARHL 713
Cdd:COG2956   185 aELYLEQGDYEEAIAAL---ERALEQDPDYLPALPRL 218
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 265-336 5.00e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.54  E-value: 5.00e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958789625 265 ALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVERELKNSEPASEL 336
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEEL 73
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
615-679 5.38e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.55  E-value: 5.38e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958789625 615 LVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAkLDCDKALQIDSKNVKASYRL 679
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNL 65
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 641-672 6.97e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.59  E-value: 6.97e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1958789625  641 IYTNRALCYLKLGQFEEAKLDCDKALQIDSKN 672
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 606-713 1.00e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.95  E-value: 1.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 606 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKG 685
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                          90       100
                  ....*....|....*....|....*...
gi 1958789625 686 LENCRERVADPSQVVLLSPDSSEAARHL 713
Cdd:COG4783    85 AGDYDEALALLEKALKLDPEHPEAYLRL 112
TPR_1 pfam00515
Tetratricopeptide repeat;
246-279 1.33e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.79  E-value: 1.33e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1958789625 246 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGN 279
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
632-709 2.22e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.92  E-value: 2.22e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958789625 632 LKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKGLENCRERVADPSQVVLLSPDSSEA 709
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 423-535 3.45e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 47.68  E-value: 3.45e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 423 RRAADSPGDLKSRGNELFRGGQFAEAAVQYSGAIAqLEPtgsENADelsiLYSNRAACYLKEGNCRGCIQDCDRALELQP 502
Cdd:COG3914   106 ALNPDNAEALFNLGNLLLALGRLEEALAALRRALA-LNP---DFAE----AYLNLGEALRRLGRLEEAIAALRRALELDP 177

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1958789625 503 FAVKPLLRRAMAYETLEQYRSAYVDYITVLKID 535
Cdd:COG3914   178 DNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 246-279 4.54e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.28  E-value: 4.54e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1958789625  246 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGN 279
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
601-671 5.03e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 5.03e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958789625 601 DEKMFQALKEEGNQLVKDKNYKDAIsKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSK 671
Cdd:COG3063    22 DPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 612-710 5.77e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.84  E-value: 5.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 612 GNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKGLENCRE 691
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103

                          90
                  ....*....|....*....
gi 1958789625 692 RVADPSQVVLLSPDSSEAA 710
Cdd:COG4235   104 AIAAWQKLLALLPADAPAR 122
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 220-313 7.24e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 46.62  E-value: 7.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 220 GNEAFYSGDYEEAVMYYTRSLSALPTAtAYNNRAQAEIKLQ--RWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFL 297
Cdd:TIGR02917 132 GLAYLGLGQLELAQKSYEQALAIDPRS-LYAKLGLAQLALAenRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIE 210

                          90
                  ....*....|....*.
gi 1958789625 298 EAVDDLRKVLQAEPDN 313
Cdd:TIGR02917 211 LALAAYRKAIALRPNN 226
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 227-316 8.17e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.52  E-value: 8.17e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 227 GDYEEAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKA------LLRRATTYKHQNKFLEA 299
Cdd:COG3914   160 GRLEEAIAALRRALELDPDnAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAhsnllfALRQACDWEVYDRFEEL 239

                          90       100
                  ....*....|....*....|....*
gi 1958789625 300 VDDLRK--------VLQAEPDNDLA 316
Cdd:COG3914   240 LAALARgpselspfALLYLPDDDPA 264
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 220-329 2.06e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.07  E-value: 2.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 220 GNEAFYSGDYEEAVMYYTRSLSALPTA--TAYNnRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFL 297
Cdd:TIGR02917 234 ATILIEAGEFEEAEKHADALLKKAPNSplAHYL-KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1958789625 298 EAVDDLRKVLQAEPDNDLAKKTLSEVERELKN 329
Cdd:TIGR02917 313 QAYQYLNQILKYAPNSHQARRLLASIQLRLGR 344
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 435-708 2.11e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.95  E-value: 2.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 435 RGNELFRGGQFAEAAVQYSGAIaQLEPtgsENADelsiLYSNRAACYLKEGNCRGCIQDCDRALELQPFAVKPLLRRAMA 514
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEAL-ELDP---ETVE----AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 515 YETLEQYRSAYVDYITVLKIDcriQLASDSVNRITRILTELDgpKWRErlppipAVPASEPLrvwhpAAETPDQDpcpns 594
Cdd:COG2956    86 YLKAGLLDRAEELLEKLLELD---PDDAEALRLLAEIYEQEG--DWEK------AIEVLERL-----LKLGPENA----- 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 595 ctptitdekmfQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVK 674
Cdd:COG2956   145 -----------HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLP 213

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1958789625 675 ASYRLELAQKGLENCRERVADPSQVVLLSPDSSE 708
Cdd:COG2956   214 ALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247
TPR_12 pfam13424
Tetratricopeptide repeat;
245-309 2.40e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 40.45  E-value: 2.40e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958789625 245 TATAYNNRAQAEIKLQRWSSALEDCEKALELE--------PGNIKALLRRATTYKHQNKFLEAVDDLRKVLQA 309
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 618-787 2.41e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 44.39  E-value: 2.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 618 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKGLENCRERVADPS 697
Cdd:PLN03088   15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 698 QVVLLSPDSSEAARHLDTKNDTAPpsrererrrieiQEVDDSSDEEPERPAEASAVEEGWSAERAGKIEVCKPRNAYEFG 777
Cdd:PLN03088   95 KGASLAPGDSRFTKLIKECDEKIA------------EEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKPKYRHEFY 162

                         170
                  ....*....|....
gi 1958789625 778 Q----VLSTISARK 787
Cdd:PLN03088  163 QkpeeVVVTVFAKG 176
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 601-695 4.39e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.18  E-value: 4.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 601 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKN--VKASYR 678
Cdd:COG2956   174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDdlLLALAD 253

                          90
                  ....*....|....*..
gi 1958789625 679 LELAQKGLENCRERVAD 695
Cdd:COG2956   254 LLERKEGLEAALALLER 270
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
273-528 4.69e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 42.69  E-value: 4.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 273 LELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVERELKNSEPASELQTKgkrmVIEEvensg 352
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQ----ALEL----- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 353 deggkgdeddheddgvdmaamgniqkklmvrsqggrrsrrartpmpgaeqqegQPETGTAstsdnhdleerraadspgdL 432
Cdd:COG0457    72 -----------------------------------------------------DPDDAEA-------------------L 79

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 433 KSRGNELFRGGQFAEAAVQYSGAIaQLEPtgsenadELSILYSNRAACYLKEGNCRGCIQDCDRALELQPFAVKPLLRRA 512
Cdd:COG0457    80 NNLGLALQALGRYEEALEDYDKAL-ELDP-------DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLG 151

                         250
                  ....*....|....*.
gi 1958789625 513 MAYETLEQYRSAYVDY 528
Cdd:COG0457   152 IALEKLGRYEEALELL 167
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 601-669 9.00e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.71  E-value: 9.00e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958789625 601 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQID 669
Cdd:COG5010    84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 246-278 9.15e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.50  E-value: 9.15e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1958789625 246 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPG 278
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 227-502 1.17e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.76  E-value: 1.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 227 GDYEEAVMYYTRSLSALPTAT-AYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRK 305
Cdd:TIGR02917 173 NRFDEARALIDEVLTADPGNVdALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 306 VLQAEPDNDLAKKTLSEVERELKNSEPASElqtkgkrmVIEEVENSGDEggkgDEDDHEDDGVDMAAMGNIQKK---LMV 382
Cdd:TIGR02917 253 LLKKAPNSPLAHYLKALVDFQKKNYEDARE--------TLQDALKSAPE----YLPALLLAGASEYQLGNLEQAyqyLNQ 320

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 383 RSQGGRRSRRARTPMPGAEQQEGQPETGTASTSDnhdlEERRAADSPGDLKSRGNELFRGGQFAEAAvQYSGAIAQLEPt 462
Cdd:TIGR02917 321 ILKYAPNSHQARRLLASIQLRLGRVDEAIATLSP----ALGLDPDDPAALSLLGEAYLALGDFEKAA-EYLAKATELDP- 394

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1958789625 463 gsENADelsiLYSNRAACYLKEGNCRGCIQDCDRALELQP 502
Cdd:TIGR02917 395 --ENAA----ARTQLGISKLSQGDPSEAIADLETAAQLDP 428
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 226-313 1.53e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.38  E-value: 1.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 226 SGDYEEAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRwSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLR 304
Cdd:TIGR02917 783 QKDYDKAIKHYQTVVKKAPDnAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861


                  ....*....
gi 1958789625 305 KVLQAEPDN 313
Cdd:TIGR02917 862 KAVNIAPEA 870
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 474-502 2.08e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 2.08e-03
                           10        20
                   ....*....|....*....|....*....
gi 1958789625  474 YSNRAACYLKEGNCRGCIQDCDRALELQP 502
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 641-669 2.65e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.96  E-value: 2.65e-03
                          10        20
                  ....*....|....*....|....*....
gi 1958789625 641 IYTNRALCYLKLGQFEEAKLDCDKALQID 669
Cdd:pfam07719   3 ALYNLGLAYYKLGDYEEALEAYEKALELD 31
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 246-339 2.95e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.22  E-value: 2.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 246 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVER 325
Cdd:TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544

                          90
                  ....*....|....
gi 1958789625 326 ELKNSEPASELQTK 339
Cdd:TIGR02917 545 RTGNEEEAVAWLEK 558
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 610-683 2.97e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.48  E-value: 2.97e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958789625 610 EEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKAsyRLELAQ 683
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEA--LLELAQ 84
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 264-336 2.98e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.22  E-value: 2.98e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958789625 264 SALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVERELKNSEPASEL 336
Cdd:TIGR02917 619 KAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 219-333 3.05e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.22  E-value: 3.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 219 KGNEAFYSGDYEEAVMYYTRSLSALPTATAYN-NRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFL 297
Cdd:TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLlALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYE 278

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1958789625 298 EAVDDLRKVLQAEPDNDLAKKTLSEVERELKNSEPA 333
Cdd:TIGR02917 279 DARETLQDALKSAPEYLPALLLAGASEYQLGNLEQA 314
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 224-287 3.62e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.45  E-value: 3.62e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958789625 224 FYSGDYEEAVMYYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRA 287
Cdd:COG4235    62 LAAGDTEEAEELLERALALDPDnPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEA 126
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 642-706 3.93e-03

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 40.01  E-value: 3.93e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 642 YTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKAsyRLELAQKGLE-----NCRERVADPSQVVLLSPDS 706
Cdd:TIGR02521 138 LENAGLCALKAGDFDKAEKYLTRALQIDPQRPES--LLELAELYYLrgqykDARAYLERYQQTYNQTAES 205
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 439-535 4.12e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.79  E-value: 4.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 439 LFRGGQFAEAAVQYSGAIaQLEPTGSEnadelsiLYSNRAACYLKEGNCRGCIQDCDRALELQPFAVKPLLRRAMAYETL 518
Cdd:COG5010    64 YNKLGDFEESLALLEQAL-QLDPNNPE-------LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135

                          90
                  ....*....|....*..
gi 1958789625 519 EQYRSAYVDYITVLKID 535
Cdd:COG5010   136 GQDDEAKAALQRALGTS 152
TPR_8 pfam13181
Tetratricopeptide repeat;
641-671 4.16e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 35.45  E-value: 4.16e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1958789625 641 IYTNRALCYLKLGQFEEAKLDCDKALQIDSK 671
Cdd:pfam13181   3 AYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_17 pfam13431
Tetratricopeptide repeat;
269-300 4.90e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 35.21  E-value: 4.90e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1958789625 269 CEKALELEPGNIKALLRRATTYKHQNKFLEAV 300
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETAL 33
TPR_12 pfam13424
Tetratricopeptide repeat;
224-275 5.08e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.60  E-value: 5.08e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958789625 224 FYSGDYEEAVMYYTRSLSA---------LPTATAYNNRAQAEIKLQRWSSALEDCEKALEL 275
Cdd:pfam13424  14 RRLGRYDEALELLEKALEIarrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 219-279 5.13e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.55  E-value: 5.13e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958789625 219 KGNEAFYSGDYEEAVMYYTRSLSALP----TATAYNNRAQAEIKLQRWSSALEDCEKALELEPGN 279
Cdd:pfam13432   3 LARAALRAGDYDDAAAALEAALARFPespdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 636-672 7.39e-03

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 38.86  E-value: 7.39e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1958789625 636 SKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKN 672
Cdd:TIGR02521  28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD 64
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 280-313 7.93e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 7.93e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1958789625  280 IKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDN 313
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_11 pfam13414
TPR repeat;
612-653 8.34e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.14  E-value: 8.34e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1958789625 612 GNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLG 653
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 645-713 9.18e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.02  E-value: 9.18e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958789625 645 RALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKGLENCRERVADPSQVVLLSPDSSEAARHL 713
Cdd:COG5010    60 SDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNL 128
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 219-336 9.30e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 39.12  E-value: 9.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789625 219 KGNEAFYSGDYEEAVMYYTRSLSALPTAT-AYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKA-LLRRATTYKHQNKF 296
Cdd:COG3071    22 EGLLALAEGRYARAEKLLSKAAEHSEAPLlAYLLAARAAQALGDYERRDEYLAQALELAPEAELAvLLTRAELLLDQGQA 101

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1958789625 297 LEAVDDLRKVLQAEPDNDLAKKTLSEVERELKNSEPASEL 336
Cdd:COG3071   102 EQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLEL 141
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH