NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958789627|ref|XP_038935142|]
View 

sperm-associated antigen 1 isoform X2 [Rattus norvegicus]

Protein Classification

RPAP3_C domain-containing protein( domain architecture ID 10620668)

RPAP3_C domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
537-628 1.36e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


:

Pssm-ID: 464012  Cd Length: 91  Bit Score: 92.34  E-value: 1.36e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 537 PRNAYEFGQVLSTIsaRKDEEACAQLLVFTAPQDLPVLLSNKLEGDMLLLIMQSLKSHLVAK-DPSLVCKHLLYLSKAER 615
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78
                          90
                  ....*....|...
gi 1958789627 616 FEMMLALTSKDQK 628
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-100 2.47e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 67.34  E-value: 2.47e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627   2 YYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDN 80
Cdd:COG0457    30 DYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD 109
                          90       100
                  ....*....|....*....|
gi 1958789627  81 DLAKKTLSEVERELKNSEPA 100
Cdd:COG0457   110 AEALYNLGLALLELGRYDEA 129
3a0801s09 super family cl36792
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
199-336 1.28e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00990:

Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 64.62  E-value: 1.28e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 199 LKSRGNELFRGGQFAEAAVQYSGAIaQLEPTgsenadelSILYSNRAACYLKEGNCRGCIQDCDRALELQPFAVKPLLRR 278
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAI-ECKPD--------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1958789627 279 AMAYETLEQYRSAYVDyITVLKIDCRIQLASdSVNRITRILTELDGPKWRERLPPIPA 336
Cdd:TIGR00990 201 ANAYDGLGKYADALLD-LTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPE 256
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
368-480 4.88e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.41  E-value: 4.88e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 368 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLE 447
Cdd:COG0457    38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1958789627 448 LAQKGLENCRERVADPSQVVLLSPDSSEAARHL 480
Cdd:COG0457   118 LALLELGRYDEAIEAYERALELDPDDADALYNL 150
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
537-628 1.36e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 92.34  E-value: 1.36e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 537 PRNAYEFGQVLSTIsaRKDEEACAQLLVFTAPQDLPVLLSNKLEGDMLLLIMQSLKSHLVAK-DPSLVCKHLLYLSKAER 615
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78
                          90
                  ....*....|...
gi 1958789627 616 FEMMLALTSKDQK 628
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-100 2.47e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 67.34  E-value: 2.47e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627   2 YYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDN 80
Cdd:COG0457    30 DYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD 109
                          90       100
                  ....*....|....*....|
gi 1958789627  81 DLAKKTLSEVERELKNSEPA 100
Cdd:COG0457   110 AEALYNLGLALLELGRYDEA 129
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
199-336 1.28e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 64.62  E-value: 1.28e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 199 LKSRGNELFRGGQFAEAAVQYSGAIaQLEPTgsenadelSILYSNRAACYLKEGNCRGCIQDCDRALELQPFAVKPLLRR 278
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAI-ECKPD--------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1958789627 279 AMAYETLEQYRSAYVDyITVLKIDCRIQLASdSVNRITRILTELDGPKWRERLPPIPA 336
Cdd:TIGR00990 201 ANAYDGLGKYADALLD-LTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPE 256
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
368-480 4.88e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.41  E-value: 4.88e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 368 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLE 447
Cdd:COG0457    38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1958789627 448 LAQKGLENCRERVADPSQVVLLSPDSSEAARHL 480
Cdd:COG0457   118 LALLELGRYDEAIEAYERALELDPDDADALYNL 150
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
188-336 3.44e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 57.62  E-value: 3.44e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 188 EERRAADSPGDLKSRGNELFRGGQFAEAAVQYSGAIAqLEPtgsenadELSILYSNRAACYLKEGNCRGCIQDCDRALEL 267
Cdd:COG4785    65 RALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALE-LDP-------DLAEAYNNRGLAYLLLGDYDAALEDFDRALEL 136
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958789627 268 QPFAVKPLLRRAMAYETLEQYRSAYVDYITVLKIDCRIQLASDSVNRITRiltELDGPKWRERLPPIPA 336
Cdd:COG4785   137 DPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER---KLDPEKALALLLEDWA 202
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
198-370 8.18e-09

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 57.87  E-value: 8.18e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 198 DLKSRGNELFRGGQFAEAAVQYSGAIAqLEPTGSEnadelsiLYSNRAACYLKEGNCRGCIQDCDRALELQPFAVKPLLR 277
Cdd:PLN03088    4 DLEDKAKEAFVDDDFALAVDLYTQAID-LDPNNAE-------LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 278 RAMAYETLEQYRSAYVdyitvlKIDCRIQLASDSvNRITRILTELDGPKWRERLPPIPAVPASEPLRVWHPAAEtpdqdp 357
Cdd:PLN03088   76 KGTACMKLEEYQTAKA------ALEKGASLAPGD-SRFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVE------ 142
                         170
                  ....*....|...
gi 1958789627 358 cPNSCTPTITDEK 370
Cdd:PLN03088  143 -EADATPVVPPSK 154
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
2-70 3.66e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 56.53  E-value: 3.66e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958789627   2 YYTRSLSALPTATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDL 70
Cdd:TIGR00990 149 LYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
336-462 4.31e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 56.15  E-value: 4.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 336 AVPASEPLRVWHPAAETPDQDPCPN-SCTPTITDE---KMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKAcAIYTN 411
Cdd:TIGR00990  87 KTEEKKSTAPKNAPVEPADELPEIDeSSVANLSEEerkKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-VYYSN 165
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958789627 412 RALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKGLENCRERVAD 462
Cdd:TIGR00990 166 RAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216
TPR_1 pfam00515
Tetratricopeptide repeat;
408-439 1.35e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 45.10  E-value: 1.35e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1958789627 408 IYTNRALCYLKLGQFEEAKLDCDKALQIDSKN 439
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
3-55 4.72e-06

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 49.40  E-value: 4.72e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1958789627   3 YTRSLSALP-TATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRAT 55
Cdd:PLN03088   25 YTQAIDLDPnNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
408-439 8.27e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.82  E-value: 8.27e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1958789627  408 IYTNRALCYLKLGQFEEAKLDCDKALQIDSKN 439
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
13-46 1.50e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.02  E-value: 1.50e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1958789627  13 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGN 46
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
13-46 5.45e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.51  E-value: 5.45e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1958789627   13 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGN 46
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
385-554 1.19e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 44.78  E-value: 1.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 385 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKGLENCRERVADPS 464
Cdd:PLN03088   15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 465 QVVLLSPDSSEAARHLDTKNDTAPpsrererrrieiQEVDDSSDEEPERPAEASAVEEGWSAERAGKIEVCKPRNAYEFG 544
Cdd:PLN03088   95 KGASLAPGDSRFTKLIKECDEKIA------------EEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKPKYRHEFY 162
                         170
                  ....*....|....
gi 1958789627 545 Q----VLSTISARK 554
Cdd:PLN03088  163 QkpeeVVVTVFAKG 176
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
241-269 2.33e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.89  E-value: 2.33e-03
                           10        20
                   ....*....|....*....|....*....
gi 1958789627  241 YSNRAACYLKEGNCRGCIQDCDRALELQP 269
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
537-628 1.36e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 92.34  E-value: 1.36e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 537 PRNAYEFGQVLSTIsaRKDEEACAQLLVFTAPQDLPVLLSNKLEGDMLLLIMQSLKSHLVAK-DPSLVCKHLLYLSKAER 615
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78
                          90
                  ....*....|...
gi 1958789627 616 FEMMLALTSKDQK 628
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-100 2.47e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 67.34  E-value: 2.47e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627   2 YYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDN 80
Cdd:COG0457    30 DYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD 109
                          90       100
                  ....*....|....*....|
gi 1958789627  81 DLAKKTLSEVERELKNSEPA 100
Cdd:COG0457   110 AEALYNLGLALLELGRYDEA 129
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-103 3.06e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.95  E-value: 3.06e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627   2 YYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDN 80
Cdd:COG0457    64 DYEQALELDPDdAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD 143
                          90       100
                  ....*....|....*....|...
gi 1958789627  81 DLAKKTLSEVERELKNSEPASEL 103
Cdd:COG0457   144 ADALYNLGIALEKLGRYEEALEL 166
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
13-106 4.90e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.49  E-value: 4.90e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627  13 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVER 92
Cdd:COG0457     8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87
                          90
                  ....*....|....
gi 1958789627  93 ELKNSEPASELQTK 106
Cdd:COG0457    88 ALGRYEEALEDYDK 101
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
3-105 5.27e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 63.01  E-value: 5.27e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627   3 YTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDND 81
Cdd:COG4785    96 FDQALELDPDlAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175
                          90       100
                  ....*....|....*....|....
gi 1958789627  82 LAKKTLSEVERELKNSEPASELQT 105
Cdd:COG4785   176 ERALWLYLAERKLDPEKALALLLE 199
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
199-336 1.28e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 64.62  E-value: 1.28e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 199 LKSRGNELFRGGQFAEAAVQYSGAIaQLEPTgsenadelSILYSNRAACYLKEGNCRGCIQDCDRALELQPFAVKPLLRR 278
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAI-ECKPD--------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1958789627 279 AMAYETLEQYRSAYVDyITVLKIDCRIQLASdSVNRITRILTELDGPKWRERLPPIPA 336
Cdd:TIGR00990 201 ANAYDGLGKYADALLD-LTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPE 256
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
2-83 3.26e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 60.70  E-value: 3.26e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627   2 YYTRSLSALPTATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDND 81
Cdd:COG4785    62 RIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYA 141

                  ..
gi 1958789627  82 LA 83
Cdd:COG4785   142 YA 143
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
368-480 4.88e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.41  E-value: 4.88e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 368 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLE 447
Cdd:COG0457    38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1958789627 448 LAQKGLENCRERVADPSQVVLLSPDSSEAARHL 480
Cdd:COG0457   118 LALLELGRYDEAIEAYERALELDPDDADALYNL 150
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
2-80 1.14e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 61.55  E-value: 1.14e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627   2 YYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDN 80
Cdd:COG3914   100 LYRRALALNPDnAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDN 179
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
368-480 2.03e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.48  E-value: 2.03e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 368 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLE 447
Cdd:COG0457     4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1958789627 448 LAQKGLENCRERVADPSQVVLLSPDSSEAARHL 480
Cdd:COG0457    84 LALQALGRYEEALEDYDKALELDPDDAEALYNL 116
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
2-83 2.16e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.39  E-value: 2.16e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627   2 YYTRSLSALP-TATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDN 80
Cdd:COG3914   134 ALRRALALNPdFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDN 213

                  ...
gi 1958789627  81 DLA 83
Cdd:COG3914   214 ADA 216
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
188-336 3.44e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 57.62  E-value: 3.44e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 188 EERRAADSPGDLKSRGNELFRGGQFAEAAVQYSGAIAqLEPtgsenadELSILYSNRAACYLKEGNCRGCIQDCDRALEL 267
Cdd:COG4785    65 RALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALE-LDP-------DLAEAYNNRGLAYLLLGDYDAALEDFDRALEL 136
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958789627 268 QPFAVKPLLRRAMAYETLEQYRSAYVDYITVLKIDCRIQLASDSVNRITRiltELDGPKWRERLPPIPA 336
Cdd:COG4785   137 DPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER---KLDPEKALALLLEDWA 202
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
198-370 8.18e-09

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 57.87  E-value: 8.18e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 198 DLKSRGNELFRGGQFAEAAVQYSGAIAqLEPTGSEnadelsiLYSNRAACYLKEGNCRGCIQDCDRALELQPFAVKPLLR 277
Cdd:PLN03088    4 DLEDKAKEAFVDDDFALAVDLYTQAID-LDPNNAE-------LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 278 RAMAYETLEQYRSAYVdyitvlKIDCRIQLASDSvNRITRILTELDGPKWRERLPPIPAVPASEPLRVWHPAAEtpdqdp 357
Cdd:PLN03088   76 KGTACMKLEEYQTAKA------ALEKGASLAPGD-SRFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVE------ 142
                         170
                  ....*....|...
gi 1958789627 358 cPNSCTPTITDEK 370
Cdd:PLN03088  143 -EADATPVVPPSK 154
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
13-110 1.10e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.04  E-value: 1.10e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627  13 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVER 92
Cdd:COG4783    38 PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYR 117
                          90
                  ....*....|....*...
gi 1958789627  93 ELKNSEPASELQTKGKRM 110
Cdd:COG4783   118 ALGRPDEAIAALEKALEL 135
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
363-480 1.48e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 55.69  E-value: 1.48e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 363 TPTITDEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKA 442
Cdd:COG4785    64 DRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1958789627 443 SYRLELAQKGLENCRERVADPSQVVLLSPDSSEAARHL 480
Cdd:COG4785   144 YLNRGIALYYLGRYELAIADLEKALELDPNDPERALWL 181
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-106 2.49e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.40  E-value: 2.49e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627   2 YYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDN 80
Cdd:COG0457    98 DYDKALELDPDdAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAA 177
                          90       100
                  ....*....|....*....|....*.
gi 1958789627  81 DLAKKTLSEVERELKNSEPASELQTK 106
Cdd:COG0457   178 LLAAALGEAALALAAAEVLLALLLAL 203
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
13-100 2.64e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.70  E-value: 2.64e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627  13 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVER 92
Cdd:COG4235    17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96

                  ....*...
gi 1958789627  93 ELKNSEPA 100
Cdd:COG4235    97 QQGDYAEA 104
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
13-103 2.95e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.89  E-value: 2.95e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627  13 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVER 92
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
                          90
                  ....*....|.
gi 1958789627  93 ELKNSEPASEL 103
Cdd:COG4783    84 KAGDYDEALAL 94
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
2-70 3.66e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 56.53  E-value: 3.66e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958789627   2 YYTRSLSALPTATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDL 70
Cdd:TIGR00990 149 LYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
336-462 4.31e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 56.15  E-value: 4.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 336 AVPASEPLRVWHPAAETPDQDPCPN-SCTPTITDE---KMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKAcAIYTN 411
Cdd:TIGR00990  87 KTEEKKSTAPKNAPVEPADELPEIDeSSVANLSEEerkKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-VYYSN 165
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958789627 412 RALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKGLENCRERVAD 462
Cdd:TIGR00990 166 RAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
373-451 6.74e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 53.77  E-value: 6.74e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958789627 373 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQK 451
Cdd:COG4785   108 EAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER 186
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
2-81 1.44e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.77  E-value: 1.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627   2 YYTRSLSALP-TATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDN 80
Cdd:COG4235    39 AYEKALRLDPdNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118

                  .
gi 1958789627  81 D 81
Cdd:COG4235   119 A 119
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
2-79 1.72e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.40  E-value: 1.72e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958789627   2 YYTRSLSALP-TATAYNNRAQAEIKLQRWSSALEdCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPD 79
Cdd:COG3063    14 YYEKALELDPdNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
13-103 2.21e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.81  E-value: 2.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627  13 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVER 92
Cdd:COG2956   144 AHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYE 223
                          90
                  ....*....|.
gi 1958789627  93 ELKNSEPASEL 103
Cdd:COG2956   224 KLGDPEEALEL 234
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
382-471 2.99e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.34  E-value: 2.99e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 382 LVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKGLENCRERVA 461
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
                          90
                  ....*....|
gi 1958789627 462 DPSQVVLLSP 471
Cdd:COG5010   144 ALQRALGTSP 153
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
2-80 3.03e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.19  E-value: 3.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627   2 YYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDN 80
Cdd:COG4783    60 LLHEALELDPDePEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
199-462 3.25e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.93  E-value: 3.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 199 LKSRGNELFRGGQFAEAAVQYSGAIAqLEPtgsenadELSILYSNRAACYLKEGNCRGCIQDCDRALELQPFAVKPLLRR 278
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALE-LDP-------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 279 AMAYETLEQYRSAYVDYITVLKIDcriqlasdsvnritrilteldgpkwrerlppipavpaseplrvwhpaaetPDQdpc 358
Cdd:COG0457    83 GLALQALGRYEEALEDYDKALELD--------------------------------------------------PDD--- 109
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 359 pnsctptitdekmFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSK 438
Cdd:COG0457   110 -------------AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALA 176
                         250       260
                  ....*....|....*....|....
gi 1958789627 439 NVKASYRLELAQKGLENCRERVAD 462
Cdd:COG0457   177 ALLAAALGEAALALAAAEVLLALL 200
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
2-103 3.80e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.04  E-value: 3.80e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627   2 YYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDN 80
Cdd:COG2956   166 ALEKALKLDPDcARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245
                          90       100
                  ....*....|....*....|...
gi 1958789627  81 DlAKKTLSEVERELKNSEPASEL 103
Cdd:COG2956   246 D-LLLALADLLERKEGLEAALAL 267
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
13-96 6.12e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 52.69  E-value: 6.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627  13 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVER 92
Cdd:COG3914    78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157

                  ....
gi 1958789627  93 ELKN 96
Cdd:COG3914   158 RLGR 161
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
2-78 6.80e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.57  E-value: 6.80e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958789627   2 YYTRSLSALPT-ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEP 78
Cdd:COG5010    76 LLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
379-468 1.02e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.92  E-value: 1.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 379 GNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQkgLENCRE 458
Cdd:COG3914   153 GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL--RQACDW 230
                          90
                  ....*....|
gi 1958789627 459 RVADPSQVVL 468
Cdd:COG3914   231 EVYDRFEELL 240
TPR_1 pfam00515
Tetratricopeptide repeat;
408-439 1.35e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 45.10  E-value: 1.35e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1958789627 408 IYTNRALCYLKLGQFEEAKLDCDKALQIDSKN 439
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
373-473 1.65e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.88  E-value: 1.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 373 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKG 452
Cdd:COG4783    39 EAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118
                          90       100
                  ....*....|....*....|.
gi 1958789627 453 LENCRERVADPSQVVLLSPDS 473
Cdd:COG4783   119 LGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
368-480 1.92e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.15  E-value: 1.92e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 368 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLE 447
Cdd:COG3914   108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1958789627 448 LAQKGLENCRERVADPSQVVLLSPDSSEAARHL 480
Cdd:COG3914   188 NALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
373-480 1.99e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.15  E-value: 1.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 373 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKG 452
Cdd:COG3914    79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158
                          90       100
                  ....*....|....*....|....*...
gi 1958789627 453 LENCRERVADPSQVVLLSPDSSEAARHL 480
Cdd:COG3914   159 LGRLEEAIAALRRALELDPDNAEALNNL 186
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
184-302 2.26e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.14  E-value: 2.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 184 NHDLEERRAADSPGDLKSRGNELFRGGQFAEAAVQYSGAIAQLEPTGSENADELSILYSNRAACYLKEGNCRGCIQDCDR 263
Cdd:COG4785    19 ASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQ 98
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1958789627 264 ALELQPFAVKPLLRRAMAYETLEQYRSAYVDYITVLKID 302
Cdd:COG4785    99 ALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD 137
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
22-103 3.65e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.55  E-value: 3.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627  22 AEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVdDLRKVLQAEPDNDLAKKTLSEVERELKNSEPAS 101
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                  ..
gi 1958789627 102 EL 103
Cdd:COG3063    80 AY 81
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
13-103 4.09e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.96  E-value: 4.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627  13 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVER 92
Cdd:COG2956   110 AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYL 189
                          90
                  ....*....|.
gi 1958789627  93 ELKNSEPASEL 103
Cdd:COG2956   190 EQGDYEEAIAA 200
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
9-103 4.50e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 4.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627   9 ALPTATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLS 88
Cdd:COG5010    50 LAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLA 129
                          90
                  ....*....|....*
gi 1958789627  89 EVERELKNSEPASEL 103
Cdd:COG5010   130 ALLLSLGQDDEAKAA 144
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
3-55 4.72e-06

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 49.40  E-value: 4.72e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1958789627   3 YTRSLSALP-TATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRAT 55
Cdd:PLN03088   25 YTQAIDLDPnNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
408-439 8.27e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.82  E-value: 8.27e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1958789627  408 IYTNRALCYLKLGQFEEAKLDCDKALQIDSKN 439
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
13-103 1.06e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.80  E-value: 1.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627  13 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVER 92
Cdd:COG2956    76 AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYL 155
                          90
                  ....*....|.
gi 1958789627  93 ELKNSEPASEL 103
Cdd:COG2956   156 EQGDYDEAIEA 166
TPR_1 pfam00515
Tetratricopeptide repeat;
13-46 1.50e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.02  E-value: 1.50e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1958789627  13 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGN 46
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
367-480 1.64e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.03  E-value: 1.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 367 TDEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRL 446
Cdd:COG2956   105 LDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLL 184
                          90       100       110
                  ....*....|....*....|....*....|....
gi 1958789627 447 ELAQKGLENCRERVADPSQVVLLSPDSSEAARHL 480
Cdd:COG2956   185 AELYLEQGDYEEAIAALERALEQDPDYLPALPRL 218
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
189-302 2.23e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 2.23e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 189 ERRAADSPGDLKSR---GNELFRGGQFAEAAVQYSGAIaQLEPtgsENADelsiLYSNRAACYLKEGNCRGCIQDCDRAL 265
Cdd:COG4235     7 RQALAANPNDAEGWlllGRAYLRLGRYDEALAAYEKAL-RLDP---DNAD----ALLDLAEALLAAGDTEEAEELLERAL 78
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1958789627 266 ELQPFAVKPLLRRAMAYETLEQYRSAYVDYITVLKID 302
Cdd:COG4235    79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
32-103 2.32e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 2.32e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958789627  32 ALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVERELKNSEPASEL 103
Cdd:COG4235     2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEEL 73
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
382-446 2.40e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.24  E-value: 2.40e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958789627 382 LVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAkLDCDKALQIDSKNVKASYRL 446
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNL 65
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
373-480 3.92e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.03  E-value: 3.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 373 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKG 452
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
                          90       100
                  ....*....|....*....|....*...
gi 1958789627 453 LENCRERVADPSQVVLLSPDSSEAARHL 480
Cdd:COG4783    85 AGDYDEALALLEKALKLDPEHPEAYLRL 112
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
13-46 5.45e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.51  E-value: 5.45e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1958789627   13 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGN 46
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
190-302 7.52e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 45.75  E-value: 7.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 190 RRAADSPGDLKSRGNELFRGGQFAEAAVQYSGAIAqLEPtgsENADelsiLYSNRAACYLKEGNCRGCIQDCDRALELQP 269
Cdd:COG3914   106 ALNPDNAEALFNLGNLLLALGRLEEALAALRRALA-LNP---DFAE----AYLNLGEALRRLGRLEEAIAALRRALELDP 177
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1958789627 270 FAVKPLLRRAMAYETLEQYRSAYVDYITVLKID 302
Cdd:COG3914   178 DNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
399-476 8.32e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.61  E-value: 8.32e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958789627 399 LKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKGLENCRERVADPSQVVLLSPDSSEA 476
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
385-554 1.19e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 44.78  E-value: 1.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 385 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKGLENCRERVADPS 464
Cdd:PLN03088   15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 465 QVVLLSPDSSEAARHLDTKNDTAPpsrererrrieiQEVDDSSDEEPERPAEASAVEEGWSAERAGKIEVCKPRNAYEFG 544
Cdd:PLN03088   95 KGASLAPGDSRFTKLIKECDEKIA------------EEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKPKYRHEFY 162
                         170
                  ....*....|....
gi 1958789627 545 Q----VLSTISARK 554
Cdd:PLN03088  163 QkpeeVVVTVFAKG 176
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
368-438 2.01e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.92  E-value: 2.01e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958789627 368 DEKMFQALKEEGNQLVKDKNYKDAIsKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSK 438
Cdd:COG3063    22 DPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
379-477 2.27e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.53  E-value: 2.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 379 GNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKGLENCRE 458
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
                          90
                  ....*....|....*....
gi 1958789627 459 RVADPSQVVLLSPDSSEAA 477
Cdd:COG4235   104 AIAAWQKLLALLPADAPAR 122
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
373-475 5.57e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 5.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 373 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKASYRLELAQKG 452
Cdd:COG2956   145 HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK 224
                          90       100
                  ....*....|....*....|...
gi 1958789627 453 LENCRERVADPSQVVLLSPDSSE 475
Cdd:COG2956   225 LGDPEEALELLRKALELDPSDDL 247
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
167-288 5.94e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 43.06  E-value: 5.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 167 AEQQEGQPETGTASTSDNHDLEERRAADSPG-----DLKSRGNELFRGGQFAEAAVQYSGAIAqLEPtgsenadELSILY 241
Cdd:COG3914    44 ALLLLAALAEAAAAALLALAAGEAAAAAAALlllaaLLELAALLLQALGRYEEALALYRRALA-LNP-------DNAEAL 115
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1958789627 242 SNRAACYLKEGNCRGCIQDCDRALELQPFAVKPLLRRAMAYETLEQY 288
Cdd:COG3914   116 FNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRL 162
TPR_12 pfam13424
Tetratricopeptide repeat;
12-76 8.59e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 38.52  E-value: 8.59e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958789627  12 TATAYNNRAQAEIKLQRWSSALEDCEKALELE--------PGNIKALLRRATTYKHQNKFLEAVDDLRKVLQA 76
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
12-106 1.28e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.25  E-value: 1.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627  12 TATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVE 91
Cdd:COG2956    41 TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIY 120
                          90
                  ....*....|....*
gi 1958789627  92 RELKNSEPASELQTK 106
Cdd:COG2956   121 EQEGDWEKAIEVLER 135
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
368-462 1.31e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.25  E-value: 1.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 368 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKN--VKASYR 445
Cdd:COG2956   174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDdlLLALAD 253
                          90
                  ....*....|....*..
gi 1958789627 446 LELAQKGLENCRERVAD 462
Cdd:COG2956   254 LLERKEGLEAALALLER 270
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
13-45 1.36e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 36.73  E-value: 1.36e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1958789627  13 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPG 45
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
19-96 1.42e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.99  E-value: 1.42e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958789627  19 RAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVERELKN 96
Cdd:TIGR02917 267 KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR 344
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
241-269 2.33e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.89  E-value: 2.33e-03
                           10        20
                   ....*....|....*....|....*....
gi 1958789627  241 YSNRAACYLKEGNCRGCIQDCDRALELQP 269
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
12-92 2.44e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.05  E-value: 2.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627  12 TATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIK---ALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLS 88
Cdd:COG1729    29 APDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARA 108

                  ....
gi 1958789627  89 EVER 92
Cdd:COG1729   109 RLAR 112
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
408-436 3.94e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.19  E-value: 3.94e-03
                          10        20
                  ....*....|....*....|....*....
gi 1958789627 408 IYTNRALCYLKLGQFEEAKLDCDKALQID 436
Cdd:pfam07719   3 ALYNLGLAYYKLGDYEEALEAYEKALELD 31
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
368-450 4.16e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.71  E-value: 4.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 368 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNvkASYRLE 447
Cdd:COG2956    72 DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN--AHAYCE 149

                  ...
gi 1958789627 448 LAQ 450
Cdd:COG2956   150 LAE 152
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
31-103 4.43e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.45  E-value: 4.43e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958789627  31 SALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVERELKNSEPASEL 103
Cdd:TIGR02917 619 KAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
13-106 4.59e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.07  E-value: 4.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627  13 ATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTLSEVER 92
Cdd:TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544
                          90
                  ....*....|....
gi 1958789627  93 ELKNSEPASELQTK 106
Cdd:TIGR02917 545 RTGNEEEAVAWLEK 558
TPR_8 pfam13181
Tetratricopeptide repeat;
408-438 4.61e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 35.07  E-value: 4.61e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1958789627 408 IYTNRALCYLKLGQFEEAKLDCDKALQIDSK 438
Cdd:pfam13181   3 AYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
28-80 5.30e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.07  E-value: 5.30e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1958789627  28 RWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDN 80
Cdd:TIGR02917 174 RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN 226
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
368-436 6.55e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.02  E-value: 6.55e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958789627 368 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQID 436
Cdd:COG5010    84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR_17 pfam13431
Tetratricopeptide repeat;
36-67 8.14e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 34.44  E-value: 8.14e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1958789627  36 CEKALELEPGNIKALLRRATTYKHQNKFLEAV 67
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETAL 33
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
377-450 8.24e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.56  E-value: 8.24e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958789627 377 EEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKAsyRLELAQ 450
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEA--LLELAQ 84
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
1-98 8.41e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 8.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627   1 MYYTRSLSALPTATAYNNRAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDN 80
Cdd:TIGR02917 724 QAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN 803
                          90
                  ....*....|....*...
gi 1958789627  81 DLAKKTLSEVERELKNSE 98
Cdd:TIGR02917 804 AVVLNNLAWLYLELKDPR 821
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
47-80 8.62e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 8.62e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1958789627   47 IKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDN 80
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
409-473 8.98e-03

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 38.47  E-value: 8.98e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958789627 409 YTNRALCYLKLGQFEEAKLDCDKALQIDSKNVKAsyRLELAQKGLE-----NCRERVADPSQVVLLSPDS 473
Cdd:TIGR02521 138 LENAGLCALKAGDFDKAEKYLTRALQIDPQRPES--LLELAELYYLrgqykDARAYLERYQQTYNQTAES 205
TPR_11 pfam13414
TPR repeat;
379-420 9.50e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 34.37  E-value: 9.50e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1958789627 379 GNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLG 420
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH