NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958798371|ref|XP_038938198|]
View 

protein PTHB1 isoform X1 [Rattus norvegicus]

Protein Classification

protein PTHB1( domain architecture ID 11236376)

protein PTHB1 is part of the BBSome complex that may function as a coat complex required for sorting of specific membrane proteins to the primary cilia

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
PHTB1_N pfam14727
PTHB1 N-terminus; This family includes the N-terminus of PTHB1 protein. This protein forms a ...
1-455 0e+00

PTHB1 N-terminus; This family includes the N-terminus of PTHB1 protein. This protein forms a part of the BBSome complex, which is required for ciliogenesis.


:

Pssm-ID: 464284  Cd Length: 416  Bit Score: 638.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371   1 MSLFKARDWWSTVLGEKEEFDQGCLCLADVDNSRNGQvlhgdqkrasdnqdrscwwflshhvsaanwtqhflcksNKIIV 80
Cdd:pfam14727   1 MSLFKAREWWSTTCGEGEEFDQGSLLVGNLDNEGQGS--------------------------------------DKIIV 42
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371  81 GSFMGYLRIFNPHPvktGGGPQAEDLLLEVHLRDPVLQVEVGKFVSGSEMLHLAVLHSRKLCVYSV--SGTLGNVEHGNQ 158
Cdd:pfam14727  43 GSLSGVLRIYSPSS---RGGFQPEDLLLETQLKEPILQVEVGKFVSGSRNLHLAVLHPRKLVVYTVeaLGSQGNVEHGNQ 119
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 159 YQIKLMYEHHLQRTACNMTYGPFGAVKGRDLICIQSMDGMLMVFEQESYAFGRFLPGSLLPGPLAYSPRTDSFITVSSCR 238
Cdd:pfam14727 120 YQLELIYEHNLQRTAYNMCVGPFGGVKGRDFICVQSMDGALSFFEQDSFAFGRFLPGFLLPGPLAYCQRTDSFVTANSSW 199
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 239 QVESYKYQVLAFATDADKKQEMEQqkLGSGKRLVVDWTLNIGEQALDICIIPLNQSASSVFVLGERNFFCLKDNGQIRFM 318
Cdd:pfam14727 200 ELECYKYQALASASESDSKGSDEN--KSSGKKLTPDWSFNLGEQALDINVVSFSESSSSIIVLGERSLFCLKDNGQLRFQ 277
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 319 KKLDCSPSCFLPYCSV----SEGTINTLVGNHNHMLHVYQDVTLKWATQLPHVPVAVRVGCLHDLKGVIVTLSDDGHLQC 394
Cdd:pfam14727 278 KRLDYVPSCFAPYRSLqknnPEGSINLLVATHTGTLLVYEDTTLKWAAQLPFVPVALAVANFNDLKGLIVSLSEDGTLSV 357
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958798371 395 SYLGTDPSLFQAPKVESRELNYDELDVELKELQKIIKdvKSQGVWPLTEQEDDLKVSAAVS 455
Cdd:pfam14727 358 SYLGTDPSLFQVPPLESREINYEEADEELKELQKIIK--EASASGDAIEAKEELTINVSIS 416
PHTB1_C pfam14728
PTHB1 C-terminus; This family includes the C-terminus of PTHB1 protein. This protein forms a ...
478-856 0e+00

PTHB1 C-terminus; This family includes the C-terminus of PTHB1 protein. This protein forms a part of the BBSome complex, which is required for ciliogenesis.


:

Pssm-ID: 464285  Cd Length: 376  Bit Score: 595.43  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 478 TVKITLQNQVVLQKVKLSVYVQPPLQLTCDQFTFDFVAPDMTSIVTFSVYLKKTYTPSELEGNAVVSYSRatdrnPDGIP 557
Cdd:pfam14728   1 TVKVTIKSRTTLENVQLSVQVPPPLVATPSTFVIENLDPSSSTELITSIFLSGLYIPSSLEVVVVASYTT-----PTGVP 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 558 RVIQCKFRLPLNLICLPGQPSKTASHKLTIDTNKSPVSLLGLFPDFANPSDDDQMNVMGFRLLGGSRVTLLASRTSQRYR 637
Cdd:pfam14728  76 RVVQCSANLPLKLVCRPCQPVKTATHKLTIDTNKSPVSLSELFPDFLPDEEGSTGNALGFQYLNGSVVTILASKTSQRYR 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 638 IQSERFEDLWLITNELILRLQDHFEKQGTKD-FACSFSGCVPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRR 716
Cdd:pfam14728 156 IQSDSFEALWLVLKELVRRLQAHFSKQGNKDaFKISFSGPLPLQEYFELIDTHFELRLEAEKLQELLSERASQFRAIQKR 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 717 LLTRFRDKTPAPLQHLDTLLDGTYKQVIALADAVQENQDRLLQSFAGLKSATHLLILLIRLWQRLSADQTAILEAAFLPL 796
Cdd:pfam14728 236 LLTRFKDKTPAPLQNLDTLLEGTYRQLIALADALEEAEAALRQAFNRLNSATQLLLLLLKLWQNLNEDQANILEAAFSPL 315
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958798371 797 QEDTQELGWEETVDAAVAHLLKTCLSKSSKEQALNLS-SQLSVPKDTSRLKKHITLLCDRL 856
Cdd:pfam14728 316 VSDSLDQGWEESTDAALSHLLRTCLSKSSKDQALPPNlSQLEIPKDTSKLKKHITLLCDRL 376
 
Name Accession Description Interval E-value
PHTB1_N pfam14727
PTHB1 N-terminus; This family includes the N-terminus of PTHB1 protein. This protein forms a ...
1-455 0e+00

PTHB1 N-terminus; This family includes the N-terminus of PTHB1 protein. This protein forms a part of the BBSome complex, which is required for ciliogenesis.


Pssm-ID: 464284  Cd Length: 416  Bit Score: 638.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371   1 MSLFKARDWWSTVLGEKEEFDQGCLCLADVDNSRNGQvlhgdqkrasdnqdrscwwflshhvsaanwtqhflcksNKIIV 80
Cdd:pfam14727   1 MSLFKAREWWSTTCGEGEEFDQGSLLVGNLDNEGQGS--------------------------------------DKIIV 42
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371  81 GSFMGYLRIFNPHPvktGGGPQAEDLLLEVHLRDPVLQVEVGKFVSGSEMLHLAVLHSRKLCVYSV--SGTLGNVEHGNQ 158
Cdd:pfam14727  43 GSLSGVLRIYSPSS---RGGFQPEDLLLETQLKEPILQVEVGKFVSGSRNLHLAVLHPRKLVVYTVeaLGSQGNVEHGNQ 119
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 159 YQIKLMYEHHLQRTACNMTYGPFGAVKGRDLICIQSMDGMLMVFEQESYAFGRFLPGSLLPGPLAYSPRTDSFITVSSCR 238
Cdd:pfam14727 120 YQLELIYEHNLQRTAYNMCVGPFGGVKGRDFICVQSMDGALSFFEQDSFAFGRFLPGFLLPGPLAYCQRTDSFVTANSSW 199
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 239 QVESYKYQVLAFATDADKKQEMEQqkLGSGKRLVVDWTLNIGEQALDICIIPLNQSASSVFVLGERNFFCLKDNGQIRFM 318
Cdd:pfam14727 200 ELECYKYQALASASESDSKGSDEN--KSSGKKLTPDWSFNLGEQALDINVVSFSESSSSIIVLGERSLFCLKDNGQLRFQ 277
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 319 KKLDCSPSCFLPYCSV----SEGTINTLVGNHNHMLHVYQDVTLKWATQLPHVPVAVRVGCLHDLKGVIVTLSDDGHLQC 394
Cdd:pfam14727 278 KRLDYVPSCFAPYRSLqknnPEGSINLLVATHTGTLLVYEDTTLKWAAQLPFVPVALAVANFNDLKGLIVSLSEDGTLSV 357
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958798371 395 SYLGTDPSLFQAPKVESRELNYDELDVELKELQKIIKdvKSQGVWPLTEQEDDLKVSAAVS 455
Cdd:pfam14727 358 SYLGTDPSLFQVPPLESREINYEEADEELKELQKIIK--EASASGDAIEAKEELTINVSIS 416
PHTB1_C pfam14728
PTHB1 C-terminus; This family includes the C-terminus of PTHB1 protein. This protein forms a ...
478-856 0e+00

PTHB1 C-terminus; This family includes the C-terminus of PTHB1 protein. This protein forms a part of the BBSome complex, which is required for ciliogenesis.


Pssm-ID: 464285  Cd Length: 376  Bit Score: 595.43  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 478 TVKITLQNQVVLQKVKLSVYVQPPLQLTCDQFTFDFVAPDMTSIVTFSVYLKKTYTPSELEGNAVVSYSRatdrnPDGIP 557
Cdd:pfam14728   1 TVKVTIKSRTTLENVQLSVQVPPPLVATPSTFVIENLDPSSSTELITSIFLSGLYIPSSLEVVVVASYTT-----PTGVP 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 558 RVIQCKFRLPLNLICLPGQPSKTASHKLTIDTNKSPVSLLGLFPDFANPSDDDQMNVMGFRLLGGSRVTLLASRTSQRYR 637
Cdd:pfam14728  76 RVVQCSANLPLKLVCRPCQPVKTATHKLTIDTNKSPVSLSELFPDFLPDEEGSTGNALGFQYLNGSVVTILASKTSQRYR 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 638 IQSERFEDLWLITNELILRLQDHFEKQGTKD-FACSFSGCVPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRR 716
Cdd:pfam14728 156 IQSDSFEALWLVLKELVRRLQAHFSKQGNKDaFKISFSGPLPLQEYFELIDTHFELRLEAEKLQELLSERASQFRAIQKR 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 717 LLTRFRDKTPAPLQHLDTLLDGTYKQVIALADAVQENQDRLLQSFAGLKSATHLLILLIRLWQRLSADQTAILEAAFLPL 796
Cdd:pfam14728 236 LLTRFKDKTPAPLQNLDTLLEGTYRQLIALADALEEAEAALRQAFNRLNSATQLLLLLLKLWQNLNEDQANILEAAFSPL 315
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958798371 797 QEDTQELGWEETVDAAVAHLLKTCLSKSSKEQALNLS-SQLSVPKDTSRLKKHITLLCDRL 856
Cdd:pfam14728 316 VSDSLDQGWEESTDAALSHLLRTCLSKSSKDQALPPNlSQLEIPKDTSKLKKHITLLCDRL 376
 
Name Accession Description Interval E-value
PHTB1_N pfam14727
PTHB1 N-terminus; This family includes the N-terminus of PTHB1 protein. This protein forms a ...
1-455 0e+00

PTHB1 N-terminus; This family includes the N-terminus of PTHB1 protein. This protein forms a part of the BBSome complex, which is required for ciliogenesis.


Pssm-ID: 464284  Cd Length: 416  Bit Score: 638.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371   1 MSLFKARDWWSTVLGEKEEFDQGCLCLADVDNSRNGQvlhgdqkrasdnqdrscwwflshhvsaanwtqhflcksNKIIV 80
Cdd:pfam14727   1 MSLFKAREWWSTTCGEGEEFDQGSLLVGNLDNEGQGS--------------------------------------DKIIV 42
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371  81 GSFMGYLRIFNPHPvktGGGPQAEDLLLEVHLRDPVLQVEVGKFVSGSEMLHLAVLHSRKLCVYSV--SGTLGNVEHGNQ 158
Cdd:pfam14727  43 GSLSGVLRIYSPSS---RGGFQPEDLLLETQLKEPILQVEVGKFVSGSRNLHLAVLHPRKLVVYTVeaLGSQGNVEHGNQ 119
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 159 YQIKLMYEHHLQRTACNMTYGPFGAVKGRDLICIQSMDGMLMVFEQESYAFGRFLPGSLLPGPLAYSPRTDSFITVSSCR 238
Cdd:pfam14727 120 YQLELIYEHNLQRTAYNMCVGPFGGVKGRDFICVQSMDGALSFFEQDSFAFGRFLPGFLLPGPLAYCQRTDSFVTANSSW 199
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 239 QVESYKYQVLAFATDADKKQEMEQqkLGSGKRLVVDWTLNIGEQALDICIIPLNQSASSVFVLGERNFFCLKDNGQIRFM 318
Cdd:pfam14727 200 ELECYKYQALASASESDSKGSDEN--KSSGKKLTPDWSFNLGEQALDINVVSFSESSSSIIVLGERSLFCLKDNGQLRFQ 277
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 319 KKLDCSPSCFLPYCSV----SEGTINTLVGNHNHMLHVYQDVTLKWATQLPHVPVAVRVGCLHDLKGVIVTLSDDGHLQC 394
Cdd:pfam14727 278 KRLDYVPSCFAPYRSLqknnPEGSINLLVATHTGTLLVYEDTTLKWAAQLPFVPVALAVANFNDLKGLIVSLSEDGTLSV 357
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958798371 395 SYLGTDPSLFQAPKVESRELNYDELDVELKELQKIIKdvKSQGVWPLTEQEDDLKVSAAVS 455
Cdd:pfam14727 358 SYLGTDPSLFQVPPLESREINYEEADEELKELQKIIK--EASASGDAIEAKEELTINVSIS 416
PHTB1_C pfam14728
PTHB1 C-terminus; This family includes the C-terminus of PTHB1 protein. This protein forms a ...
478-856 0e+00

PTHB1 C-terminus; This family includes the C-terminus of PTHB1 protein. This protein forms a part of the BBSome complex, which is required for ciliogenesis.


Pssm-ID: 464285  Cd Length: 376  Bit Score: 595.43  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 478 TVKITLQNQVVLQKVKLSVYVQPPLQLTCDQFTFDFVAPDMTSIVTFSVYLKKTYTPSELEGNAVVSYSRatdrnPDGIP 557
Cdd:pfam14728   1 TVKVTIKSRTTLENVQLSVQVPPPLVATPSTFVIENLDPSSSTELITSIFLSGLYIPSSLEVVVVASYTT-----PTGVP 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 558 RVIQCKFRLPLNLICLPGQPSKTASHKLTIDTNKSPVSLLGLFPDFANPSDDDQMNVMGFRLLGGSRVTLLASRTSQRYR 637
Cdd:pfam14728  76 RVVQCSANLPLKLVCRPCQPVKTATHKLTIDTNKSPVSLSELFPDFLPDEEGSTGNALGFQYLNGSVVTILASKTSQRYR 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 638 IQSERFEDLWLITNELILRLQDHFEKQGTKD-FACSFSGCVPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRR 716
Cdd:pfam14728 156 IQSDSFEALWLVLKELVRRLQAHFSKQGNKDaFKISFSGPLPLQEYFELIDTHFELRLEAEKLQELLSERASQFRAIQKR 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958798371 717 LLTRFRDKTPAPLQHLDTLLDGTYKQVIALADAVQENQDRLLQSFAGLKSATHLLILLIRLWQRLSADQTAILEAAFLPL 796
Cdd:pfam14728 236 LLTRFKDKTPAPLQNLDTLLEGTYRQLIALADALEEAEAALRQAFNRLNSATQLLLLLLKLWQNLNEDQANILEAAFSPL 315
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958798371 797 QEDTQELGWEETVDAAVAHLLKTCLSKSSKEQALNLS-SQLSVPKDTSRLKKHITLLCDRL 856
Cdd:pfam14728 316 VSDSLDQGWEESTDAALSHLLRTCLSKSSKDQALPPNlSQLEIPKDTSKLKKHITLLCDRL 376
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH