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Conserved domains on  [gi|1958797947|ref|XP_038938074|]
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homeobox protein PKNOX2 isoform X3 [Rattus norvegicus]

Protein Classification

homeobox protein( domain architecture ID 11243274)

homeobox protein is involved in transcriptional regulation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Meis_PKNOX_N pfam16493
N-terminal of Homeobox Meis and PKNOX1; Meis_PKNOX_N is a family found at the N-terminus of ...
 96-181 5.59e-52

N-terminal of Homeobox Meis and PKNOX1; Meis_PKNOX_N is a family found at the N-terminus of Meis, Myeloid ecotropic viral integration site, transcription regulators and PKNOX1 regulators, PBX/knotted 1 homeobox 1, homeobox proteins.


:

Pssm-ID: 465140  Cd Length: 86  Bit Score: 167.14  E-value: 5.59e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958797947  96 GSECITSASFDVDIENFVHQQEQEHKPFFSDDPELDNLMVKAIQVLRIHLLELEKVNELCKDFCNRYITCLKTKMHSDNL 175
Cdd:pfam16493   1 GGDVCSSDSFDEDIAVFAKQIERAEKPIFSPNPELDNLMIKAIQVLRIHLLELEKVHELCDNFCHRYITCLKGKMPSDLV 80


                  ....*.
gi 1958797947 176 LRNDLG 181
Cdd:pfam16493  81 LDDREG 86
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 194-229 1.26e-17

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


:

Pssm-ID: 428673  Cd Length: 39  Bit Score: 75.24  E-value: 1.26e-17
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1958797947 194 HSQHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRR 229
Cdd:pfam05920   4 HLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
PRK13042 super family cl32851
superantigen-like protein SSL4; Reviewed;
4-75 4.66e-03

superantigen-like protein SSL4; Reviewed;


The actual alignment was detected with superfamily member PRK13042:

Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 38.46  E-value: 4.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958797947   4 HASPAPALTMMATQNVPPPPYQDSPQMTATAQPPSKAQaVHIAAPSATASTP------VPSAPIDPQAQLE-----ADKR 72
Cdd:PRK13042   29 NATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTK-VEAPQQTPNATTPsstkveTPQSPTTKQVPTEinpkfKDLR 107


                  ...
gi 1958797947  73 AVY 75
Cdd:PRK13042  108 AYY 110
 
Name Accession Description Interval E-value
Meis_PKNOX_N pfam16493
N-terminal of Homeobox Meis and PKNOX1; Meis_PKNOX_N is a family found at the N-terminus of ...
 96-181 5.59e-52

N-terminal of Homeobox Meis and PKNOX1; Meis_PKNOX_N is a family found at the N-terminus of Meis, Myeloid ecotropic viral integration site, transcription regulators and PKNOX1 regulators, PBX/knotted 1 homeobox 1, homeobox proteins.


Pssm-ID: 465140  Cd Length: 86  Bit Score: 167.14  E-value: 5.59e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958797947  96 GSECITSASFDVDIENFVHQQEQEHKPFFSDDPELDNLMVKAIQVLRIHLLELEKVNELCKDFCNRYITCLKTKMHSDNL 175
Cdd:pfam16493   1 GGDVCSSDSFDEDIAVFAKQIERAEKPIFSPNPELDNLMIKAIQVLRIHLLELEKVHELCDNFCHRYITCLKGKMPSDLV 80


                  ....*.
gi 1958797947 176 LRNDLG 181
Cdd:pfam16493  81 LDDREG 86
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 194-229 1.26e-17

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 75.24  E-value: 1.26e-17
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1958797947 194 HSQHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRR 229
Cdd:pfam05920   4 HLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 196-229 2.09e-11

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 58.79  E-value: 2.09e-11
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1958797947 196 QHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRR 229
Cdd:cd00086    21 KNPYPSREEREELAKELGLTERQVKIWFQNRRAK 54
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 196-229 3.54e-11

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 58.03  E-value: 3.54e-11
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1958797947  196 QHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRR 229
Cdd:smart00389  22 KNPYPSREEREELAKKLGLSERQVKVWFQNRRAK 55
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
4-75 4.66e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 38.46  E-value: 4.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958797947   4 HASPAPALTMMATQNVPPPPYQDSPQMTATAQPPSKAQaVHIAAPSATASTP------VPSAPIDPQAQLE-----ADKR 72
Cdd:PRK13042   29 NATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTK-VEAPQQTPNATTPsstkveTPQSPTTKQVPTEinpkfKDLR 107


                  ...
gi 1958797947  73 AVY 75
Cdd:PRK13042  108 AYY 110
 
Name Accession Description Interval E-value
Meis_PKNOX_N pfam16493
N-terminal of Homeobox Meis and PKNOX1; Meis_PKNOX_N is a family found at the N-terminus of ...
 96-181 5.59e-52

N-terminal of Homeobox Meis and PKNOX1; Meis_PKNOX_N is a family found at the N-terminus of Meis, Myeloid ecotropic viral integration site, transcription regulators and PKNOX1 regulators, PBX/knotted 1 homeobox 1, homeobox proteins.


Pssm-ID: 465140  Cd Length: 86  Bit Score: 167.14  E-value: 5.59e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958797947  96 GSECITSASFDVDIENFVHQQEQEHKPFFSDDPELDNLMVKAIQVLRIHLLELEKVNELCKDFCNRYITCLKTKMHSDNL 175
Cdd:pfam16493   1 GGDVCSSDSFDEDIAVFAKQIERAEKPIFSPNPELDNLMIKAIQVLRIHLLELEKVHELCDNFCHRYITCLKGKMPSDLV 80


                  ....*.
gi 1958797947 176 LRNDLG 181
Cdd:pfam16493  81 LDDREG 86
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 194-229 1.26e-17

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 75.24  E-value: 1.26e-17
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1958797947 194 HSQHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRR 229
Cdd:pfam05920   4 HLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 196-229 2.09e-11

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 58.79  E-value: 2.09e-11
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1958797947 196 QHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRR 229
Cdd:cd00086    21 KNPYPSREEREELAKELGLTERQVKIWFQNRRAK 54
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 196-229 3.54e-11

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 58.03  E-value: 3.54e-11
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1958797947  196 QHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRR 229
Cdd:smart00389  22 KNPYPSREEREELAKKLGLSERQVKVWFQNRRAK 55
Homeodomain pfam00046
Homeodomain;
196-229 5.61e-06

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 43.26  E-value: 5.61e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1958797947 196 QHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRR 229
Cdd:pfam00046  21 ENPYPSAEEREELAAQLGLTERQVKVWFQNRRAK 54
PRK13042 PRK13042
superantigen-like protein SSL4; Reviewed;
4-75 4.66e-03

superantigen-like protein SSL4; Reviewed;


Pssm-ID: 183854 [Multi-domain]  Cd Length: 291  Bit Score: 38.46  E-value: 4.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958797947   4 HASPAPALTMMATQNVPPPPYQDSPQMTATAQPPSKAQaVHIAAPSATASTP------VPSAPIDPQAQLE-----ADKR 72
Cdd:PRK13042   29 NATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTK-VEAPQQTPNATTPsstkveTPQSPTTKQVPTEinpkfKDLR 107


                  ...
gi 1958797947  73 AVY 75
Cdd:PRK13042  108 AYY 110
PLN02983 PLN02983
biotin carboxyl carrier protein of acetyl-CoA carboxylase
 3-66 6.39e-03

biotin carboxyl carrier protein of acetyl-CoA carboxylase


Pssm-ID: 215533 [Multi-domain]  Cd Length: 274  Bit Score: 37.90  E-value: 6.39e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958797947   3 QHASPAPALTMMatqnvPPPPYQDSPQMTATAQPpskaqavhiaAPSATASTPVPSAPIDPQAQ 66
Cdd:PLN02983  143 QPPPPAPVVMMQ-----PPPPHAMPPASPPAAQP----------APSAPASSPPPTPASPPPAK 191
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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