|
Name |
Accession |
Description |
Interval |
E-value |
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
209-1654 |
0e+00 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 808.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 209 GFLAIQHAVDKAIMLHHAPKAAldmfkNLQVSVQRFPSGSHIQDPFLVILQNEFPLLLMLSFICVELIITNSILLEKERK 288
Cdd:TIGR01257 607 GFAYLQDMVEQGITRSQMQAEP-----PVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELR 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 289 QKEYMYLMGLENWLHWVAWFITFFLSALVTVSGMTVLFctkMNGvAVFRNSNTTLIFIFLMCFAIATIFFAFMMSTFFQR 368
Cdd:TIGR01257 682 LKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFI---MHG-RILHYSDPFILFLFLLAFSTATIMQCFLLSTFFSK 757
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 369 AHVGTVIGGIVFFFTYLPYMyITFSYHQR-TYSQKILSCLFSNVAMAMGVRFISLFEAEGTGIQWRNMGS--VWGD-FSF 444
Cdd:TIGR01257 758 ASLAAACSGVIYFTLYLPHI-LCFAWQDRmTADLKTAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNspLEGDeFSF 836
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 445 TQVLVMLLLDSFLYCLVAFLVESLFPRKIGMPKSWYIFAKCPLW---------RKKSFPVIPPLLV-IGDPEKTS--KGD 512
Cdd:TIGR01257 837 LLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWlggegcstrEERALEKTEPLTEeMEDPEHPEgiNDS 916
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 513 FLQDEPAGHINAIEIQHLYKVFY-TGRSkciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCE 591
Cdd:TIGR01257 917 FFERELPGLVPGVCVKNLVKIFEpSGRP---AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKD 993
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 592 ISKDMVRIRKNVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIG 671
Cdd:TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVA 1073
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 672 IALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFLKQKYGA 751
Cdd:TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGT 1153
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 752 GYYMTIIKT--------------------------PLC------------DTEKLAKVIYHHIPNAILESRIGEEMIFTL 793
Cdd:TIGR01257 1154 GFYLTLVRKmkniqsqrggcegtcsctskgfstrcPARvdeitpeqvldgDVNELMDLVYHHVPEAKLVECIGQELIFLL 1233
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 794 PKKAMPR--FEALFADLEQRQTELGISTFGASVTTMEEVFIRVCKLADPSTNVL---TEKRPS--LRH---LPRNH--RV 861
Cdd:TIGR01257 1234 PNKNFKQraYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDADSGSLFAggaQQKRENanLRHpcsGPTEKagQT 1313
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 862 PVDRIKCLHSRIFSLSSDQP--------IRLNTGFSLLCQQFYAMLLKKVAFSRRNWMLVLSvQILLPLVIIMLSLsFFN 933
Cdd:TIGR01257 1314 PQASHTCSPGQPAAHPEGQPppepedpgVPLNTGARLILQHVQALLVKRFQHTIRSHKDFLA-QIVLPATFVFLAL-MLS 1391
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 934 FKLRKLDNVPlELTLQ--TYGQTIVPFFIAE--NSRLD-----------------------------------PQLSDNF 974
Cdd:TIGR01257 1392 IIIPPFGEYP-ALTLHpwMYGQQYTFFSMDEpnSEHLEvladvllnkpgfgnrclkeewlpeypcgnstpwktPSVSPNI 1470
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 975 VKMLV-----------------------------AAGQV--PLRIQGSVE-----------NFLLK-------------- 998
Cdd:TIGR01257 1471 THLFQkqkwtaahpspscrcstrekltmlpecpeGAGGLppPQRTQRSTEilqdltdrnisDFLVKtypalirsslkskf 1550
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 999 --------------KAKEAP----------EDFDKLYVVAAS-------------FEDVNDHTTVKALFNNQAYHSPSLA 1041
Cdd:TIGR01257 1551 wvneqryggisiggKLPAIPitgealvgflSDLGQMMNVSGGpvtreaskempdfLKHLETEDNIKVWFNNKGWHALVSF 1630
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1042 LALVDNVLFKL-----LSGANASITTTNYPQPQTAMELSETILYQGPKGHYLVVNFLFGIAFLSSSFSILTVGEKSIKSK 1116
Cdd:TIGR01257 1631 LNVAHNAILRAslpkdRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQERVNKAK 1710
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1117 NLQFLSGVSMAAFWLSALLWDLISFLVPTLLLVQPPQQPrpqervsNRRSKRKQSQLP----------WA---------- 1176
Cdd:TIGR01257 1711 HLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGF-------QKKAYTSPENLPalvallmlygWAvipmmypasf 1783
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1177 ----EHEGGRTTQSHSLYLGYTelSDTLDHIFLIFPGHCLGMAFSNLYYNFEI--KKFCNAKNLSDIDCNDVLEGYVVQ- 1249
Cdd:TIGR01257 1784 lfdvPSTAYVALSCANLFIGIN--SSAITFVLELFENNRTLLRFNAMLRKLLIvfPHFCLGRGLIDLALSQAVTDVYAQf 1861
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1250 -----KNIYAWESlgIGKYLTALAILGPVYITLLFLTEANAFcalkarLSGFFCKQKLRMLLNvtgaEDEDVLEEAENIk 1324
Cdd:TIGR01257 1862 geehsANPFQWDL--IGKNLVAMAVEGVVYFLLTLLIQHHFF------LSRWIAEPAKEPIFD----EDDDVAEERQRI- 1928
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1325 yhLDTLIKKSPLVVKELSKVYK-EKVPllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIR 1403
Cdd:TIGR01257 1929 --ISGGNKTDILRLNELTKVYSgTSSP--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL 2004
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1404 TDMAKVQQWIGYCPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIA 1483
Cdd:TIGR01257 2005 TNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIA 2084
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1484 LLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSRFGSG 1563
Cdd:TIGR01257 2085 LIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDG 2164
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1564 YSLQAKVRRKWQQQM--LEEFKAFVDLTFPGSSLEDEHQSMVQYYLPGQNLswAKVFGIMEQAKKDYVLEDYSISQLSLE 1641
Cdd:TIGR01257 2165 YIVTMKIKSPKDDLLpdLNPVEQFFQGNFPGSVQRERHYNMLQFQVSSSSL--ARIFQLLISHKDSLLIEEYSVTQTTLD 2242
|
1690
....*....|...
gi 1958656855 1642 DIFLSFTRPVPDT 1654
Cdd:TIGR01257 2243 QVFVNFAKQQTET 2255
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
525-746 |
1.59e-105 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 335.63 E-value: 1.59e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVG 604
Cdd:cd03263 1 LQIRNLTKTY--KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 685 EPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFLK 746
Cdd:cd03263 159 EPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
1336-1557 |
1.32e-97 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 313.29 E-value: 1.32e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKvPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQQWIGY 1415
Cdd:cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 CPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDE 1495
Cdd:cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 1496 PSTGMDPVARRLVWDAVGRVReSGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLK 1557
Cdd:cd03263 160 PTSGLDPASRRAIWDLILEVR-KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
525-749 |
6.33e-78 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 257.68 E-value: 6.33e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVG 604
Cdd:COG1131 1 IEVRGLTKRY--GDKT--ALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:COG1131 77 YVPQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILD 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 685 EPTSGMDSSSRRAIWDLLQQQKGD-RTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFLKQKY 749
Cdd:COG1131 157 EPTSGLDPEARRELWELLRELAAEgKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARL 222
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
1336-1589 |
9.47e-73 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 242.66 E-value: 9.47e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQQWIGY 1415
Cdd:COG1131 1 IEVRGLTKRYGDKT---ALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 CPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDE 1495
Cdd:COG1131 78 VPQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1496 PSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSRFgsgyslqakvrrkwq 1575
Cdd:COG1131 158 PTSGLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARL--------------- 222
|
250
....*....|....
gi 1958656855 1576 qqmLEEfkAFVDLT 1589
Cdd:COG1131 223 ---LED--VFLELT 231
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
525-746 |
4.36e-61 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 208.76 E-value: 4.36e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRskciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVG 604
Cdd:cd03265 1 IEVENLVKKYGDFE----AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 685 EPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFLK 746
Cdd:cd03265 157 EPTIGLDPQTRAHVWEYIEklKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
525-736 |
6.20e-60 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 203.40 E-value: 6.20e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytgrSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVG 604
Cdd:cd03230 1 IEVRNLSKRY----GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDILFDNFTVTDHLYfygqlkglshqdchekieemlhtlgledkrnsrskfLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:cd03230 77 YLPEEPSLYENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLILD 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 685 EPTSGMDSSSRRAIWDLLQQQKGD-RTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:cd03230 121 EPTSGLDPESRREFWELLRELKKEgKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
525-750 |
3.03e-58 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 201.62 E-value: 3.03e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytgrSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVG 604
Cdd:COG4555 2 IEVENLSKKY----GKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:COG4555 78 VLPDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLD 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 685 EPTSGMDSSSRRAIWDLLQQQKG-DRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFLKQKYG 750
Cdd:COG4555 158 EPTNGLDVMARRLLREILRALKKeGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIG 224
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
1336-1557 |
3.59e-58 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 200.29 E-value: 3.59e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEkvpLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQQWIGY 1415
Cdd:cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 CPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDE 1495
Cdd:cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 1496 PSTGMDPVARRLVWDAVGR-VRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLK 1557
Cdd:cd03265 158 PTIGLDPQTRAHVWEYIEKlKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
1343-1648 |
2.08e-57 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 201.46 E-value: 2.08e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1343 KVYKEkvpLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQQWIGYCPEFDAL 1422
Cdd:TIGR01188 1 KVYGD---FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1423 LNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDP 1502
Cdd:TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1503 VARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSRFGSgySLQAKVRRKWQQQMLEEF 1582
Cdd:TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGK--DTLESRPRDIQSLKVEVS 235
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 1583 KAFVDLTFPGSSLEDEHQSMVQYYLPGQNLSwAKVFGIMEQAKKD-YVLEDYSISQLSLEDIFLSFT 1648
Cdd:TIGR01188 236 MLIAELGETGLGLLAVTVDSDRIKILVPDGD-ETVPEIVEAAIRNgIRIRSISTERPSLDDVFLKLT 301
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
543-834 |
5.00e-57 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 200.31 E-value: 5.00e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVGWCPQHDILFDNFTVTDHL 622
Cdd:TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 623 YFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLL 702
Cdd:TIGR01188 88 EMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYI 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 703 QQQKG-DRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFLKQKYGAgyymTIIKTPLCDTEKLaKVIYHHIPNAIL 781
Cdd:TIGR01188 168 RALKEeGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGK----DTLESRPRDIQSL-KVEVSMLIAELG 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 782 ESRIGEEMIFTL-----------PKKAMPRFEALfadleqRQTELGISTFGASVTTMEEVFIRV 834
Cdd:TIGR01188 243 ETGLGLLAVTVDsdrikilvpdgDETVPEIVEAA------IRNGIRIRSISTERPSLDDVFLKL 300
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1336-1561 |
7.63e-56 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 194.69 E-value: 7.63e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQQWIGY 1415
Cdd:COG4555 2 IEVENLSKKYGKVP---ALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 CPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDE 1495
Cdd:COG4555 79 LPDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 1496 PSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSRFG 1561
Cdd:COG4555 159 PTNGLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIG 224
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
525-740 |
1.60e-54 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 189.71 E-value: 1.60e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytgrSKCIAVKDLSMNLYKGqITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVG 604
Cdd:cd03264 1 LQLENLTKRY----GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 685 EPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCG 740
Cdd:cd03264 156 EPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
1336-1547 |
5.34e-53 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 183.75 E-value: 5.34e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQQWIGY 1415
Cdd:cd03230 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 CPEFDALLNFMTGREMLvmharirgipechiktcvdmilenllmcvyadklvkTYSDGNKRVLSTAIALLGEPTVILLDE 1495
Cdd:cd03230 78 LPEEPSLYENLTVRENL------------------------------------KLSGGMKQRLALAQALLHDPELLILDE 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 1496 PSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQF 1547
Cdd:cd03230 122 PTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
525-742 |
1.56e-49 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 175.98 E-value: 1.56e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYkVFYTGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS-KDMVRIRKNV 603
Cdd:COG1122 1 IELENLS-FSYPGGTP--ALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITkKNLRELRRKV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GwcpqhdILFDN-----F--TVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIA 676
Cdd:COG1122 78 G------LVFQNpddqlFapTVEEDVAFGPENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAM 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 677 GSKVLILDEPTSGMDSSSRRAIWDLLQQ-QKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:COG1122 152 EPEVLVLDEPTAGLDPRGRRELLELLKRlNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTP 218
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
525-736 |
1.76e-49 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 175.25 E-value: 1.76e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVG 604
Cdd:cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 685 EPTSGMDSSSRRAIWDLLQQQK-GDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:cd03266 162 EPTTGLDVMATRALREFIRQLRaLGKCILFSTHIMQEVERLCDRVVVLHRGRV 214
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
524-834 |
1.39e-46 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 169.90 E-value: 1.39e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYKVFytGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDmvrIRKNV 603
Cdd:COG4152 1 MLELKGLTKRF--GDKT--AVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDPE---DRRRI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLIL 683
Cdd:COG4152 74 GYLPEERGLYPKMKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLIL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 684 DEPTSGMDSSSRRAIWDLLQQQK-GDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFLKQKYGAGYYmtIIKTPL 762
Cdd:COG4152 154 DEPFSGLDPVNVELLKDVIRELAaKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFGRNTL--RLEADG 231
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 763 cDTEKLAKviyhhIPNAILESRIGEEMIFTLPKKAMPrfEALFADLEQRQTelgISTFGASVTTMEEVFIRV 834
Cdd:COG4152 232 -DAGWLRA-----LPGVTVVEEDGDGAELKLEDGADA--QELLRALLARGP---VREFEEVRPSLNEIFIEV 292
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
537-735 |
1.06e-44 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 161.48 E-value: 1.06e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 537 GRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVR-IRKNVGwcpqhdILFDN 615
Cdd:cd03225 10 PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKeLRRKVG------LVFQN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 616 F-------TVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTS 688
Cdd:cd03225 84 PddqffgpTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958656855 689 GMDSSSRRAIWDLLQQ-QKGDRTVLLTTHFMDEADLLGDRIAILAKGE 735
Cdd:cd03225 164 GLDPAGRRELLELLKKlKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
525-728 |
5.11e-43 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 156.49 E-value: 5.11e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVfytgRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVG 604
Cdd:COG4133 3 LEAENLSCR----RGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDILFDNFTVTDHLYFYGQLKGLSHQDchEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:COG4133 79 YLGHADGLKPELTVRENLRFWAALYGLRADR--EAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLD 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1958656855 685 EPTSGMDSSSRRAIWDLLQQQKGD-RTVLLTTHfmDEADLLGDRI 728
Cdd:COG4133 157 EPFTALDAAGVALLAELIAAHLARgGAVLLTTH--QPLELAAARV 199
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
1336-1546 |
7.40e-43 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 155.84 E-value: 7.40e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKvplLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQQwIGY 1415
Cdd:cd03268 1 LKTNDLTKTYGKK---RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRR-IGA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 CPEFDALLNFMTGREMLVMHARIRGIPechiKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDE 1495
Cdd:cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDE 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 1496 PSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:cd03268 153 PTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGK 203
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
525-735 |
1.57e-42 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 155.13 E-value: 1.57e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDmvrIRKNVG 604
Cdd:cd03269 1 LEVENVTKRF--GRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIA---ARNRIG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 685 EPTSGMDSSSRRAIWDLLQQQKGD-RTVLLTTHFMDEADLLGDRIAILAKGE 735
Cdd:cd03269 154 EPFSGLDPVNVELLKDVIRELARAgKTVILSTHQMELVEELCDRVLLLNKGR 205
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
524-734 |
2.70e-42 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 156.40 E-value: 2.70e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISkdmvRIRKNV 603
Cdd:COG1116 7 ALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVT----GPGPDR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLIL 683
Cdd:COG1116 83 GVVFQEPALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLLM 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 684 DEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAKG 734
Cdd:COG1116 163 DEPFGALDALTRERLQDELLRlwQETGKTVLFVTHDVDEAVFLADRVVVLSAR 215
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
525-736 |
2.77e-42 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 155.05 E-value: 2.77e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS----KDMVRIR 600
Cdd:cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTllsgKELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 KNVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKV 680
Cdd:cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 681 LILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:cd03258 162 LLCDEATSALDPETTQSILALLRdiNRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1336-1545 |
5.32e-42 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 154.06 E-value: 5.32e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYK-EKVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQQWIG 1414
Cdd:cd03266 2 ITADALTKRFRdVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1415 YCPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLD 1494
Cdd:cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 1495 EPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQG 1545
Cdd:cd03266 162 EPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRG 212
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
525-733 |
2.43e-41 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 151.86 E-value: 2.43e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGceisKDMVRIRKNVG 604
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDG----EPVTGPGPDRG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 685 EPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAK 733
Cdd:cd03293 157 EPFSALDALTREQLQEELLDiwRETGKTVLLVTHDIDEAVFLADRVVVLSA 207
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
1336-1546 |
2.48e-41 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 151.66 E-value: 2.48e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDmakVQQWIGY 1415
Cdd:cd03269 1 LEVENVTKRFGRVT---ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIA---ARNRIGY 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 CPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDE 1495
Cdd:cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 1496 PSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:cd03269 155 PFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGR 205
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
544-688 |
2.84e-41 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 149.34 E-value: 2.84e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRI-RKNVGWCPQHDILFDNFTVTDHL 622
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSlRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 623 YFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKF----LSGGIKRKLAIGIALIAGSKVLILDEPTS 688
Cdd:pfam00005 81 RLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVGErpgtLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1336-1644 |
5.47e-41 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 153.73 E-value: 5.47e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRtdmAKVQQWIGY 1415
Cdd:COG4152 2 LELKGLTKRFGDKT---AVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLD---PEDRRRIGY 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 CPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDE 1495
Cdd:COG4152 76 LPEERGLYPKMKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1496 PSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSRFGSG-YSLQAKVRRKW 1574
Cdd:COG4152 156 PFSGLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFGRNtLRLEADGDAGW 235
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 1575 qqqmLEEFKAFVDLTFPGSS----LEDEHQSMvqyylpgqnlswakvfGIMEQAKKDYVLEDYSISQLSLEDIF 1644
Cdd:COG4152 236 ----LRALPGVTVVEEDGDGaelkLEDGADAQ----------------ELLRALLARGPVREFEEVRPSLNEIF 289
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
1336-1548 |
3.46e-40 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 148.50 E-value: 3.46e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVkEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQQWIGY 1415
Cdd:cd03264 1 LQLENLTKRYGKKR---ALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 CP-EFDALLNFmTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLD 1494
Cdd:cd03264 77 LPqEFGVYPNF-TVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1495 EPSTGMDPVARRlvwdavgRVRE------SGKTIVITSHSMEECEALCTRLAIMVQGQFK 1548
Cdd:cd03264 156 EPTAGLDPEERI-------RFRNllselgEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
525-736 |
3.60e-40 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 148.41 E-value: 3.60e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK----DMVRIR 600
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKlsekELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 -KNVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSK 679
Cdd:cd03255 81 rRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 680 VLILDEPTSGMDSSSRRAIWDLLQQQKGDR--TVLLTTHFMDEADlLGDRIAILAKGEL 736
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAgtTIVVVTHDPELAE-YADRIIELRDGKI 218
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
524-743 |
1.32e-39 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 147.93 E-value: 1.32e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYkVFYTGRskcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDmvriRKNV 603
Cdd:COG1121 6 AIELENLT-VSYGGR---PVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRA----RRRI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILFDNF--TVTD--HLYFYGQ---LKGLSHQDcHEKIEEMLHTLGLEDKRNSR-SKfLSGGIKRKLAIGIALI 675
Cdd:COG1121 78 GYVPQRAEVDWDFpiTVRDvvLMGRYGRrglFRRPSRAD-REAVDEALERVGLEDLADRPiGE-LSGGQQQRVLLARALA 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 676 AGSKVLILDEPTSGMDSSSRRAIWDLLQQ-QKGDRTVLLTTHFMDEADLLGDRIAILAKGeLQCCGTPS 743
Cdd:COG1121 156 QDPDLLLLDEPFAGVDAATEEALYELLRElRREGKTILVVTHDLGAVREYFDRVLLLNRG-LVAHGPPE 223
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1334-1556 |
1.53e-39 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 149.96 E-value: 1.53e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1334 SPLVVKELSKVYKEKvplLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQQWI 1413
Cdd:PRK13537 6 APIDFRNVEKRYGDK---LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1414 GYCPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILL 1493
Cdd:PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 1494 DEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:PRK13537 163 DEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
525-740 |
3.08e-39 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 145.74 E-value: 3.08e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytgrSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRiRKNVG 604
Cdd:cd03259 1 LELKGLSKTY----GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE-RRNIG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 685 EPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCG 740
Cdd:cd03259 156 EPLSALDAKLREELREELKelQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
524-743 |
3.54e-39 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 147.11 E-value: 3.54e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYkVFYTGRskcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKN 602
Cdd:COG1120 1 MLEAENLS-VGYGGR---PVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASlSRRELARR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 603 VGWCPQHDILFDNFTVTD--------HLyfyGQLKGLSHQDcHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIAL 674
Cdd:COG1120 77 IAYVPQEPPAPFGLTVRElvalgrypHL---GLFGRPSAED-REAVEEALERTGLEHLADRPVDELSGGERQRVLIARAL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 675 IAGSKVLILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPS 743
Cdd:COG1120 153 AQEPPLLLLDEPTSHLDLAHQLEVLELLRRlaRERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPE 223
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
542-734 |
3.81e-39 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 149.98 E-value: 3.81e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 542 IAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVGWCPQHDILFDNFTVTDH 621
Cdd:PRK13536 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVREN 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 622 LYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDL 701
Cdd:PRK13536 135 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER 214
|
170 180 190
....*....|....*....|....*....|....*
gi 1958656855 702 LQQ--QKGdRTVLLTTHFMDEADLLGDRIAILAKG 734
Cdd:PRK13536 215 LRSllARG-KTILLTTHFMEEAERLCDRLCVLEAG 248
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
524-745 |
5.33e-39 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 148.41 E-value: 5.33e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYKVFytgrSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNV 603
Cdd:PRK13537 7 PIDFRNVEKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLIL 683
Cdd:PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 684 DEPTSGMDSSSRRAIWDLLQQ--QKGdRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFL 745
Cdd:PRK13537 163 DEPTTGLDPQARHLMWERLRSllARG-KTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
525-747 |
3.06e-38 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 143.80 E-value: 3.06e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytgRSKCIaVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS----KDMVRIR 600
Cdd:cd03261 1 IELRGLTKSF---GGRTV-LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISglseAELYRLR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 KNVGWCPQHDILFDNFTVTDH----LYFYGQlkgLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIA 676
Cdd:cd03261 77 RRMGMLFQSGALFDSLTVFENvafpLREHTR---LSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 677 GSKVLILDEPTSGMDSSSRRAIWDL---LQQQKGDrTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFLKQ 747
Cdd:cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLirsLKKELGL-TSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
525-736 |
3.17e-38 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 142.74 E-value: 3.17e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRskciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDmVRIRKNVG 604
Cdd:cd03268 1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRRIG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDILFDNFTVTDHLYFYGQLKGLShqdcHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 685 EPTSGMDSSSRRAIWDLLQ--QQKGdRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:cd03268 152 EPTNGLDPDGIKELRELILslRDQG-ITVLISSHLLSEIQKVADRIGIINKGKL 204
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1341-1556 |
7.62e-38 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 146.13 E-value: 7.62e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1341 LSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI--RTDMAKVQqwIGYCPE 1418
Cdd:PRK13536 47 VSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVpaRARLARAR--IGVVPQ 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1419 FDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPST 1498
Cdd:PRK13536 122 FDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 1499 GMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:PRK13536 202 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
523-747 |
1.75e-37 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 141.66 E-value: 1.75e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 523 NAIEIQHLYKVFytGrSKCIaVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS----KDMVR 598
Cdd:COG1127 4 PMIEVRNLTKSF--G-DRVV-LDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITglseKELYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 599 IRKNVGWCPQHDILFDNFTVTDHLYFY-GQLKGLSHQDCHEKIEEMLHTLGLEDKRNsrsKF---LSGGIKRKLAIGIAL 674
Cdd:COG1127 80 LRRRIGMLFQGGALFDSLTVFENVAFPlREHTDLSEAEIRELVLEKLELVGLPGAAD---KMpseLSGGMRKRVALARAL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 675 IAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDR--TVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFLKQ 747
Cdd:COG1127 157 ALDPEILLYDEPTAGLDPITSAVIDELIRELRDELglTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLA 231
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
524-743 |
2.16e-37 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 142.44 E-value: 2.16e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYkvFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVR-IRKN 602
Cdd:PRK13632 7 MIKVENVS--FSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKeIRKK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 603 VGwcpqhdILFDN----F---TVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALI 675
Cdd:PRK13632 85 IG------IIFQNpdnqFigaTVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLA 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 676 AGSKVLILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHFMDEAdLLGDRIAILAKGELQCCGTPS 743
Cdd:PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVdlRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPK 227
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
505-743 |
3.23e-37 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 148.51 E-value: 3.23e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 505 PEKTSKGDFLQDEPAGHINAIEIQHLYKVFYTGRSKCI-AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKG 583
Cdd:COG1123 241 PRLGAARGRAAPAAAAAEPLLEVRNLSKRYPVRGKGGVrAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSG 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 584 HAYIHGCEIS----KDMVRIRKNVGWCPQH--DILFDNFTVTDHLYF-YGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSR 656
Cdd:COG1123 321 SILFDGKDLTklsrRSLRELRRRVQMVFQDpySSLNPRMTVGDIIAEpLRLHGLLSRAERRERVAELLERVGLPPDLADR 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 657 SKF-LSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHFMDEADLLGDRIAILAK 733
Cdd:COG1123 401 YPHeLSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRdlQRELGLTYLFISHDLAVVRYIADRVAVMYD 480
|
250
....*....|
gi 1958656855 734 GELQCCGTPS 743
Cdd:COG1123 481 GRIVEDGPTE 490
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
525-742 |
3.71e-37 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 141.63 E-value: 3.71e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYT-----------GRSK---------CIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGH 584
Cdd:cd03294 1 IKIKGLYKIFGKnpqkafkllakGKSKeeilkktgqTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 585 AYIHGCEIS----KDMVRIR-KNVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKF 659
Cdd:cd03294 81 VLIDGQDIAamsrKELRELRrKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 660 LSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWD-LLQ-QQKGDRTVLLTTHFMDEADLLGDRIAILAKGELQ 737
Cdd:cd03294 161 LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDeLLRlQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV 240
|
....*
gi 1958656855 738 CCGTP 742
Cdd:cd03294 241 QVGTP 245
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
525-743 |
5.07e-37 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 140.26 E-value: 5.07e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytGrsKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMV--RIRKN 602
Cdd:cd03219 1 LEVRGLTKRF--G--GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPheIARLG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 603 VGWCPQHDILFDNFTVTD----------HLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGI 672
Cdd:cd03219 77 IGRTFQIPRLFPELTVLEnvmvaaqartGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIAR 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 673 ALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQ-QKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPS 743
Cdd:cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRElRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPD 228
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
525-742 |
7.71e-37 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 139.74 E-value: 7.71e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKvFYTGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNV 603
Cdd:cd03295 1 IEFENVTK-RYGGGKK--AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREqDPVELRRKI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDK--RNSRSKFLSGGIKRKLAIGIALIAGSKVL 681
Cdd:cd03295 78 GYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAefADRYPHELSGGQQQRVGVARALAADPPLL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 682 ILDEPTSGMDSSSRRAIWDL---LQQQKGdRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:cd03295 158 LMDEPFGALDPITRDQLQEEfkrLQQELG-KTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTP 220
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
526-735 |
7.93e-37 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 136.61 E-value: 7.93e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 526 EIQHLYKVFYTGRskciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNVG 604
Cdd:cd00267 1 EIENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKlPLEELRRRIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQhdilfdnftvtdhlyfygqlkglshqdchekieemlhtlgledkrnsrskfLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:cd00267 77 YVPQ---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLD 105
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 685 EPTSGMDSSSRRAIWDLLQQ-QKGDRTVLLTTHFMDEADLLGDRIAILAKGE 735
Cdd:cd00267 106 EPTSGLDPASRERLLELLRElAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
525-736 |
9.79e-37 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 138.41 E-value: 9.79e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLykvFYTGRSKCIaVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNV 603
Cdd:COG4619 1 LELEGL---SFRVGGKPI-LSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAmPPPEWRRQV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILFDNfTVTDHLYFYGQLKGLSHQDchEKIEEMLHTLGLE----DKRNSRskfLSGGIKRKLAIGIALIAGSK 679
Cdd:COG4619 77 AYVPQEPALWGG-TVRDNLPFPFQLRERKFDR--ERALELLERLGLPpdilDKPVER---LSGGERQRLALIRALLLQPD 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 680 VLILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:COG4619 151 VLLLDEPTSALDPENTRRVEELLREylAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
523-736 |
1.39e-36 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 138.64 E-value: 1.39e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 523 NAIEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS----KDMVR 598
Cdd:COG1136 3 PLLELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISslseRELAR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 599 IR-KNVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAG 677
Cdd:COG1136 83 LRrRHIGFVFQFFNLLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNR 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 678 SKVLILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHfmdEADLLG--DRIAILAKGEL 736
Cdd:COG1136 163 PKLILADEPTGNLDSKTGEEVLELLRElnRELGTTIVMVTH---DPELAAraDRVIRLRDGRI 222
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
543-742 |
2.94e-35 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 135.94 E-value: 2.94e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISkdmvrirknvGWcPQHDI----------- 611
Cdd:COG0411 19 AVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDIT----------GL-PPHRIarlgiartfqn 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 612 --LFDNFTVTDHL----------YFYGQLKGL-----SHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIAL 674
Cdd:COG0411 88 prLFPELTVLENVlvaaharlgrGLLAALLRLprarrEEREARERAEELLERVGLADRADEPAGNLSYGQQRRLEIARAL 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 675 IAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDR--TVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:COG0411 168 ATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERgiTILLIEHDMDLVMGLADRIVVLDFGRVIAEGTP 237
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
525-749 |
3.87e-35 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 134.59 E-value: 3.87e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytgRSKCIaVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMV--RIRKN 602
Cdd:cd03218 1 LRAENLSKRY---GKRKV-VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMhkRARLG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 603 VGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLI 682
Cdd:cd03218 77 IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 683 LDEPTSGMDSSSRRAIWDLLQQQKgDRT--VLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFL------KQKY 749
Cdd:cd03218 157 LDEPFAGVDPIAVQDIQKIIKILK-DRGigVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIaanelvRKVY 230
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
524-742 |
7.90e-35 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 137.54 E-value: 7.90e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYKVFytGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGceisKDMVRI---R 600
Cdd:COG3842 5 ALELENVSKRY--GDVT--ALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDG----RDVTGLppeK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 KNVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKV 680
Cdd:COG3842 77 RNVGMVFQDYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRV 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 681 LILDEPTSGMDSSSRRAIWDLL---QQQKGdRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:COG3842 157 LLLDEPLSALDAKLREEMREELrrlQRELG-ITFIYVTHDQEEALALADRIAVMNDGRIEQVGTP 220
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
524-742 |
1.04e-34 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 140.81 E-value: 1.04e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYKVFYTGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPS---KGHAYIHGCEISKDMVRIR 600
Cdd:COG1123 4 LLEVRDLSVRYPGGDVP--AVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 -KNVGWCPQH-DILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGS 678
Cdd:COG1123 82 gRRIGMVFQDpMTQLNPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDP 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 679 KVLILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:COG1123 162 DLLIADEPTTALDVTTQAEILDLLRelQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPP 227
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
538-740 |
1.00e-33 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 130.47 E-value: 1.00e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 538 RSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSK---GHAYIHGCEISKDMVRirKNVGWCPQHDILFD 614
Cdd:cd03234 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGttsGQILFNGQPRKPDQFQ--KCVAYVRQDDILLP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 615 NFTVTDHLYFYGQLKGLSHQDchEKIEEM------LHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTS 688
Cdd:cd03234 95 GLTVRETLTYTAILRLPRKSS--DAIRKKrvedvlLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTS 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 689 GMDSSSRRAIWDLLQQ-QKGDRTVLLTTHfMDEADL--LGDRIAILAKGELQCCG 740
Cdd:cd03234 173 GLDSFTALNLVSTLSQlARRNRIVILTIH-QPRSDLfrLFDRILLLSSGEIVYSG 226
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
524-736 |
1.61e-33 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 130.31 E-value: 1.61e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS-KDMVRIRKN 602
Cdd:COG1124 1 MLEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTrRRRKAFRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 603 VGWCPQH--DILFDNFTVTDHLYFYGQLKGLSHQDchEKIEEMLHTLGL-EDKRNSRSKFLSGGIKRKLAIGIALIAGSK 679
Cdd:COG1124 81 VQMVFQDpyASLHPRHTVDRILAEPLRIHGLPDRE--ERIAELLEQVGLpPSFLDRYPHQLSGGQRQRVAIARALILEPE 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 680 VLILDEPTSGMDSSSRRAIWDLLQQQKGDR--TVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:COG1124 159 LLLLDEPTSALDVSVQAEILNLLKDLREERglTYLFVSHDLAVVAHLCDRVAVMQNGRI 217
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
525-735 |
6.91e-33 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 125.96 E-value: 6.91e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYkVFYTGRSKCIaVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNV 603
Cdd:cd03228 1 IEFKNVS-FSYPGRPKPV-LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDlDLESLRKNI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILFdNFTVTDHLyfygqlkglshqdchekieemlhtlgledkrnsrskfLSGGIKRKLAIGIALIAGSKVLIL 683
Cdd:cd03228 79 AYVPQDPFLF-SGTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILIL 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 684 DEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMDEADlLGDRIAILAKGE 735
Cdd:cd03228 121 DEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR-DADRIIVLDDGR 171
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
525-736 |
1.42e-32 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 126.91 E-value: 1.42e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYkVFYTGRSkciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIP-----PSKGHAYIHG---CEISKDM 596
Cdd:cd03260 1 IELRDLN-VYYGDKH---ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDlipgaPDEGEVLLDGkdiYDLDVDV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 597 VRIRKNVGWCPQHDILFDnFTVTDHLYFYGQLKG-LSHQDCHEKIEEMLHTLGLED--KRNSRSKFLSGGIKRKLAIGIA 673
Cdd:cd03260 77 LELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLHGiKLKEELDERVEEALRKAALWDevKDRLHALGLSGGQQQRLCLARA 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 674 LIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
525-736 |
2.58e-32 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 126.47 E-value: 2.58e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI---SKDMVRIR- 600
Cdd:cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLlklSRRLRKIRr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 KNVGWCPQHDILFDN--FTVTDH----LYFYGQLKGLSHQDchEKIEEMLHTLGLEDKR-NSRSKFLSGGIKRKLAIGIA 673
Cdd:cd03257 82 KEIQMVFQDPMSSLNprMTIGEQiaepLRIHGKLSKKEARK--EAVLLLLVGVGLPEEVlNRYPHELSGGQRQRVAIARA 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 674 LIAGSKVLILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKklQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
525-736 |
2.82e-32 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 129.81 E-value: 2.82e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS----KDMVRIR 600
Cdd:COG1135 2 IELENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTalseRELRAAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 KNVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKV 680
Cdd:COG1135 82 RKIGMIFQHFNLLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNPKV 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 681 LILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:COG1135 162 LLCDEATSALDPETTRSILDLLKDinRELGLTIVLITHEMDVVRRICDRVAVLENGRI 219
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
525-742 |
3.34e-32 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 126.20 E-value: 3.34e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytgrSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGceisKDMVRI---RK 601
Cdd:cd03300 1 IELENVSKFY----GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG----KDITNLpphKR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 602 NVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVL 681
Cdd:cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 682 ILDEPTSGMDSSSRRAI---WDLLQQQKGdRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:cd03300 153 LLDEPLGALDLKLRKDMqleLKRLQKELG-ITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTP 215
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
525-735 |
7.74e-32 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 123.07 E-value: 7.74e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytgrSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI---SKDMVRIRK 601
Cdd:cd03229 1 LELKNVSKRY----GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLtdlEDELPPLRR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 602 NVGWCPQHDILFDNFTVTDHLyfygqlkglshqdchekieemlhTLGLedkrnsrskflSGGIKRKLAIGIALIAGSKVL 681
Cdd:cd03229 77 RIGMVFQDFALFPHLTVLENI-----------------------ALGL-----------SGGQQQRVALARALAMDPDVL 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 682 ILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAKGE 735
Cdd:cd03229 123 LLDEPTSALDPITRREVRALLKSlqAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
525-735 |
7.88e-32 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 124.85 E-value: 7.88e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLyKVFYtGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK--DMVRIRKN 602
Cdd:cd03224 1 LEVENL-NAGY-GKSQ--ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGlpPHERARAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 603 VGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDchEKIEEMLHTL-GLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVL 681
Cdd:cd03224 77 IGYVPEGRRIFPELTVEENLLLGAYARRRAKRK--ARLERVYELFpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLL 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 682 ILDEPTSGMDSSSRRAIWDLLQQ-QKGDRTVLLTTHFMDEADLLGDRIAILAKGE 735
Cdd:cd03224 155 LLDEPSEGLAPKIVEEIFEAIRElRDEGVTILLVEQNARFALEIADRAYVLERGR 209
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
526-734 |
8.93e-32 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 124.18 E-value: 8.93e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 526 EIQHLyKVFYTGRskcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDmvriRKNVGW 605
Cdd:cd03235 1 EVEDL-TVSYGGH---PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE----RKRIGY 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 606 CPQHDILFDNF--TVTD-----HLYFYGQLKGLSHQDChEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGS 678
Cdd:cd03235 73 VPQRRSIDRDFpiSVRDvvlmgLYGHKGLFRRLSKADK-AKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDP 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 679 KVLILDEPTSGMDSSSRRAIWDLLQQQKGD-RTVLLTTHFMDEADLLGDRIAILAKG 734
Cdd:cd03235 152 DLLLLDEPFAGVDPKTQEDIYELLRELRREgMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
524-755 |
1.06e-31 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 132.58 E-value: 1.06e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLykVF-YTGRSKcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRK 601
Cdd:COG4987 333 SLELEDV--SFrYPGAGR-PVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDlDEDDLRR 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 602 NVGWCPQHDILFDNfTVTDHLyfygQL--KGLSHQDCHE-----KIEEMLHTL--GLEDKRNSRSKFLSGGIKRKLAIGI 672
Cdd:COG4987 410 RIAVVPQRPHLFDT-TLRENL----RLarPDATDEELWAalervGLGDWLAALpdGLDTWLGEGGRRLSGGERRRLALAR 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 673 ALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMDEADlLGDRIAILAKGELQCCGTPSFLKQKYGAG 752
Cdd:COG4987 485 ALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTVLLITHRLAGLE-RMDRILVLEDGRIVEQGTHEELLAQNGRY 563
|
...
gi 1958656855 753 YYM 755
Cdd:COG4987 564 RQL 566
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
525-737 |
1.23e-31 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 124.01 E-value: 1.23e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRskcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK----DMVRIR 600
Cdd:COG2884 2 IRFENVSKRYPGGR---EALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRlkrrEIPYLR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 KNVGWCPQhDI-LFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSK 679
Cdd:COG2884 79 RRIGVVFQ-DFrLLPDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 680 VLILDEPTSGMDSSSRRAIWDLLQQ--QKGdRTVLLTTHfmDEA--DLLGDRIAILAKGELQ 737
Cdd:COG2884 158 LLLADEPTGNLDPETSWEIMELLEEinRRG-TTVLIATH--DLElvDRMPKRVLELEDGRLV 216
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
495-751 |
1.31e-31 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 134.87 E-value: 1.31e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 495 VIPPLLVIGDpektskgdflqDEPAghinaIEIQHLYKVF--YTgrskciAVKDLSMNLYKGQITVLLGHNGAGKTTVCS 572
Cdd:NF033858 253 VIPPRPADDD-----------DEPA-----IEARGLTMRFgdFT------AVDHVSFRIRRGEIFGFLGSNGCGKSTTMK 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 573 VLTGLIPPSKGHAYIHGCEI-SKDMvRIRKNVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLED 651
Cdd:NF033858 311 MLTGLLPASEGEAWLFGQPVdAGDI-ATRRRVGYMSQAFSLYGELTVRQNLELHARLFHLPAAEIAARVAEMLERFDLAD 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 652 KRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQ-QKGDR-TVLLTTHFMDEAdLLGDRIA 729
Cdd:NF033858 390 VADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLLIElSREDGvTIFISTHFMNEA-ERCDRIS 468
|
250 260
....*....|....*....|..
gi 1958656855 730 ILAKGELQCCGTPSFLKQKYGA 751
Cdd:NF033858 469 LMHAGRVLASDTPAALVAARGA 490
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
542-742 |
1.32e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 126.29 E-value: 1.32e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 542 IAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS-----KDMVRIRKNVGWC---PQHDiLF 613
Cdd:PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITagkknKKLKPLRKKVGIVfqfPEHQ-LF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 614 DNfTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKF-LSGGIKRKLAIGIALIAGSKVLILDEPTSGMDS 692
Cdd:PRK13634 100 EE-TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFeLSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 693 SSRRAIWDL---LQQQKGdRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:PRK13634 179 KGRKEMMEMfykLHKEKG-LTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP 230
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
525-745 |
1.96e-31 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 124.37 E-value: 1.96e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVfYTGRskcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKD-M-VRIRKN 602
Cdd:COG1137 4 LEAENLVKS-YGKR---TVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLpMhKRARLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 603 VGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLI 682
Cdd:COG1137 80 IGYLPQEASIFRKLTVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFIL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 683 LDEPTSGMD----SSSRRAIWDLLQQQKGdrtVLLTTHFMDEAdlLG--DRIAILAKGELQCCGTPSFL 745
Cdd:COG1137 160 LDEPFAGVDpiavADIQKIIRHLKERGIG---VLITDHNVRET--LGicDRAYIISEGKVLAEGTPEEI 223
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
526-736 |
2.27e-31 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 122.75 E-value: 2.27e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 526 EIQHLYKVFYTGRSkciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDmvRIRKNVGW 605
Cdd:cd03226 1 RIENISFSYKKGTE---ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAK--ERRKSIGY 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 606 CPQH--DILFDNfTVTDHLYFygQLKGLShqDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLIL 683
Cdd:cd03226 76 VMQDvdYQLFTD-SVREELLL--GLKELD--AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIF 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 684 DEPTSGMDSSSRRAIWDLLQQ-QKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:cd03226 151 DEPTSGLDYKNMERVGELIRElAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
|
| proV |
TIGR01186 |
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine ... |
536-742 |
2.60e-31 |
|
glycine betaine/L-proline transport ATP binding subunit; This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130254 [Multi-domain] Cd Length: 363 Bit Score: 127.66 E-value: 2.60e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 536 TGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHG---CEISKDMVR--IRKNVGWCPQHD 610
Cdd:TIGR01186 3 TGGKK--GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGeniMKQSPVELRevRRKKIGMVFQQF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 611 ILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGM 690
Cdd:TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 691 DSSSRRAIWDLLQ--QQKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:TIGR01186 161 DPLIRDSMQDELKklQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTP 214
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1336-1527 |
3.49e-31 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 122.20 E-value: 3.49e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKvPLLAvnKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQQWIGY 1415
Cdd:COG4133 3 LEAENLSCRRGER-LLFS--GLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 CPEFDALLNFMTGREMLVMHARIRGIPECHIKtcVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDE 1495
Cdd:COG4133 80 LGHADGLKPELTVRENLRFWAALYGLRADREA--IDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDE 157
|
170 180 190
....*....|....*....|....*....|..
gi 1958656855 1496 PSTGMDPVARRLVWDAVGRVRESGKTIVITSH 1527
Cdd:COG4133 158 PFTALDAAGVALLAELIAAHLARGGAVLLTTH 189
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
1338-1546 |
4.83e-31 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 120.04 E-value: 4.83e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1338 VKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI-RTDMAKVQQWIGYC 1416
Cdd:cd00267 2 IENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIaKLPLEELRRRIGYV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1417 PEFdallnfmtgremlvmharirgipechiktcvdmilenllmcvyadklvktySDGNKRVLSTAIALLGEPTVILLDEP 1496
Cdd:cd00267 79 PQL---------------------------------------------------SGGQRQRVALARALLLNPDLLLLDEP 107
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1497 STGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:cd00267 108 TSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
1337-1546 |
6.24e-31 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 121.81 E-value: 6.24e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1337 VVKELSKVYKEKVPLlAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIR-TDMAKVQQWIGY 1415
Cdd:cd03225 1 ELKNLSFSYPDGARP-ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTkLSLKELRRKVGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 C---PEfDALLNfMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVIL 1492
Cdd:cd03225 80 VfqnPD-DQFFG-PTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 1493 LDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:cd03225 158 LDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
515-750 |
8.45e-31 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 129.88 E-value: 8.45e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 515 QDEPAGHINAIEIQHLyKVFYTGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK 594
Cdd:COG4988 327 APLPAAGPPSIELEDV-SFSYPGGRP--ALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSD 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 595 -DMVRIRKNVGWCPQHDILFDNfTVTDHLYFYGqlKGLSHQDCHE-----KIEEMLHTL--GLEDKRNSRSKFLSGGIKR 666
Cdd:COG4988 404 lDPASWRRQIAWVPQNPYLFAG-TIRENLRLGR--PDASDEELEAaleaaGLDEFVAALpdGLDTPLGEGGRGLSGGQAQ 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 667 KLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHfmDEADL-LGDRIAILAKGELQCCGTPSFL 745
Cdd:COG4988 481 RLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITH--RLALLaQADRILVLDDGRIVEQGTHEEL 558
|
....*
gi 1958656855 746 KQKYG 750
Cdd:COG4988 559 LAKNG 563
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
525-743 |
1.27e-30 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 123.23 E-value: 1.27e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRS-KCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVR---IR 600
Cdd:PRK13637 3 IKIENLTHIYMEGTPfEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKlsdIR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 KNVGWC---PQHDiLFDNfTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLE-DKRNSRSKF-LSGGIKRKLAIGIALI 675
Cdd:PRK13637 83 KKVGLVfqyPEYQ-LFEE-TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDyEDYKDKSPFeLSGGQKRRVAIAGVVA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 676 AGSKVLILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPS 743
Cdd:PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKelHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
525-736 |
2.06e-30 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 124.14 E-value: 2.06e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI----SKDMVRIR 600
Cdd:PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLtalsEKELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 KNVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKV 680
Cdd:PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKV 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 681 LILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:PRK11153 162 LLCDEATSALDPATTRSILELLKDinRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
523-743 |
7.85e-30 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 120.89 E-value: 7.85e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 523 NAIEIQHLYkvF-YTGRSKcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMV-RIR 600
Cdd:PRK13635 4 EIIRVEHIS--FrYPDAAT-YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVwDVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 KNVGWCPQH-DILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSK 679
Cdd:PRK13635 81 RQVGMVFQNpDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 680 VLILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEAdLLGDRIAILAKGELQCCGTPS 743
Cdd:PRK13635 161 IIILDEATSMLDPRGRREVLETVRQlkEQKGITVLSITHDLDEA-AQADRVIVMNKGEILEEGTPE 225
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
543-741 |
9.75e-30 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 119.45 E-value: 9.75e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK----DMVRI---RK----NVgwcpqhdi 611
Cdd:COG4674 25 ALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGldehEIARLgigRKfqkpTV-------- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 612 lFDNFTVTDHLYF-----YGQLKGLSH---QDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLIL 683
Cdd:COG4674 97 -FEELTVFENLELalkgdRGVFASLFArltAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLEIGMLLAQDPKLLLL 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 684 DEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGT 741
Cdd:COG4674 176 DEPVAGMTDAETERTAELLKSLAGKHSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGS 233
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
525-737 |
1.05e-29 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 118.51 E-value: 1.05e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytgrSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGceisKDMVRIR---K 601
Cdd:cd03301 1 VELENVTKRF----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG----RDVTDLPpkdR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 602 NVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVL 681
Cdd:cd03301 73 DIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVF 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 682 ILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHFMDEADLLGDRIAILAKGELQ 737
Cdd:cd03301 153 LMDEPLSNLDAKLRVQMRAELKrlQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
526-740 |
2.14e-29 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 116.38 E-value: 2.14e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 526 EIQHLYkVFYTGRSkciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNVG 604
Cdd:cd03214 1 EVENLS-VGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASlSPKELARKIA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQhdilfdnftvtdhlyfygqlkglshqdchekieeMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:cd03214 77 YVPQ----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLD 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 685 EPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCG 740
Cdd:cd03214 123 EPTSHLDIAHQIELLELLRRlaRERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
524-755 |
2.30e-29 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 126.87 E-value: 2.30e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYkvF-YTGRSKcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRK 601
Cdd:COG2274 473 DIELENVS--FrYPGDSP-PVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQiDPASLRR 549
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 602 NVGWCPQHDILF-----DNFTVTDhlyfygqlKGLSHQD---------CHEKIEEM---LHTLGLEDKRNsrskfLSGGI 664
Cdd:COG2274 550 QIGVVLQDVFLFsgtirENITLGD--------PDATDEEiieaarlagLHDFIEALpmgYDTVVGEGGSN-----LSGGQ 616
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 665 KRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTH---FMDEAdllgDRIAILAKGELQCCGT 741
Cdd:COG2274 617 RQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLKGRTVIIIAHrlsTIRLA----DRIIVLDKGRIVEDGT 692
|
250
....*....|....
gi 1958656855 742 PSFLKQKYGAGYYM 755
Cdd:COG2274 693 HEELLARKGLYAEL 706
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
1336-1555 |
3.12e-29 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 117.54 E-value: 3.12e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEkvpLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI---------RTDM 1406
Cdd:cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDItglppheiaRLGI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1407 AKVQQWIGYCPEFDALLNFMTG-----REMLVMHARIRGIPECHIKtcVDMILENLLMCVYADKLVKTYSDGNKRVLSTA 1481
Cdd:cd03219 78 GRTFQIPRLFPELTVLENVMVAaqartGSGLLLARARREEREARER--AEELLERVGLADLADRPAGELSYGQQRRLEIA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 1482 IALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQH 1555
Cdd:cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
525-736 |
3.85e-29 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 116.86 E-value: 3.85e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytgrSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI---SKDMVRIRK 601
Cdd:cd03262 1 IEIKNLHKSF----GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLtddKKNINELRQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 602 NVGWCPQHDILFDNFTVTDHLYFyGQLK--GLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSK 679
Cdd:cd03262 77 KVGMVFQQFNLFPHLTVLENITL-APIKvkGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPK 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 680 VLILDEPTSGMDSSSRRAIWDLLQQ--QKGdRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:cd03262 156 VMLFDEPTSALDPELVGEVLDVMKDlaEEG-MTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
526-735 |
5.03e-29 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 117.01 E-value: 5.03e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 526 EIQHLYkVFYtGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMV--RIRKNV 603
Cdd:COG0410 5 EVENLH-AGY-GGIH--VLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPhrIARLGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILFDNFTVTDHLYFyGQLKGLSHQDCHEKIEEMLHTL-GLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLI 682
Cdd:COG0410 81 GYVPEGRRIFPSLTVEENLLL-GAYARRDRAEVRADLERVYELFpRLKERRRQRAGTLSGGEQQMLAIGRALMSRPKLLL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 683 LDEPTSGMDSSSRRAIWDLLQQ-QKGDRTVLLTTHFMDEADLLGDRIAILAKGE 735
Cdd:COG0410 160 LDEPSLGLAPLIVEEIFEIIRRlNREGVTILLVEQNARFALEIADRAYVLERGR 213
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
525-737 |
7.67e-29 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 116.66 E-value: 7.67e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYT--------GRSKCI---------AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYI 587
Cdd:cd03267 1 IEVSNLSKSYRVyskepgliGSLKSLfkrkyreveALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 588 HGCEISKDMVRIRKNVGWC-PQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKR 666
Cdd:cd03267 81 AGLVPWKRRKKFLRRIGVVfGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRM 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 667 KLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDR--TVLLTTHFMDEADLLGDRIAILAKGELQ 737
Cdd:cd03267 161 RAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERgtTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
543-736 |
2.03e-28 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 114.99 E-value: 2.03e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNVGWCPQHDILF-----DNF 616
Cdd:cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQlDPADLRRNIGYVPQDVTLFygtlrDNI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 617 TvtdhlyfygqLKGLSHQDchEKIEEML-----------HTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDE 685
Cdd:cd03245 99 T----------LGAPLADD--ERILRAAelagvtdfvnkHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDE 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 686 PTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMDEADLLgDRIAILAKGEL 736
Cdd:cd03245 167 PTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLV-DRIIVMDSGRI 216
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
523-742 |
2.06e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 116.82 E-value: 2.06e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 523 NAIEIQHLykVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPP---SKGHAYIHGCEI-SKDMVR 598
Cdd:PRK13640 4 NIVEFKHV--SFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPddnPNSKITVDGITLtAKTVWD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 599 IRKNVGWCPQH-DILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAG 677
Cdd:PRK13640 82 IREKVGIVFQNpDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 678 SKVLILDEPTSGMDSSSRRAIWDLLQQQKGDR--TVLLTTHFMDEADlLGDRIAILAKGELQCCGTP 742
Cdd:PRK13640 162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNnlTVISITHDIDEAN-MADQVLVLDDGKLLAQGSP 227
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
529-748 |
2.14e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 116.77 E-value: 2.14e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 529 HLYKVFYT--------GRskciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS-----KD 595
Cdd:PRK13649 4 NLQNVSYTyqagtpfeGR----ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITstsknKD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 596 MVRIRKNVGWCPQ--HDILFDNfTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKF-LSGGIKRKLAIGI 672
Cdd:PRK13649 80 IKQIRKKVGLVFQfpESQLFEE-TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFeLSGGQMRRVAIAG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 673 ALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQ-QKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPS-------F 744
Cdd:PRK13649 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKlHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKdifqdvdF 238
|
....
gi 1958656855 745 LKQK 748
Cdd:PRK13649 239 LEEK 242
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
525-743 |
3.06e-28 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 114.97 E-value: 3.06e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRskcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVR----IR 600
Cdd:cd03256 1 IEVENLSKTYPNGK---KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKalrqLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 KNVGWCPQHDILFDNFTVTD---------HLYFYGQLKGLSHQDcHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIG 671
Cdd:cd03256 78 RQIGMIFQQFNLIERLSVLEnvlsgrlgrRSTWRSLFGLFPKEE-KQRALAALERVGLLDKAYQRADQLSGGQQQRVAIA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 672 IALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPS 743
Cdd:cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRinREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
525-786 |
3.36e-28 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 119.37 E-value: 3.36e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVF-----------YTGRSK---------CIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGH 584
Cdd:PRK10070 5 LEIKNLYKIFgehpqrafkyiEQGLSKeqilektglSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 585 AYIHGCEISK------DMVRiRKNVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSK 658
Cdd:PRK10070 85 VLIDGVDIAKisdaelREVR-RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 659 FLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLL--QQQKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:PRK10070 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELvkLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEV 243
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1958656855 737 QCCGTPSFLKQKYGAGYYMTIIKTPLCDTEKLAKVIYHHIPNAILESRIG 786
Cdd:PRK10070 244 VQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPG 293
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
523-745 |
3.58e-28 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 115.99 E-value: 3.58e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 523 NAIEIQHLykvFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVR-IRK 601
Cdd:PRK13647 3 NIIEVEDL---HFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKwVRS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 602 NVGWCPQ--HDILFDNfTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSK 679
Cdd:PRK13647 80 KVGLVFQdpDDQVFSS-TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 680 VLILDEPTSGMDSSSRR---AIWDLLQQQkgDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFL 745
Cdd:PRK13647 159 VIVLDEPMAYLDPRGQEtlmEILDRLHNQ--GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
1336-1554 |
6.55e-28 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 113.58 E-value: 6.55e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVPLLavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI-RTDMAKVQQWIG 1414
Cdd:COG1122 1 IELENLSFSYPGGTPAL--DDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDItKKNLRELRRKVG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1415 YC---PE--------FD----ALLNFmtgremlvmharirGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLS 1479
Cdd:COG1122 79 LVfqnPDdqlfaptvEEdvafGPENL--------------GLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVA 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 1480 TAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1554
Cdd:COG1122 145 IAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPR 219
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
524-742 |
6.82e-28 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 117.10 E-value: 6.82e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYKVFytgrSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGceisKDMVRI---R 600
Cdd:COG3839 3 SLELENVSKSY----GGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGG----RDVTDLppkD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 KNVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKV 680
Cdd:COG3839 75 RNIAMVFQSYALYPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPKV 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 681 LILDEPTSGMDSSSRraiWDL------LQQQKGdRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:COG3839 155 FLLDEPLSNLDAKLR---VEMraeikrLHRRLG-TTTIYVTHDQVEAMTLADRIAVMNDGRIQQVGTP 218
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
1336-1556 |
7.52e-28 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 113.91 E-value: 7.52e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKvplLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIrTDM---AKVQQW 1412
Cdd:TIGR04406 2 LVAENLIKSYKKR---KVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDI-THLpmhERARLG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1413 IGYCPEFDALLNFMTGREMLVMHARIRG-IPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVI 1491
Cdd:TIGR04406 78 IGYLPQEASIFRKLTVEENIMAVLEIRKdLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFI 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 1492 LLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:TIGR04406 158 LLDEPFAGVDPIAVGDIKKIIKHLKERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEI 222
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
544-742 |
8.94e-28 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 113.58 E-value: 8.94e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISkDMVRIRKNVGWCPQHDILFDNFTVTDHLY 623
Cdd:cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT-NLPPEKRDISYVPQNYALFPHMTVYKNIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 624 FYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQ 703
Cdd:cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958656855 704 --QQKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:cd03299 174 kiRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKP 214
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
524-782 |
9.84e-28 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 115.95 E-value: 9.84e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYKVF-----YTGRSKCI------------AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAY 586
Cdd:COG4586 1 IIEVENLSKTYrvyekEPGLKGALkglfrreyreveAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 587 IHGCEISKDMVRIRKNVG----------WcpqhDI-LFDNFTVTDHLYfygqlkGLSHQDCHEKIEEMLHTLGLEDKRNS 655
Cdd:COG4586 81 VLGYVPFKRRKEFARRIGvvfgqrsqlwW----DLpAIDSFRLLKAIY------RIPDAEYKKRLDELVELLDLGELLDT 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 656 RSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAK 733
Cdd:COG4586 151 PVRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEynRERGTTILLTSHDMDDIEALCDRVIVIDH 230
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 734 GELQCCGTPSFLKQKYGAGYYMTII---KTPLCDTEKLAKVIYHHIPNAILE 782
Cdd:COG4586 231 GRIIYDGSLEELKERFGPYKTIVLElaePVPPLELPRGGEVIEREGNRVRLE 282
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
524-720 |
1.24e-27 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 113.64 E-value: 1.24e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLyKVFYTGRskcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKG-HAYIHGCEISK-DMVRIRK 601
Cdd:COG1119 3 LLELRNV-TVRRGGK---TILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRGGeDVWELRK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 602 NVGWC-PQhdiLFDNFTVTDHLY------FYGQLkGL----SHQDcHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAI 670
Cdd:COG1119 79 RIGLVsPA---LQLRFPRDETVLdvvlsgFFDSI-GLyrepTDEQ-RERARELLELLGLAHLADRPFGTLSQGEQRRVLI 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 671 GIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDE 720
Cdd:COG1119 154 ARALVKDPELLILDEPTAGLDLGARELLLALLDKlaAEGAPTLVLVTHHVEE 205
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
543-743 |
2.22e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 113.63 E-value: 2.22e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS---KDMVRIRKNVGwcpqhdILFDN---- 615
Cdd:PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKydkKSLLEVRKTVG------IVFQNpddq 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 616 -F--TVTDHLYFyGQLK-GLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMD 691
Cdd:PRK13639 91 lFapTVEEDVAF-GPLNlGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 692 SSSRRAIWDLLQQ-QKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPS 743
Cdd:PRK13639 170 PMGASQIMKLLYDlNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPK 222
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
524-734 |
3.30e-27 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 112.65 E-value: 3.30e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGhayihgcEISKDMVRIRKnv 603
Cdd:COG4525 3 MLTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSG-------EITLDGVPVTG-- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 gwcP--------QHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALI 675
Cdd:COG4525 74 ---PgadrgvvfQKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 676 AGSKVLILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAKG 734
Cdd:COG4525 151 ADPRFLLMDEPFGALDALTREQMQELLLDvwQRTGKGVFLITHSVEEALFLATRLVVMSPG 211
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
543-748 |
5.80e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 112.90 E-value: 5.80e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS-----KDMVRIRKNVGWCPQ--HDILFDN 615
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSstskqKEIKPVRKKVGVVFQfpESQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 616 fTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKF-LSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSS 694
Cdd:PRK13643 101 -TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFeLSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 695 RRAIWDLLQ--QQKGdRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFLKQK 748
Cdd:PRK13643 180 RIEMMQLFEsiHQSG-QTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
523-742 |
1.36e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 111.36 E-value: 1.36e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 523 NAIEIQHLyKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMV-RIRK 601
Cdd:PRK13650 3 NIIEVKNL-TFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVwDIRH 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 602 NVGWCPQH-DILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKV 680
Cdd:PRK13650 82 KIGMVFQNpDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 681 LILDEPTSGMDSSSRRaiwDLLQQQKGDR-----TVLLTTHFMDEAdLLGDRIAILAKGELQCCGTP 742
Cdd:PRK13650 162 IILDEATSMLDPEGRL---ELIKTIKGIRddyqmTVISITHDLDEV-ALSDRVLVMKNGQVESTSTP 224
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
544-736 |
4.58e-26 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 107.25 E-value: 4.58e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPS--KGHAYIHGceISKDMVRIRKNVGWCPQHDILFDNFTVTDH 621
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLgvSGEVLING--RPLDKRSFRKIIGYVPQDDILHPTLTVRET 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 622 LYFYGQLKGLShqdchekieemlhtlgledkrnsrskflsGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDL 701
Cdd:cd03213 103 LMFAAKLRGLS-----------------------------GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSL 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1958656855 702 LQQ-QKGDRTVLLTTH---------FmdeadllgDRIAILAKGEL 736
Cdd:cd03213 154 LRRlADTGRTIICSIHqpsseifelF--------DKLLLLSQGRV 190
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
523-743 |
5.01e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 109.94 E-value: 5.01e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 523 NAIEIQHLYKVFYTGRSkciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI---SKDMVRI 599
Cdd:PRK13636 4 YILKVEELNYNYSDGTH---ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIdysRKGLMKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 600 RKNVGWCPQHDilfDNFTVTDHLY---FYGQLK-GLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALI 675
Cdd:PRK13636 81 RESVGMVFQDP---DNQLFSASVYqdvSFGAVNlKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 676 AGSKVLILDEPTSGMDSSSRRAIWDLLQQ-QKG-DRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPS 743
Cdd:PRK13636 158 MEPKVLVLDEPTAGLDPMGVSEIMKLLVEmQKElGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 227
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
527-742 |
5.08e-26 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 108.52 E-value: 5.08e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 527 IQHLYKVfYTGRSkciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DM-VRIRKNVG 604
Cdd:TIGR04406 4 AENLIKS-YKKRK---VVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDITHlPMhERARLGIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDILFDNFTVTDHLYFYGQL-KGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLIL 683
Cdd:TIGR04406 80 YLPQEASIFRKLTVEENIMAVLEIrKDLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 684 DEPTSGMDSSS----RRAIWDLLQQQKGdrtVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:TIGR04406 160 DEPFAGVDPIAvgdiKKIIKHLKERGIG---VLITDHNVRETLDICDRAYIISDGKVLAEGTP 219
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1336-1555 |
5.20e-26 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 108.64 E-value: 5.20e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRtdmaKVQQWIGY 1415
Cdd:COG1121 7 IELENLTVSYGGRP---VLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPR----RARRRIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 CP---EFDAllNF-MTGREMLVM----HARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNK-RVLsTAIALLG 1486
Cdd:COG1121 80 VPqraEVDW--DFpITVRDVVLMgrygRRGLFRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQqRVL-LARALAQ 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 1487 EPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFkCLGSPQH 1555
Cdd:COG1121 157 DPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLLNRGLV-AHGPPEE 224
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
525-742 |
5.53e-26 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 111.39 E-value: 5.53e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDM-VRIRkNV 603
Cdd:COG1118 3 IEVRNISKRF--GSFT--LLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLFTNLpPRER-RV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLIL 683
Cdd:COG1118 78 GFVFQHYALFPHMTVAENIAFGLRVRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVEPEVLLL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 684 DEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:COG1118 158 DEPFGALDAKVRKELRRWLRRlhDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTP 218
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
519-742 |
5.94e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 109.07 E-value: 5.94e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 519 AGHINAIEIQHLYkvFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVR 598
Cdd:PRK13648 2 EDKNSIIVFKNVS--FQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 599 -IRKNVGwcpqhdILFDN----F---TVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAI 670
Cdd:PRK13648 80 kLRKHIG------IVFQNpdnqFvgsIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAI 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 671 GIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDR--TVLLTTHFMDEAdLLGDRIAILAKGELQCCGTP 742
Cdd:PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHniTIISITHDLSEA-MEADHVIVMNKGTVYKEGTP 226
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
542-742 |
8.33e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 109.02 E-value: 8.33e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 542 IAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS--KDMVRIRKNVGWCPQHDilfDN---- 615
Cdd:PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSdeENLWDIRNKAGMVFQNP---DNqiva 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 616 FTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSR 695
Cdd:PRK13633 101 TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGR 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958656855 696 RAIWDLLQQ--QKGDRTVLLTTHFMDEAdLLGDRIAILAKGELQCCGTP 742
Cdd:PRK13633 181 REVVNTIKElnKKYGITIILITHYMEEA-VEADRIIVMDSGKVVMEGTP 228
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
545-737 |
8.98e-26 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 107.00 E-value: 8.98e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 545 KDLSMNL---YKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHG-----CEISKDMVRIRKNVGWCPQHDILFDNF 616
Cdd:cd03297 11 PDFTLKIdfdLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGtvlfdSRKKINLPPQQRKIGLVFQQYALFPHL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 617 TVTDHLYFygQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRR 696
Cdd:cd03297 91 NVRENLAF--GLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRL 168
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958656855 697 AIWDLLQQQKGD--RTVLLTTHFMDEADLLGDRIAILAKGELQ 737
Cdd:cd03297 169 QLLPELKQIKKNlnIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
1336-1556 |
1.37e-25 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 107.39 E-value: 1.37e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVPllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIR-TDMAKVQQWIG 1414
Cdd:cd03295 1 IEFENVTKRYGGGKK--AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIReQDPVELRRKIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1415 YCPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILE--NLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVIL 1492
Cdd:cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLAlvGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 1493 LDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:cd03295 159 MDEPFGALDPITRDQLQEEFKRLqQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1336-1554 |
1.79e-25 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 107.43 E-value: 1.79e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEkvpLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIrTDMAKVQ----- 1410
Cdd:COG0411 5 LEVRGLTKRFGG---LVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDI-TGLPPHRiarlg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1411 -----QWIGYCPEfdallnfMTGRE--MLVMHARIRGIPECHIKTC-------------VDMILENLLMCVYADKLVKTY 1470
Cdd:COG0411 81 iartfQNPRLFPE-------LTVLEnvLVAAHARLGRGLLAALLRLprarreerearerAEELLERVGLADRADEPAGNL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1471 SDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVR-ESGKTIVITSHSMEECEALCTRLAIMVQGQFKC 1549
Cdd:COG0411 154 SYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRdERGITILLIEHDMDLVMGLADRIVVLDFGRVIA 233
|
....*
gi 1958656855 1550 LGSPQ 1554
Cdd:COG0411 234 EGTPA 238
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
524-742 |
2.33e-25 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 106.65 E-value: 2.33e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYKVFytGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRkNV 603
Cdd:cd03296 2 SIEVRNVSKRF--GDFV--ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQER-NV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILFDNFTVTDHLYFygqlkGL---------SHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIAL 674
Cdd:cd03296 77 GFVFQHYALFRHMTVFDNVAF-----GLrvkprserpPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 675 IAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDR--TVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELhvTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTP 221
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
1336-1556 |
2.59e-25 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 106.09 E-value: 2.59e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIrTDM---AKVQQW 1412
Cdd:cd03218 1 LRAENLSKRYGKRK---VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDI-TKLpmhKRARLG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1413 IGYCPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVIL 1492
Cdd:cd03218 77 IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 1493 LDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:cd03218 157 LDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
525-731 |
3.34e-25 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 108.22 E-value: 3.34e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPP---SKGHAYIHGCEIS----KDMV 597
Cdd:COG0444 2 LEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLklseKELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 598 RIR-KNVGWCPQhdilfD-----N--FTVTDhlyfygQL-------KGLSHQDCHEKIEEMLHTLGLEDKRNSRSKF--- 659
Cdd:COG0444 82 KIRgREIQMIFQ-----DpmtslNpvMTVGD------QIaeplrihGGLSKAEARERAIELLERVGLPDPERRLDRYphe 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 660 LSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHfmdeaDL-----LGDRIAIL 731
Cdd:COG0444 151 LSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKdlQRELGLAILFITH-----DLgvvaeIADRVAVM 224
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
525-736 |
4.07e-25 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 103.28 E-value: 4.07e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytgrSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISkdmvrirknvG 604
Cdd:cd03216 1 LELRGITKRF----GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS----------F 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDIlfdnftvtdhlyfygQLK-GLSHQdchekieemlhtlgledkrnsrskfLSGGIKRKLAIGIALIAGSKVLIL 683
Cdd:cd03216 67 ASPRDAR---------------RAGiAMVYQ-------------------------LSVGERQMVEIARALARNARLLIL 106
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 684 DEPTSGMDSSSRRAIWDLLQQQKGD-RTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:cd03216 107 DEPTAALTPAEVERLFKVIRRLRAQgVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
1336-1546 |
7.00e-25 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 104.52 E-value: 7.00e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIrTDMAKVQQWIGY 1415
Cdd:cd03259 1 LELKGLSKTYGSVR---ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV-TGVPPERRNIGM 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 CPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDE 1495
Cdd:cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 1496 PSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:cd03259 157 PLSALDAKLREELREELKELqRELGITTIYVTHDQEEALALADRIAVMNEGR 208
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
1336-1558 |
8.99e-25 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 104.44 E-value: 8.99e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEkvpLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIrTDMA---KVQQW 1412
Cdd:cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDI-TGLPpheRARAG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1413 IGYCPEFDALLNFMTGREMLVMHARIRGIPEchiktcVDMILENllmcVYA---------DKLVKTYSDGNKRVLSTAIA 1483
Cdd:cd03224 77 IGYVPEGRRIFPELTVEENLLLGAYARRRAK------RKARLER----VYElfprlkerrKQLAGTLSGGEQQMLAIARA 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 1484 LLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKS 1558
Cdd:cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
525-742 |
1.52e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 106.47 E-value: 1.52e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRSKCI-AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS---------- 593
Cdd:PRK13631 22 LRVKNLYCVFDEKQENELvALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGdkknnhelit 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 594 -------KDMVRIRKNVGWC---PQHDILFDnfTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKF-LSG 662
Cdd:PRK13631 102 npyskkiKNFKELRRRVSMVfqfPEYQLFKD--TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFgLSG 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 663 GIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDL-LQQQKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGT 741
Cdd:PRK13631 180 GQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLiLDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
|
.
gi 1958656855 742 P 742
Cdd:PRK13631 260 P 260
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
525-736 |
2.53e-24 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 102.87 E-value: 2.53e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGrskCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS----KDMVRIR 600
Cdd:cd03292 1 IEFINVTKTYPNG---TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSdlrgRAIPYLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 KNVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKV 680
Cdd:cd03292 78 RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 681 LILDEPTSGMDSSSRRAIWDLLQQ-QKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKiNKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
535-743 |
2.67e-24 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 103.82 E-value: 2.67e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 535 YTGRSkciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS--KDMVRIRKNVGWCPQHDIL 612
Cdd:PRK10895 13 YKGRR---VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISllPLHARARRGIGYLPQEASI 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 613 FDNFTVTDHLYFYGQL-KGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMD 691
Cdd:PRK10895 90 FRRLSVYDNLMAVLQIrDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 692 SSSRRAIWDLLQQ-QKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPS 743
Cdd:PRK10895 170 PISVIDIKRIIEHlRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPT 222
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
1319-1545 |
4.69e-24 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 102.80 E-value: 4.69e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1319 EAENIKYHLDTLIKKSPLVVKELSKVYKEKVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVK 1398
Cdd:cd03267 2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1399 GFNIRTDMakvqqwigycPEFDALLNFMTG-----------REMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLV 1467
Cdd:cd03267 82 GLVPWKRR----------KKFLRRIGVVFGqktqlwwdlpvIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPV 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 1468 KTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGR-VRESGKTIVITSHSMEECEALCTRLAIMVQG 1545
Cdd:cd03267 152 RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEyNRERGTTVLLTSHYMKDIEALARRVLVIDKG 230
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
543-740 |
5.78e-24 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 102.23 E-value: 5.78e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGceiskdmvrirkNVGWcpqhdiLFD-------N 615
Cdd:cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG------------RVSS------LLGlgggfnpE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 616 FTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSR 695
Cdd:cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQ 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958656855 696 RAIWDLLQQ-QKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCG 740
Cdd:cd03220 179 EKCQRRLRElLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
546-736 |
5.86e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 103.76 E-value: 5.86e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 546 DLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI-----SKDMVRIRKNVGWCPQ--HDILFDNfTV 618
Cdd:PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHItpetgNKNLKKLRKKVSLVFQfpEAQLFEN-TV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 619 TDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKF-LSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRA 697
Cdd:PRK13641 104 LKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFeLSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKE 183
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958656855 698 IWDLLQQ-QKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:PRK13641 184 MMQLFKDyQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
1353-1542 |
1.92e-23 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 100.30 E-value: 1.92e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1353 AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRtdmaKVQQWIGYCPE-FDALLNF-MTGRE 1430
Cdd:cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRIGYVPQrRSIDRDFpISVRD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1431 MLVM----HARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNK-RVLsTAIALLGEPTVILLDEPSTGMDPVAR 1505
Cdd:cd03235 90 VVLMglygHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQqRVL-LARALVQDPDLLLLDEPFAGVDPKTQ 168
|
170 180 190
....*....|....*....|....*....|....*..
gi 1958656855 1506 RLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIM 1542
Cdd:cd03235 169 EDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL 205
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
524-742 |
1.98e-23 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 104.01 E-value: 1.98e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYKVFytGRSKCIavKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKnV 603
Cdd:PRK10851 2 SIEIANIKKSF--GRTQVL--NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK-V 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILFDNFTVTDHLYFygqlkGLSHQDCHE---------KIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIAL 674
Cdd:PRK10851 77 GFVFQHYALFRHMTVFDNIAF-----GLTVLPRRErpnaaaikaKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 675 IAGSKVLILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQlhEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTP 221
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
525-742 |
2.15e-23 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 104.26 E-value: 2.15e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytgRSKCIaVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISkDMVRIRKNVG 604
Cdd:PRK09452 15 VELRGISKSF---DGKEV-ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT-HVPAENRHVN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLD 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 685 EPTSGMDSSSRRAIW-DL--LQQQKGdRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:PRK09452 170 ESLSALDYKLRKQMQnELkaLQRKLG-ITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTP 229
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
525-735 |
7.01e-23 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 100.16 E-value: 7.01e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTG-RSKCIAVKDLSMNLYKGQ-ITVLlGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI--------SK 594
Cdd:COG1101 2 LELKNLSKTFNPGtVNEKRALDGLNLTIEEGDfVTVI-GSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVtklpeykrAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 595 DMVRIRKN--VGWCPqhdilfdNFTVTDHL---YFYGQLKGLS---HQDCHEKIEEMLHTL--GLEDKRNSRSKFLSGGI 664
Cdd:COG1101 81 YIGRVFQDpmMGTAP-------SMTIEENLalaYRRGKRRGLRrglTKKRRELFRELLATLglGLENRLDTKVGLLSGGQ 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 665 KRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAKGE 735
Cdd:COG1101 154 RQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKivEENNLTTLMVTHNMEQALDYGNRLIMMHEGR 226
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
1353-1562 |
7.31e-23 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 106.36 E-value: 7.31e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1353 AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIR-TDMAkVQQWIGYCPEFDALLNFMTGREM 1431
Cdd:NF033858 281 AVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDaGDIA-TRRRVGYMSQAFSLYGELTVRQN 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1432 LVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDA 1511
Cdd:NF033858 360 LELHARLFHLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRL 439
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 1512 VGRV-RESGKTIVITSHSMEECEaLCTRLAIMVQGQFKCLGSPQHLKSRFGS 1562
Cdd:NF033858 440 LIELsREDGVTIFISTHFMNEAE-RCDRISLMHAGRVLASDTPAALVAARGA 490
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
544-734 |
7.38e-23 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 99.08 E-value: 7.38e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDmvrirknvgwCPQHDILFDNF------T 617
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEP----------GPDRMVVFQNYsllpwlT 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 618 VTDHLYFYGQ--LKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSR 695
Cdd:TIGR01184 71 VRENIALAVDrvLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958656855 696 RAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAKG 734
Cdd:TIGR01184 151 GNLQEELMQiwEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
525-742 |
8.94e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 100.26 E-value: 8.94e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYkvfYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVR-IRKNV 603
Cdd:PRK13652 4 IETRDLC---YSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIReVRKFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQH--DILFDNfTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVL 681
Cdd:PRK13652 81 GLVFQNpdDQIFSP-TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 682 ILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDlpETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTV 222
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1310-1554 |
1.01e-22 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 104.50 E-value: 1.01e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1310 GAEDEDV---LEEAENIKYHLDTLIKKSPLVVKELSKVYK--EKVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNML 1384
Cdd:TIGR03269 251 GTPDEVVavfMEGVSEVEKECEVEVGEPIIKVRNVSKRYIsvDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKII 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1385 TREQPITSGDAFVKGFNIRTDMAK--------VQQWIGYC-------PEFDALLNFM--TGREMLVMHARIRGIPECHIK 1447
Cdd:TIGR03269 331 AGVLEPTSGEVNVRVGDEWVDMTKpgpdgrgrAKRYIGILhqeydlyPHRTVLDNLTeaIGLELPDELARMKAVITLKMV 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1448 TCVDMILENLLmcvyaDKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRES-GKTIVITS 1526
Cdd:TIGR03269 411 GFDEEKAEEIL-----DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEmEQTFIIVS 485
|
250 260
....*....|....*....|....*...
gi 1958656855 1527 HSMEECEALCTRLAIMVQGQFKCLGSPQ 1554
Cdd:TIGR03269 486 HDMDFVLDVCDRAALMRDGKIVKIGDPE 513
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
1342-1546 |
1.19e-22 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 97.24 E-value: 1.19e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1342 SKVYKEKVPLLavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLT--REQPITSGDAFVKGFNIrtDMAKVQQWIGYCPEF 1419
Cdd:cd03213 15 SSPSKSGKQLL--KNVSGKAKPGELTAIMGPSGAGKSTLLNALAgrRTGLGVSGEVLINGRPL--DKRSFRKIIGYVPQD 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1420 DALLNFMTGREMLVMHARIRGIpechiktcvdmilenllmcvyadklvktySDGNKRVLSTAIALLGEPTVILLDEPSTG 1499
Cdd:cd03213 91 DILHPTLTVRETLMFAAKLRGL-----------------------------SGGERKRVSIALELVSNPSLLFLDEPTSG 141
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958656855 1500 MDPVARRLVWDAVGRVRESGKTIVITSHSM-EECEALCTRLAIMVQGQ 1546
Cdd:cd03213 142 LDSSSALQVMSLLRRLADTGRTIICSIHQPsSEIFELFDKLLLLSQGR 189
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
524-736 |
1.21e-22 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 103.95 E-value: 1.21e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYKVFytgrSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHG--CEISKDMVRIRK 601
Cdd:COG3845 5 ALELRGITKRF----GGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGkpVRIRSPRDAIAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 602 NVGWCPQHDILFDNFTVTDHL---YFYGQLKGLSHQDCHEKIEEMLHTLGLE---DKRNSRskfLSGGIKRKLAIGIALI 675
Cdd:COG3845 81 GIGMVHQHFMLVPNLTVAENIvlgLEPTKGGRLDRKAARARIRELSERYGLDvdpDAKVED---LSVGEQQRVEILKALY 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 676 AGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGD-RTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:COG3845 158 RGARILILDEPTAVLTPQEADELFEILRRLAAEgKSIIFITHKLREVMAIADRVTVLRRGKV 219
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
543-736 |
1.25e-22 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 96.73 E-value: 1.25e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVR--IRKNVGWCP---QHDILFDNFT 617
Cdd:cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRdaIRAGIAYVPedrKREGLVLDLS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 618 VTDHLyfygqlkglshqdchekieemlhTLGLedkrnsrskFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRA 697
Cdd:cd03215 95 VAENI-----------------------ALSS---------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAE 142
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958656855 698 IWDLLQQQKGD-RTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:cd03215 143 IYRLIRELADAgKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
1336-1556 |
1.60e-22 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 98.43 E-value: 1.60e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIR--TDMAKVQQWI 1413
Cdd:PRK10895 4 LTAKNLAKAYKGRR---VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISllPLHARARRGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1414 GYCPE----------FDALLNFMTGREMLVMHARirgipechiKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIA 1483
Cdd:PRK10895 81 GYLPQeasifrrlsvYDNLMAVLQIRDDLSAEQR---------EDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 1484 LLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:PRK10895 152 LAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
524-731 |
3.75e-22 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 102.40 E-value: 3.75e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYKVFytGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVR--IRK 601
Cdd:COG1129 4 LLEMRGISKSF--GGVK--ALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRdaQAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 602 NVGWCPQHDILFDNFTVTDHLYFyGQLKG----LSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAG 677
Cdd:COG1129 80 GIAIIHQELNLVPNLSVAENIFL-GREPRrgglIDWRAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRD 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 678 SKVLILDEPTSGMDSSSRRAIWDLLQQQKGD-RTVLLTTHFMDEADLLGDRIAIL 731
Cdd:COG1129 159 ARVLILDEPTASLTEREVERLFRIIRRLKAQgVAIIYISHRLDEVFEIADRVTVL 213
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
523-742 |
3.88e-22 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 97.46 E-value: 3.88e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 523 NAIEIQHLYKVF--YTGRSKCI----------------AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGH 584
Cdd:COG1134 3 SMIEVENVSKSYrlYHEPSRSLkelllrrrrtrreefwALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 585 ayihgceiskdmVRIRKNVGWcpqhdiLFD-------NFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRS 657
Cdd:COG1134 83 ------------VEVNGRVSA------LLElgagfhpELTGRENIYLNGRLLGLSRKEIDEKFDEIVEFAELGDFIDQPV 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 658 KFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSS-SRRAIWDLLQQQKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:COG1134 145 KTYSSGMRARLAFAVATAVDPDILLVDEVLAVGDAAfQKKCLARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRL 224
|
....*.
gi 1958656855 737 QCCGTP 742
Cdd:COG1134 225 VMDGDP 230
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
1336-1546 |
4.41e-22 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 96.40 E-value: 4.41e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKE-KVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNML-TREQPiTSGDAFVKGFNI----RTDMAKV 1409
Cdd:cd03255 1 IELKNLSKTYGGgGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILgGLDRP-TSGEVRVDGTDIsklsEKELAAF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1410 -QQWIGYCPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNK-RVlstAIA--LL 1485
Cdd:cd03255 80 rRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQqRV---AIAraLA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 1486 GEPTVILLDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEEcEALCTRLAIMVQGQ 1546
Cdd:cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRELnKEAGTTIVVVTHDPEL-AEYADRIIELRDGK 217
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
535-736 |
4.74e-22 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 96.77 E-value: 4.74e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 535 YTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNVGWCPQHDILF 613
Cdd:cd03248 21 YPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQyEHKYLHSKVSLVGQEPVLF 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 614 DNfTVTDHLYfYGqLKGLSHQ---------DCHEKIEEMLHtlGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:cd03248 101 AR-SLQDNIA-YG-LQSCSFEcvkeaaqkaHAHSFISELAS--GYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILD 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 685 EPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMDEADlLGDRIAILAKGEL 736
Cdd:cd03248 176 EATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
545-716 |
9.43e-22 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 95.33 E-value: 9.43e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 545 KDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKN-VGwcpQHDILFDNFTVTDHLY 623
Cdd:PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHyLG---HRNAMKPALTVAENLE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 624 FYGQLKGlshQDCHEkIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQ 703
Cdd:PRK13539 96 FWAAFLG---GEELD-IAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIR 171
|
170
....*....|....
gi 1958656855 704 -QQKGDRTVLLTTH 716
Cdd:PRK13539 172 aHLAQGGIVIAATH 185
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1353-1553 |
1.04e-21 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 96.30 E-value: 1.04e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1353 AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTR-EQPiTSGDAFVKGfnirtdmaKVQqwigycpefdALLNF------ 1425
Cdd:COG1134 41 ALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGiLEP-TSGRVEVNG--------RVS----------ALLELgagfhp 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1426 -MTGREMLVMHARIRGIPECHIKTCVDMI-----LENllmcvYADKLVKTYSDGNK-RvLSTAIALLGEPTVILLDEP-S 1497
Cdd:COG1134 102 eLTGRENIYLNGRLLGLSRKEIDEKFDEIvefaeLGD-----FIDQPVKTYSSGMRaR-LAFAVATAVDPDILLVDEVlA 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 1498 TGmDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSP 1553
Cdd:COG1134 176 VG-DAAFQKKCLARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDP 230
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
1336-1546 |
1.07e-21 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 94.18 E-value: 1.07e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDmakvqqwIGY 1415
Cdd:cd03229 1 LELKNVSKRYGQKT---VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDL-------EDE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 CPEFDALLNFMTGREMLVMHarirgipechiKTcvdmILENLLMCVyadklvktySDGNKRVLSTAIALLGEPTVILLDE 1495
Cdd:cd03229 71 LPPLRRRIGMVFQDFALFPH-----------LT----VLENIALGL---------SGGQQQRVALARALAMDPDVLLLDE 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 1496 PSTGMDPVARRLVWDAVGRVRE-SGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:cd03229 127 PTSALDPITRREVRALLKSLQAqLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
1354-1498 |
1.59e-21 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 92.71 E-value: 1.59e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1354 VNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAK-VQQWIGYCPEFDALLNFMTGREML 1432
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKsLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1433 VMHARIRGIPECHIKTCVDMILENLLMCVYADKLV----KTYSDGNKRVLSTAIALLGEPTVILLDEPST 1498
Cdd:pfam00005 81 RLGLLLKGLSKREKDARAEEALEKLGLGDLADRPVgerpGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
544-736 |
2.91e-21 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 92.66 E-value: 2.91e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNVGWCPQHDILFDNfTVTDHL 622
Cdd:cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQwDPNELGDHVGYLPQDDELFSG-SIAENI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 623 yfygqlkglshqdchekieemlhtlgledkrnsrskfLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLL 702
Cdd:cd03246 97 -------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
|
170 180 190
....*....|....*....|....*....|....*
gi 1958656855 703 QQ-QKGDRTVLLTTHFMdEADLLGDRIAILAKGEL 736
Cdd:cd03246 140 AAlKAAGATRIVIAHRP-ETLASADRILVLEDGRV 173
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1336-1568 |
2.95e-21 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 99.59 E-value: 2.95e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKvPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPIT---SGDAFVKGFNIRT-DMAKVQQ 1411
Cdd:COG1123 5 LEVRDLSVRYPGG-DVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLElSEALRGR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1412 WIGYCP-EFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTV 1490
Cdd:COG1123 84 RIGMVFqDPMTQLNPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDPDL 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 1491 ILLDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLksrFGSGYSLQA 1568
Cdd:COG1123 164 LIADEPTTALDVTTQAEILDLLRELqRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEI---LAAPQALAA 239
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1337-1562 |
3.33e-21 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 96.69 E-value: 3.33e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1337 VVKELSKVYK--EKVPLL----------------AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTreqPI---TSGDA 1395
Cdd:COG4586 3 EVENLSKTYRvyEKEPGLkgalkglfrreyreveAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLT---GIlvpTSGEV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1396 FVKGFNI---RTDMAK----V-----QQWigycpeFDallnfMTGREMLVMHARIRGIPEC----HIKTCVDMI-LENLL 1458
Cdd:COG4586 80 RVLGYVPfkrRKEFARrigvVfgqrsQLW------WD-----LPAIDSFRLLKAIYRIPDAeykkRLDELVELLdLGELL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1459 mcvyaDKLVktysdgnkRVLS--------TAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSM 1529
Cdd:COG4586 149 -----DTPV--------RQLSlgqrmrceLAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYnRERGTTILLTSHDM 215
|
250 260 270
....*....|....*....|....*....|...
gi 1958656855 1530 EECEALCTRLAIMVQGQFKCLGSPQHLKSRFGS 1562
Cdd:COG4586 216 DDIEALCDRVIVIDHGRIIYDGSLEELKERFGP 248
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
538-750 |
3.71e-21 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 94.21 E-value: 3.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 538 RSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNVGWCPQHDILFdNF 616
Cdd:cd03254 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDiSRKSLRSMIGVVLQDTFLF-SG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 617 TVTDHLyfygQLKGLSHQDchEKIEEMLHTL-----------GLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDE 685
Cdd:cd03254 92 TIMENI----RLGRPNATD--EEVIEAAKEAgahdfimklpnGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDE 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 686 PTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMD---EAdllgDRIAILAKGELQCCGTPSFLKQKYG 750
Cdd:cd03254 166 ATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLStikNA----DKILVLDDGKIIEEGTHDELLAKKG 229
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
546-742 |
3.71e-21 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 97.10 E-value: 3.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 546 DLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRI-----RKNVGWCPQHDILFDNFTVTD 620
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIflppeKRRIGYVFQEARLFPHLSVRG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 621 HL-YFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRskfLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIW 699
Cdd:TIGR02142 95 NLrYGMKRARPSERRISFERVIELLGIGHLLGRLPGR---LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1958656855 700 DLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:TIGR02142 172 PYLERlhAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPI 216
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
542-716 |
5.80e-21 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 98.97 E-value: 5.80e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 542 IAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI-SKDMVRIRKNVGWCPQHDILFDNfTVTD 620
Cdd:TIGR02868 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVsSLDQDEVRRRVSVCAQDAHLFDT-TVRE 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 621 HLYfygqlkgLSHQDC-HEKIEEMLHTLGLED-----------KRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTS 688
Cdd:TIGR02868 428 NLR-------LARPDAtDEELWAALERVGLADwlralpdgldtVLGEGGARLSGGERQRLALARALLADAPILLLDEPTE 500
|
170 180
....*....|....*....|....*...
gi 1958656855 689 GMDSSSRRAIWDLLQQQKGDRTVLLTTH 716
Cdd:TIGR02868 501 HLDAETADELLEDLLAALSGRTVVLITH 528
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
545-743 |
6.09e-21 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 99.35 E-value: 6.09e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 545 KDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPS---KGHAYIHGCEISKDMVRIRKnvGWCPQHDILFDNFTVTDH 621
Cdd:TIGR00955 42 KNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLLNGMPIDAKEMRAIS--AYVQQDDLFIPTLTVREH 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 622 LYFYGQLK---GLSHQDCHEKIEEMLHTLGLEDKRNS------RSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDS 692
Cdd:TIGR00955 120 LMFQAHLRmprRVTKKEKRERVDEVLQALGLRKCANTrigvpgRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDS 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 693 SSRRAIWDLLQQ--QKGdRTVLLTTHfMDEADL--LGDRIAILAKGELQCCGTPS 743
Cdd:TIGR00955 200 FMAYSVVQVLKGlaQKG-KTIICTIH-QPSSELfeLFDKIILMAEGRVAYLGSPD 252
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1336-1556 |
6.21e-21 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 93.94 E-value: 6.21e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIrTDM---AKVQQW 1412
Cdd:COG1137 4 LEAENLVKSYGKRT---VVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDI-THLpmhKRARLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1413 IGYCPE----FDALlnfmTGRE--MLVMhaRIRGIPECHIKTCVDMILE--NLlmcvyaDKLVKTY----SDGNKRVLST 1480
Cdd:COG1137 80 IGYLPQeasiFRKL----TVEDniLAVL--ELRKLSKKEREERLEELLEefGI------THLRKSKayslSGGERRRVEI 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1481 AIALLGEPTVILLDEPSTGMDPVA----RRLvwdaVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:COG1137 148 ARALATNPKFILLDEPFAGVDPIAvadiQKI----IRHLKERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEI 223
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
556-742 |
6.66e-21 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 96.32 E-value: 6.66e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 556 ITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGcEI---SKDMVRI---RKNVGWCPQHDILFDNFTVTDHLyFYGQlK 629
Cdd:COG4148 27 VTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGG-EVlqdSARGIFLpphRRRIGYVFQEARLFPHLSVRGNL-LYGR-K 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 630 GLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQ--QKG 707
Cdd:COG4148 104 RAPRAERRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLARKAEILPYLERlrDEL 183
|
170 180 190
....*....|....*....|....*....|....*
gi 1958656855 708 DRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:COG4148 184 DIPILYVSHSLDEVARLADHVVLLEQGRVVASGPL 218
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1344-1546 |
9.81e-21 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 93.61 E-value: 9.81e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1344 VYKEKVPLLavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSG-DAFVKGFNI-RTDMAKVQQWIGYC-PEF- 1419
Cdd:COG1119 11 VRRGGKTIL--DDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRgGEDVWELRKRIGLVsPALq 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1420 DALLNFMTGREMLV----------------MHARIRGIpechiktcvdmiLENLLMCVYADKLVKTYSDGNKRVLSTAIA 1483
Cdd:COG1119 89 LRFPRDETVLDVVLsgffdsiglyreptdeQRERAREL------------LELLGLAHLADRPFGTLSQGEQRRVLIARA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 1484 LLGEPTVILLDEPSTGMDPVARRLVWDAVGR-VRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:COG1119 157 LVKDPELLILDEPTAGLDLGARELLLALLDKlAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGR 220
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
1344-1556 |
1.16e-20 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 93.86 E-value: 1.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1344 VYKEKVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI------------RTDMAKVQQ 1411
Cdd:cd03294 30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIaamsrkelrelrRKKISMVFQ 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1412 WIGYCPEFDALLNFMTGREmlvmharIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVI 1491
Cdd:cd03294 110 SFALLPHRTVLENVAFGLE-------VQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDIL 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 1492 LLDEPSTGMDPVARRLVWDAVGR-VRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:cd03294 183 LMDEAFSALDPLIRREMQDELLRlQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1336-1554 |
1.33e-20 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 93.18 E-value: 1.33e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRT----DMAKVqq 1411
Cdd:COG1120 2 LEAENLSVGYGGRP---VLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASlsrrELARR-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1412 wIGYCP-EFDALLNFmTGREmLVMHARirgIPecHIK----------TCVDMILENLLMCVYADKLVKTYSDGNK-RVLs 1479
Cdd:COG1120 77 -IAYVPqEPPAPFGL-TVRE-LVALGR---YP--HLGlfgrpsaedrEAVEEALERTGLEHLADRPVDELSGGERqRVL- 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 1480 TAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGR-VRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1554
Cdd:COG1120 148 IARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRlARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPE 223
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
506-737 |
1.38e-20 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 97.83 E-value: 1.38e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 506 EKTSKGDFLQDEPAGHInAIEIQHLYKVFytgRSKCIaVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHa 585
Cdd:COG0488 298 DKTVEIRFPPPERLGKK-VLELEGLSKSY---GDKTL-LDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGT- 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 586 yihgceiskdmVRIRKNV--GWCPQH-DILFDNFTVTDHLyfygqlKGLSHQDCHEKIEEMLHTLGL-EDKRNSRSKFLS 661
Cdd:COG0488 372 -----------VKLGETVkiGYFDQHqEELDPDKTVLDEL------RDGAPGGTEQEVRGYLGRFLFsGDDAFKPVGVLS 434
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 662 GGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGdrTVLLTTH---FMDEadlLGDRIAILAKGELQ 737
Cdd:COG0488 435 GGEKARLALAKLLLSPPNVLLLDEPTNHLDIETLEALEEALDDFPG--TVLLVSHdryFLDR---VATRILEFEDGGVR 508
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
525-755 |
1.57e-20 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 92.55 E-value: 1.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYkvFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNV 603
Cdd:cd03252 1 ITFEHVR--FRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALaDPAWLRRQV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILF-----DNFTVTDhlyfygqlKGLSHQ---------DCHEKIEEMlhTLGLEDKRNSRSKFLSGGIKRKLA 669
Cdd:cd03252 79 GVVLQENVLFnrsirDNIALAD--------PGMSMErvieaaklaGAHDFISEL--PEGYDTIVGEQGAGLSGGQRQRIA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 670 IGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMdEADLLGDRIAILAKGELQCCGTPSFLKQKY 749
Cdd:cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRL-STVKNADRIIVMEKGRIVEQGSHDELLAEN 227
|
....*.
gi 1958656855 750 GAGYYM 755
Cdd:cd03252 228 GLYAYL 233
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
525-742 |
1.97e-20 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 95.29 E-value: 1.97e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFyTGRSkciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISkDMVRIRKNVG 604
Cdd:PRK11607 20 LEIRNLTKSF-DGQH---AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS-HVPPYQRPIN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLD 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 685 EPTSGMDSSSRraiwDLLQQQKGD------RTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:PRK11607 175 EPMGALDKKLR----DRMQLEVVDilervgVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEP 234
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
525-736 |
2.84e-20 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 91.47 E-value: 2.84e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRSkciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVR----IR 600
Cdd:PRK10908 2 IRFEHVSKAYLGGRQ---ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRevpfLR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 KNVGWCPQ-HDILFDNfTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSK 679
Cdd:PRK10908 79 RQIGMIFQdHHLLMDR-TVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 680 VLILDEPTSGMDSSSRRAIWDLLQQ-QKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEfNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
543-772 |
3.22e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 92.92 E-value: 3.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI---SKDMV--RIRKNVGWCPQ--HDILFDN 615
Cdd:PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIthkTKDKYirPVRKRIGMVFQfpESQLFED 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 616 fTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKF-LSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSS 694
Cdd:PRK13646 102 -TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFqMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 695 RRAIWDLLQ--QQKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPsflKQKYGAGYYMTIIKTPLCDTEKLAKVI 772
Cdd:PRK13646 181 KRQVMRLLKslQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP---KELFKDKKKLADWHIGLPEIVQLQYDF 257
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
518-736 |
3.41e-20 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 92.02 E-value: 3.41e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 518 PAGHINAIEIQHLyKVFYTGRSkciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVL---TGLIPPSK--GHAYIHGCEI 592
Cdd:COG1117 5 ASTLEPKIEVRNL-NVYYGDKQ---ALKDINLDIPENKVTALIGPSGCGKSTLLRCLnrmNDLIPGARveGEILLDGEDI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 593 ---SKDMVRIRKNVGWCPQ------HDIlFDNFTvtdhlyfYG-QLKGL-SHQDCHEKIEEMLHTLGL----EDKRNSRS 657
Cdd:COG1117 81 ydpDVDVVELRRRVGMVFQkpnpfpKSI-YDNVA-------YGlRLHGIkSKSELDEIVEESLRKAALwdevKDRLKKSA 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 658 KFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:COG1117 153 LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKDYTIVIVTHNMQQAARVSDYTAFFYLGEL 231
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
547-716 |
4.72e-20 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 90.11 E-value: 4.72e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 547 LSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVGWCPQHDILFDNFTVTDHLYFYG 626
Cdd:TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYLGHLPGLKPELSALENLHFWA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 627 QLkglsHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQ-- 704
Cdd:TIGR01189 99 AI----HGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVALLAGLLRAhl 174
|
170
....*....|..
gi 1958656855 705 QKGDrTVLLTTH 716
Cdd:TIGR01189 175 ARGG-IVLLTTH 185
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
524-734 |
5.42e-20 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 91.30 E-value: 5.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYkVFYTGRSkciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGhayihgcEISKDMVRIR--- 600
Cdd:PRK11248 1 MLQISHLY-ADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG-------SITLDGKPVEgpg 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 KNVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKV 680
Cdd:PRK11248 70 AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 681 LILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAKG 734
Cdd:PRK11248 150 LLLDEPFGALDAFTREQMQTLLLKlwQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1336-1546 |
5.63e-20 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 90.64 E-value: 5.63e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKV-PLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQQW-- 1412
Cdd:cd03257 2 LEVKNLSVSFPTGGgSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIrr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1413 --IGYCPEfDAL--LNF-MTGREML--VMHARIRGIPECHIKTCVDMILENLLMcvyADKLVKTY----SDGNKRVLSTA 1481
Cdd:cd03257 82 keIQMVFQ-DPMssLNPrMTIGEQIaePLRIHGKLSKKEARKEAVLLLLVGVGL---PEEVLNRYphelSGGQRQRVAIA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 1482 IALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVR-ESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQeELGLTLLFITHDLGVVAKIADRVAVMYAGK 223
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
544-743 |
9.88e-20 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 90.56 E-value: 9.88e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK----DMVRIRknvGWCPQHDIL-FDnFTV 618
Cdd:COG4559 17 LDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAwspwELARRR---AVLPQHSSLaFP-FTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 619 TD--------HlyfygqlkGLSHQDCHEKIEEMLHTLGLED--KRNSRSkfLSGGIK------RKLA-IGIALIAGSKVL 681
Cdd:COG4559 93 EEvvalgrapH--------GSSAAQDRQIVREALALVGLAHlaGRSYQT--LSGGEQqrvqlaRVLAqLWEPVDGGPRWL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 682 ILDEPTSGMDSSSRRAIWDLLQQ--QKGdRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPS 743
Cdd:COG4559 163 FLDEPTSALDLAHQHAVLRLARQlaRRG-GGVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPE 225
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
525-755 |
1.03e-19 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 89.98 E-value: 1.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRskcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNV 603
Cdd:cd03253 1 IEFENVTFAYDPGR---PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREvTLDSLRRAI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILFDNfTVTDHLYfYGQLKGLSHQ--------DCHEKIEEMlhTLGLEDKRNSRSKFLSGGIKRKLAIGIALI 675
Cdd:cd03253 78 GVVPQDTVLFND-TIGYNIR-YGRPDATDEEvieaakaaQIHDKIMRF--PDGYDTIVGERGLKLSGGEKQRVAIARAIL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 676 AGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTH----FMDeadllGDRIAILAKGELQCCGTPSFLKQKYGA 751
Cdd:cd03253 154 KNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHrlstIVN-----ADKIIVLKDGRIVERGTHEELLAKGGL 228
|
....
gi 1958656855 752 GYYM 755
Cdd:cd03253 229 YAEM 232
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
1336-1546 |
1.04e-19 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 88.21 E-value: 1.04e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKvPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRT-DMAKVQQWIG 1414
Cdd:cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDlDLESLRKNIA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1415 YCPEFDALLNfmtgremlvmharirgipechiktcvDMILENLLmcvyadklvktySDGNKRVLSTAIALLGEPTVILLD 1494
Cdd:cd03228 80 YVPQDPFLFS--------------------------GTIRENIL------------SGGQRQRIAIARALLRDPPILILD 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 1495 EPSTGMDPVARRLVWDAVGRVREsGKTIVITSHSMEECEaLCTRLAIMVQGQ 1546
Cdd:cd03228 122 EATSALDPETEALILEALRALAK-GKTVIVIAHRLSTIR-DADRIIVLDDGR 171
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
518-716 |
1.23e-19 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 94.66 E-value: 1.23e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 518 PAGHINAIEIQHLyKVFYTGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DM 596
Cdd:TIGR02857 315 TAAPASSLEFSGV-SVAYPGRRP--ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADaDA 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 597 VRIRKNVGWCPQHDILFDNfTVTDHLYFY------GQLKGLSHQDChekIEEMLHTL--GLEDKRNSRSKFLSGGIKRKL 668
Cdd:TIGR02857 392 DSWRDQIAWVPQHPFLFAG-TIAENIRLArpdasdAEIREALERAG---LDEFVAALpqGLDTPIGEGGAGLSGGQAQRL 467
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958656855 669 AIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTH 716
Cdd:TIGR02857 468 ALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTH 515
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
520-751 |
1.24e-19 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 92.49 E-value: 1.24e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 520 GHINAIEIQHLYKVFytGRSKciAVKDLSMNLYKGQITVLLGHNGAgkttvcSVLTGLIPpskghAYIHGCEISKDMVRI 599
Cdd:NF000106 9 GARNAVEVRGLVKHF--GEVK--AVDGVDLDVREGTVLGVLGP*GA------A**RGALP-----AHV*GPDAGRRPWRF 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 600 RKnvgWCPQHDILF--------------DNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIK 665
Cdd:NF000106 74 *T---WCANRRALRrtig*hrpvr*grrESFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 666 RKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGD-RTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSF 744
Cdd:NF000106 151 RRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDgATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDE 230
|
....*..
gi 1958656855 745 LKQKYGA 751
Cdd:NF000106 231 LKTKVGG 237
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
525-742 |
1.28e-19 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 89.48 E-value: 1.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLyKVFYTGRSKcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNV 603
Cdd:cd03244 3 IEFKNV-SLRYRPNLP-PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKiGLHDLRSRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILFDNfTVTDHLYFYGQlkglsHQDchEKIEEMLHT-----------LGLEDKRNSRSKFLSGGIKRKLAIGI 672
Cdd:cd03244 81 SIIPQDPVLFSG-TIRSNLDPFGE-----YSD--EELWQALERvglkefveslpGGLDTVVEEGGENLSVGQRQLLCLAR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 673 ALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTH----FMDEadllgDRIAILAKGELQCCGTP 742
Cdd:cd03244 153 ALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHrldtIIDS-----DRILVLDKGRVVEFDSP 221
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1336-1546 |
1.28e-19 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 89.66 E-value: 1.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEkvpLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIrTDMA---KVQQW 1412
Cdd:COG0410 4 LEVENLHAGYGG---IHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDI-TGLPphrIARLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1413 IGYCPEFDALLNFMTGREMLVMHARIRGIPEcHIKTCVDMILE---NLlmcvyADKL---VKTYSDGNKRVLSTAIALLG 1486
Cdd:COG0410 80 IGYVPEGRRIFPSLTVEENLLLGAYARRDRA-EVRADLERVYElfpRL-----KERRrqrAGTLSGGEQQMLAIGRALMS 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1487 EPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:COG0410 154 RPKLLLLDEPSLGLAPLIVEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGR 213
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
544-741 |
2.12e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 89.72 E-value: 2.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIP--PSK----GHAYIHGCEISK-DMVRIRKNVGWCPQHDILFDNF 616
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiyDSKikvdGKVLYFGKDIFQiDAIKLRKEVGMVFQQPNPFPHL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 617 TVTDHLYFYGQLKGLSHQDCHEKI-EEMLHTLGL----EDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMD 691
Cdd:PRK14246 106 SIYDNIAYPLKSHGIKEKREIKKIvEECLRKVGLwkevYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958656855 692 SSSRRAIWDLLQQQKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGT 741
Cdd:PRK14246 186 IVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS 235
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
543-742 |
2.32e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 90.45 E-value: 2.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS------KDMVRIRKNVGWC---PQHDILF 613
Cdd:PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPanlkkiKEVKRLRKEIGLVfqfPEYQLFQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 614 DnfTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKF-LSGGIKRKLAIGIALIAGSKVLILDEPTSGMDS 692
Cdd:PRK13645 106 E--TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFeLSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 693 SSRRAIWDL---LQQQKGDRtVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:PRK13645 184 KGEEDFINLferLNKEYKKR-IIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1336-1556 |
3.34e-19 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 93.43 E-value: 3.34e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVP--LLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRT----DMAKV 1409
Cdd:COG1123 261 LEVRNLSKRYPVRGKggVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKlsrrSLREL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1410 QQWIGYC---PeFDALLNFMTGREMLVMHARIRGI-PECHIKTCVDMILENL-LMCVYADKLVKTYSDGNKRVLSTAIAL 1484
Cdd:COG1123 341 RRRVQMVfqdP-YSSLNPRMTVGDIIAEPLRLHGLlSRAERRERVAELLERVgLPPDLADRYPHELSGGQRQRVAIARAL 419
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 1485 LGEPTVILLDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:COG1123 420 ALEPKLLILDEPTSALDVSVQAQILNLLRDLqRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEV 492
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
535-755 |
4.07e-19 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 88.37 E-value: 4.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 535 YTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVR-IRKNVGWCPQHDILF 613
Cdd:cd03249 10 YPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRwLRSQIGLVSQEPVLF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 614 DNfTVTDHLYfYGQLKGLSHQD--------CHEKIEemlhtlGLEDKRNS----RSKFLSGGIKRKLAIGIALIAGSKVL 681
Cdd:cd03249 90 DG-TIAENIR-YGKPDATDEEVeeaakkanIHDFIM------SLPDGYDTlvgeRGSQLSGGQKQRIAIARALLRNPKIL 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 682 ILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHfmdeaDLL----GDRIAILAKGELQCCGTPSFLKQKYGAgYYM 755
Cdd:cd03249 162 LLDEATSALDAESEKLVQEALDRAMKGRTTIVIAH-----RLStirnADLIAVLQNGQVVEQGTHDELMAQKGV-YAK 233
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
1319-1546 |
4.45e-19 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 87.97 E-value: 4.45e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1319 EAENI--KYHLDTLiKKSPLVVKELSKVYKEKVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAF 1396
Cdd:cd03220 2 ELENVskSYPTYKG-GSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1397 VKGfnirtdmaKVqqwigyCPEFDALLNF---MTGREMLVMHARIRGIPECHIKTCVDMI-----LENllmcvYADKLVK 1468
Cdd:cd03220 81 VRG--------RV------SSLLGLGGGFnpeLTGRENIYLNGRLLGLSRKEIDEKIDEIiefseLGD-----FIDLPVK 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 1469 TYSDGNKRVLSTAIALLGEPTVILLDEP-STGmDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:cd03220 142 TYSSGMKARLAFAIATALEPDILLIDEVlAVG-DAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGK 219
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
525-743 |
4.66e-19 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 88.92 E-value: 4.66e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYkvfyTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVR-IRKNV 603
Cdd:PRK11231 3 LRTENLT----VGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRqLARRL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILFDNFTVTD--------HLYFYGQLKGLSHQDCHEKIEEMlHTLGLEDKRNSRskfLSGGIKRKLAIGIALI 675
Cdd:PRK11231 79 ALLPQHHLTPEGITVRElvaygrspWLSLWGRLSAEDNARVNQAMEQT-RINHLADRRLTD---LSGGQRQRAFLAMVLA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 676 AGSKVLILDEPTSGMDSSSRRAIWDLLQQ--QKGdRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPS 743
Cdd:PRK11231 155 QDTPVVLLDEPTTYLDINHQVELMRLMRElnTQG-KTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPE 223
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
543-742 |
6.28e-19 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 92.92 E-value: 6.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNVGWCPQHDILFdNFTVTDH 621
Cdd:COG1132 355 VLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDlTLESLRRQIGVVPQDTFLF-SGTIREN 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 622 LyFYGQlKGLSHQD---------CHEKIEEM---LHT-LGledkrnSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTS 688
Cdd:COG1132 434 I-RYGR-PDATDEEveeaakaaqAHEFIEALpdgYDTvVG------ERGVNLSGGQRQRIAIARALLKDPPILILDEATS 505
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 689 GMDSSSRRAIWDLLQQQKGDRTVLLTTH------FMdeadllgDRIAILAKGELQCCGTP 742
Cdd:COG1132 506 ALDTETEALIQEALERLMKGRTTIVIAHrlstirNA-------DRILVLDDGRIVEQGTH 558
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
543-716 |
8.66e-19 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 87.29 E-value: 8.66e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNVGWCPQHDILFDNfTVTDH 621
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDyTLASLRRQIGLVSQDVFLFND-TVAEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 622 LYfYGQLkGLSHQD---------CHEKIEEMlhTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDS 692
Cdd:cd03251 96 IA-YGRP-GATREEveeaaraanAHEFIMEL--PEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDT 171
|
170 180
....*....|....*....|....
gi 1958656855 693 SSRRAIWDLLQQQKGDRTVLLTTH 716
Cdd:cd03251 172 ESERLVQAALERLMKNRTTFVIAH 195
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
524-751 |
1.31e-18 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 87.52 E-value: 1.31e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYkvfYTgRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS----KDMVRI 599
Cdd:PRK13548 2 MLEARNLS---VR-LGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAdwspAELARR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 600 RknvGWCPQHDIL-FDnFTVTD--------HlyfygqlkGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIK----- 665
Cdd:PRK13548 78 R---AVLPQHSSLsFP-FTVEEvvamgrapH--------GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQqrvql 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 666 -RKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDR--TVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:PRK13548 146 aRVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERglAVIVVLHDLNLAARYADRIVLLHQGRLVADGTP 225
|
250
....*....|....*
gi 1958656855 743 S------FLKQKYGA 751
Cdd:PRK13548 226 AevltpeTLRRVYGA 240
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1338-1556 |
1.33e-18 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 86.87 E-value: 1.33e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1338 VKELSKVYKE-KVPLLAVNKVSFVVKEKECFGLLGLNGAGKTS---IFNMLtrEQPiTSGDAFVKGFNI----RTDMAKV 1409
Cdd:cd03258 4 LKNVSKVFGDtGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTlirCINGL--ERP-TSGSVLVDGTDLtllsGKELRKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1410 QQWIGYCPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPT 1489
Cdd:cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 1490 VILLDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:cd03258 161 VLLCDEATSALDPETTQSILALLRDInRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
530-742 |
1.34e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 87.74 E-value: 1.34e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 530 LYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHG---CEISKdMVRIRKNVGWC 606
Cdd:PRK13644 4 LENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGidtGDFSK-LQGIRKLVGIV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 607 PQH-DILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDE 685
Cdd:PRK13644 83 FQNpETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 686 PTSGMDSSSRRAIWDLLQQ--QKGdRTVLLTTHFMDEADlLGDRIAILAKGELQCCGTP 742
Cdd:PRK13644 163 VTSMLDPDSGIAVLERIKKlhEKG-KTIVYITHNLEELH-DADRIIVMDRGKIVLEGEP 219
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
1336-1560 |
1.35e-18 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 86.91 E-value: 1.35e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIrTDMAKVQQWIGY 1415
Cdd:cd03300 1 IELENVSKFYGGFV---ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI-TNLPPHKRPVNT 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 CPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDE 1495
Cdd:cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1496 PSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL----KSRF 1560
Cdd:cd03300 157 PLGALDLKLRKDMQLELKRLqKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIyeepANRF 226
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
1427-1569 |
1.42e-18 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 89.41 E-value: 1.42e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1427 TGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARR 1506
Cdd:NF000106 102 SGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRN 181
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 1507 LVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSRFGsGYSLQAK 1569
Cdd:NF000106 182 EVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKVG-GRTLQIR 243
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
1338-1527 |
1.72e-18 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 86.17 E-value: 1.72e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1338 VKELSKVYKEKVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLT---REQPITSGDAFVKGFNIRTDmaKVQQWIG 1414
Cdd:cd03234 7 WDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISgrvEGGGTTSGQILFNGQPRKPD--QFQKCVA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1415 YCPEFDALLNFMTGREMLVMHARIRGiPECH-----IKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPT 1489
Cdd:cd03234 85 YVRQDDILLPGLTVRETLTYTAILRL-PRKSsdairKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPK 163
|
170 180 190
....*....|....*....|....*....|....*...
gi 1958656855 1490 VILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSH 1527
Cdd:cd03234 164 VLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIH 201
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
525-745 |
1.86e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 87.46 E-value: 1.86e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLykVF-YTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMV-RIRKN 602
Cdd:PRK13642 5 LEVENL--VFkYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVwNLRRK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 603 VGWCPQH-DILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVL 681
Cdd:PRK13642 83 IGMVFQNpDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 682 ILDEPTSGMDSSSRRAIWDLLQQQKGDR--TVLLTTHFMDEAdLLGDRIAILAKGELQCCGTPSFL 745
Cdd:PRK13642 163 ILDESTSMLDPTGRQEIMRVIHEIKEKYqlTVLSITHDLDEA-ASSDRILVMKAGEIIKEAAPSEL 227
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
523-745 |
2.58e-18 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 88.62 E-value: 2.58e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 523 NAIEIQHLYKVFytGRSKCIavKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRirkn 602
Cdd:PRK11432 5 NFVVLKNITKRF--GSNTVI--DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 603 vgwcpQHDI--LFDNFTVTDHLYF-----YG-QLKGLSHQDCHEKIEEMLHTL---GLEDKRNSRskfLSGGIKRKLAIG 671
Cdd:PRK11432 77 -----QRDIcmVFQSYALFPHMSLgenvgYGlKMLGVPKEERKQRVKEALELVdlaGFEDRYVDQ---ISGGQQQRVALA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 672 IALIAGSKVLILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFL 745
Cdd:PRK11432 149 RALILKPKVLLFDEPLSNLDANLRRSMREKIRelQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
1336-1542 |
3.14e-18 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 85.22 E-value: 3.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEK-VPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGdafvkgfNIRTDMAKVQQW-- 1412
Cdd:cd03293 1 LEVRNVSKTYGGGgGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG-------EVLVDGEPVTGPgp 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1413 -IGYCPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVI 1491
Cdd:cd03293 74 dRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 1492 LLDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEECEALCTRLAIM 1542
Cdd:cd03293 154 LLDEPFSALDALTREQLQEELLDIwRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
553-734 |
3.16e-18 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 84.60 E-value: 3.16e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 553 KGQITVLLGHNGAGKTTVCSVL-----TGLIppsKGHAYIHGCEISKDMVRIrknVGWCPQHDILFDNFTVTDHLYFYGQ 627
Cdd:cd03232 32 PGTLTALMGESGAGKTTLLDVLagrktAGVI---TGEILINGRPLDKNFQRS---TGYVEQQDVHSPNLTVREALRFSAL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 628 LKGLShqdchekIEEmlhtlgledkrnsrskflsggiKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKG 707
Cdd:cd03232 106 LRGLS-------VEQ----------------------RKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD 156
|
170 180 190
....*....|....*....|....*....|
gi 1958656855 708 D-RTVLLTTHfMDEADLLG--DRIAILAKG 734
Cdd:cd03232 157 SgQAILCTIH-QPSASIFEkfDRLLLLKRG 185
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
1336-1551 |
6.70e-18 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 84.23 E-value: 6.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGfnirTDMAKVQqwigy 1415
Cdd:cd03301 1 VELENVTKRFGNVT---ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG----RDVTDLP----- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 cPE-------FD--ALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLG 1486
Cdd:cd03301 69 -PKdrdiamvFQnyALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVR 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 1487 EPTVILLDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLG 1551
Cdd:cd03301 148 EPKVFLMDEPLSNLDAKLRVQMRAELKRLqQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
523-736 |
7.15e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 85.35 E-value: 7.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 523 NAIEIQHLYKVFytGRSKCIavKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLI-----PPSKGHAYIHGCEISK-DM 596
Cdd:PRK14247 2 NKIEIRDLKVSF--GQVEVL--DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIelypeARVSGEVYLDGQDIFKmDV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 597 VRIRKNVGWCPQHDILFDNFTVTDHLYFYGQLKGL--SHQDCHEKIEEMLHTLGL----EDKRNSRSKFLSGGIKRKLAI 670
Cdd:PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLvkSKKELQERVRWALEKAQLwdevKDRLDAPAGKLSGGQQQRLCI 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 671 GIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:PRK14247 158 ARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQI 223
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
525-740 |
7.59e-18 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 89.07 E-value: 7.59e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytgrSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRI--RKN 602
Cdd:PRK09700 6 ISMAGIGKSF----GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLaaQLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 603 VGWCPQHDILFDNFTVTDHLYFyGQLK-----GLSHQDCHE---KIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIAL 674
Cdd:PRK09700 82 IGIIYQELSVIDELTVLENLYI-GRHLtkkvcGVNIIDWREmrvRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 675 IAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGD-RTVLLTTHFMDEADLLGDRIAILAKGELQCCG 740
Cdd:PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEgTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
1338-1551 |
8.04e-18 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 82.87 E-value: 8.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1338 VKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTdmakvqqwigycp 1417
Cdd:cd03214 2 VENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1418 efdallnfMTGREMlvmhARIRGIpechiktcVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPS 1497
Cdd:cd03214 66 --------LSPKEL----ARKIAY--------VPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPT 125
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 1498 TGMDP--------VARRLvwdavgrVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLG 1551
Cdd:cd03214 126 SHLDIahqielleLLRRL-------ARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
525-755 |
1.45e-17 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 89.01 E-value: 1.45e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYkvF-YTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKN 602
Cdd:TIGR00958 479 IEFQDVS--FsYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQyDHHYLHRQ 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 603 VGWCPQHDILFdNFTVTDHLYfYG-------QLKGLSHQ-DCHEKIEEMLHtlGLEDKRNSRSKFLSGGIKRKLAIGIAL 674
Cdd:TIGR00958 557 VALVGQEPVLF-SGSVRENIA-YGltdtpdeEIMAAAKAaNAHDFIMEFPN--GYDTEVGEKGSQLSGGQKQRIAIARAL 632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 675 IAGSKVLILDEPTSGMDSSSRRaiwdLLQQQK--GDRTVLLTTHFMDEADlLGDRIAILAKGELQCCGTPSFLKQKYGAG 752
Cdd:TIGR00958 633 VRKPRVLILDEATSALDAECEQ----LLQESRsrASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQLMEDQGCY 707
|
...
gi 1958656855 753 YYM 755
Cdd:TIGR00958 708 KHL 710
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
546-734 |
1.49e-17 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 83.31 E-value: 1.49e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 546 DLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKdMVRIRKNVGWCPQHDILFDNFTVTDH--LY 623
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTA-APPADRPVSMLFQENNLFAHLTVEQNvgLG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 624 FYGQLKgLSHQDcHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLL- 702
Cdd:cd03298 95 LSPGLK-LTAED-RQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVl 172
|
170 180 190
....*....|....*....|....*....|....*
gi 1958656855 703 ---QQQKgdRTVLLTTHFMDEADLLGDRIAILAKG 734
Cdd:cd03298 173 dlhAETK--MTVLMVTHQPEDAKRLAQRVVFLDNG 205
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
525-741 |
1.50e-17 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 88.62 E-value: 1.50e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLyKVFYTGRSKCiAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVR-IRKNV 603
Cdd:TIGR02203 331 VEFRNV-TFRYPGRDRP-ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLAsLRRQV 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILFDNfTVTDHLYfYGQLKGLSHqdchEKIEEMLHT-----------LGLEDKRNSRSKFLSGGIKRKLAIGI 672
Cdd:TIGR02203 409 ALVSQDVVLFND-TIANNIA-YGRTEQADR----AEIERALAAayaqdfvdklpLGLDTPIGENGVLLSGGQRQRLAIAR 482
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 673 ALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMDEADlLGDRIAILAKGELQCCGT 741
Cdd:TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIVERGT 550
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
540-752 |
1.58e-17 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 89.03 E-value: 1.58e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 540 KCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGceisKDM--VRIRKNVgwCPQhdI------ 611
Cdd:NF033858 13 KTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVEVLG----GDMadARHRRAV--CPR--Iaympqg 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 612 ----LFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPT 687
Cdd:NF033858 85 lgknLYPTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPT 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 688 SGMDSSSRRAIWDL---LQQQKGDRTVLLTTHFMDEADLLgDRIAILAKGELQCCGTPSFLKQKYGAG 752
Cdd:NF033858 165 TGVDPLSRRQFWELidrIRAERPGMSVLVATAYMEEAERF-DWLVAMDAGRVLATGTPAELLARTGAD 231
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
543-736 |
2.16e-17 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 81.59 E-value: 2.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVGWCPQHDILFDNftvtdhl 622
Cdd:cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDT------- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 623 yfygqlkglshqdchekieemlhTLgledkRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLL 702
Cdd:cd03247 90 -----------------------TL-----RNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141
|
170 180 190
....*....|....*....|....*....|....*...
gi 1958656855 703 QQQKGDRTVLLTTHfmdeaDLLG----DRIAILAKGEL 736
Cdd:cd03247 142 FEVLKDKTLIWITH-----HLTGiehmDKILFLENGKI 174
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
1338-1557 |
2.52e-17 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 82.93 E-value: 2.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1338 VKELSKVYKEKVPLlavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI----RTDMAKVQQWI 1413
Cdd:cd03261 3 LRGLTKSFGGRTVL---KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDIsglsEAELYRLRRRM 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1414 GYCPEFDALLNFMTGRE----MLVMHARIrgiPECHIKTCVDMILENLLMCVYADKLVKTYSDG-NKRV-LSTAIALlgE 1487
Cdd:cd03261 80 GMLFQSGALFDSLTVFEnvafPLREHTRL---SEEEIREIVLEKLEAVGLRGAEDLYPAELSGGmKKRVaLARALAL--D 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 1488 PTVILLDEPSTGMDPVARRLVWDAVGRVRES-GKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLK 1557
Cdd:cd03261 155 PELLLYDEPTAGLDPIASGVIDDLIRSLKKElGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1336-1546 |
2.52e-17 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 80.94 E-value: 2.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKekvPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKG--FNIRTdmakvqqwi 1413
Cdd:cd03216 1 LELRGITKRFG---GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGkeVSFAS--------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1414 gycpefdallnfmtgremlVMHARIRGIpechiktcvdmilenllMCVYadklvkTYSDGNKRVLSTAIALLGEPTVILL 1493
Cdd:cd03216 69 -------------------PRDARRAGI-----------------AMVY------QLSVGERQMVEIARALARNARLLIL 106
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 1494 DEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:cd03216 107 DEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGR 159
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
540-736 |
3.19e-17 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 83.00 E-value: 3.19e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 540 KCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRI-RKNVGWCPQHDILFDNFT 617
Cdd:PRK11614 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDwQTAKImREAVAIVPEGRRVFSRMT 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 618 VTDHLYFYGQLKglSHQDCHEKIEEMLHTLG-LEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRR 696
Cdd:PRK11614 97 VEENLAMGGFFA--ERDQFQERIKWVYELFPrLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ 174
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958656855 697 AIWDLLQQQKGD-RTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:PRK11614 175 QIFDTIEQLREQgMTIFLVEQNANQALKLADRGYVLENGHV 215
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
546-735 |
3.76e-17 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 82.50 E-value: 3.76e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 546 DLSMNlyKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGceisKDMVRIRknvgwcP---------QHDILFDNF 616
Cdd:COG3840 19 DLTIA--AGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNG----QDLTALP------PaerpvsmlfQENNLFPHL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 617 TVTDHLYFyG---QLKgLSHQDcHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSS 693
Cdd:COG3840 87 TVAQNIGL-GlrpGLK-LTAEQ-RAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEPFSALDPA 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1958656855 694 SRRAIWDLLQQQKGDR--TVLLTTHFMDEADLLGDRIAILAKGE 735
Cdd:COG3840 164 LRQEMLDLVDELCRERglTVLMVTHDPEDAARIADRVLLVADGR 207
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1334-1560 |
5.95e-17 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 84.89 E-value: 5.95e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1334 SPLV-VKELSKVYKEKvplLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTR-EQPiTSGDAFVKGFNIrTDMAKVQQ 1411
Cdd:PRK11607 17 TPLLeIRNLTKSFDGQ---HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGfEQP-TAGQIMLDGVDL-SHVPPYQR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1412 WIGYCPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVI 1491
Cdd:PRK11607 92 PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLL 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 1492 LLDEPSTGMDPVAR-RLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSP----QHLKSRF 1560
Cdd:PRK11607 172 LLDEPMGALDKKLRdRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPeeiyEHPTTRY 245
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
545-737 |
5.98e-17 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 86.27 E-value: 5.98e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 545 KDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHayihgceiskdmVRIRKN--VGWCPQHDILFDNFTVTD-- 620
Cdd:COG0488 15 DDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGE------------VSIPKGlrIGYLPQEPPLDDDLTVLDtv 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 621 ------------------HLYFYGQLKGLSHQDCHEKIEEM------------LHTLGL-EDKRNSRSKFLSGGIKRKLA 669
Cdd:COG0488 83 ldgdaelraleaeleeleAKLAEPDEDLERLAELQEEFEALggweaearaeeiLSGLGFpEEDLDRPVSELSGGWRRRVA 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 670 IGIALIAGSKVLILDEPTSGMDSSSRRaiW--DLLQQQKGdrTVLLTTH---FMDEadlLGDRIAILAKGELQ 737
Cdd:COG0488 163 LARALLSEPDLLLLDEPTNHLDLESIE--WleEFLKNYPG--TVLVVSHdryFLDR---VATRILELDRGKLT 228
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
524-691 |
9.30e-17 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 81.60 E-value: 9.30e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYKvFYTGRSkciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS-------KDM 596
Cdd:COG4161 2 SIQLKNINC-FYGSHQ---ALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQFDfsqkpseKAI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 597 VRIRKNVGWCPQHDILFDNFTVTDHLYFYG-QLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALI 675
Cdd:COG4161 78 RLLRQKVGMVFQQYNLWPHLTVMENLIEAPcKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALM 157
|
170
....*....|....*.
gi 1958656855 676 AGSKVLILDEPTSGMD 691
Cdd:COG4161 158 MEPQVLLFDEPTAALD 173
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1336-1557 |
9.62e-17 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 81.56 E-value: 9.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVPLlavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI----RTDMAKVQQ 1411
Cdd:COG1127 6 IEVRNLTKSFGDRVVL---DGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDItglsEKELYELRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1412 WIGYCPEFDALLNFMTGRE----MLVMHariRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDG-NKRV-LSTAIALl 1485
Cdd:COG1127 83 RIGMLFQGGALFDSLTVFEnvafPLREH---TDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGmRKRVaLARALAL- 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 1486 gEPTVILLDEPSTGMDPVARRLVWDAVGRVRES-GKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLK 1557
Cdd:COG1127 159 -DPEILLYDEPTAGLDPITSAVIDELIRELRDElGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELL 230
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
1335-1553 |
1.05e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 82.40 E-value: 1.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1335 PLVVKELSKVYKEKVPL--LAVNKVSFVVKEKECFGLLGLNGAGKTSI---FNMLTREqpiTSGDAFVKGFNI---RTDM 1406
Cdd:PRK13637 2 SIKIENLTHIYMEGTPFekKALDNVNIEIEDGEFVGLIGHTGSGKSTLiqhLNGLLKP---TSGKIIIDGVDItdkKVKL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1407 AKVQQWIG----YcPEFDalLNFMTGREMLVMHARIRGIPECHIKTCV--DMILENLLMCVYADKLVKTYSDGNKRVLST 1480
Cdd:PRK13637 79 SDIRKKVGlvfqY-PEYQ--LFEETIEKDIAFGPINLGLSEEEIENRVkrAMNIVGLDYEDYKDKSPFELSGGQKRRVAI 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 1481 AIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGK-TIVITSHSMEECEALCTRLAIMVQGQFKCLGSP 1553
Cdd:PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNmTIILVSHSMEDVAKLADRIIVMNKGKCELQGTP 229
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
535-736 |
1.14e-16 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 81.75 E-value: 1.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 535 YTGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLT---GLIP--PSKGHAYIHGCEI---SKDMVRIRKNVGWC 606
Cdd:PRK14239 14 YYNKKK--ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINrmnDLNPevTITGSIVYNGHNIyspRTDTVDLRKEIGMV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 607 PQHDILFDnFTVTDHLYFYGQLKGL-SHQDCHEKIEEMLHTLGL----EDKRNSRSKFLSGGIKRKLAIGIALIAGSKVL 681
Cdd:PRK14239 92 FQQPNPFP-MSIYENVVYGLRLKGIkDKQVLDEAVEKSLKGASIwdevKDRLHDSALGLSGGQQQRVCIARVLATSPKII 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 682 ILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:PRK14239 171 LLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDL 225
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
1336-1554 |
1.18e-16 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 81.23 E-value: 1.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLT-REQPiTSGDAFVKGFNIrTDMAKVQQWIG 1414
Cdd:cd03296 3 IEVRNVSKRFGDFV---ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAgLERP-DSGTILFGGEDA-TDVPVQERNVG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1415 YCPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTY----SDGNKRVLSTAIALLGEPTV 1490
Cdd:cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYpaqlSGGQRQRVALARALAVEPKV 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 1491 ILLDEPSTGMDPVARRLVWDAVGRVR-ESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1554
Cdd:cd03296 158 LLLDEPFGALDAKVRKELRRWLRRLHdELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1338-1558 |
1.58e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 81.96 E-value: 1.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1338 VKELSKVYKEKVPllAVNKVSFVVKEKECFGLLGLNGAGKTSI---FNMLTREQpitSGDAFVKGFNIrTDMAKVQ---- 1410
Cdd:PRK13644 4 LENVSYSYPDGTP--ALENINLVIKKGEYIGIIGKNGSGKSTLalhLNGLLRPQ---KGKVLVSGIDT-GDFSKLQgirk 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1411 -----------QWIGYCPEFDalLNFmtGREMLVMharirgiPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLS 1479
Cdd:PRK13644 78 lvgivfqnpetQFVGRTVEED--LAF--GPENLCL-------PPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVA 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 1480 TAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEAlCTRLAIMVQGQFKCLGSPQHLKS 1558
Cdd:PRK13644 147 LAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENVLS 224
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
530-737 |
1.62e-16 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 80.63 E-value: 1.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 530 LYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS------KDMVRIRKnV 603
Cdd:PRK11629 11 LCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSklssaaKAELRNQK-L 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLIL 683
Cdd:PRK11629 90 GFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLA 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 684 DEPTSGMDSSSRRAIWDLLQQ---QKGDrTVLLTTHFMDEADLLgDRIAILAKGELQ 737
Cdd:PRK11629 170 DEPTGNLDARNADSIFQLLGElnrLQGT-AFLVVTHDLQLAKRM-SRQLEMRDGRLT 224
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
547-716 |
1.98e-16 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 79.46 E-value: 1.98e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 547 LSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVGWCPQHDILFDNFTVTDHLYFYg 626
Cdd:cd03231 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFW- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 627 qlkglsHQDC-HEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQ 705
Cdd:cd03231 98 ------HADHsDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH 171
|
170
....*....|..
gi 1958656855 706 -KGDRTVLLTTH 716
Cdd:cd03231 172 cARGGMVVLTTH 183
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
523-736 |
2.25e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 80.66 E-value: 2.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 523 NAIEIQHLyKVFYtGRSKCIavKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPS-----KGHAYIHGCEI-SKDM 596
Cdd:PRK14267 3 FAIETVNL-RVYY-GSNHVI--KGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNeearvEGEVRLFGRNIySPDV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 597 --VRIRKNVGWCPQHDILFDNFTVTDHLYFYGQLKGL--SHQDCHEKIEEMLHTLGL----EDKRNSRSKFLSGGIKRKL 668
Cdd:PRK14267 79 dpIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLvkSKKELDERVEWALKKAALwdevKDRLNDYPSNLSGGQRQRL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 669 AIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
543-736 |
4.24e-16 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 83.53 E-value: 4.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS----KDMVR--I------RKNVGWCPQHD 610
Cdd:COG1129 267 VVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRirspRDAIRagIayvpedRKGEGLVLDLS 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 611 ILfDNFTVTdHLYFYGQLKGLSHQDCHEKIEEMLHTLGLedKRNSRS---KFLSGGIKRKLAIGIALIAGSKVLILDEPT 687
Cdd:COG1129 347 IR-ENITLA-SLDRLSRGGLLDRRRERALAEEYIKRLRI--KTPSPEqpvGNLSGGNQQKVVLAKWLATDPKVLILDEPT 422
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 688 SGMDSSSRRAIWDLLQQ--QKGdRTVLLTTHFMDEadLLG--DRIAILAKGEL 736
Cdd:COG1129 423 RGIDVGAKAEIYRLIRElaAEG-KAVIVISSELPE--LLGlsDRILVMREGRI 472
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
518-736 |
5.00e-16 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 83.74 E-value: 5.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 518 PAGHINAIEIQHLYKVFYTGRskcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPpSKGHAYIHGCEISK-DM 596
Cdd:PRK11174 343 ASNDPVTIEAEDLEILSPDGK---TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLP-YQGSLKINGIELRElDP 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 597 VRIRKNVGWCPQHDILF-----DNFTVTDHLYFYGQLKGLSHQ-DCHEKIEEMlhTLGLEDKRNSRSKFLSGGIKRKLAI 670
Cdd:PRK11174 419 ESWRKHLSWVGQNPQLPhgtlrDNVLLGNPDASDEQLQQALENaWVSEFLPLL--PQGLDTPIGDQAAGLSVGQAQRLAL 496
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 671 GIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMDeaDLLG-DRIAILAKGEL 736
Cdd:PRK11174 497 ARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE--DLAQwDQIWVMQDGQI 561
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
544-742 |
5.86e-16 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 80.05 E-value: 5.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS---KDMVRIRKNVGWC---PQHDILFDNft 617
Cdd:PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDyskRGLLALRQQVATVfqdPEQQIFYTD-- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 618 VTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRA 697
Cdd:PRK13638 95 IDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1958656855 698 IWDLLQQ--QKGDRtVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:PRK13638 175 MIAIIRRivAQGNH-VIISSHDIDLIYEISDAVYVLRQGQILTHGAP 220
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
523-736 |
6.86e-16 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 79.01 E-value: 6.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 523 NAIEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK----DMVR 598
Cdd:COG4181 7 PIIELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFAldedARAR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 599 IR-KNVGWcpqhdiLFDNFtvtdHLyfygqLKGLS-------------HQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGI 664
Cdd:COG4181 87 LRaRHVGF------VFQSF----QL-----LPTLTalenvmlplelagRRDARARARALLERVGLGHRLDHYPAQLSGGE 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 665 KRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLL---QQQKGdRTVLLTTHfmDEADLL-GDRIAILAKGEL 736
Cdd:COG4181 152 QQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLfelNRERG-TTLVLVTH--DPALAArCDRVLRLRAGRL 224
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
525-742 |
7.02e-16 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 82.93 E-value: 7.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYT-GRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMV------ 597
Cdd:TIGR03269 280 IKVRNVSKRYISvDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTkpgpdg 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 598 --RIRKNVGWCPQHDILFDNFTVTDHLYFYGQLKgLSHQDCHEKIEEMLHTLGLEDK--RNSRSKF---LSGGIKRKLAI 670
Cdd:TIGR03269 360 rgRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE-LPDELARMKAVITLKMVGFDEEkaEEILDKYpdeLSEGERHRVAL 438
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 671 GIALIAGSKVLILDEPTSGMDSSSRRAIWD--LLQQQKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:TIGR03269 439 AQVLIKEPRIVILDEPTGTMDPITKVDVTHsiLKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
545-745 |
7.67e-16 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 78.98 E-value: 7.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 545 KDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI---SKDMVRIRKNVGWCPQHDILFDNFTVTDH 621
Cdd:PRK09493 18 HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVndpKVDERLIRQEAGMVFQQFYLFPHLTALEN 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 622 LYFyG--QLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIW 699
Cdd:PRK09493 98 VMF-GplRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVL 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958656855 700 DLLQQ--QKGdRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFL 745
Cdd:PRK09493 177 KVMQDlaEEG-MTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
534-716 |
8.79e-16 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 82.76 E-value: 8.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 534 FYTGRSKcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNVGWCPQHDIL 612
Cdd:PRK11176 350 TYPGKEV-PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDyTLASLRNQVALVSQNVHL 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 613 FdNFTVTDHLYfYGQLKGLSHQDChEKIEEMLHTLGLEDK----------RNSRSkfLSGGIKRKLAIGIALIAGSKVLI 682
Cdd:PRK11176 429 F-NDTIANNIA-YARTEQYSREQI-EEAARMAYAMDFINKmdngldtvigENGVL--LSGGQRQRIAIARALLRDSPILI 503
|
170 180 190
....*....|....*....|....*....|....
gi 1958656855 683 LDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTH 716
Cdd:PRK11176 504 LDEATSALDTESERAIQAALDELQKNRTSLVIAH 537
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
524-691 |
1.15e-15 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 78.52 E-value: 1.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYKvFYtGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI-------SKDM 596
Cdd:PRK11124 2 SIQLNGINC-FY-GAHQ--ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFdfsktpsDKAI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 597 VRIRKNVGWCPQHDILFDNFTVTDHLYFYG-QLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALI 675
Cdd:PRK11124 78 RELRRNVGMVFQQYNLWPHLTVQQNLIEAPcRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM 157
|
170
....*....|....*.
gi 1958656855 676 AGSKVLILDEPTSGMD 691
Cdd:PRK11124 158 MEPQVLLFDEPTAALD 173
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
1343-1527 |
1.37e-15 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 76.90 E-value: 1.37e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1343 KVYKEKVPLLavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLT--REQPITSGDAFVKGFNIRTDMAKVqqwIGYCPEFD 1420
Cdd:cd03232 14 PVKGGKRQLL--NNISGYVKPGTLTALMGESGAGKTTLLDVLAgrKTAGVITGEILINGRPLDKNFQRS---TGYVEQQD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1421 ALLNFMTGREMLVMHARIRGIpechiktcvdmilenllmcvyadklvktySDGNKRVLSTAIALLGEPTVILLDEPSTGM 1500
Cdd:cd03232 89 VHSPNLTVREALRFSALLRGL-----------------------------SVEQRKRLTIGVELAAKPSILFLDEPTSGL 139
|
170 180
....*....|....*....|....*..
gi 1958656855 1501 DPVARRLVWDAVGRVRESGKTIVITSH 1527
Cdd:cd03232 140 DSQAAYNIVRFLKKLADSGQAILCTIH 166
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
533-729 |
1.58e-15 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 78.67 E-value: 1.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 533 VFYtgrSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTV--C-SVLTGLIPPSK--GHAYIHGCEISK---DMVRIRKNVG 604
Cdd:PRK14243 18 VYY---GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTIlrCfNRLNDLIPGFRveGKVTFHGKNLYApdvDPVEVRRRIG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDILFDNfTVTDHLYFYGQLKGLShQDCHEKIEEMLHTLGL----EDKRNSRSKFLSGGIKRKLAIGIALIAGSKV 680
Cdd:PRK14243 95 MVFQKPNPFPK-SIYDNIAYGARINGYK-GDMDELVERSLRQAALwdevKDKLKQSGLSLSGGQQQRLCIARAIAVQPEV 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958656855 681 LILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMDEADLLGDRIA 729
Cdd:PRK14243 173 ILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTA 221
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
525-734 |
1.83e-15 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 77.47 E-value: 1.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFY---TGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIH----GCEISK--- 594
Cdd:COG4778 5 LEVENLSKTFTlhlQGGKRLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRhdggWVDLAQasp 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 595 -DMVRIRKN-VGWCPQH----------DIlfdnftVTDHLYfygqLKGLSHQDCHEKIEEMLHTLGLEDK--RNSRSKFl 660
Cdd:COG4778 85 rEILALRRRtIGYVSQFlrviprvsalDV------VAEPLL----ERGVDREEARARARELLARLNLPERlwDLPPATF- 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 661 SGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTThFMDEA--DLLGDRIAILAKG 734
Cdd:COG4778 154 SGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAIIGI-FHDEEvrEAVADRVVDVTPF 228
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1353-1547 |
2.08e-15 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 75.93 E-value: 2.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1353 AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKG--FNIRTDMAKVQQWIGYCPEfDALlnfmtgRE 1430
Cdd:cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGkpVTRRSPRDAIRAGIAYVPE-DRK------RE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1431 MLVMharirgipechiktcvDM-ILENLLMCVYadklvktYSDGN--KRVLstAIALLGEPTVILLDEPSTGMDPVARRL 1507
Cdd:cd03215 88 GLVL----------------DLsVAENIALSSL-------LSGGNqqKVVL--ARWLARDPRVLILDEPTRGVDVGAKAE 142
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958656855 1508 VWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQF 1547
Cdd:cd03215 143 IYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
547-747 |
2.27e-15 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 78.29 E-value: 2.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 547 LSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI----SKDMVRirkNVGWCPQHDILFDNFTVTDHL 622
Cdd:PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLeswsSKAFAR---KVAYLPQQLPAAEGMTVRELV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 623 Y-----FYGQLKGLSHQDcHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRA 697
Cdd:PRK10575 107 AigrypWHGALGRFGAAD-REKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVD 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 698 IWDLLQ---QQKGdRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFLKQ 747
Cdd:PRK10575 186 VLALVHrlsQERG-LTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
544-740 |
2.64e-15 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 77.82 E-value: 2.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPP----SKGHAYIHGCEISKDMVRIRK--------NVGWCPQHdi 611
Cdd:PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgvrqTAGRVLLDGKPVAPCALRGRKiatimqnpRSAFNPLH-- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 612 lfdnfTVTDHLYFYGQLKGLSHQDchEKIEEMLHTLGLEDKRNSRSKF---LSGGIKRKLAIGIALIAGSKVLILDEPTS 688
Cdd:PRK10418 97 -----TMHTHARETCLALGKPADD--ATLTAALEAVGLENAARVLKLYpfeMSGGMLQRMMIALALLCEAPFIIADEPTT 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 689 GMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLGDRIAILAKGELQCCG 740
Cdd:PRK10418 170 DLDVVAQARILDLLESivQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
522-734 |
2.84e-15 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 77.48 E-value: 2.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 522 INAIEIQHLYKVFYTGRskciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI--------S 593
Cdd:PRK11264 1 MSAIEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIdtarslsqQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 594 KDMVR-IRKNVGWCPQHDILFDNFTVTDHLyFYG--QLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAI 670
Cdd:PRK11264 77 KGLIRqLRQHVGFVFQNFNLFPHRTVLENI-IEGpvIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAI 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 671 GIALIAGSKVLILDEPTSGMDS-------SSRRAiwdlLQQQKgdRTVLLTTHFMDEADLLGDRIAILAKG 734
Cdd:PRK11264 156 ARALAMRPEVILFDEPTSALDPelvgevlNTIRQ----LAQEK--RTMVIVTHEMSFARDVADRAIFMDQG 220
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
545-736 |
3.02e-15 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 80.87 E-value: 3.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 545 KDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVG--WCP---QHDILFDNFTVT 619
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGlvYLPedrQSSGLYLDAPLA 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 620 DHL--YFYGQLkGLSHQDCHEK--IEEMLHTLG--LEDKRNSrSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSS 693
Cdd:PRK15439 360 WNVcaLTHNRR-GFWIKPARENavLERYRRALNikFNHAEQA-ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1958656855 694 SRRAIWDLLQQQKGDRT-VLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:PRK15439 438 ARNDIYQLIRSIAAQNVaVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
542-742 |
3.53e-15 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 77.34 E-value: 3.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 542 IAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS---------KDMVRIRKNVGwcpqhdiL 612
Cdd:PRK11300 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEglpghqiarMGVVRTFQHVR-------L 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 613 FDNFTVTDHL-----------YFYGQLKG----LSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAG 677
Cdd:PRK11300 92 FREMTVIENLlvaqhqqlktgLFSGLLKTpafrRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQ 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 678 SKVLILDEPTSGMDSSSRRAIWDLLQQQKGDR--TVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:PRK11300 172 PEILMLDEPAAGLNPKETKELDELIAELRNEHnvTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTP 238
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
525-736 |
4.58e-15 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 77.36 E-value: 4.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRskciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSK---------GHAYIHGCEISKD 595
Cdd:PRK09984 5 IRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKsagshiellGRTVQREGRLARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 596 MVRIRKNVGWCPQHDILFDNFTVTDHL---------YFYGQLKGLSHQDCHEKIEEmLHTLGLEDKRNSRSKFLSGGIKR 666
Cdd:PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVligalgstpFWRTCFSWFTREQKQRALQA-LTRVGMVHFAHQRVSTLSGGQQQ 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 667 KLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRdiNQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
545-742 |
6.56e-15 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 78.53 E-value: 6.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 545 KDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIhGCEISKDMVRIRKNVGWCPQHDILFDNFTVTDHLYF 624
Cdd:PRK11000 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 625 YGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSR---RAIWDL 701
Cdd:PRK11000 99 GLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRvqmRIEISR 178
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958656855 702 LQQQKGdRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:PRK11000 179 LHKRLG-RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKP 218
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
524-754 |
8.03e-15 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 79.87 E-value: 8.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYkvF-YTGRSKCiAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRK 601
Cdd:PRK11160 338 SLTLNNVS--FtYPDQPQP-VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADySEAALRQ 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 602 NVGWCPQHDILFdNFTVTDHLyfygQLKGLSHQDchEKIEEMLHTLGLEDKRNSRSKF----------LSGGIKRKLAIG 671
Cdd:PRK11160 415 AISVVSQRVHLF-SATLRDNL----LLAAPNASD--EALIEVLQQVGLEKLLEDDKGLnawlgeggrqLSGGEQRRLGIA 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 672 IALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHfmdeaDLLG----DRIAILAKGELQCCGTPSFLKQ 747
Cdd:PRK11160 488 RALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITH-----RLTGleqfDRICVMDNGQIIEQGTHQELLA 562
|
....*..
gi 1958656855 748 KYGaGYY 754
Cdd:PRK11160 563 QQG-RYY 568
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1346-1554 |
1.23e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 76.28 E-value: 1.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1346 KEKVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSI---FNMLTREqpiTSGDAFVKGF---------NIRTDMAKV---- 1409
Cdd:PRK13633 18 EESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIakhMNALLIP---SEGKVYVDGLdtsdeenlwDIRNKAGMVfqnp 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1410 -QQWIGYCPEFDALLnfmtGREMLvmharirGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEP 1488
Cdd:PRK13633 95 dNQIVATIVEEDVAF----GPENL-------GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 1489 TVILLDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEECeALCTRLAIMVQGQFKCLGSPQ 1554
Cdd:PRK13633 164 ECIIFDEPTAMLDPSGRREVVNTIKELnKKYGITIILITHYMEEA-VEADRIIVMDSGKVVMEGTPK 229
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
1350-1546 |
1.43e-14 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 74.55 E-value: 1.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1350 PLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRT-DMAKVQQWIGYCPEfDALLNFMTG 1428
Cdd:cd03245 16 EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQlDPADLRRNIGYVPQ-DVTLFYGTL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1429 REMLVMharirGIPEchiktcVD--MILENL-LMCV--YADKLVKTY-----------SDGNKRVLSTAIALLGEPTVIL 1492
Cdd:cd03245 95 RDNITL-----GAPL------ADdeRILRAAeLAGVtdFVNKHPNGLdlqigergrglSGGQRQAVALARALLNDPPILL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 1493 LDEPSTGMDPVARRLVWDAVGRVReSGKTIVITSH--SMEEceaLCTRLAIMVQGQ 1546
Cdd:cd03245 164 LDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHrpSLLD---LVDRIIVMDSGR 215
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
525-734 |
1.90e-14 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 78.17 E-value: 1.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytgrSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVG 604
Cdd:PRK15439 12 LCARSISKQY----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 --WCPQHDILFDNFTVTDHLYFygqlkGLS-HQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVL 681
Cdd:PRK15439 88 iyLVPQEPLLFPNLSVKENILF-----GLPkRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRIL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 682 ILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLtTHFMDEADLLGDRIAILAKG 734
Cdd:PRK15439 163 ILDEPTASLTPAETERLFSRIRelLAQGVGIVFI-SHKLPEIRQLADRISVMRDG 216
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
525-716 |
2.96e-14 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 78.23 E-value: 2.96e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK----DMVRIR 600
Cdd:PRK10535 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATldadALAQLR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 K-NVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSK 679
Cdd:PRK10535 85 ReHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQ 164
|
170 180 190
....*....|....*....|....*....|....*....
gi 1958656855 680 VLILDEPTSGMDSSSRRAIWDLLQQ--QKGdRTVLLTTH 716
Cdd:PRK10535 165 VILADEPTGALDSHSGEEVMAILHQlrDRG-HTVIIVTH 202
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
523-716 |
4.16e-14 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 73.66 E-value: 4.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 523 NAIEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK----DMVR 598
Cdd:PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQmdeeARAK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 599 IR-KNVGWCPQHDILFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAG 677
Cdd:PRK10584 85 LRaKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGR 164
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958656855 678 SKVLILDEPTSGMDSSSRRAIWDLLQQQKGDR--TVLLTTH 716
Cdd:PRK10584 165 PDVLFADEPTGNLDRQTGDKIADLLFSLNREHgtTLILVTH 205
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
1338-1548 |
4.43e-14 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 73.06 E-value: 4.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1338 VKELSKVYKEKVPLLavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI-RTDMAKVqqwIGYC 1416
Cdd:cd03226 2 IENISFSYKKGTEIL--DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIkAKERRKS---IGYV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1417 P-EFDALLNFMTGREMLvmharIRGIPECHIK-TCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLD 1494
Cdd:cd03226 77 MqDVDYQLFTDSVREEL-----LLGLKELDAGnEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFD 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 1495 EPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFK 1548
Cdd:cd03226 152 EPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1336-1560 |
6.44e-14 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 75.13 E-value: 6.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNM---LtrEQPiTSGDAFVKGfnirTDMAKVQQW 1412
Cdd:COG3842 6 LELENVSKRYGDVT---ALDDVSLSIEPGEFVALLGPSGCGKTTLLRMiagF--ETP-DSGRILLDG----RDVTGLPPE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1413 ---IGYCPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILEnllMcV----YADKLVKTYSDGNK-RVlstAIA- 1483
Cdd:COG3842 76 krnVGMVFQDYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLE---L-VglegLADRYPHQLSGGQQqRV---ALAr 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1484 -LLGEPTVILLDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL----K 1557
Cdd:COG3842 149 aLAPEPRVLLLDEPLSALDAKLREEMREELRRLqRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEIyerpA 228
|
...
gi 1958656855 1558 SRF 1560
Cdd:COG3842 229 TRF 231
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
544-736 |
6.55e-14 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 76.58 E-value: 6.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCE----------------ISKDmvriRKnvgwcp 607
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEvvtrspqdglangivyISED----RK------ 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 608 qHDILF------DNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLedKRNSRSK---FLSGGIKRKLAIGIALIAGS 678
Cdd:PRK10762 338 -RDGLVlgmsvkENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNI--KTPSMEQaigLLSGGNQQKVAIARGLMTRP 414
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 679 KVLILDEPTSGMDSSSRRAIWDLLQQQKGD-RTVLLTTHFMDEadLLG--DRIAILAKGEL 736
Cdd:PRK10762 415 KVLILDEPTRGVDVGAKKEIYQLINQFKAEgLSIILVSSEMPE--VLGmsDRILVMHEGRI 473
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
1328-1560 |
7.41e-14 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 76.62 E-value: 7.41e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1328 DTLIKKSPLVVKELSKVYKEKVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQP---ITSGDAFVKGfnIRT 1404
Cdd:TIGR00955 15 AQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPkgvKGSGSVLLNG--MPI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1405 DMAKVQQWIGYCPEFDALLNFMTGREMLVMHARIRgIPECHIKT----CVDMILE--NLLMC----VYADKLVKTYSDGN 1474
Cdd:TIGR00955 93 DAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLR-MPRRVTKKekreRVDEVLQalGLRKCantrIGVPGRVKGLSGGE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1475 KRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSH--SMEECEaLCTRLAIMVQGQFKCLGS 1552
Cdd:TIGR00955 172 RKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHqpSSELFE-LFDKIILMAEGRVAYLGS 250
|
....*...
gi 1958656855 1553 PQHLKSRF 1560
Cdd:TIGR00955 251 PDQAVPFF 258
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
525-720 |
7.67e-14 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 70.56 E-value: 7.67e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKvFYTGRskcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGH-AYIHGCEISkdmvrirknv 603
Cdd:cd03221 1 IELENLSK-TYGGK---LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIvTWGSTVKIG---------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 gwcpqhdilfdnftvtdhlYFygqlkglsHQdchekieemlhtlgledkrnsrskfLSGGIKRKLAIGIALIAGSKVLIL 683
Cdd:cd03221 67 -------------------YF--------EQ-------------------------LSGGEKMRLALAKLLLENPNLLLL 94
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958656855 684 DEPTSGMDSSSRRAIWDLLQQQKGdrTVLLTTH---FMDE 720
Cdd:cd03221 95 DEPTNHLDLESIEALEEALKEYPG--TVILVSHdryFLDQ 132
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
554-734 |
8.99e-14 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 77.07 E-value: 8.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 554 GQITVLLGHNGAGKTTVCSVL-----TGLIppSKGHAYIHGCEISKDMVRIrknVGWCPQHDILFDNFTVTDHLYFYGQL 628
Cdd:TIGR00956 789 GTLTALMGASGAGKTTLLNVLaervtTGVI--TGGDRLVNGRPLDSSFQRS---IGYVQQQDLHLPTSTVRESLRFSAYL 863
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 629 KGLSHQDCHEK---IEEMLHTLGLEDKRNSRSKFLSGGI----KRKLAIGIALIAGSKVLI-LDEPTSGMDSSSRRAIWD 700
Cdd:TIGR00956 864 RQPKSVSKSEKmeyVEEVIKLLEMESYADAVVGVPGEGLnveqRKRLTIGVELVAKPKLLLfLDEPTSGLDSQTAWSICK 943
|
170 180 190
....*....|....*....|....*....|....*..
gi 1958656855 701 LLQQ-QKGDRTVLLTTHfMDEADLLG--DRIAILAKG 734
Cdd:TIGR00956 944 LMRKlADHGQAILCTIH-QPSAILFEefDRLLLLQKG 979
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
544-745 |
9.20e-14 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 73.08 E-value: 9.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISkdMVR----------------IRKNVGWCP 607
Cdd:PRK10619 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTIN--LVRdkdgqlkvadknqlrlLRTRLTMVF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 608 QHDILFDNFTVTDHLYFYG-QLKGLSHQDCHEKIEEMLHTLGLEDKrnSRSKF---LSGGIKRKLAIGIALIAGSKVLIL 683
Cdd:PRK10619 99 QHFNLWSHMTVLENVMEAPiQVLGLSKQEARERAVKYLAKVGIDER--AQGKYpvhLSGGQQQRVSIARALAMEPEVLLF 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 684 DEPTSGMDSSSRRAIWDLLQQ--QKGdRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTPSFL 745
Cdd:PRK10619 177 DEPTSALDPELVGEVLRIMQQlaEEG-KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
1353-1545 |
9.33e-14 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 73.38 E-value: 9.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1353 AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGfnIRTDMAKVQQWIGYCPEFDAL-LNFMTGREM 1431
Cdd:PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILG--QPTRQALQKNLVAYVPQSEEVdWSFPVLVED 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1432 LVMHAR------IRgIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKR--VLSTAIALLGEptVILLDEPSTGMDPV 1503
Cdd:PRK15056 100 VVMMGRyghmgwLR-RAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKrvFLARAIAQQGQ--VILLDEPFTGVDVK 176
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1958656855 1504 ARRLVWDAVGRVRESGKTIVITSHSMEECEALCTrLAIMVQG 1545
Cdd:PRK15056 177 TEARIISLLRELRDEGKTMLVSTHNLGSVTEFCD-YTVMVKG 217
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
1352-1556 |
1.08e-13 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 75.07 E-value: 1.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1352 LAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI------------RTDMAKVQQWIGYCPEF 1419
Cdd:PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIakisdaelrevrRKKIAMVFQSFALMPHM 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1420 DALLNFMTGREMLVMHARIRgiPECHIKTCVDMILENllmcvYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTG 1499
Cdd:PRK10070 122 TVLDNTAFGMELAGINAEER--REKALDALRQVGLEN-----YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 1500 MDPVARRLVWDAVGRVR-ESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:PRK10070 195 LDPLIRTEMQDELVKLQaKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
1353-1583 |
1.55e-13 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 75.70 E-value: 1.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1353 AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKvqqwigycpefdALLNFMTGREML 1432
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISS------------GLNGQLTGIENI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1433 VMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAV 1512
Cdd:PRK13545 107 ELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKM 186
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 1513 GRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSRFGS---GYSLQAKV-RRKWQQQMLEEFK 1583
Cdd:PRK13545 187 NEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEflkKYNQMSVEeRKDFREEQISQFQ 261
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
525-736 |
2.13e-13 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 72.15 E-value: 2.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTG-----RSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK----D 595
Cdd:TIGR02769 3 LEVRDVTHTYRTGglfgaKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQldrkQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 596 MVRIRKNVGWCPQHDILFDN------FTVTDHLYFYGQLKGLSHQdchEKIEEMLHTLGLEDK-RNSRSKFLSGGIKRKL 668
Cdd:TIGR02769 83 RRAFRRDVQLVFQDSPSAVNprmtvrQIIGEPLRHLTSLDESEQK---ARIAELLDMVGLRSEdADKLPRQLSGGQLQRI 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 669 AIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:TIGR02769 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRklQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
1338-1546 |
2.31e-13 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 71.44 E-value: 2.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1338 VKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTS---IFNMLTREQPI--TSGDAFVKGFNI---------- 1402
Cdd:cd03260 3 LRDLNVYYGDKH---ALKDISLDIPKGEITALIGPSGCGKSTllrLLNRLNDLIPGapDEGEVLLDGKDIydldvdvlel 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1403 RTDMAKVQQwigYCPEFDallnfMTGREMLVMHARIRGIPEchiKTCVDMILENLLMCVY-----ADKLVKTY-SDGNKR 1476
Cdd:cd03260 80 RRRVGMVFQ---KPNPFP-----GSIYDNVAYGLRLHGIKL---KEELDERVEEALRKAAlwdevKDRLHALGlSGGQQQ 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1477 VLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESgKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGR 217
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
1336-1546 |
2.46e-13 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 69.94 E-value: 2.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVPLLaVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGdafvkgfNIRTDMAKVQQW--- 1412
Cdd:cd03246 1 LEVENVSFRYPGAEPPV-LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG-------RVRLDGADISQWdpn 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1413 -----IGYCPEFDALLNfmtgremlvmharirgipechiktcvDMILENLLmcvyadklvktySDGNKRVLSTAIALLGE 1487
Cdd:cd03246 73 elgdhVGYLPQDDELFS--------------------------GSIAENIL------------SGGQRQRLGLARALYGN 114
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 1488 PTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEAlCTRLAIMVQGQ 1546
Cdd:cd03246 115 PRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS-ADRILVLEDGR 172
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
543-735 |
2.48e-13 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 74.72 E-value: 2.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPpSKGHAYIHGCEIS----KDMVRIRKNVgwcpQhdILF-DNF- 616
Cdd:COG4172 301 AVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIP-SEGEIRFDGQDLDglsrRALRPLRRRM----Q--VVFqDPFg 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 617 ------TVtdhlyfyGQL---------KGLSHQDCHEKIEEMLHTLGLEdkRNSRSKF---LSGGIKRKLAIGIALIAGS 678
Cdd:COG4172 374 slsprmTV-------GQIiaeglrvhgPGLSAAERRARVAEALEEVGLD--PAARHRYpheFSGGQRQRIAIARALILEP 444
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 679 KVLILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHfmdeaDL-----LGDRIAILAKGE 735
Cdd:COG4172 445 KLLVLDEPTSALDVSVQAQILDLLRdlQREHGLAYLFISH-----DLavvraLAHRVMVMKDGK 503
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
545-736 |
2.54e-13 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 72.02 E-value: 2.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 545 KDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHaYIHGceiSKDMVRIRKNVGWCPQHDILFDNFTVTDHLYF 624
Cdd:PRK11247 29 NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE-LLAG---TAPLAEAREDTRLMFQDARLLPWKKVIDNVGL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 625 ygQLKGlshqDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDL--- 701
Cdd:PRK11247 105 --GLKG----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLies 178
|
170 180 190
....*....|....*....|....*....|....*
gi 1958656855 702 LQQQKGdRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:PRK11247 179 LWQQHG-FTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1338-1559 |
2.58e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 72.46 E-value: 2.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1338 VKELSKVYKEKVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKG--------FNIRTDMAKV 1409
Cdd:PRK13650 7 VKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGdllteenvWDIRHKIGMV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1410 -----QQWIGYCPEFDALLnfmtGREMlvmhariRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIAL 1484
Cdd:PRK13650 87 fqnpdNQFVGATVEDDVAF----GLEN-------KGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAV 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 1485 LGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVIT-SHSMEECeALCTRLAIMVQGQFKCLGSPQHLKSR 1559
Cdd:PRK13650 156 AMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISiTHDLDEV-ALSDRVLVMKNGQVESTSTPRELFSR 230
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
544-716 |
3.06e-13 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 70.36 E-value: 3.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVGWCPQHDILFDNFTVTDHLY 623
Cdd:PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 624 FygqlkGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQ 703
Cdd:PRK13540 97 Y-----DIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQ 171
|
170
....*....|....
gi 1958656855 704 Q-QKGDRTVLLTTH 716
Cdd:PRK13540 172 EhRAKGGAVLLTSH 185
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
537-765 |
3.25e-13 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 71.94 E-value: 3.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 537 GRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI----SKDMVRirkNVGWCPQHDIL 612
Cdd:PRK10253 16 GYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIqhyaSKEVAR---RIGLLAQNATT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 613 FDNFTVTDHL----YFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTS 688
Cdd:PRK10253 93 PGDITVQELVargrYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTT 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 689 GMDSSSRRAIWDLLQQ---QKGdRTVLLTTHFMDEADLLGDRIAILAKGELQCCG------TPSFLKQKYgaGYYMTIIK 759
Cdd:PRK10253 173 WLDISHQIDLLELLSElnrEKG-YTLAAVLHDLNQACRYASHLIALREGKIVAQGapkeivTAELIERIY--GLRCMIID 249
|
....*.
gi 1958656855 760 TPLCDT 765
Cdd:PRK10253 250 DPVAGT 255
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1338-1496 |
3.47e-13 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 74.33 E-value: 3.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1338 VKELSKVYKEKvPLLavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGfNIRtdMAKVQQWIGYCP 1417
Cdd:COG0488 1 LENLSKSFGGR-PLL--DDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPK-GLR--IGYLPQEPPLDD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1418 EFDALLNFMTG-REMLVMHARIRGIPECHIKTCVDM------------------------ILENL-LMCVYADKLVKTYS 1471
Cdd:COG0488 75 DLTVLDTVLDGdAELRALEAELEELEAKLAEPDEDLerlaelqeefealggweaearaeeILSGLgFPEEDLDRPVSELS 154
|
170 180
....*....|....*....|....*
gi 1958656855 1472 DGNKRVLSTAIALLGEPTVILLDEP 1496
Cdd:COG0488 155 GGWRRRVALARALLSEPDLLLLDEP 179
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
543-734 |
4.09e-13 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 73.79 E-value: 4.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVR--IRKNVGWCPQHDILFDNFTVTD 620
Cdd:PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTaaLAAGVAIIYQELHLVPEMTVAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 621 HLYFyGQL--------KGLSHQDCHEKIEEmlhtLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMds 692
Cdd:PRK11288 99 NLYL-GQLphkggivnRRLLNYEAREQLEH----LGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSL-- 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958656855 693 SSR------RAIWDLLQQqkgDRTVLLTTHFMDEADLLGDRIAILAKG 734
Cdd:PRK11288 172 SAReieqlfRVIRELRAE---GRVILYVSHRMEEIFALCDAITVFKDG 216
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
525-758 |
5.63e-13 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 74.01 E-value: 5.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRSkciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNV 603
Cdd:TIGR01193 474 IVINDVSYSYGYGSN---ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDiDRHTLRQFI 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCPQHDILFDNfTVTDHLyFYGQLKGLSHQDCHE---------KIEEMlhTLGLEDKRNSRSKFLSGGIKRKLAIGIAL 674
Cdd:TIGR01193 551 NYLPQEPYIFSG-SILENL-LLGAKENVSQDEIWAaceiaeikdDIENM--PLGYQTELSEEGSSISGGQKQRIALARAL 626
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 675 IAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKgDRTVLLTTHFMDEADLLgDRIAILAKGELQCCGT-PSFLKQKygaGY 753
Cdd:TIGR01193 627 LTDSKVLILDESTSNLDTITEKKIVNNLLNLQ-DKTIIFVAHRLSVAKQS-DKIIVLDHGKIIEQGShDELLDRN---GF 701
|
....*
gi 1958656855 754 YMTII 758
Cdd:TIGR01193 702 YASLI 706
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
532-716 |
5.67e-13 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 71.07 E-value: 5.67e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 532 KVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMvriRKN-VGWCPQHD 610
Cdd:PRK15056 11 DVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQAL---QKNlVAYVPQSE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 611 -------ILFDNFTVTDHLYFYGQLKGLSHQDcHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLIL 683
Cdd:PRK15056 88 evdwsfpVLVEDVVMMGRYGHMGWLRRAKKRD-RQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILL 166
|
170 180 190
....*....|....*....|....*....|....
gi 1958656855 684 DEPTSGMDSSSRRAIWDLLQQQKGD-RTVLLTTH 716
Cdd:PRK15056 167 DEPFTGVDVKTEARIISLLRELRDEgKTMLVSTH 200
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
1340-1530 |
7.50e-13 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 69.36 E-value: 7.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1340 ELSKVYKEKVP-LLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI----RTDMAKVQQWIG 1414
Cdd:cd03292 2 EFINVTKTYPNgTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVsdlrGRAIPYLRRKIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1415 YCPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLD 1494
Cdd:cd03292 82 VVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIAD 161
|
170 180 190
....*....|....*....|....*....|....*.
gi 1958656855 1495 EPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSME 1530
Cdd:cd03292 162 EPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE 197
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1339-1594 |
8.33e-13 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 71.76 E-value: 8.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1339 KELSKVYKE-KVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIF---NMLtrEQPiTSGDAFVKGFNI----RTDMAKVQ 1410
Cdd:PRK11153 5 KNISKVFPQgGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIrciNLL--ERP-TSGRVLVDGQDLtalsEKELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1411 QWIGYCPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTV 1490
Cdd:PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1491 ILLDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGS-------PQH-LKSRFG 1561
Cdd:PRK11153 162 LLCDEATSALDPATTRSILELLKDInRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTvsevfshPKHpLTREFI 241
|
250 260 270
....*....|....*....|....*....|....*.
gi 1958656855 1562 S---GYSLQAKVRRKWQQQMLEEFKAFVDLTFPGSS 1594
Cdd:PRK11153 242 QstlHLDLPEDYLARLQAEPTTGSGPLLRLEFTGES 277
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
525-736 |
8.62e-13 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 70.59 E-value: 8.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFY--TG---RSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI-----SK 594
Cdd:PRK15112 5 LEVRNLSKTFRyrTGwfrRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLhfgdySY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 595 DMVRIRKnvgwcpqhdILFDNFTVTDHLYFYGQL--------KGLSHQDCHEKIEEMLHTLGL-EDKRNSRSKFLSGGIK 665
Cdd:PRK15112 85 RSQRIRM---------IFQDPSTSLNPRQRISQIldfplrlnTDLEPEQREKQIIETLRQVGLlPDHASYYPHMLAPGQK 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 666 RKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDL---LQQQKGDRTVLLTTHF--MDEadlLGDRIAILAKGEL 736
Cdd:PRK15112 156 QRLGLARALILRPKVIIADEALASLDMSMRSQLINLmleLQEKQGISYIYVTQHLgmMKH---ISDQVLVMHQGEV 228
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
544-736 |
9.05e-13 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 72.89 E-value: 9.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS--KDMVRIRKNVGWCPQH---DILFDNFTV 618
Cdd:PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISprSPLDAVKKGMAYITESrrdNGFFPNFSI 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 619 TDHLYFYGQLK--------GLSHQDCHEKIEEMLHTLgLEDKRNSRSKF---LSGGIKRKLAIGIALIAGSKVLILDEPT 687
Cdd:PRK09700 359 AQNMAISRSLKdggykgamGLFHEVDEQRTAENQREL-LALKCHSVNQNiteLSGGNQQKVLISKWLCCCPEVIIFDEPT 437
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958656855 688 SGMDSSSRRAIWDLLQQQKGD-RTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:PRK09700 438 RGIDVGAKAEIYKVMRQLADDgKVILMVSSELPEIITVCDRIAVFCEGRL 487
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
1213-1527 |
1.14e-12 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 73.60 E-value: 1.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1213 GMAFSNLYYNFEIKKFCNAKNLSD-IDCNDVLEGYVVQKNIYAWESLGIGKYLTALailgpVYITLLFLTEANAFCALKA 1291
Cdd:TIGR00956 626 GGGYDNLGVTNKVCTVVGAEPGQDyVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVF-----FFFVYILLTEFNKGAKQKG 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1292 RLSGFFCKQKLRMllnVTGAEDE----------------DVLEEAENIKYHLDTLIKKSPLVV--KELS---KVYKEKVP 1350
Cdd:TIGR00956 701 EILVFRRGSLKRA---KKAGETSasnkndieagevlgstDLTDESDDVNDEKDMEKESGEDIFhwRNLTyevKIKKEKRV 777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1351 LLavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQP---ITSGDAFVKGfniRTDMAKVQQWIGYCPEFDALLNFMT 1427
Cdd:TIGR00956 778 IL--NNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTtgvITGGDRLVNG---RPLDSSFQRSIGYVQQQDLHLPTST 852
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1428 GREMLVMHARIRGIPECHIK---TCVDMILENLLMCVYADKLVKTYSDG-----NKRvLSTAIALLGEPTVIL-LDEPST 1498
Cdd:TIGR00956 853 VRESLRFSAYLRQPKSVSKSekmEYVEEVIKLLEMESYADAVVGVPGEGlnveqRKR-LTIGVELVAKPKLLLfLDEPTS 931
|
330 340 350
....*....|....*....|....*....|..
gi 1958656855 1499 GMDPvarRLVWDAVGRVR---ESGKTIVITSH 1527
Cdd:TIGR00956 932 GLDS---QTAWSICKLMRklaDHGQAILCTIH 960
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1339-1559 |
1.31e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 70.22 E-value: 1.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1339 KELSKVYKEKVPllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI-RTDMAKVQQWIGYCP 1417
Cdd:PRK13652 7 RDLCYSYSGSKE--ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPItKENIREVRKFVGLVF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1418 EFDALLNFMTGREMLVMHARIR-GIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEP 1496
Cdd:PRK13652 85 QNPDDQIFSPTVEQDIAFGPINlGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEP 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 1497 STGMDPVARRLVWDAVGRVRES-GKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSR 1559
Cdd:PRK13652 165 TAGLDPQGVKELIDFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1353-1546 |
1.58e-12 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 69.14 E-value: 1.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1353 AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIrTD--MAKV-QQWIGYCPEFDALLNFMTGR 1429
Cdd:PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDI-TDwqTAKImREAVAIVPEGRRVFSRMTVE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1430 EMLVMHARI--RGIPECHIKTCVDmilenLLMCVYADKLVK--TYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVAR 1505
Cdd:PRK11614 99 ENLAMGGFFaeRDQFQERIKWVYE-----LFPRLHERRIQRagTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIII 173
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958656855 1506 RLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:PRK11614 174 QQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGH 214
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1336-1547 |
1.69e-12 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 71.97 E-value: 1.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYkekVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKG-----FNIRTDMAK-- 1408
Cdd:COG1129 5 LEMRGISKSF---GGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGepvrfRSPRDAQAAgi 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1409 --VQQWIGYCPEFDALLNFMTGREM----LV----MHARIRGIpechiktcvdmiLENLLMCVYADKLVKTYSDGNKRVL 1478
Cdd:COG1129 82 aiIHQELNLVPNLSVAENIFLGREPrrggLIdwraMRRRAREL------------LARLGLDIDPDTPVGDLSVAQQQLV 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 1479 STAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQF 1547
Cdd:COG1129 150 EIARALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQGVAIIYISHRLDEVFEIADRVTVLRDGRL 218
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
526-720 |
1.85e-12 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 68.59 E-value: 1.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 526 EIQHLYKVFYTGRSKCIaVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNVG 604
Cdd:PRK10247 6 PLLQLQNVGYLAGDAKI-LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTlKPEIYRQQVS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQHDILFDNfTVTDHLYFYGQLKGLSHQDchEKIEEMLHTLGL-EDKRNSRSKFLSGGIKRKlaigIALIAG----SK 679
Cdd:PRK10247 85 YCAQTPTLFGD-TVYDNLIFPWQIRNQQPDP--AIFLDDLERFALpDTILTKNIAELSGGEKQR----ISLIRNlqfmPK 157
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958656855 680 VLILDEPTSGMDSSSRRAIWDLLQQQKGDR--TVLLTTHFMDE 720
Cdd:PRK10247 158 VLLLDEITSALDESNKHNVNEIIHRYVREQniAVLWVTHDKDE 200
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
537-735 |
2.07e-12 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 68.06 E-value: 2.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 537 GRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPS---KGHAYIHGCEISKDMVRIRKNVGWCPQHDILF 613
Cdd:cd03233 16 GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHF 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 614 DNFTVTDHLYFYGQLKGlshqdchekieemlhtlgledkrNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSS 693
Cdd:cd03233 96 PTLTVRETLDFALRCKG-----------------------NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958656855 694 SrrAIwDLLQQQKGDRTVLLTTHFM------DEADLLGDRIAILAKGE 735
Cdd:cd03233 153 T--AL-EILKCIRTMADVLKTTTFVslyqasDEIYDLFDKVLVLYEGR 197
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
1352-1578 |
2.48e-12 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 71.79 E-value: 2.48e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1352 LAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRT-DMAKVQQWIGYCPEfDALLNFMTGRE 1430
Cdd:COG2274 489 PVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQiDPASLRRQIGVVLQ-DVFLFSGTIRE 567
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1431 MLVMHARirGIPECHIKTCVDM--ILEnllmcvYADKLVKTY-----------SDGNKRVLSTAIALLGEPTVILLDEPS 1497
Cdd:COG2274 568 NITLGDP--DATDEEIIEAARLagLHD------FIEALPMGYdtvvgeggsnlSGGQRQRLAIARALLRNPRILILDEAT 639
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1498 TGMDPVARRLVWDAVGRVREsGKTIVITSHSMeECEALCTRLAIMVQGQFKCLGSPQHLKSRFGSGYSLqakvrrkWQQQ 1577
Cdd:COG2274 640 SALDAETEAIILENLRRLLK-GRTVIIIAHRL-STIRLADRIIVLDKGRIVEDGTHEELLARKGLYAEL-------VQQQ 710
|
.
gi 1958656855 1578 M 1578
Cdd:COG2274 711 L 711
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
525-736 |
2.58e-12 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 71.64 E-value: 2.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKT-TVCSVLtGLIPPS----KGHAYIHGCEIS----KD 595
Cdd:COG4172 7 LSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSvTALSIL-RLLPDPaahpSGSILFDGQDLLglseRE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 596 MVRIRKNvgwcpqhDI----------LfdN--FTVTDhlyfygQL-------KGLSHQDCHEKIEEMLHTLGLEDKRNSR 656
Cdd:COG4172 86 LRRIRGN-------RIamifqepmtsL--NplHTIGK------QIaevlrlhRGLSGAAARARALELLERVGIPDPERRL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 657 SKF---LSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHfmdeaDL-----LGD 726
Cdd:COG4172 151 DAYphqLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKdlQRELGMALLLITH-----DLgvvrrFAD 225
|
250
....*....|
gi 1958656855 727 RIAILAKGEL 736
Cdd:COG4172 226 RVAVMRQGEI 235
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1353-1558 |
3.03e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 68.95 E-value: 3.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1353 AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTD---MAKVQQWIGYC---PefDALLNFM 1426
Cdd:PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDkksLLEVRKTVGIVfqnP--DDQLFAP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1427 TGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARR 1506
Cdd:PRK13639 95 TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 1507 LVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKS 1558
Cdd:PRK13639 175 QIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1353-1546 |
4.33e-12 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 70.82 E-value: 4.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1353 AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKG--FNIRTDMAKVQQWIGYCPE---FDALLNFMT 1427
Cdd:COG1129 267 VVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGkpVRIRSPRDAIRAGIAYVPEdrkGEGLVLDLS 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1428 GRE---MLVMHARIRG--IPECHIKTCVDMILENL-LMCVYADKLVKTYSDGN--KRVLstAIALLGEPTVILLDEPSTG 1499
Cdd:COG1129 347 IREnitLASLDRLSRGglLDRRRERALAEEYIKRLrIKTPSPEQPVGNLSGGNqqKVVL--AKWLATDPKVLILDEPTRG 424
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1958656855 1500 MDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:COG1129 425 IDVGAKAEIYRLIRELAAEGKAVIVISSELPELLGLSDRILVMREGR 471
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
913-1149 |
5.57e-12 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 69.34 E-value: 5.57e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 913 VLSVQILLPLVIIMLSLSFFNFKLRKLDNVPLELTLQTygqtivpffiaensrlDPQLSDNFVKMLVAAGQVPLRIQGSV 992
Cdd:pfam12698 3 FLIITLLLPILLILLLGLIFSNAVNDPEELPVAVVDED----------------NSSLSRQLVRALEASPTVNLVQYVDS 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 993 ENFLLKKAKEapEDFDKLYVVAASFED---VNDHTTVKALFNNQAYHSPSLALALVDNVLFKLLSGANASITTTNYPQPQ 1069
Cdd:pfam12698 67 EEEAKEALKN--GKIDGLLVIPKGFSKdllKGESATVTVYINSSNLLVSKLILNALQSLLQQLNASALVLLLEALSTSAP 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1070 TAMELSETILYQGPKGHYLVVNFLFGIAFLSSSFSILTVG-EKSIKSKNLQFLSGVSMAAFWLSALLWDLISFLVPTLLL 1148
Cdd:pfam12698 145 IPVESTPLFNPQSGYAYYLVGLILMIIILIGAAIIAVSIVeEKESRIKERLLVSGVSPLQYWLGKILGDFLVGLLQLLII 224
|
.
gi 1958656855 1149 V 1149
Cdd:pfam12698 225 L 225
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
544-753 |
7.94e-12 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 66.01 E-value: 7.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGlIP---PSKGHAYIHGCEIsKDM---VRIRKNVGWCPQHDILFDNFT 617
Cdd:cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPkyeVTEGEILFKGEDI-TDLppeERARLGIFLAFQYPPEIPGVK 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 618 VTDHLyfygqlkglshqdchekieemlhtlgledkRNSRSKFlSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRA 697
Cdd:cd03217 94 NADFL------------------------------RYVNEGF-SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRL 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 698 IWDLLQQ-QKGDRTVLLTTHFMDEADLL-GDRIAILAKGELQCCGTPSFLKQKYGAGY 753
Cdd:cd03217 143 VAEVINKlREEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGDKELALEIEKKGY 200
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
545-735 |
7.98e-12 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 66.34 E-value: 7.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 545 KDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGceiskdmvrirkNVGWCPQHDILFdNFTVTDHLYF 624
Cdd:cd03250 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SIAYVSQEPWIQ-NGTIRENILF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 625 ygqlkGLSHQdcHEKIEEMLHTLGLE-DKRN----------SRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSS 693
Cdd:cd03250 89 -----GKPFD--EERYEKVIKACALEpDLEIlpdgdlteigEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAH 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1958656855 694 SRRAIWD--LLQQQKGDRTVLLTTH---FMDEAdllgDRIAILAKGE 735
Cdd:cd03250 162 VGRHIFEncILGLLLNNKTRILVTHqlqLLPHA----DQIVVLDNGR 204
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
524-755 |
8.86e-12 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 70.13 E-value: 8.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYKVFYTGRskcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRI-RKN 602
Cdd:PRK10790 340 RIDIDNVSFAYRDDN---LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVlRQG 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 603 VGWCPQH-----DILFDNFTVTDHL---YFYGQLKGLSHQDCHEKIEEMLHTLgLEDKRNSrskfLSGGIKRKLAIGIAL 674
Cdd:PRK10790 417 VAMVQQDpvvlaDTFLANVTLGRDIseeQVWQALETVQLAELARSLPDGLYTP-LGEQGNN----LSVGQKQLLALARVL 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 675 IAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMD---EAdllgDRIAILAKGELQCCGTPSFLKQKYGA 751
Cdd:PRK10790 492 VQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLStivEA----DTILVLHRGQAVEQGTHQQLLAAQGR 567
|
....
gi 1958656855 752 GYYM 755
Cdd:PRK10790 568 YWQM 571
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1338-1564 |
9.71e-12 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 67.35 E-value: 9.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1338 VKELSKVYKEKvplLAVNKVSFVVKEKECFGLLGLNGAGKTSIF----NMLTREQPITS-----GDAFVKGFNIRTDMAK 1408
Cdd:PRK09984 7 VEKLAKTFNQH---QALHAVDLNIHHGEMVALLGPSGSGKSTLLrhlsGLITGDKSAGShiellGRTVQREGRLARDIRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1409 VQQWIGYCPEFDALLNFMTGREMLVMHArIRGIPecHIKTCVDMI-----------LENLLMCVYADKLVKTYSDGNKRV 1477
Cdd:PRK09984 84 SRANTGYIFQQFNLVNRLSVLENVLIGA-LGSTP--FWRTCFSWFtreqkqralqaLTRVGMVHFAHQRVSTLSGGQQQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1478 LSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRES-GKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:PRK09984 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNdGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240
|
....*....
gi 1958656855 1557 KS-RFGSGY 1564
Cdd:PRK09984 241 DNeRFDHLY 249
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
546-716 |
1.06e-11 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 65.98 E-value: 1.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 546 DLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVGWCPQHDILFDNFTVTDHLYFY 625
Cdd:PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFY 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 626 GQLKGLSHQDcheKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQ- 704
Cdd:PRK13538 99 QRLHGPGDDE---ALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQh 175
|
170
....*....|...
gi 1958656855 705 -QKGDrTVLLTTH 716
Cdd:PRK13538 176 aEQGG-MVILTTH 187
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
525-736 |
1.23e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 67.80 E-value: 1.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRSKCI-AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKG------------------HA 585
Cdd:PRK13651 3 IKVKNIVKIFNKKLPTELkALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGtiewifkdeknkkktkekEK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 586 YIHGCEISKDMVR-------IRKNVGWCPQHD--ILFDNfTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSR 656
Cdd:PRK13651 83 VLEKLVIQKTRFKkikkikeIRRRVGVVFQFAeyQLFEQ-TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 657 SKF-LSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQ-QKGDRTVLLTTHFMDEADLLGDRIAILAKG 734
Cdd:PRK13651 162 SPFeLSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNlNKQGKTIILVTHDLDNVLEWTKRTIFFKDG 241
|
..
gi 1958656855 735 EL 736
Cdd:PRK13651 242 KI 243
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
553-734 |
1.61e-11 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 66.14 E-value: 1.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 553 KGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGceisKDMVRI---RKNVGWCPQHDILFDNFTVTDH--LYFYGQ 627
Cdd:PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNG----QDHTTTppsRRPVSMLFQENNLFSHLTVAQNigLGLNPG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 628 LKgLSHQDcHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKG 707
Cdd:PRK10771 100 LK-LNAAQ-REKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQ 177
|
170 180
....*....|....*....|....*....
gi 1958656855 708 DR--TVLLTTHFMDEADLLGDRIAILAKG 734
Cdd:PRK10771 178 ERqlTLLMVSHSLEDAARIAPRSLVVADG 206
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
543-737 |
2.04e-11 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 68.85 E-value: 2.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS-KDMVRIRKnvgwcpQHDILFDNFTVTDH 621
Cdd:PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTaEQPEDYRK------LFSAVFTDFHLFDQ 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 622 LyfygqLKGLSHQDCHEKIEEMLHTLGLEDK------RNSRSKfLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSR 695
Cdd:PRK10522 412 L-----LGPEGKPANPALVEKWLERLKMAHKleledgRISNLK-LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFR 485
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958656855 696 RAIWDLL---QQQKGdRTVLLTTH---FMDEAdllgDRIAILAKGELQ 737
Cdd:PRK10522 486 REFYQVLlplLQEMG-KTIFAISHddhYFIHA----DRLLEMRNGQLS 528
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1335-1551 |
2.15e-11 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 68.66 E-value: 2.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1335 PLVvkELSKVYKEKVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKG--FNIRTDMAKVQQW 1412
Cdd:PRK09700 4 PYI--SMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNinYNKLDHKLAAQLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1413 IG-------YCPEFDALLNFMTGREMLvmhARIRGIP-----ECHIKTcvDMILENLLMCVYADKLVKTYSDGNKRVLST 1480
Cdd:PRK09700 82 IGiiyqelsVIDELTVLENLYIGRHLT---KKVCGVNiidwrEMRVRA--AMMLLRVGLKVDLDEKVANLSISHKQMLEI 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 1481 AIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLG 1551
Cdd:PRK09700 157 AKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
262-464 |
2.21e-11 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 67.41 E-value: 2.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 262 FPLLLMLSFICVELIITNSILLEKERKQKEYMYLMGLENWLHWVAWFITFFLSALVTVSGMTVLFCTKMngvavFRNSNT 341
Cdd:pfam12698 164 VGLILMIIILIGAAIIAVSIVEEKESRIKERLLVSGVSPLQYWLGKILGDFLVGLLQLLIILLLLFGIG-----IPFGNL 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 342 TLIFIFLMCFAIATIFFAFMMSTFFQRAHVGTVIGGIVFFFTYLPYMYITFSYHQRTYSQKILScLFSNVAMAMGVRFIs 421
Cdd:pfam12698 239 GLLLLLFLLYGLAYIALGYLLGSLFKNSEDAQSIIGIVILLLSGFFGGLFPLEDPPSFLQWIFS-IIPFFSPIDGLLRL- 316
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958656855 422 lfeaegtgiqwrNMGSVWgdFSFTQVLVMLLLDSFLYCLVAFL 464
Cdd:pfam12698 317 ------------IYGDSL--WEIAPSLIILLLFAVVLLLLALL 345
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
1345-1527 |
2.26e-11 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 65.71 E-value: 2.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1345 YKEKVPLLavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRT-DMAKVQQWIGYCPEfDALL 1423
Cdd:cd03254 12 YDEKKPVL--KDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDiSRKSLRSMIGVVLQ-DTFL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1424 -------NFMTGREMLVMHARIRGIPECHIKTCVdMILENLLMCVYADKlVKTYSDGNKRVLSTAIALLGEPTVILLDEP 1496
Cdd:cd03254 89 fsgtimeNIRLGRPNATDEEVIEAAKEAGAHDFI-MKLPNGYDTVLGEN-GGNLSQGERQLLAIARAMLRDPKILILDEA 166
|
170 180 190
....*....|....*....|....*....|.
gi 1958656855 1497 STGMDPVARRLVWDAVGRVREsGKTIVITSH 1527
Cdd:cd03254 167 TSNIDTETEKLIQEALEKLMK-GRTSIIIAH 196
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
550-728 |
2.37e-11 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 65.89 E-value: 2.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 550 NLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISkdmvrirknvgWCPQHDILFDNFTVTDHLYFYGQLK 629
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-----------YKPQYIKADYEGTVRDLLSSITKDF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 630 GLSHQdcheKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSR----RAIWDLLQQQ 705
Cdd:cd03237 90 YTHPY----FKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRlmasKVIRRFAENN 165
|
170 180
....*....|....*....|...
gi 1958656855 706 KgdRTVLLTTHFMDEADLLGDRI 728
Cdd:cd03237 166 E--KTAFVVEHDIIMIDYLADRL 186
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
1475-1611 |
2.45e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 66.58 E-value: 2.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1475 KRVlstAIA--LLGEPTVILLDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLG 1551
Cdd:PRK13634 152 RRV---AIAgvLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLhKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQG 228
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 1552 SPQHLKSR----FGSGYSLQAKVrrKWQQQMLEEFkafvDLTFPGSSL-EDEHQSMVQYYLPGQN 1611
Cdd:PRK13634 229 TPREIFADpdelEAIGLDLPETV--KFKRALEEKF----GISFPKPCLtLEELAHEVVQLLRKGG 287
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
526-736 |
2.48e-11 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 68.13 E-value: 2.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 526 EIQHLYkvfYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMV--RIRKNV 603
Cdd:COG3845 259 EVENLS---VRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPreRRRLGV 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 GWCP---QHDILFDNFTVTDH--LYFYGQlKGLS----------HQDCHEKIEEMlhtlgleDKR----NSRSKFLSGGI 664
Cdd:COG3845 336 AYIPedrLGRGLVPDMSVAENliLGRYRR-PPFSrggfldrkaiRAFAEELIEEF-------DVRtpgpDTPARSLSGGN 407
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 665 KRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWD-LLQQQKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:COG3845 408 QQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQrLLELRDAGAAVLLISEDLDEILALSDRIAVMYEGRI 480
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1354-1546 |
2.60e-11 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 68.27 E-value: 2.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1354 VNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI--RTDMAKVQQWIGYCPE-------FDallN 1424
Cdd:PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIspRSPLDAVKKGMAYITEsrrdngfFP---N 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1425 FMTGREMLVMH----ARIRGI-----PECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDE 1495
Cdd:PRK09700 356 FSIAQNMAISRslkdGGYKGAmglfhEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE 435
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 1496 PSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:PRK09700 436 PTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGR 486
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
542-755 |
2.75e-11 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 69.20 E-value: 2.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 542 IAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNVGWCPQHDILFDNfTVTD 620
Cdd:TIGR00957 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKiGLHDLRFKITIIPQDPVLFSG-SLRM 1378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 621 HLYFYGQLkglSHQDCHEKIE-EMLHTL--GLEDKRNSR----SKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSS 693
Cdd:TIGR00957 1379 NLDPFSQY---SDEEVWWALElAHLKTFvsALPDKLDHEcaegGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLE 1455
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 694 SRRAIWDLLQQQKGDRTVLLTTH----FMDEAdllgdRIAILAKGELQCCGTPSFLKQKYGAGYYM 755
Cdd:TIGR00957 1456 TDNLIQSTIRTQFEDCTVLTIAHrlntIMDYT-----RVIVLDKGEVAEFGAPSNLLQQRGIFYSM 1516
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1336-1545 |
3.03e-11 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 65.57 E-value: 3.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTR------EQPITsGDAFVKGFNI---RTDM 1406
Cdd:PRK14239 6 LQVSDLSVYYNKKK---ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRmndlnpEVTIT-GSIVYNGHNIyspRTDT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1407 AKVQQWIGYCpeFDALLNF-MTGREMLVMHARIRGIPEchiKTCVDMILENLLMCVYADKLVK--------TYSDGNKRV 1477
Cdd:PRK14239 82 VDLRKEIGMV--FQQPNPFpMSIYENVVYGLRLKGIKD---KQVLDEAVEKSLKGASIWDEVKdrlhdsalGLSGGQQQR 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 1478 LSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESgKTIVITSHSMEECEALCTRLAIMVQG 1545
Cdd:PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDD-YTMLLVTRSMQQASRISDRTGFFLDG 223
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
556-734 |
3.37e-11 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 66.82 E-value: 3.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 556 ITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRI-----RKNVGWCPQHDILFDNFTVTdhlyfyGQLK- 629
Cdd:PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGIclppeKRRIGYVFQDARLFPHYKVR------GNLRy 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 630 GLSHQDCHE--KIEEMLhtlGLED--KRNSRSkfLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQ- 704
Cdd:PRK11144 100 GMAKSMVAQfdKIVALL---GIEPllDRYPGS--LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERl 174
|
170 180 190
....*....|....*....|....*....|.
gi 1958656855 705 -QKGDRTVLLTTHFMDEADLLGDRIAILAKG 734
Cdd:PRK11144 175 aREINIPILYVSHSLDEILRLADRVVVLEQG 205
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
554-716 |
3.79e-11 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 67.98 E-value: 3.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 554 GQITVLLGHNGAGKTTVCSVLTGLIPPS--KGHAYIHGCEISKdmvRIRKNVGWCPQHDILFDNFTVTDHLYFYGQL--- 628
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGRIQGNnfTGTILANNRKPTK---QILKRTGFVTQDDILYPHLTVRETLVFCSLLrlp 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 629 KGLSHQDCHEKIEEMLHTLGLEDKRN-----SRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSR-RAIWDLL 702
Cdd:PLN03211 171 KSLTKQEKILVAESVISELGLTKCENtiignSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAyRLVLTLG 250
|
170
....*....|....
gi 1958656855 703 QQQKGDRTVLLTTH 716
Cdd:PLN03211 251 SLAQKGKTIVTSMH 264
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
543-742 |
3.88e-11 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 64.36 E-value: 3.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNVGWCPQHDILFDNfTVTDH 621
Cdd:cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTiPLEDLRSSLTIIPQDPTLFSG-TIRSN 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 622 LYFYGQlkglsHQDchEKIEEMLHTlgLEDKRNsrskfLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDL 701
Cdd:cd03369 102 LDPFDE-----YSD--EEIYGALRV--SEGGLN-----LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKT 167
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1958656855 702 LQQQKGDRTVLLTTHFMDE-ADLlgDRIAILAKGELQCCGTP 742
Cdd:cd03369 168 IREEFTNSTILTIAHRLRTiIDY--DKILVMDAGEVKEYDHP 207
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1353-1556 |
5.02e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 65.64 E-value: 5.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1353 AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI---RTDMAKVQQWIGYC-PEFDALLNFMTG 1428
Cdd:PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIdysRKGLMKLRESVGMVfQDPDNQLFSASV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1429 REMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLV 1508
Cdd:PRK13636 101 YQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEI 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958656855 1509 WDAVGRV-RESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:PRK13636 181 MKLLVEMqKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1340-1556 |
5.09e-11 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 64.73 E-value: 5.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1340 ELSKVYKEKVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGF----------NIRTDMAKV 1409
Cdd:PRK09493 3 EFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLkvndpkvderLIRQEAGMV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1410 QQWIGYCPEFDALLNFMTGRemlvmhARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPT 1489
Cdd:PRK09493 83 FQQFYLFPHLTALENVMFGP------LRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPK 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 1490 VILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:PRK09493 157 LMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
544-742 |
5.77e-11 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 66.79 E-value: 5.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI-SKDMVRIRKNVGWCPQHDILFDNFTV---- 618
Cdd:PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVeALSARAASRRVASVPQDTSLSFEFDVrqvv 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 619 ----TDHLyfyGQLKGLSHQDcHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSS 694
Cdd:PRK09536 99 emgrTPHR---SRFDTWTETD-RAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINH 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958656855 695 RRAIWDLLQQQKGD-RTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:PRK09536 175 QVRTLELVRRLVDDgKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPP 223
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1332-1560 |
7.44e-11 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 65.90 E-value: 7.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1332 KKSPLVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLT-REQPiTSGDAFVKGFNIrTDMAKVQ 1410
Cdd:PRK11432 3 QKNFVVLKNITKRFGSNT---VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAgLEKP-TEGQIFIDGEDV-THRSIQQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1411 QWIgyCPEFD--ALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEP 1488
Cdd:PRK11432 78 RDI--CMVFQsyALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1489 TVILLDEPSTGMDPVARRLVWDavgRVRESGKTIVITS----HSMEECEALCTRLAIMVQGQFKCLGSPQHL----KSRF 1560
Cdd:PRK11432 156 KVLLFDEPLSNLDANLRRSMRE---KIRELQQQFNITSlyvtHDQSEAFAVSDTVIVMNKGKIMQIGSPQELyrqpASRF 232
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
525-735 |
8.07e-11 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 66.77 E-value: 8.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPS--KGHAYIHGCEISKDMVRI--R 600
Cdd:TIGR02633 2 LEMKGIVKTF--GGVK--ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGtwDGEIYWSGSPLKASNIRDteR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 KNVGWCPQHDILFDNFTVTDHLYFYGQLK---GLSHQDC-HEKIEEMLHTLGLEDKRNSRSKF-LSGGIKRKLAIGIALI 675
Cdd:TIGR02633 78 AGIVIIHQELTLVPELSVAENIFLGNEITlpgGRMAYNAmYLRAKNLLRELQLDADNVTRPVGdYGGGQQQLVEIAKALN 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 676 AGSKVLILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLtTHFMDEADLLGDRIAILAKGE 735
Cdd:TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRdlKAHGVACVYI-SHKLNEVKAVCDTICVIRDGQ 218
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1338-1546 |
1.09e-10 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 65.10 E-value: 1.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1338 VKELSKVYKEKV-PLLAVNKVSFVVKEKECFGLLGLNGAGKTS---IFNMLtrEQPiTSGDAFVKGFNI----RTDMAKV 1409
Cdd:COG1135 4 LENLSKTFPTKGgPVTALDDVSLTIEKGEIFGIIGYSGAGKSTlirCINLL--ERP-TSGSVLVDGVDLtalsERELRAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1410 QQWIGYCPEFDALLNFMTGRE--MLVMhaRIRGIPECHIKTCVDMILE--NLlmcvyADKlVKTY----SDGNK-RVlst 1480
Cdd:COG1135 81 RRKIGMIFQHFNLLSSRTVAEnvALPL--EIAGVPKAEIRKRVAELLElvGL-----SDK-ADAYpsqlSGGQKqRV--- 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 1481 AIA--LLGEPTVILLDEPSTGMDP-----VARRLVwdavgRV-RESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:COG1135 150 GIAraLANNPKVLLCDEATSALDPettrsILDLLK-----DInRELGLTIVLITHEMDVVRRICDRVAVLENGR 218
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1351-1558 |
1.53e-10 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 63.47 E-value: 1.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1351 LLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI---------RTDMAKVQQWIGYCPEFDA 1421
Cdd:PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIeglpghqiaRMGVVRTFQHVRLFREMTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1422 LLNFMTGREMLVMHARIRGIpechIKT---------CVD---MILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPT 1489
Cdd:PRK11300 98 IENLLVAQHQQLKTGLFSGL----LKTpafrraeseALDraaTWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPE 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1490 VILLDEPSTGMDPVARRLVWDAVGRVR-ESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKS 1558
Cdd:PRK11300 174 ILMLDEPAAGLNPKETKELDELIAELRnEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
535-750 |
1.59e-10 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 65.75 E-value: 1.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 535 YTGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISkDMVR--IRKNVGWCPQHDIL 612
Cdd:PRK13657 344 YDNSRQ--GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIR-TVTRasLRRNIAVVFQDAGL 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 613 FdNFTVTDHLYFyGQ--------LKGLSHQDCHEKIEEmlHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:PRK13657 421 F-NRSIEDNIRV-GRpdatdeemRAAAERAQAHDFIER--KPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILD 496
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 685 EPTSGMDSSSRRAIWDLLQQQKGDRTVLLTTHFMD---EAdllgDRIAILAKGELQCCGTPSFLKQKYG 750
Cdd:PRK13657 497 EATSALDVETEAKVKAALDELMKGRTTFIIAHRLStvrNA----DRILVFDNGRVVESGSFDELVARGG 561
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
522-735 |
1.73e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 63.52 E-value: 1.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 522 INAIEIQHLykVFYTGRSKCiaVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPS-----KGHAYIHGCEISKDM 596
Cdd:PRK14258 5 IPAIKVNNL--SFYYDTQKI--LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELEsevrvEGRVEFFNQNIYERR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 597 V---RIRKNVGWCPQHDILFDnFTVTDHLYFYGQLKG--------------LSHQDCHEKIEEMLHTLGLEdkrnsrskf 659
Cdd:PRK14258 81 VnlnRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGwrpkleiddivesaLKDADLWDEIKHKIHKSALD--------- 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 660 LSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQ--KGDRTVLLTTHFMDEADLLGDRIAILAKGE 735
Cdd:PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLrlRSELTMVIVSHNLHQVSRLSDFTAFFKGNE 228
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1354-1554 |
2.24e-10 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 64.86 E-value: 2.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1354 VNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIR-TDMAKVQQWIGYCPEfDALLNF-MTGREM 1431
Cdd:PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEaLSARAASRRVASVPQ-DTSLSFeFDVRQV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1432 LVM----H-ARIRGIPECHiKTCVDMILENLLMCVYADKLVKTYSDGNK-RVLsTAIALLGEPTVILLDEPSTGMD---- 1501
Cdd:PRK09536 98 VEMgrtpHrSRFDTWTETD-RAAVERAMERTGVAQFADRPVTSLSGGERqRVL-LARALAQATPVLLLDEPTASLDinhq 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 1502 ----PVARRLVwdavgrvrESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1554
Cdd:PRK09536 176 vrtlELVRRLV--------DDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPA 224
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1336-1553 |
3.54e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 63.33 E-value: 3.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVP--LLAVNKVSFVVKEKECFGLLGLNGAGKTSI---FNMLTREQpitSGDAFVKGFNIRTDMAKVQ 1410
Cdd:PRK13631 22 LRVKNLYCVFDEKQEneLVALNNISYTFEKNKIYFIIGNSGSGKSTLvthFNGLIKSK---YGTIQVGDIYIGDKKNNHE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1411 QWIGYCPEfdALLNFMTGREMLVMharIRGIPECHI-KTCV--DMILENLLMCVY---ADKLVKTY-------------- 1470
Cdd:PRK13631 99 LITNPYSK--KIKNFKELRRRVSM---VFQFPEYQLfKDTIekDIMFGPVALGVKkseAKKLAKFYlnkmglddsylers 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1471 ----SDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:PRK13631 174 pfglSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253
|
....*..
gi 1958656855 1547 FKCLGSP 1553
Cdd:PRK13631 254 ILKTGTP 260
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
547-736 |
3.86e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 62.81 E-value: 3.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 547 LSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAY-----IHGCEI--SKDMVRIRKNVGWCPQHDILFDNFTVT 619
Cdd:PRK14271 40 VSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYsgdvlLGGRSIfnYRDVLEFRRRVGMLFQRPNPFPMSIMD 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 620 DHLYFYGQLKGLSHQDCHEKIEEMLHTLGLED---KRNSRSKF-LSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSR 695
Cdd:PRK14271 120 NVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDavkDRLSDSPFrLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTT 199
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958656855 696 RAIWDLLQQQKGDRTVLLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:PRK14271 200 EKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRL 240
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
1368-1553 |
4.13e-10 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 62.72 E-value: 4.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1368 GLLGLNGAGKTSIFNMLTREQPITSGDAFVKG----FNIRTDMAKVQQWIGYCPEFDALLNFMTGREMLVMHARIRGIPE 1443
Cdd:PRK13638 31 GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGkpldYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPE 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1444 CHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIV 1523
Cdd:PRK13638 111 AEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVI 190
|
170 180 190
....*....|....*....|....*....|
gi 1958656855 1524 ITSHSMEECEALCTRLAIMVQGQFKCLGSP 1553
Cdd:PRK13638 191 ISSHDIDLIYEISDAVYVLRQGQILTHGAP 220
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
1353-1551 |
4.18e-10 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 62.53 E-value: 4.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1353 AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGfnirtDMAKVQqwigycpeFDALLNF-MTGREM 1431
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-----EVSVIA--------ISAGLSGqLTGIEN 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1432 LVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDA 1511
Cdd:PRK13546 106 IEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDK 185
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958656855 1512 VGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLG 1551
Cdd:PRK13546 186 IYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYG 225
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1336-1542 |
4.59e-10 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 63.15 E-value: 4.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYK-EKVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTR---EQPITSGDAFVKGFNIRT------- 1404
Cdd:COG0444 2 LEVRNLKVYFPtRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGllpPPGITSGEILFDGEDLLKlsekelr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1405 -----DMAKVQQwigycpefDAL--LN-FMT-GR---EMLVMH---------ARIR------GIPEchiktcvdmilenl 1457
Cdd:COG0444 82 kirgrEIQMIFQ--------DPMtsLNpVMTvGDqiaEPLRIHgglskaearERAIellervGLPD-------------- 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1458 lmcvyADKLVKTY----SDGNK-RVLsTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGR-VRESGKTIVITSHSMEE 1531
Cdd:COG0444 140 -----PERRLDRYphelSGGMRqRVM-IARALALEPKLLIADEPTTALDVTIQAQILNLLKDlQRELGLAILFITHDLGV 213
|
250
....*....|.
gi 1958656855 1532 CEALCTRLAIM 1542
Cdd:COG0444 214 VAEIADRVAVM 224
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
1338-1546 |
4.68e-10 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 61.39 E-value: 4.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1338 VKELSKVYKEKVPLlavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI---RTDMAKVQQWIG 1414
Cdd:cd03262 3 IKNLHKSFGDFHVL---KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLtddKKNINELRQKVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1415 YC-------PEFDALLNFMTGremLVmhaRIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGE 1487
Cdd:cd03262 80 MVfqqfnlfPHLTVLENITLA---PI---KVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMN 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 1488 PTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1350-1547 |
4.92e-10 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 64.30 E-value: 4.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1350 PLLAVNK--------VSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTD--MAKVQQWIGYCPE- 1418
Cdd:PRK15439 267 PVLTVEDltgegfrnISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALstAQRLARGLVYLPEd 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1419 -------FDALL---------NFM-----TGREMLVMHARIRGIpecHIKtcvdmilenllmCVYADKLVKTYSDGNKRV 1477
Cdd:PRK15439 347 rqssglyLDAPLawnvcalthNRRgfwikPARENAVLERYRRAL---NIK------------FNHAEQAARTLSGGNQQK 411
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1478 LSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQF 1547
Cdd:PRK15439 412 VLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
525-730 |
4.94e-10 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 63.21 E-value: 4.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRS---------KciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK- 594
Cdd:COG4608 8 LEVRDLKKHFPVRGGlfgrtvgvvK--AVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGl 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 595 ---DMVRIRKNVgwcpQhdILFDN--------FTVtdhlyfyGQLKG--------LSHQDCHEKIEEMLHTLGLedKRNS 655
Cdd:COG4608 86 sgrELRPLRRRM----Q--MVFQDpyaslnprMTV-------GDIIAeplrihglASKAERRERVAELLELVGL--RPEH 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 656 RSKF---LSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHfmdeaDL-----LG 725
Cdd:COG4608 151 ADRYpheFSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEdlQDELGLTYLFISH-----DLsvvrhIS 225
|
....*
gi 1958656855 726 DRIAI 730
Cdd:COG4608 226 DRVAV 230
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
534-735 |
5.13e-10 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 64.49 E-value: 5.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 534 FYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAY-------------IHGCEIS-KDMVRI 599
Cdd:PRK10261 22 FMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQcdkmllrrrsrqvIELSEQSaAQMRHV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 600 R-KNVGWCPQHDILFDN--FTVTDHLYFYGQL-KGLSHQDCHEKIEEMLHTLGLEDKRNSRSKF---LSGGIKRKLAIGI 672
Cdd:PRK10261 102 RgADMAMIFQEPMTSLNpvFTVGEQIAESIRLhQGASREEAMVEAKRMLDQVRIPEAQTILSRYphqLSGGMRQRVMIAM 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 673 ALIAGSKVLILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHFMDEADLLGDRIAILAKGE 735
Cdd:PRK10261 182 ALSCRPAVLIADEPTTALDVTIQAQILQLIKvlQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
553-731 |
7.37e-10 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 63.65 E-value: 7.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 553 KGQITVLLGHNGAGKTTVCSVLTGLIPPSKGhayIHGCEISKDMVrIRKNVGwcpqhDILFDnftvtdhlYFYG------ 626
Cdd:COG1245 98 KGKVTGILGPNGIGKSTALKILSGELKPNLG---DYDEEPSWDEV-LKRFRG-----TELQD--------YFKKlangei 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 627 --------------QLKG-----LSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPT 687
Cdd:COG1245 161 kvahkpqyvdlipkVFKGtvrelLEKVDERGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPS 240
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958656855 688 SGMDSSSR----RAIWDLLqqqKGDRTVLLTTHfmDEA--DLLGDRIAIL 731
Cdd:COG1245 241 SYLDIYQRlnvaRLIRELA---EEGKYVLVVEH--DLAilDYLADYVHIL 285
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1332-1568 |
7.82e-10 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 61.95 E-value: 7.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1332 KKSPLVVKELSKVYKEKVPLlAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGF--------NIR 1403
Cdd:PRK13635 2 KEEIIRVEHISFRYPDAATY-ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMvlseetvwDVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1404 TDMAKV-----QQWIGYCPEFD---ALLNfmtgremlvmhariRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNK 1475
Cdd:PRK13635 81 RQVGMVfqnpdNQFVGATVQDDvafGLEN--------------IGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1476 -RVlstAIA--LLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVIT-SHSMEECeALCTRLAIMVQGQFKCLG 1551
Cdd:PRK13635 147 qRV---AIAgvLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSiTHDLDEA-AQADRVIVMNKGEILEEG 222
|
250
....*....|....*..
gi 1958656855 1552 SPQHLksrFGSGYSLQA 1568
Cdd:PRK13635 223 TPEEI---FKSGHMLQE 236
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
546-716 |
8.15e-10 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 60.27 E-value: 8.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 546 DLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKdmvrIRKNVGWCPQHDI-LFDNFTVTDHLYF 624
Cdd:PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINN----IAKPYCTYIGHNLgLKLEMTVFENLKF 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 625 YGQLkglshQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLL-Q 703
Cdd:PRK13541 94 WSEI-----YNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIvM 168
|
170
....*....|...
gi 1958656855 704 QQKGDRTVLLTTH 716
Cdd:PRK13541 169 KANSGGIVLLSSH 181
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
525-716 |
8.84e-10 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 62.43 E-value: 8.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPS---KGHAYIHGCEI----SKDMV 597
Cdd:PRK09473 13 LDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANgriGGSATFNGREIlnlpEKELN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 598 RIRKNvgwcpQHDILF-DNFT-------VTDHLYFYGQL-KGLSHQDCHEKIEEMLHTLGLEDKRNSRSKF---LSGGIK 665
Cdd:PRK09473 93 KLRAE-----QISMIFqDPMTslnpymrVGEQLMEVLMLhKGMSKAEAFEESVRMLDAVKMPEARKRMKMYpheFSGGMR 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 666 RKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGD--RTVLLTTH 716
Cdd:PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREfnTAIIMITH 220
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
522-707 |
1.01e-09 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 61.90 E-value: 1.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 522 INAIEIQHLYKV---FYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI---SKD 595
Cdd:PRK11308 6 LQAIDLKKHYPVkrgLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLlkaDPE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 596 MVR-IRKNVgwcpqhDILFDNFtvtdhlyfYGQLK-----------------GLSHQDCHEKIEEMLHTLGLEDKRNSR- 656
Cdd:PRK11308 86 AQKlLRQKI------QIVFQNP--------YGSLNprkkvgqileepllintSLSAAERREKALAMMAKVGLRPEHYDRy 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 657 SKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDL---LQQQKG 707
Cdd:PRK11308 152 PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLmmdLQQELG 205
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
544-716 |
1.14e-09 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 61.24 E-value: 1.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK----DMVRIRKNVGWCPQHDILFDN--FT 617
Cdd:PRK10419 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKlnraQRKAFRRDIQMVFQDSISAVNprKT 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 618 VTD-------HLyfygqlKGLSHQDCHEKIEEMLHTLGLEDKRNSR-SKFLSGGIKRKLAIGIALIAGSKVLILDEPTSG 689
Cdd:PRK10419 108 VREiireplrHL------LSLDKAERLARASEMLRAVDLDDSVLDKrPPQLSGGQLQRVCLARALAVEPKLLILDEAVSN 181
|
170 180
....*....|....*....|....*....
gi 1958656855 690 MDSSSRRAIWDLLQ--QQKGDRTVLLTTH 716
Cdd:PRK10419 182 LDLVLQAGVIRLLKklQQQFGTACLFITH 210
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
544-742 |
1.25e-09 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 60.90 E-value: 1.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGhayihgceISKDMVRIRknVGWCPQHDILFDNFTVTDHLY 623
Cdd:PRK09544 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG--------VIKRNGKLR--IGYVPQKLYLDTTLPLTVNRF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 624 FygQLK-GLSHQDchekIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLL 702
Cdd:PRK09544 90 L--RLRpGTKKED----ILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLI 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1958656855 703 QQ--QKGDRTVLLTTHFM-------DEADLLGDRIAilakgelqCCGTP 742
Cdd:PRK09544 164 DQlrRELDCAVLMVSHDLhlvmaktDEVLCLNHHIC--------CSGTP 204
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1338-1565 |
1.34e-09 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 62.90 E-value: 1.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1338 VKELSKVYKEKVPLlavNKVSFVVKEKECFGLLGLNGAGKTSIFNML--TREQPITSGDAFVK-GFNIRTDMAKVQQWIG 1414
Cdd:TIGR03269 3 VKNLTKKFDGKEVL---KNISFTIEEGEVLGILGRSGAGKSVLMHVLrgMDQYEPTSGRIIYHvALCEKCGYVERPSKVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1415 Y-CP-------EFDALL---------NFMtgREMLVMHAR--------------IRGIPECHI--KTCVDMILENLLMCV 1461
Cdd:TIGR03269 80 EpCPvcggtlePEEVDFwnlsdklrrRIR--KRIAIMLQRtfalygddtvldnvLEALEEIGYegKEAVGRAVDLIEMVQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1462 YADK---LVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGR-VRESGKTIVITSHSMEECEALCT 1537
Cdd:TIGR03269 158 LSHRithIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEaVKASGISMVLTSHWPEVIEDLSD 237
|
250 260
....*....|....*....|....*...
gi 1958656855 1538 RLAIMVQGQFKCLGSPQHLKSRFGSGYS 1565
Cdd:TIGR03269 238 KAIWLENGEIKEEGTPDEVVAVFMEGVS 265
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1357-1528 |
1.93e-09 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 59.50 E-value: 1.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1357 VSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQqwIGYCPEFDALLNFMTGREMLVMHA 1436
Cdd:PRK13539 21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEA--CHYLGHRNAMKPALTVAENLEFWA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1437 RIRGIPECHIKTCVDMI-LENLlmcvyADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRV 1515
Cdd:PRK13539 99 AFLGGEELDIAAALEAVgLAPL-----AHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAH 173
|
170
....*....|...
gi 1958656855 1516 RESGKTIVITSHS 1528
Cdd:PRK13539 174 LAQGGIVIAATHI 186
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
554-716 |
2.12e-09 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 62.94 E-value: 2.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 554 GQITVLLGHNGAGKTTVCSVLTGlippSKGHAYIHG-CEIS------KDMVRIRknvGWCPQHDILFDNFTVTDHLYFYG 626
Cdd:PLN03140 906 GVLTALMGVSGAGKTTLMDVLAG----RKTGGYIEGdIRISgfpkkqETFARIS---GYCEQNDIHSPQVTVRESLIYSA 978
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 627 QL---KGLSHQDCHEKIEEMLHTLGLEDKRNSRSKF-----LSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSS---- 694
Cdd:PLN03140 979 FLrlpKEVSKEEKMMFVDEVMELVELDNLKDAIVGLpgvtgLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAaaiv 1058
|
170 180
....*....|....*....|..
gi 1958656855 695 RRAIWDLLQQqkgDRTVLLTTH 716
Cdd:PLN03140 1059 MRTVRNTVDT---GRTVVCTIH 1077
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
546-741 |
2.32e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 62.69 E-value: 2.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 546 DLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAyihgceiskdmVRIRKNVGWCPQHDILFdNFTVTDHLYFY 625
Cdd:PLN03232 635 DINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS-----------VVIRGSVAYVPQVSWIF-NATVRENILFG 702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 626 GQLKGLSHQDCHEkIEEMLHTLGLEDKRN-----SRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWD 700
Cdd:PLN03232 703 SDFESERYWRAID-VTALQHDLDLLPGRDlteigERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFD 781
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1958656855 701 --LLQQQKGDRTVLLTT--HFMDeadlLGDRIAILAKGELQCCGT 741
Cdd:PLN03232 782 scMKDELKGKTRVLVTNqlHFLP----LMDRIILVSEGMIKEEGT 822
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
521-691 |
2.43e-09 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 60.16 E-value: 2.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 521 HINAIEIQHLYkvfYTGRSKCIaVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKdMVR-- 598
Cdd:PRK11831 4 VANLVDMRGVS---FTRGNRCI-FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPA-MSRsr 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 599 ---IRKNVGWCPQHDILFDNFTVTDHLYF-YGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIAL 674
Cdd:PRK11831 79 lytVRKRMSMLFQSGALFTDMNVFDNVAYpLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAI 158
|
170
....*....|....*..
gi 1958656855 675 IAGSKVLILDEPTSGMD 691
Cdd:PRK11831 159 ALEPDLIMFDEPFVGQD 175
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1353-1547 |
2.67e-09 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 61.85 E-value: 2.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1353 AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKG----FNIRTD-----MAKVQQWIGYCPEFDALL 1423
Cdd:PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGqemrFASTTAalaagVAIIYQELHLVPEMTVAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1424 NFMTG----------REMLVMHARIRgipechiktcvdmiLENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILL 1493
Cdd:PRK11288 99 NLYLGqlphkggivnRRLLNYEAREQ--------------LEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAF 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 1494 DEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQF 1547
Cdd:PRK11288 165 DEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRY 218
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
1355-1560 |
3.63e-09 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 60.48 E-value: 3.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1355 NKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQQwIGYCPEFDALLNFMT------- 1427
Cdd:PRK10851 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK-VGFVFQHYALFRHMTvfdniaf 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1428 GREMLVMHARirgiPECH-IKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARR 1506
Cdd:PRK10851 98 GLTVLPRRER----PNAAaIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRK 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 1507 LVWDAVGRVRESGK-TIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL----KSRF 1560
Cdd:PRK10851 174 ELRRWLRQLHEELKfTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVwrepATRF 232
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
521-716 |
4.47e-09 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 61.06 E-value: 4.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 521 HINAIEIQHLYKVFYTGrskcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHayIHGCEISkdmvrir 600
Cdd:PRK15064 316 HRNALEVENLTKGFDNG----PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGT--VKWSENA------- 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 601 kNVGWCPQ-HDILFDN-FTVTDhlyFYGQLKGLSHQDchEKIEEML-HTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAG 677
Cdd:PRK15064 383 -NIGYYAQdHAYDFENdLTLFD---WMSQWRQEGDDE--QAVRGTLgRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQK 456
|
170 180 190
....*....|....*....|....*....|....*....
gi 1958656855 678 SKVLILDEPTSGMDSSSRRAIWDLLQQQKGdrTVLLTTH 716
Cdd:PRK15064 457 PNVLVMDEPTNHMDMESIESLNMALEKYEG--TLIFVSH 493
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
530-734 |
4.84e-09 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 61.66 E-value: 4.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 530 LYKVFYTGRSKCIaVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHA--YIHGCEISKD--MVRIRKNVGW 605
Cdd:TIGR00956 64 KLKKFRDTKTFDI-LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVegVITYDGITPEeiKKHYRGDVVY 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 606 CPQHDILFDNFTVTDHLYFYGQLK-------GLSHQDCHEKIEEM-LHTLGLEDKRNSRS-----KFLSGGIKRKLAIGI 672
Cdd:TIGR00956 143 NAETDVHFPHLTVGETLDFAARCKtpqnrpdGVSREEYAKHIADVyMATYGLSHTRNTKVgndfvRGVSGGERKRVSIAE 222
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 673 ALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKgdrTVLLTTHFM------DEADLLGDRIAILAKG 734
Cdd:TIGR00956 223 ASLGGAKIQCWDNATRGLDSATALEFIRALKTSA---NILDTTPLVaiyqcsQDAYELFDKVIVLYEG 287
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1354-1548 |
5.40e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 60.61 E-value: 5.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1354 VNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQP-ITSGDAFVKG--FNIRTDMAKVQQWIGYCPEfD---------- 1420
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPgKFEGNVFINGkpVDIRNPAQAIRAGIAMVPE-Drkrhgivpil 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1421 --------ALLNFMTGREMLVMHARI----RGIPECHIKTcvdmilenllmcVYADKLVKTYSDGNKRVLSTAIALLGEP 1488
Cdd:TIGR02633 355 gvgknitlSVLKSFCFKMRIDAAAELqiigSAIQRLKVKT------------ASPFLPIGRLSGGNQQKAVLAKMLLTNP 422
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1489 TVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFK 1548
Cdd:TIGR02633 423 RVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
545-734 |
6.43e-09 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 58.05 E-value: 6.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 545 KDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPpskghayihgCEISKDMVRIRKNvgwcpqhdILFDNFTVTDHLYf 624
Cdd:COG2401 47 RDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALK----------GTPVAGCVDVPDN--------QFGREASLIDAIG- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 625 ygqlkglSHQDCHEKIeEMLHTLGLEDKRNSRSKF--LSGGIKRKLAIGIALIAGSKVLILDEPTSGMD-SSSRR--AIW 699
Cdd:COG2401 108 -------RKGDFKDAV-ELLNAVGLSDAVLWLRRFkeLSTGQKFRFRLALLLAERPKLLVIDEFCSHLDrQTAKRvaRNL 179
|
170 180 190
....*....|....*....|....*....|....*.
gi 1958656855 700 DLLQQQKGdRTVLLTTHFMD-EADLLGDRIAILAKG 734
Cdd:COG2401 180 QKLARRAG-ITLVVATHHYDvIDDLQPDLLIFVGYG 214
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1333-1539 |
6.59e-09 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 60.46 E-value: 6.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1333 KSPLVVKELSKVYKEKvPLLavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDaFVKGFNIRtdmakvqqw 1412
Cdd:COG0488 313 KKVLELEGLSKSYGDK-TLL--DDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGT-VKLGETVK--------- 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1413 IGYcpeFDALLNFMTGREMLVMHARiRGIPECHIKTCVDMiLENLL----McvyADKLVKTYSDGNKRVLSTAIALLGEP 1488
Cdd:COG0488 380 IGY---FDQHQEELDPDKTVLDELR-DGAPGGTEQEVRGY-LGRFLfsgdD---AFKPVGVLSGGEKARLALAKLLLSPP 451
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 1489 TVILLDEPSTGMDPVARRLVWDAV----GrvresgkTIVITSHSMEECEALCTRL 1539
Cdd:COG0488 452 NVLLLDEPTNHLDIETLEALEEALddfpG-------TVLLVSHDRYFLDRVATRI 499
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1326-1546 |
6.69e-09 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 60.40 E-value: 6.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1326 HLDTLIKKSPLVVKELSKvykekvplLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKG--FNIR 1403
Cdd:PRK10762 248 RLDKAPGEVRLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGheVVTR 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1404 TDMAKVQQWIGYCPE---FDALLNFMTGREMLVMHA---------RIRGIPEchIKTCVDMILENLLMCVYADKLVKTYS 1471
Cdd:PRK10762 320 SPQDGLANGIVYISEdrkRDGLVLGMSVKENMSLTAlryfsraggSLKHADE--QQAVSDFIRLFNIKTPSMEQAIGLLS 397
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 1472 DGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:PRK10762 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1334-1559 |
8.32e-09 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 58.22 E-value: 8.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1334 SPLVVKELSKVYKEKVPLlavNKVSFVVKEKECFGLLGLNGAGKTSIF---NMLtrEQPiTSGDAFVKGFNIRTDMA--- 1407
Cdd:PRK11264 2 SAIEVKNLVKKFHGQTVL---HGIDLEVKPGEVVAIIGPSGSGKTTLLrciNLL--EQP-EAGTIRVGDITIDTARSlsq 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1408 ------KVQQWIGYC-------PEFDALLNFMTGREMlvmharIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGN 1474
Cdd:PRK11264 76 qkglirQLRQHVGFVfqnfnlfPHRTVLENIIEGPVI------VKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1475 KRVLSTAIALLGEPTVILLDEPSTGMDPvarRLVWDAVGRVR---ESGKTIVITSHSMEECEALCTRL------AIMVQG 1545
Cdd:PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDP---ELVGEVLNTIRqlaQEKRTMVIVTHEMSFARDVADRAifmdqgRIVEQG 226
|
250
....*....|....*
gi 1958656855 1546 QFKCL-GSPQHLKSR 1559
Cdd:PRK11264 227 PAKALfADPQQPRTR 241
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
547-685 |
8.57e-09 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 60.20 E-value: 8.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 547 LSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDmvrirkNVGWCPQH-DILFDNFTVTDHLYfy 625
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVTAD------NREAYRQLfSAVFSDFHLFDRLL-- 422
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 626 gqlkGLSHQDCHEKIEEMLHTLGLEDK---RNSRskF----LSGGIKRKLAIGIALIAGSKVLILDE 685
Cdd:COG4615 423 ----GLDGEADPARARELLERLELDHKvsvEDGR--FsttdLSQGQRKRLALLVALLEDRPILVFDE 483
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
525-737 |
8.60e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 60.22 E-value: 8.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHL--YKVFYTGRSKciaVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPS-KGHAYIHG--CEISKDMVRI 599
Cdd:TIGR02633 258 LEARNLtcWDVINPHRKR---VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGkpVDIRNPAQAI 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 600 RKNVGWCPQ----HDILFD-----NFT--VTDHLYFYGQLKGLSHQDChekIEEMLHTLGLEdkrnSRSKFL-----SGG 663
Cdd:TIGR02633 335 RAGIAMVPEdrkrHGIVPIlgvgkNITlsVLKSFCFKMRIDAAAELQI---IGSAIQRLKVK----TASPFLpigrlSGG 407
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 664 IKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFmdeADLLG--DRIAILAKGELQ 737
Cdd:TIGR02633 408 NQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQlaQEGVAIIVVSSEL---AEVLGlsDRVLVIGEGKLK 482
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
543-706 |
1.00e-08 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 58.95 E-value: 1.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI----SKDMVRIRKNVGWCPQHDI--LFDNF 616
Cdd:PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLlgmkDDEWRAVRSDIQMIFQDPLasLNPRM 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 617 TVTDHL-----YFYGQlkgLSHQDCHEKIEEMLHTLGL-EDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGM 690
Cdd:PRK15079 116 TIGEIIaeplrTYHPK---LSRQEVKDRVKAMMLKVGLlPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 192
|
170
....*....|....*..
gi 1958656855 691 DSSSRRAIWDLLQQ-QK 706
Cdd:PRK15079 193 DVSIQAQVVNLLQQlQR 209
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1331-1556 |
1.12e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 58.08 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1331 IKKSPLVVKELSKVYKEKVPLlAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKG--------FNI 1402
Cdd:PRK13632 3 NKSVMIKVENVSFSYPNSENN-ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGitiskenlKEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1403 RTDMAKV-----QQWIGYCPEFD---ALLNFMTGREmlVMHARIRgipecHIKTCVDMilENLLmcvyaDKLVKTYSDGN 1474
Cdd:PRK13632 82 RKKIGIIfqnpdNQFIGATVEDDiafGLENKKVPPK--KMKDIID-----DLAKKVGM--EDYL-----DKEPQNLSGGQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1475 KRVLSTAIALLGEPTVILLDEpSTGM-DPVARRLVWDAVGRVRESG-KTIVITSHSMEECeALCTRLAIMVQGQFKCLGS 1552
Cdd:PRK13632 148 KQRVAIASVLALNPEIIIFDE-STSMlDPKGKREIKKIMVDLRKTRkKTLISITHDMDEA-ILADKVIVFSEGKLIAQGK 225
|
....
gi 1958656855 1553 PQHL 1556
Cdd:PRK13632 226 PKEI 229
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
1357-1527 |
1.22e-08 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 56.73 E-value: 1.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1357 VSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI---RTDMAKVQQWIGYCPEFDALLnfmTGREMLV 1433
Cdd:cd03231 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLdfqRDSIARGLLYLGHAPGIKTTL---SVLENLR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1434 MHARIrgipecHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVG 1513
Cdd:cd03231 96 FWHAD------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMA 169
|
170
....*....|....
gi 1958656855 1514 RVRESGKTIVITSH 1527
Cdd:cd03231 170 GHCARGGMVVLTTH 183
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
1336-1527 |
1.47e-08 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 55.15 E-value: 1.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKvPLLavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDaFVKGFNIRtdmakvqqwIGY 1415
Cdd:cd03221 1 IELENLSKTYGGK-LLL--KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTWGSTVK---------IGY 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 cpeFDALlnfmtgremlvmharirgipechiktcvdmilenllmcvyadklvktySDGNKRVLSTAIALLGEPTVILLDE 1495
Cdd:cd03221 68 ---FEQL------------------------------------------------SGGEKMRLALAKLLLENPNLLLLDE 96
|
170 180 190
....*....|....*....|....*....|..
gi 1958656855 1496 PSTGMDPVARRLVWDAvgrVRESGKTIVITSH 1527
Cdd:cd03221 97 PTNHLDLESIEALEEA---LKEYPGTVILVSH 125
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
525-735 |
1.55e-08 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 58.28 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLtglippskghayihgCEISKDMVRI----- 599
Cdd:PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAI---------------CGVTKDNWRVtadrm 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 600 ---------------RKNVGwcpqHD---ILFDNFTVTDHLYFYG-QL---------KGLSHQDCH---EKIEEMLHTLG 648
Cdd:PRK15093 69 rfddidllrlsprerRKLVG----HNvsmIFQEPQSCLDPSERVGrQLmqnipgwtyKGRWWQRFGwrkRRAIELLHRVG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 649 LEDKRNSRSKF---LSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADL 723
Cdd:PRK15093 145 IKDHKDAMRSFpyeLTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRlnQNNNTTILLISHDLQMLSQ 224
|
250
....*....|..
gi 1958656855 724 LGDRIAILAKGE 735
Cdd:PRK15093 225 WADKINVLYCGQ 236
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
547-780 |
1.64e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 59.99 E-value: 1.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 547 LSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNVGWCPQHDILFDNfTVTDHLYFY 625
Cdd:PLN03232 1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKfGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPF 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 626 GQlkglsHQDCheKIEEMLHTLGLEDKRnSRSKF------------LSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSS 693
Cdd:PLN03232 1334 SE-----HNDA--DLWEALERAHIKDVI-DRNPFgldaevseggenFSVGQRQLLSLARALLRRSKILVLDEATASVDVR 1405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 694 SRRAIWDLLQQQKGDRTVLLTTHFMDEAdLLGDRIAILAKGELQCCGTPSFLKQKYGAGYYMTIIKTPLCDTEKLAKVIY 773
Cdd:PLN03232 1406 TDSLIQRTIREEFKSCTMLVIAHRLNTI-IDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPANAQYLSNLVF 1484
|
....*..
gi 1958656855 774 HHIPNAI 780
Cdd:PLN03232 1485 ERRENGM 1491
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1336-1546 |
1.89e-08 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 58.88 E-value: 1.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKekvPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLT-REQPiTSGDAFVKG--FNIRTDMAKVQQW 1412
Cdd:COG3845 6 LELRGITKRFG---GVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYgLYQP-DSGEILIDGkpVRIRSPRDAIALG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1413 IGYC-------PEFDALLNFMTGRE--------MLVMHARIRGIpechiktcvdmiLENLLMCVYADKLVKTYSDGNK-R 1476
Cdd:COG3845 82 IGMVhqhfmlvPNLTVAENIVLGLEptkggrldRKAARARIREL------------SERYGLDVDPDAKVEDLSVGEQqR 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 1477 VlstAI--ALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:COG3845 150 V---EIlkALYRGARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFITHKLREVMAIADRVTVLRRGK 218
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
1369-1527 |
2.12e-08 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 59.47 E-value: 2.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1369 LLGLNGAGKTSIFNMLTREQP--ITSGDAFVKGFNIRTD-MAKVQqwiGYCPEFDALLNFMTGREMLVMHARIRgIPECH 1445
Cdd:PLN03140 911 LMGVSGAGKTTLMDVLAGRKTggYIEGDIRISGFPKKQEtFARIS---GYCEQNDIHSPQVTVRESLIYSAFLR-LPKEV 986
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1446 IK----TCVDMILE-----NLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVR 1516
Cdd:PLN03140 987 SKeekmMFVDEVMElveldNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1066
|
170
....*....|.
gi 1958656855 1517 ESGKTIVITSH 1527
Cdd:PLN03140 1067 DTGRTVVCTIH 1077
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1353-1546 |
2.20e-08 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 58.68 E-value: 2.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1353 AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGD-------AFVKGFNIRTDMAK----VQQWIGYCPEFDA 1421
Cdd:TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDgeiywsgSPLKASNIRDTERAgiviIHQELTLVPELSV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1422 LLNFMTGREmlVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMD 1501
Cdd:TIGR02633 96 AENIFLGNE--ITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1958656855 1502 PVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:TIGR02633 174 EKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1333-1554 |
2.31e-08 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 58.03 E-value: 2.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1333 KSPLV-VKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTR-EQPiTSGDAFVKGFNIrTDMAKVQ 1410
Cdd:PRK09452 11 LSPLVeLRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGfETP-DSGRIMLDGQDI-THVPAEN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1411 QWIGYCPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVdmiLENLLMcV----YADKLVKTYSDGNKRVLSTAIALLG 1486
Cdd:PRK09452 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRV---MEALRM-VqleeFAQRKPHQLSGGQQQRVAIARAVVN 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 1487 EPTVILLDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1554
Cdd:PRK09452 162 KPKVLLLDESLSALDYKLRKQMQNELKALqRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPR 230
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
525-734 |
2.34e-08 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 58.95 E-value: 2.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKT-TVCSVLTGL-IPPS---------KGHAYIHGCEis 593
Cdd:PRK15134 6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLpSPPVvypsgdirfHGESLLHASE-- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 594 KDMVRIRKN----------VGWCPQHdilfdnfTVTDHLYFYGQL-KGLSHQDCHEKIEEMLHTLGLEDKRNSRSKF--- 659
Cdd:PRK15134 84 QTLRGVRGNkiamifqepmVSLNPLH-------TLEKQLYEVLSLhRGMRREAARGEILNCLDRVGIRQAAKRLTDYphq 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 660 LSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHFMDEADLLGDRIAILAKG 734
Cdd:PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRelQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
553-731 |
2.46e-08 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 58.67 E-value: 2.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 553 KGQITVLLGHNGAGKTTVCSVLTGLIPPSKGhayihgceiskdmvRIRKNVGWcpqhDILFDNFTVTD-HLYFYG----- 626
Cdd:PRK13409 98 EGKVTGILGPNGIGKTTAVKILSGELIPNLG--------------DYEEEPSW----DEVLKRFRGTElQNYFKKlynge 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 627 ---------------QLKG-----LSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEP 686
Cdd:PRK13409 160 ikvvhkpqyvdlipkVFKGkvrelLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEP 239
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 687 TSGMDSSSR----RAIWDLLQqqkgDRTVLLTTHfmDEA--DLLGDRIAIL 731
Cdd:PRK13409 240 TSYLDIRQRlnvaRLIRELAE----GKYVLVVEH--DLAvlDYLADNVHIA 284
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
545-716 |
2.46e-08 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 58.68 E-value: 2.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 545 KDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKdmVR---IRKNVGWCPQHDILFDnftvtDH 621
Cdd:COG5265 375 KGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRD--VTqasLRAAIGIVPQDTVLFN-----DT 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 622 LYF---YGQLkGLSHQDCHE-----KIEEMLHTL--GLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMD 691
Cdd:COG5265 448 IAYniaYGRP-DASEEEVEAaaraaQIHDFIESLpdGYDTRVGERGLKLSGGEKQRVAIARTLLKNPPILIFDEATSALD 526
|
170 180
....*....|....*....|....*
gi 1958656855 692 SSSRRAIWDLLQQQKGDRTVLLTTH 716
Cdd:COG5265 527 SRTERAIQAALREVARGRTTLVIAH 551
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
506-716 |
2.71e-08 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 59.27 E-value: 2.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 506 EKTSKGDFLQDepaghINAIEIQHLyKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHA 585
Cdd:PTZ00265 369 ENNDDGKKLKD-----IKKIQFKNV-RFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 586 YIHGCEISKD--MVRIRKNVGWCPQHDILFDNF---TVTDHLYFYGQLKGLSHQ--------------------DCHEKI 640
Cdd:PTZ00265 443 IINDSHNLKDinLKWWRSKIGVVSQDPLLFSNSiknNIKYSLYSLKDLEALSNYynedgndsqenknkrnscraKCAGDL 522
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 641 EEMLHTL----------------------------------GLEDKRN----SRSKFLSGGIKRKLAIGIALIAGSKVLI 682
Cdd:PTZ00265 523 NDMSNTTdsneliemrknyqtikdsevvdvskkvlihdfvsALPDKYEtlvgSNASKLSGGQKQRISIARAIIRNPKILI 602
|
250 260 270
....*....|....*....|....*....|....*.
gi 1958656855 683 LDEPTSGMDSSSRRAIWDLLQQQKG--DRTVLLTTH 716
Cdd:PTZ00265 603 LDEATSSLDNKSEYLVQKTINNLKGneNRITIIIAH 638
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
1357-1545 |
3.40e-08 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 56.18 E-value: 3.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1357 VSFVVKEKECFGLLGLNGAGKTS---IFNMLtrEQPiTSGDAFVKG--FNIRT-----DMAKVQQWIGYCPEFDALLNFM 1426
Cdd:PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSllrVLNLL--EMP-RSGTLNIAGnhFDFSKtpsdkAIRELRRNVGMVFQQYNLWPHL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1427 TGREMLV-MHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVAR 1505
Cdd:PRK11124 98 TVQQNLIeAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEIT 177
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958656855 1506 RLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQG 1545
Cdd:PRK11124 178 AQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENG 217
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1352-1567 |
3.48e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 56.68 E-value: 3.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1352 LAVNKVSFVVKEKECFGLLGLNGAGKTSIFN-MLTREQPiTSGDAFvkgFN-----------IRTDMAKV-----QQWIG 1414
Cdd:PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKlMIGIEKV-KSGEIF---YNnqaitddnfekLRKHIGIVfqnpdNQFVG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1415 YCPEFD---ALLNFMTGREMlvMHARirgipechiktcVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVI 1491
Cdd:PRK13648 99 SIVKYDvafGLENHAVPYDE--MHRR------------VSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVI 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 1492 LLDEPSTGMDPVARRLVWDAVGRVRESgKTIVITSHSMEECEAL-CTRLAIMVQGQFKCLGSPQHLksrFGSGYSLQ 1567
Cdd:PRK13648 165 ILDEATSMLDPDARQNLLDLVRKVKSE-HNITIISITHDLSEAMeADHVIVMNKGTVYKEGTPTEI---FDHAEELT 237
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
543-734 |
3.49e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 58.20 E-value: 3.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKD------------MVRIRKNVGWCPQHD 610
Cdd:PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHnaneainhgfalVTEERRSTGIYAYLD 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 611 ILFdNFTVTDHLYFYGQLKGLSHQ----DCHEKIEEM-LHTLGLEDKRNSrskfLSGGIKRKLAIGIALIAGSKVLILDE 685
Cdd:PRK10982 343 IGF-NSLISNIRNYKNKVGLLDNSrmksDTQWVIDSMrVKTPGHRTQIGS----LSGGNQQKVIIGRWLLTQPEILMLDE 417
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 686 PTSGMDSSSRRAIWDLLQQ-QKGDRTVLLTTHFMDEadLLG--DRIAILAKG 734
Cdd:PRK10982 418 PTRGIDVGAKFEIYQLIAElAKKDKGIIIISSEMPE--LLGitDRILVMSNG 467
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
1336-1556 |
3.57e-08 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 56.52 E-value: 3.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVPLlavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTdmakVQQWIGY 1415
Cdd:PRK10619 6 LNVIDLHKRYGEHEVL---KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINL----VRDKDGQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 CPEFDA------------------LLNFMTGREMlVMHARIR--GIPECHIKTCVDMILENLLMCVYA-DKLVKTYSDGN 1474
Cdd:PRK10619 79 LKVADKnqlrllrtrltmvfqhfnLWSHMTVLEN-VMEAPIQvlGLSKQEARERAVKYLAKVGIDERAqGKYPVHLSGGQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1475 KRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1554
Cdd:PRK10619 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPE 237
|
..
gi 1958656855 1555 HL 1556
Cdd:PRK10619 238 QL 239
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
525-732 |
3.74e-08 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 58.02 E-value: 3.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFytgrSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIhgceisKDMVRIrknvG 604
Cdd:TIGR03719 323 IEAENLTKAF----GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI------GETVKL----A 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 WCPQ-HDILFDNFTVtdhlyfygqlkglshqdcHEKIEEMLHTLGLEDKR-NSR---SKF-------------LSGGIKR 666
Cdd:TIGR03719 389 YVDQsRDALDPNKTV------------------WEEISGGLDIIKLGKREiPSRayvGRFnfkgsdqqkkvgqLSGGERN 450
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 667 KLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGdrTVLLTTH---FMdeadllgDRIA--ILA 732
Cdd:TIGR03719 451 RVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLNFAG--CAVVISHdrwFL-------DRIAthILA 512
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
544-716 |
4.05e-08 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 57.89 E-value: 4.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGhayihgceiskdmvRIRknvgwCPQH-DILFdnftVTDHL 622
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSG--------------RIA-----RPAGaRVLF----LPQRP 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 623 YF-YGQLKGL--------SHQDchEKIEEMLHTLGLE------DKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPT 687
Cdd:COG4178 436 YLpLGTLREAllypataeAFSD--AELREALEAVGLGhlaerlDEEADWDQVLSLGEQQRLAFARLLLHKPDWLFLDEAT 513
|
170 180
....*....|....*....|....*....
gi 1958656855 688 SGMDSSSRRAIWDLLQQQKGDRTVLLTTH 716
Cdd:COG4178 514 SALDEENEAALYQLLREELPGTTVISVGH 542
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
554-731 |
4.05e-08 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 56.22 E-value: 4.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 554 GQITVLLGHNGAGKTTVCSVLTGLIPPSKGH-----------AYIHGCEISKDMVRIRK---NVGWCPQHdilfdnftvT 619
Cdd:cd03236 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKfddppdwdeilDEFRGSELQNYFTKLLEgdvKVIVKPQY---------V 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 620 DHLYfyGQLKG-----LSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSS 694
Cdd:cd03236 97 DLIP--KAVKGkvgelLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQ 174
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958656855 695 R----RAIWDLLQQqkgDRTVLLTTHFMDEADLLGDRIAIL 731
Cdd:cd03236 175 RlnaaRLIRELAED---DNYVLVVEHDLAVLDYLSDYIHCL 212
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
1368-1556 |
4.44e-08 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 56.33 E-value: 4.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1368 GLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKV-QQWIGYCPEFDALLNFMTGREMLVM-----H---ARI 1438
Cdd:PRK10575 41 GLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAfARKVAYLPQQLPAAEGMTVRELVAIgrypwHgalGRF 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1439 RGIPECHIKTCVDMI-LENLlmcvyADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRV-R 1516
Cdd:PRK10575 121 GAADREKVEEAISLVgLKPL-----AHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLsQ 195
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958656855 1517 ESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:PRK10575 196 ERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
523-737 |
4.64e-08 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 56.36 E-value: 4.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 523 NAIEIQHLYKVFYtgrskciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGceiskDMVRIRKN 602
Cdd:PRK13546 26 DALIPKHKNKTFF-------ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-----EVSVIAIS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 603 VGwcpqhdiLFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLI 682
Cdd:PRK13546 94 AG-------LSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILV 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 683 LDEPTSGMDSSSRRAIWDLLQQQK-GDRTVLLTTHFMDEADLLGDRIAILAKGELQ 737
Cdd:PRK13546 167 IDEALSVGDQTFAQKCLDKIYEFKeQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLK 222
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
1332-1553 |
5.52e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 56.35 E-value: 5.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1332 KKSPLVVKELSKVYKE-KVPllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNM-----LTREQPITSgdAFVKG------ 1399
Cdd:PRK13640 2 KDNIVEFKHVSFTYPDsKKP--ALNDISFSIPRGSWTALIGHNGSGKSTISKLingllLPDDNPNSK--ITVDGitltak 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1400 --FNIRTDMAKV-----QQWIGYCPEFDALLnfmtGREMlvmhariRGIPECHIKTCVDMILENLLMCVYADKLVKTYSD 1472
Cdd:PRK13640 78 tvWDIREKVGIVfqnpdNQFVGATVGDDVAF----GLEN-------RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSG 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1473 GNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEECEaLCTRLAIMVQGQFKCLG 1551
Cdd:PRK13640 147 GQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLkKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQG 225
|
..
gi 1958656855 1552 SP 1553
Cdd:PRK13640 226 SP 227
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
1357-1527 |
5.96e-08 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 54.67 E-value: 5.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1357 VSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQQWIGYCPEFDALLNFMTGREMLVMHA 1436
Cdd:TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYLGHLPGLKPELSALENLHFWA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1437 RIRGiPEchiktcvDMILENLLMCV----YADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAV 1512
Cdd:TIGR01189 99 AIHG-GA-------QRTIEDALAAVgltgFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKAGVALLAGLL 170
|
170
....*....|....*
gi 1958656855 1513 GRVRESGKTIVITSH 1527
Cdd:TIGR01189 171 RAHLARGGIVLLTTH 185
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1338-1530 |
6.21e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 55.90 E-value: 6.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1338 VKELSKVYKEKVPllAVNKVSFVVKEKECFGLLGLNGAGKTSI---FNMLTREQpitSGDAFVKGFNIRtdmAKVQQWI- 1413
Cdd:PRK13647 7 VEDLHFRYKDGTK--ALKGLSLSIPEGSKTALLGPNGAGKSTLllhLNGIYLPQ---RGRVKVMGREVN---AENEKWVr 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1414 ---GYC-PEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPT 1489
Cdd:PRK13647 79 skvGLVfQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD 158
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958656855 1490 VILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSME 1530
Cdd:PRK13647 159 VIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
542-735 |
6.39e-08 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 57.41 E-value: 6.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 542 IAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPpSKGHAYIHGCEIS----KDMVRIRK---------NVGWCPQ 608
Cdd:PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHnlnrRQLLPVRHriqvvfqdpNSSLNPR 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 609 HD---ILFDNFTVtdhlyfygQLKGLSHQDCHEKIEEMLHTLGLEDKRNSR--SKFlSGGIKRKLAIGIALIAGSKVLIL 683
Cdd:PRK15134 379 LNvlqIIEEGLRV--------HQPTLSAAQREQQVIAVMEEVGLDPETRHRypAEF-SGGQRQRIAIARALILKPSLIIL 449
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 684 DEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLLTTHFMDEADLLGDRIAILAKGE 735
Cdd:PRK15134 450 DEPTSSLDKTVQAQILALLKslQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
1463-1588 |
7.54e-08 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 57.44 E-value: 7.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1463 ADKLvktySDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRES--GKT-IVITSHsMEECEAlCTRL 1539
Cdd:NF033858 134 AGKL----SGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRRQFWELIDRIRAErpGMSvLVATAY-MEEAER-FDWL 207
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1958656855 1540 AIMVQGQFKCLGSPQHLKSRFGSgyslqakvrrkwqqQMLEEfkAFVDL 1588
Cdd:NF033858 208 VAMDAGRVLATGTPAELLARTGA--------------DTLEA--AFIAL 240
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
525-716 |
7.83e-08 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 53.70 E-value: 7.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLykVFYTGRSKCIaVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEiskdmvrirknvg 604
Cdd:cd03223 1 IELENL--SLATPDGRVL-LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGE------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 605 wcpqhDILFdnftVTDHLYFY-GQLKglshqdchekiEEMLHTLGLEdkrnsrskfLSGGIKRKLAIGIALIAGSKVLIL 683
Cdd:cd03223 65 -----DLLF----LPQRPYLPlGTLR-----------EQLIYPWDDV---------LSGGEQQRLAFARLLLHKPKFVFL 115
|
170 180 190
....*....|....*....|....*....|....*....
gi 1958656855 684 DEPTSGMDSSSRRAIWDLLQQQK------GDRTVLLTTH 716
Cdd:cd03223 116 DEATSALDEESEDRLYQLLKELGitvisvGHRPSLWKFH 154
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
524-742 |
9.72e-08 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 56.01 E-value: 9.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 524 AIEIQHLYKVfYTGRSKciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS----KD---- 595
Cdd:PRK11650 3 GLKLQAVRKS-YDGKTQ--VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNelepADrdia 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 596 MVrirknvgwcpqhdilFDNF------TVTDHLYfYGqLK--GLSHQDCHEKIEEMLHTLGLED--KRNSRSkfLSGGIK 665
Cdd:PRK11650 80 MV---------------FQNYalyphmSVRENMA-YG-LKirGMPKAEIEERVAEAARILELEPllDRKPRE--LSGGQR 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 666 RKLAIGIALIAGSKVLILDEPTSGMDSSSR---RAIWDLLQQQKGdRTVLLTTHFMDEADLLGDRIAILAKGELQCCGTP 742
Cdd:PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRvqmRLEIQRLHRRLK-TTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTP 219
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
547-751 |
1.06e-07 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 54.94 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 547 LSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPpSKGHAYIHGCEISK----DMVRIRknvGWCPQHDILFDNFTVTDHL 622
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAwsaaELARHR---AYLSQQQTPPFAMPVFQYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 623 YFYgqLKGLSHQDCHEK-IEEMLHTLGLEDKRNSRSKFLSGG-IKR-KLA-----IGIALIAGSKVLILDEPTSGMDSSS 694
Cdd:PRK03695 91 TLH--QPDKTRTEAVASaLNEVAEALGLDDKLGRSVNQLSGGeWQRvRLAavvlqVWPDINPAGQLLLLDEPMNSLDVAQ 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 695 RRAIWDLLQQ--QKGdRTVLLTTHfmdeaDL-----LGDRIAILAKGELQCCG------TPSFLKQKYGA 751
Cdd:PRK03695 169 QAALDRLLSElcQQG-IAVVMSSH-----DLnhtlrHADRVWLLKQGKLLASGrrdevlTPENLAQVFGV 232
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
1336-1502 |
1.14e-07 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 54.42 E-value: 1.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVPLlAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRT-DMAKVQQWIG 1414
Cdd:cd03244 3 IEFKNVSLRYRPNLPP-VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKiGLHDLRSRIS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1415 YCPEfDALLNFMTGREML----------VMHArirgIPECHIKTCVDMILENLLMCVYADKlvKTYSDGNKRVLSTAIAL 1484
Cdd:cd03244 82 IIPQ-DPVLFSGTIRSNLdpfgeysdeeLWQA----LERVGLKEFVESLPGGLDTVVEEGG--ENLSVGQRQLLCLARAL 154
|
170
....*....|....*...
gi 1958656855 1485 LGEPTVILLDEPSTGMDP 1502
Cdd:cd03244 155 LRKSKILVLDEATASVDP 172
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
1339-1553 |
1.40e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 55.12 E-value: 1.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1339 KELSKVYKEKVPLL--AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLT-----REQPITSGDAFVKGFNIRTDMAKVQQ 1411
Cdd:PRK13643 5 EKVNYTYQPNSPFAsrALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNgllqpTEGKVTVGDIVVSSTSKQKEIKPVRK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1412 WIGYCPEF-DALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENL-LMCVYADKLVKTYSDGNKRVLSTAIALLGEPT 1489
Cdd:PRK13643 85 KVGVVFQFpESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVgLADEFWEKSPFELSGGQMRRVAIAGILAMEPE 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 1490 VILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSP 1553
Cdd:PRK13643 165 VLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
1336-1527 |
1.59e-07 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 53.68 E-value: 1.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSkVYKEKVPLLavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLT-REQP-ITSGDAFVKGFNIrTDMAkvqqwi 1413
Cdd:cd03217 1 LEIKDLH-VSVGGKEIL--KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMgHPKYeVTEGEILFKGEDI-TDLP------ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1414 gycPEFDALLN-FMtgreMLVMHARIRGIPechiktcvdmiLENLLMCVYadklvKTYSDGNKRVLSTAIALLGEPTVIL 1492
Cdd:cd03217 71 ---PEERARLGiFL----AFQYPPEIPGVK-----------NADFLRYVN-----EGFSGGEKKRNEILQLLLLEPDLAI 127
|
170 180 190
....*....|....*....|....*....|....*
gi 1958656855 1493 LDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSH 1527
Cdd:cd03217 128 LDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
543-736 |
1.75e-07 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 56.02 E-value: 1.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI----SKDMVRIRKNVGWC---------PQH 609
Cdd:PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIdtlsPGKLQALRRDIQFIfqdpyasldPRQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 610 DIlfdNFTVTDHLYFYGQLKGlshQDCHEKIEEMLHTLGLEDKRNSRSKF-LSGGIKRKLAIGIALIAGSKVLILDEPTS 688
Cdd:PRK10261 419 TV---GDSIMEPLRVHGLLPG---KAAAARVAWLLERVGLLPEHAWRYPHeFSGGQRQRICIARALALNPKVIIADEAVS 492
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958656855 689 GMDSSSRRAIWDLLQQQKGDRTV--LLTTHFMDEADLLGDRIAILAKGEL 736
Cdd:PRK10261 493 ALDVSIRGQIINLLLDLQRDFGIayLFISHDMAVVERISHRVAVMYLGQI 542
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
1471-1556 |
1.81e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 54.79 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1471 SDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVR-ESGKTIVITSHSMEECEALCTRLAIMVQGQFKC 1549
Cdd:PRK13646 147 SGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQtDENKTIILVSHDMNEVARYADEVIVMKEGSIVS 226
|
....*..
gi 1958656855 1550 LGSPQHL 1556
Cdd:PRK13646 227 QTSPKEL 233
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
544-687 |
1.82e-07 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 55.78 E-value: 1.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLS---MNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVGWCPQHDIL--FDNFTV 618
Cdd:PRK10762 17 VKALSgaaLNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELnlIPQLTI 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 619 TDHLY----FYGQLKGLSHQDCHEKIEEMLHTLGLedKRNSRSKF--LSGGIKRKLAIGIALIAGSKVLILDEPT 687
Cdd:PRK10762 97 AENIFlgreFVNRFGRIDWKKMYAEADKLLARLNL--RFSSDKLVgeLSIGEQQMVEIAKVLSFESKVIIMDEPT 169
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
1345-1565 |
2.03e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 56.14 E-value: 2.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1345 YKEKVPLLaVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIR----TDMAKVQQWIGYCPE-F 1419
Cdd:PLN03232 1244 YRPGLPPV-LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAkfglTDLRRVLSIIPQSPVlF 1322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1420 DALLNFMTGREMLVMHARI-RGIPECHIKTCVDMILENLLMCVYADKlvKTYSDGNKRVLSTAIALLGEPTVILLDEPST 1498
Cdd:PLN03232 1323 SGTVRFNIDPFSEHNDADLwEALERAHIKDVIDRNPFGLDAEVSEGG--ENFSVGQRQLLSLARALLRRSKILVLDEATA 1400
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 1499 GMDPVARRLVWDAvgrVRESGK--TIVITSHSMEECeALCTRLAIMVQGQFKCLGSPQHLKSRFGSGYS 1565
Cdd:PLN03232 1401 SVDVRTDSLIQRT---IREEFKscTMLVIAHRLNTI-IDCDKILVLSSGQVLEYDSPQELLSRDTSAFF 1465
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
559-753 |
2.30e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 56.28 E-value: 2.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 559 LLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNVGWCPQHDILFDNfTVTDHLYFYGQlkglsHQDCh 637
Cdd:PLN03130 1270 IVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKfGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNE-----HNDA- 1342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 638 eKIEEMLHTLGLED--KRNSR---------SKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQK 706
Cdd:PLN03130 1343 -DLWESLERAHLKDviRRNSLgldaevseaGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 1421
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1958656855 707 GDRTVLLTTHFMDEAdLLGDRIAILAKGELQCCGTPSFLKQKYGAGY 753
Cdd:PLN03130 1422 KSCTMLIIAHRLNTI-IDCDRILVLDAGRVVEFDTPENLLSNEGSAF 1467
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
1353-1524 |
2.67e-07 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 53.39 E-value: 2.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1353 AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRT-DMAKVQQWIGYCPEfDALL-------N 1424
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDyTLASLRRQIGLVSQ-DVFLfndtvaeN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1425 FMTGREMlVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKtYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVA 1504
Cdd:cd03251 96 IAYGRPG-ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTES 173
|
170 180
....*....|....*....|
gi 1958656855 1505 RRLVWDAVGRVRESGKTIVI 1524
Cdd:cd03251 174 ERLVQAALERLMKNRTTFVI 193
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
525-749 |
2.89e-07 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 55.19 E-value: 2.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFYTGRskciAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGL--IPPSKGHAYIH-------------- 588
Cdd:TIGR03269 1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIIYHvalcekcgyverps 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 589 ---------GCEISKDMV-----------RIRKNVGWCPQHDI-LFDNFTVTDHLYFYGQLKGLSHQDCHEKIEEMLHTL 647
Cdd:TIGR03269 77 kvgepcpvcGGTLEPEEVdfwnlsdklrrRIRKRIAIMLQRTFaLYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 648 GLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFMDEADLLG 725
Cdd:TIGR03269 157 QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEavKASGISMVLTSHWPEVIEDLS 236
|
250 260
....*....|....*....|....
gi 1958656855 726 DRIAILAKGELQCCGTPSFLKQKY 749
Cdd:TIGR03269 237 DKAIWLENGEIKEEGTPDEVVAVF 260
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
547-716 |
3.07e-07 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 52.93 E-value: 3.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 547 LSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK-DMVRIRKNVGWCPQhdiLFDNFTVTDHLYFY 625
Cdd:PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRgDRSRFMAYLGHLPG---LKADLSTLENLHFL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 626 GQLKGlshqdCHEK--IEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSS----RRAIW 699
Cdd:PRK13543 107 CGLHG-----RRAKqmPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGitlvNRMIS 181
|
170
....*....|....*..
gi 1958656855 700 DLLQQQKGdrtVLLTTH 716
Cdd:PRK13543 182 AHLRGGGA---ALVTTH 195
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
1345-1527 |
4.53e-07 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 54.79 E-value: 4.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1345 YKEKVPLLavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRT-DMAKVQQWIGYCPEfDALL 1423
Cdd:COG1132 349 YPGDRPVL--KDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDlTLESLRRQIGVVPQ-DTFL 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1424 nF-MTgremlvmharirgipechiktcvdmILENLLM---------------CVYADKLVKTYSDG-NKRV------LST 1480
Cdd:COG1132 426 -FsGT-------------------------IRENIRYgrpdatdeeveeaakAAQAHEFIEALPDGyDTVVgergvnLSG 479
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 1481 ------AIA--LLGEPTVILLDEPSTGMDPVARRLVWDAVGRVREsGKTIVITSH 1527
Cdd:COG1132 480 gqrqriAIAraLLKDPPILILDEATSALDTETEALIQEALERLMK-GRTTIVIAH 533
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
1338-1530 |
4.59e-07 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 53.55 E-value: 4.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1338 VKELSKVYKEKVP--LLAVNKVSFVVKEKECFGLLGLNGAGKTSI---FNML----------------TREQPITSgDAF 1396
Cdd:PRK13651 5 VKNIVKIFNKKLPteLKALDNVSVEINQGEFIAIIGQTGSGKTTFiehLNALllpdtgtiewifkdekNKKKTKEK-EKV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1397 VKGFNI-RTDMAKVQQ------WIGYCPEFDALLNF-MTGREMLVMHARIRGIPECHIKTCVDMILENL-LMCVYADKLV 1467
Cdd:PRK13651 84 LEKLVIqKTRFKKIKKikeirrRVGVVFQFAEYQLFeQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVgLDESYLQRSP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 1468 KTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSME 1530
Cdd:PRK13651 164 FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD 226
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
1336-1553 |
5.24e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 53.47 E-value: 5.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVPL--LAVNKVSFVVKEKECFGLLGLNGAGKTSIFNmLTREQPIT-SGDAFVKGFNIRTDMAKVQQW 1412
Cdd:PRK13645 7 IILDNVSYTYAKKTPFefKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQ-LTNGLIISeTGQTIVGDYAIPANLKKIKEV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1413 ------IGYCPEFDALLNFMTGREMLVMHARI----------RGIPEChiktcVDMILenlLMCVYADKLVKTYSDGNKR 1476
Cdd:PRK13645 86 krlrkeIGLVFQFPEYQLFQETIEKDIAFGPVnlgenkqeayKKVPEL-----LKLVQ---LPEDYVKRSPFELSGGQKR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 1477 VLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSP 1553
Cdd:PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLnKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
559-691 |
5.30e-07 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 54.57 E-value: 5.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 559 LLGHNGAGKTTVCSVLTGLIPPSKGHAyihgcEISKDMV--RIRKNvgwcPQHDI---LFDNFT-----VTDHLYFYGQL 628
Cdd:PRK11147 34 LVGRNGAGKSTLMKILNGEVLLDDGRI-----IYEQDLIvaRLQQD----PPRNVegtVYDFVAegieeQAEYLKRYHDI 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 629 KGLSHQDCHEK-----------------------IEEMLHTLGLE-DKRNSRskfLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:PRK11147 105 SHLVETDPSEKnlnelaklqeqldhhnlwqlenrINEVLAQLGLDpDAALSS---LSGGWLRKAALGRALVSNPDVLLLD 181
|
....*..
gi 1958656855 685 EPTSGMD 691
Cdd:PRK11147 182 EPTNHLD 188
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
1338-1553 |
5.63e-07 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 52.03 E-value: 5.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1338 VKELSKVYKEKVPLLAVNkVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRT-DMAKVQQWIGYC 1416
Cdd:cd03369 9 VENLSVRYAPDLPPVLKN-VSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTiPLEDLRSSLTII 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1417 PEfDALLnFMTGremlvmharirgipechIKTCVDMILEnllmcvYADKLVKT----------YSDGNKRVLSTAIALLG 1486
Cdd:cd03369 88 PQ-DPTL-FSGT-----------------IRSNLDPFDE------YSDEEIYGalrvsegglnLSQGQRQLLCLARALLK 142
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 1487 EPTVILLDEPSTGMDPVARRLVWDAVgRVRESGKTIVITSHSMEECeALCTRLAIMVQGQFKCLGSP 1553
Cdd:cd03369 143 RPRVLVLDEATASIDYATDALIQKTI-REEFTNSTILTIAHRLRTI-IDYDKILVMDAGEVKEYDHP 207
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
1339-1554 |
5.77e-07 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 53.21 E-value: 5.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1339 KELSKVYKEKVPL--LAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRT-----DMAKVQQ 1411
Cdd:PRK13649 6 QNVSYTYQAGTPFegRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITStsknkDIKQIRK 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1412 WIGYC---PE---FDALL---------NFMTGREMLVMHARIrgipechiKTCVDMILENLLmcvyaDKLVKTYSDGNKR 1476
Cdd:PRK13649 86 KVGLVfqfPEsqlFEETVlkdvafgpqNFGVSQEEAEALARE--------KLALVGISESLF-----EKNPFELSGGQMR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 1477 VLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1554
Cdd:PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1357-1546 |
5.83e-07 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 54.15 E-value: 5.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1357 VSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKG--FNIRTDMAKVQQWIGYCPE---FDALLNFMTGREM 1431
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGkpIDIRSPRDAIRAGIMLCPEdrkAEGIIPVHSVADN 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1432 LVMHAR---------IRG----------IPECHIKTcvdmilenllmcVYADKLVKTYSDGN--KRVLSTaiaLLGEP-T 1489
Cdd:PRK11288 352 INISARrhhlragclINNrweaenadrfIRSLNIKT------------PSREQLIMNLSGGNqqKAILGR---WLSEDmK 416
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 1490 VILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:PRK11288 417 VILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1336-1547 |
6.43e-07 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 53.88 E-value: 6.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSkvYKEKVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTdmakvqqwigy 1415
Cdd:COG3845 258 LEVENLS--VRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITG----------- 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 cpefdallnfMTGREMLvmHARIRGIPECHIKT-CV-DM-ILENLLMCVY-------------------ADKLVKTY--- 1470
Cdd:COG3845 325 ----------LSPRERR--RLGVAYIPEDRLGRgLVpDMsVAENLILGRYrrppfsrggfldrkairafAEELIEEFdvr 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1471 -----------SDGN--KRVLstAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCT 1537
Cdd:COG3845 393 tpgpdtparslSGGNqqKVIL--ARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLLISEDLDEILALSD 470
|
250
....*....|
gi 1958656855 1538 RLAIMVQGQF 1547
Cdd:COG3845 471 RIAVMYEGRI 480
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1354-1548 |
6.72e-07 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 54.16 E-value: 6.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1354 VNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQP-ITSGDAFVKG--FNIRTDMAKVQQWIGYCPEfD---------- 1420
Cdd:PRK13549 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGkpVKIRNPQQAIAQGIAMVPE-Drkrdgivpvm 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1421 --------ALLNFMTGREML-----VMHARiRGIPECHIKTCVDMI-LENLlmcvyadklvktySDGN--KRVLstAIAL 1484
Cdd:PRK13549 357 gvgknitlAALDRFTGGSRIddaaeLKTIL-ESIQRLKVKTASPELaIARL-------------SGGNqqKAVL--AKCL 420
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 1485 LGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFK 1548
Cdd:PRK13549 421 LLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
1471-1530 |
7.17e-07 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 53.16 E-value: 7.17e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 1471 SDGNKRVLSTAIALL---GEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSME 1530
Cdd:pfam13304 238 SDGTKRLLALLAALLsalPKGGLLLIDEPESGLHPKLLRRLLELLKELSRNGAQLILTTHSPL 300
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
551-728 |
7.64e-07 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 54.02 E-value: 7.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 551 LYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGhayihgcEISKDMvrirkNVGWCPQ---HDIlfdNFTVTDHL----- 622
Cdd:COG1245 363 IREGEVLGIVGPNGIGKTTFAKILAGVLKPDEG-------EVDEDL-----KISYKPQyisPDY---DGTVEEFLrsant 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 623 ------YFYgqlkglshqdchekiEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSR- 695
Cdd:COG1245 428 ddfgssYYK---------------TEIIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRl 492
|
170 180 190
....*....|....*....|....*....|....*.
gi 1958656855 696 ---RAIWDLLQQQKgdRTVLLTTHFMDEADLLGDRI 728
Cdd:COG1245 493 avaKAIRRFAENRG--KTAMVVDHDIYLIDYISDRL 526
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1336-1530 |
8.07e-07 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 52.13 E-value: 8.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKE-KVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKG--FNIRTDMAKVQ-- 1410
Cdd:PRK11629 6 LQCDNLCKRYQEgSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGqpMSKLSSAAKAElr 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1411 -QWIGYCPEFDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPT 1489
Cdd:PRK11629 86 nQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPR 165
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1958656855 1490 VILLDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSME 1530
Cdd:PRK11629 166 LVLADEPTGNLDARNADSIFQLLGELnRLQGTAFLVVTHDLQ 207
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
556-722 |
8.95e-07 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 51.45 E-value: 8.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 556 ITVLLGHNGAGKTTV---CSV-LTGLIPPSKghayiHGCEISKDMVRIRKNVGwcpQHDILFDNftVTDHLY----FYGQ 627
Cdd:cd03240 24 LTLIVGQNGAGKTTIieaLKYaLTGELPPNS-----KGGAHDPKLIREGEVRA---QVKLAFEN--ANGKKYtitrSLAI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 628 LKG--LSHQdchekiEEMLHTLGLEDKRnsrskfLSGGIKRKLAIGIAL-IA---GSK--VLILDEPTSGMDSSSRR-AI 698
Cdd:cd03240 94 LENviFCHQ------GESNWPLLDMRGR------CSGGEKVLASLIIRLaLAetfGSNcgILALDEPTTNLDEENIEeSL 161
|
170 180
....*....|....*....|....*....
gi 1958656855 699 WDLL--QQQKGDRTVLLTTH---FMDEAD 722
Cdd:cd03240 162 AEIIeeRKSQKNFQLIVITHdeeLVDAAD 190
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
1357-1570 |
1.07e-06 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 52.80 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1357 VSFVVKEKECFGLLGLNGAGKTSIFNM---LTREQpitSGDAFVKG---FN--IRTDMAKVQQWIGYCpeF-DALLnF-- 1425
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKTTLLRAiagLERPD---SGRIRLGGevlQDsaRGIFLPPHRRRIGYV--FqEARL-Fph 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1426 MTGREML--VMHARIRGIPECHIKTCVDMI-LENLLmcvyaDKLVKTYSDGNK-RVlstAI--ALLGEPTVILLDEPSTG 1499
Cdd:COG4148 92 LSVRGNLlyGRKRAPRAERRISFDEVVELLgIGHLL-----DRRPATLSGGERqRV---AIgrALLSSPRLLLMDEPLAA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1500 MDPVARRLVWDAVGRVRESGKT-IVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSR---------FGSGYSLQAK 1569
Cdd:COG4148 164 LDLARKAEILPYLERLRDELDIpILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLSRpdllplaggEEAGSVLEAT 243
|
.
gi 1958656855 1570 V 1570
Cdd:COG4148 244 V 244
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
535-716 |
1.09e-06 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 53.88 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 535 YTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKNVGWCPQH----- 609
Cdd:PTZ00265 1175 YISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNvgmkn 1254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 610 -----------------------DILFDNFTVTDH--------LYFYGQLKGLSHQDCHEKIEEMLHTLGLED-KRNSR- 656
Cdd:PTZ00265 1255 vnefsltkeggsgedstvfknsgKILLDGVDICDYnlkdlrnlFSIVSQEPMLFNMSIYENIKFGKEDATREDvKRACKf 1334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 657 ---------------------SKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQ--QQKGDRTVLL 713
Cdd:PTZ00265 1335 aaidefieslpnkydtnvgpyGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVdiKDKADKTIIT 1414
|
...
gi 1958656855 714 TTH 716
Cdd:PTZ00265 1415 IAH 1417
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
1465-1546 |
1.60e-06 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 50.95 E-value: 1.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1465 KLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEECEALCTRLAIMV 1543
Cdd:cd03298 124 RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLhAETKMTVLMVTHQPEDAKRLAQRVVFLD 203
|
...
gi 1958656855 1544 QGQ 1546
Cdd:cd03298 204 NGR 206
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
548-736 |
1.60e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 52.71 E-value: 1.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 548 SMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGhayihgcEISKDMVRIrKNVGWCPQHDILFDNF--TVTDHL--- 622
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSG-------ERQSQFSHI-TRLSFEQLQKLVSDEWqrNNTDMLspg 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 623 -----YFYGQLKGLSHQDcHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRA 697
Cdd:PRK10938 95 eddtgRTTAEIIQDEVKD-PARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQ 173
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958656855 698 IWDLLQQ--QKGDRTVLLTTHFMDEADLLgDRIAILAKGEL 736
Cdd:PRK10938 174 LAELLASlhQSGITLVLVLNRFDEIPDFV-QFAGVLADCTL 213
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1336-1527 |
1.70e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 50.72 E-value: 1.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKvPLLavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQQWIGY 1415
Cdd:PRK13540 2 LDVIELDFDYHDQ-PLL--QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 CPEFDALLNFMTGRE--MLVMH--ARIRGIPEchikTCVDMILENLLmcvyaDKLVKTYSDGNKRVLSTAIALLGEPTVI 1491
Cdd:PRK13540 79 VGHRSGINPYLTLREncLYDIHfsPGAVGITE----LCRLFSLEHLI-----DYPCGLLSSGQKRQVALLRLWMSKAKLW 149
|
170 180 190
....*....|....*....|....*....|....*.
gi 1958656855 1492 LLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSH 1527
Cdd:PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
520-751 |
1.74e-06 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 53.41 E-value: 1.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 520 GHINAIEIQHlyKVFYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGceiskdmvri 599
Cdd:TIGR00957 632 GEGNSITVHN--ATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---------- 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 600 rkNVGWCPQHDILfDNFTVTDHLYFYGQLKGLSHQDCHEKIE-----EMLHTlGLEDKRNSRSKFLSGGIKRKLAIGIAL 674
Cdd:TIGR00957 700 --SVAYVPQQAWI-QNDSLRENILFGKALNEKYYQQVLEACAllpdlEILPS-GDRTEIGEKGVNLSGGQKQRVSLARAV 775
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 675 IAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKG---DRTVLLTTH---FMDEADLlgdrIAILAKGELQCCGTPSFLKQK 748
Cdd:TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGvlkNKTRILVTHgisYLPQVDV----IIVMSGGKISEMGSYQELLQR 851
|
...
gi 1958656855 749 YGA 751
Cdd:TIGR00957 852 DGA 854
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
544-737 |
1.98e-06 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 52.62 E-value: 1.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIP-PSKGHAYIHGCEIS----KDMVRI--------RKNVGWCPQHD 610
Cdd:PRK13549 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGKPVKirnpQQAIAQgiamvpedRKRDGIVPVMG 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 611 ILfDNFT--VTDHLYFYGQLKGLSHQDChekIEEMLHTLgledKRNSRSKF-----LSGGIKRKLAIGIALIAGSKVLIL 683
Cdd:PRK13549 358 VG-KNITlaALDRFTGGSRIDDAAELKT---ILESIQRL----KVKTASPElaiarLSGGNQQKAVLAKCLLLNPKILIL 429
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 684 DEPTSGMDSSSRRAIWDLLQQ--QKGDRTVLLTTHFmdeADLLG--DRIAILAKGELQ 737
Cdd:PRK13549 430 DEPTRGIDVGAKYEIYKLINQlvQQGVAIIVISSEL---PEVLGlsDRVLVMHEGKLK 484
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
534-716 |
2.20e-06 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 52.86 E-value: 2.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 534 FYTGRSKCIaVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIppskghayihgcEISKDMVRIRKNVGWCPQHDILF 613
Cdd:PTZ00243 667 FFELEPKVL-LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF------------EISEGRVWAERSIAYVPQQAWIM 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 614 dNFTVTDHLYFYGQLKGLSHQDCHE--KIEEMLHTL--GLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSG 689
Cdd:PTZ00243 734 -NATVRGNILFFDEEDAARLADAVRvsQLEADLAQLggGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSA 812
|
170 180
....*....|....*....|....*...
gi 1958656855 690 MDSS-SRRAIWDLLQQQKGDRTVLLTTH 716
Cdd:PTZ00243 813 LDAHvGERVVEECFLGALAGKTRVLATH 840
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
544-716 |
2.32e-06 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 51.39 E-value: 2.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPpSKGHAYIHGCEISK-DMVRIRKNVGWCPQHDILFDNfTVTDHL 622
Cdd:cd03289 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSvPLQKWRKAFGVIPQKVFIFSG-TFRKNL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 623 YFYGQlkglsHQDchEKIEEMLHTLGLE---DKRNSRSKF--------LSGGIKRKLAIGIALIAGSKVLILDEPTSGMD 691
Cdd:cd03289 98 DPYGK-----WSD--EEIWKVAEEVGLKsviEQFPGQLDFvlvdggcvLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170
|
170 180
....*....|....*....|....*
gi 1958656855 692 SSSRRAIWDLLQQQKGDRTVLLTTH 716
Cdd:cd03289 171 PITYQVIRKTLKQAFADCTVILSEH 195
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
1354-1569 |
2.73e-06 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 50.86 E-value: 2.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1354 VNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSG-----DAFVKG---FNIRtDMAKVQQWIGYCPE------F 1419
Cdd:PRK14271 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGrsiFNYR-DVLEFRRRVGMLFQrpnpfpM 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1420 DALLNFMTG--REMLVMHARIRGIPECHIKtcvdmilENLLMCVYADKLVKT---YSDGNKRVLSTAIALLGEPTVILLD 1494
Cdd:PRK14271 116 SIMDNVLAGvrAHKLVPRKEFRGVAQARLT-------EVGLWDAVKDRLSDSpfrLSGGQQQLLCLARTLAVNPEVLLLD 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1495 EPSTGMDPVARRLVWDAVgRVRESGKTIVITSHSMEECEALCTRLAIMVQGQF-------KCLGSPQHLKS-RFGSGYSL 1566
Cdd:PRK14271 189 EPTSALDPTTTEKIEEFI-RSLADRLTVIIVTHNLAQAARISDRAALFFDGRLveegpteQLFSSPKHAETaRYVAGLSG 267
|
...
gi 1958656855 1567 QAK 1569
Cdd:PRK14271 268 DVK 270
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1334-1554 |
3.06e-06 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 50.78 E-value: 3.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1334 SPLVVKELSKVYKEKVpllAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKV-QQW 1412
Cdd:PRK11231 1 MTLRTENLTVGYGTKR---ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQlARR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1413 IGYCPEFDALLNFMTGREmLVMHAR-----IRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGE 1487
Cdd:PRK11231 78 LALLPQHHLTPEGITVRE-LVAYGRspwlsLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQD 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 1488 PTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQ 1554
Cdd:PRK11231 157 TPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPE 223
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
554-741 |
3.24e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 52.43 E-value: 3.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 554 GQITVLLGHNGAGKTTVCSVLTGLIPPskghayihgceISKDMVRIRKNVGWCPQHDILFdNFTVTDHLYFygqlkGLSH 633
Cdd:PLN03130 643 GSLVAIVGSTGEGKTSLISAMLGELPP-----------RSDASVVIRGTVAYVPQVSWIF-NATVRDNILF-----GSPF 705
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 634 QDchEKIEEMLHTLGLEDKRNS-----------RSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWD-L 701
Cdd:PLN03130 706 DP--ERYERAIDVTALQHDLDLlpggdlteigeRGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDkC 783
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958656855 702 LQQQKGDRTVLLTT---HFMDEAdllgDRIAILAKGELQCCGT 741
Cdd:PLN03130 784 IKDELRGKTRVLVTnqlHFLSQV----DRIILVHEGMIKEEGT 822
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
534-735 |
3.32e-06 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 50.69 E-value: 3.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 534 FYTGRSKCiavKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGhayihgcEISKDMvrirknvgwcpQHDILF 613
Cdd:PRK11701 15 LYGPRKGC---RDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAG-------EVHYRM-----------RDGQLR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 614 DNFTVTDHlyfygQLK-------GLSHQDCHE----------KIEEMLHTLGLEDKRNSRSKFL---------------- 660
Cdd:PRK11701 74 DLYALSEA-----ERRrllrtewGFVHQHPRDglrmqvsaggNIGERLMAVGARHYGDIRATAGdwlerveidaariddl 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 661 ----SGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGDR--TVLLTTHFMDEADLLGDRIAILAKG 734
Cdd:PRK11701 149 pttfSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELglAVVIVTHDLAVARLLAHRLLVMKQG 228
|
.
gi 1958656855 735 E 735
Cdd:PRK11701 229 R 229
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
534-722 |
3.96e-06 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 49.64 E-value: 3.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 534 FYTGRSKCIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMV-----RIRKNVGWCPQ 608
Cdd:cd03290 7 YFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFeatrsRNRYSVAYAAQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 609 HDILFdNFTVTDHLYFYGQLKGLSHQ----DCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:cd03290 87 KPWLL-NATVEENITFGSPFNKQRYKavtdACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLD 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958656855 685 EPTSGMDSS-----SRRAIWDLLQQQKgdRTVLLTTH---FMDEAD 722
Cdd:cd03290 166 DPFSALDIHlsdhlMQEGILKFLQDDK--RTLVLVTHklqYLPHAD 209
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
1354-1527 |
4.75e-06 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 51.42 E-value: 4.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1354 VNKVSFVVKEKECFGLLGLNGAGKTSIFNMLT-REQpitsGDAFVKGF--NIRTDMAKVQQWIGYCPEFDALLNFMTGRE 1430
Cdd:PLN03211 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAgRIQ----GNNFTGTIlaNNRKPTKQILKRTGFVTQDDILYPHLTVRE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1431 MLVMHARIRgIPECHIKTCVDMILEN------LLMC---VYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMD 1501
Cdd:PLN03211 160 TLVFCSLLR-LPKSLTKQEKILVAESviselgLTKCentIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
|
170 180
....*....|....*....|....*.
gi 1958656855 1502 PVARRLVWDAVGRVRESGKTIVITSH 1527
Cdd:PLN03211 239 ATAAYRLVLTLGSLAQKGKTIVTSMH 264
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
542-702 |
5.35e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 51.32 E-value: 5.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 542 IAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAyihgcEISKDMvrirkNVGWCPQHDILF--DNFTVT 619
Cdd:PRK10636 326 IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI-----GLAKGI-----KLGYFAQHQLEFlrADESPL 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 620 DHlyfygqLKGLSHQDCHEKIEEMLHTLGLE-DKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAI 698
Cdd:PRK10636 396 QH------LARLAPQELEQKLRDYLGGFGFQgDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQAL 469
|
....
gi 1958656855 699 WDLL 702
Cdd:PRK10636 470 TEAL 473
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
1353-1524 |
6.09e-06 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 51.12 E-value: 6.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1353 AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRT-DMAKVQQWIGYCpeF-DALL------- 1423
Cdd:PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTvTRASLRRNIAVV--FqDAGLfnrsied 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1424 NFMTGREMlVMHARIRGIPEchIKTCVDMILENLLMcvyADKLV----KTYSDGNKRVLSTAIALLGEPTVILLDEPSTG 1499
Cdd:PRK13657 428 NIRVGRPD-ATDEEMRAAAE--RAQAHDFIERKPDG---YDTVVgergRQLSGGERQRLAIARALLKDPPILILDEATSA 501
|
170 180
....*....|....*....|....*
gi 1958656855 1500 MDPVARRLVWDAVGRVRESGKTIVI 1524
Cdd:PRK13657 502 LDVETEAKVKAALDELMKGRTTFII 526
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
543-716 |
6.57e-06 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 50.87 E-value: 6.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISK---DMVRIRKNVgwCPQHDILFDNfTVT 619
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKlqlDSWRSRLAV--VSQTPFLFSD-TVA 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 620 DHLyfygqlkGLSHQDC-HEKIEEM-----LHT------LGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPT 687
Cdd:PRK10789 407 NNI-------ALGRPDAtQQEIEHVarlasVHDdilrlpQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479
|
170 180
....*....|....*....|....*....
gi 1958656855 688 SGMDSSSRRAIWDLLQQQKGDRTVLLTTH 716
Cdd:PRK10789 480 SAVDGRTEHQILHNLRQWGEGRTVIISAH 508
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1336-1556 |
7.15e-06 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 49.71 E-value: 7.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKG--------FNIRTDMA 1407
Cdd:PRK13642 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGelltaenvWNLRRKIG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1408 KV-----QQWIGYCPEFDALLNFMTgremlvmhariRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAI 1482
Cdd:PRK13642 85 MVfqnpdNQFVGATVEDDVAFGMEN-----------QGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAG 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 1483 ALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGK-TIVITSHSMEECeALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:PRK13642 154 IIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQlTVLSITHDLDEA-ASSDRILVMKAGEIIKEAAPSEL 227
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
1350-1539 |
7.99e-06 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 48.69 E-value: 7.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1350 PLLAVNKVSFVVKEKECFGLL-------------GLNGAGKTSIFNMLTREQPITSGDAFVKGF-NIRTDMAKVQQWIGY 1415
Cdd:PRK13543 10 PLLAAHALAFSRNEEPVFGPLdfhvdageallvqGDNGAGKTTLLRVLAGLLHVESGQIQIDGKtATRGDRSRFMAYLGH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1416 CPEFDALLNFMTGREMLVmharirGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDE 1495
Cdd:PRK13543 90 LPGLKADLSTLENLHFLC------GLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1958656855 1496 PSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRL 1539
Cdd:PRK13543 164 PYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRM 207
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
525-732 |
1.06e-05 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 50.12 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 525 IEIQHLYKVFyTGRskcIAVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHayihgceiskdmVRIRKNV- 603
Cdd:PRK11819 325 IEAENLSKSF-GDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGT------------IKIGETVk 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 604 -GWCPQ-HDILFDNFTVtdhlyfygqlkglshqdcHEKIEEMLHTLGLEDKR-NSR---SKF-------------LSGGI 664
Cdd:PRK11819 389 lAYVDQsRDALDPNKTV------------------WEEISGGLDIIKVGNREiPSRayvGRFnfkggdqqkkvgvLSGGE 450
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 665 KRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGdrTVLLTTH---FMdeadllgDRIA--ILA 732
Cdd:PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPG--CAVVISHdrwFL-------DRIAthILA 514
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1357-1558 |
1.14e-05 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 48.99 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1357 VSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI----RTDMAKVQQWIGYCPEFDALLNFMTGREM- 1431
Cdd:PRK11831 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIpamsRSRLYTVRKRMSMLFQSGALFTDMNVFDNv 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1432 ---LVMHARIrgiPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKR--VLSTAIALlgEPTVILLDEPSTGMDPVARR 1506
Cdd:PRK11831 106 aypLREHTQL---PAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARraALARAIAL--EPDLIMFDEPFVGQDPITMG 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 1507 LVWDAVGRVRES-GKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKS 1558
Cdd:PRK11831 181 VLVKLISELNSAlGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
1350-1566 |
1.24e-05 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 50.21 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1350 PLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNI--------RTDMAKVQQWIGYcpeFDA 1421
Cdd:PRK11160 352 PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIadyseaalRQAISVVSQRVHL---FSA 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1422 LLnfmtgREMLVMharirGIPECHiktcvDMILENLLMCVYADKLVKTY--------------SDGNKRVLSTAIALLGE 1487
Cdd:PRK11160 429 TL-----RDNLLL-----AAPNAS-----DEALIEVLQQVGLEKLLEDDkglnawlgeggrqlSGGEQRRLGIARALLHD 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1488 PTVILLDEPSTGMDPVARRLVWDAVGRVREsGKTIVITSH---SMEECEALCtrlaIMVQGQFKCLGSPQHLKSRFGSGY 1564
Cdd:PRK11160 494 APLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHrltGLEQFDRIC----VMDNGQIIEQGTHQELLAQQGRYY 568
|
..
gi 1958656855 1565 SL 1566
Cdd:PRK11160 569 QL 570
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
1334-1501 |
1.30e-05 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 48.03 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1334 SPLVVKELSKVYKEKVPLLavNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPIT---SGDAFVKGFNIRTDMAKVQ 1410
Cdd:cd03233 5 SWRNISFTTGKGRSKIPIL--KDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEFAEKYP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1411 QWIGYCPEFDALLNFMTGREMLVMHARIRGipechiktcvdmilenllmcvyaDKLVKTYSDGNKRVLSTAIALLGEPTV 1490
Cdd:cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCKG-----------------------NEFVRGISGGERKRVSIAEALVSRASV 139
|
170
....*....|.
gi 1958656855 1491 ILLDEPSTGMD 1501
Cdd:cd03233 140 LCWDNSTRGLD 150
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
548-736 |
1.55e-05 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 49.52 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 548 SMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEIS----KDMVRI--------RKNVGWCPQHDILfDN 615
Cdd:PRK11288 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDirspRDAIRAgimlcpedRKAEGIIPVHSVA-DN 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 616 FTVT---DHLYFygqlkGLSHQDCHEKIEEMLHTLGLEDKRNSRSK---FLSGGIKRKLAIGIALIAGSKVLILDEPTSG 689
Cdd:PRK11288 352 INISarrHHLRA-----GCLINNRWEAENADRFIRSLNIKTPSREQlimNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958656855 690 MDSSSRRAIWDLLQQ-QKGDRTVLLTTHfmDEADLLG--DRIAILAKGEL 736
Cdd:PRK11288 427 IDVGAKHEIYNVIYElAAQGVAVLFVSS--DLPEVLGvaDRIVVMREGRI 474
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
1336-1571 |
1.72e-05 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 48.70 E-value: 1.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVPLLAVNkVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPiTSGDAFVKGFNIRTdmAKVQQW--- 1412
Cdd:cd03289 3 MTVKDLTAKYTEGGNAVLEN-ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNS--VPLQKWrka 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1413 IGYCPEfDALLNFMTGREMLVMHAR------IRGIPECHIKTCVDMILENL-LMCVYADKLVktySDGNKRVLSTAIALL 1485
Cdd:cd03289 79 FGVIPQ-KVFIFSGTFRKNLDPYGKwsdeeiWKVAEEVGLKSVIEQFPGQLdFVLVDGGCVL---SHGHKQLMCLARSVL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1486 GEPTVILLDEPSTGMDPVARRLVWDAVgRVRESGKTIVITSHSMeecEAL--CTRLAIMVQGQFKCLGSPQHL---KSRF 1560
Cdd:cd03289 155 SKAKILLLDEPSAHLDPITYQVIRKTL-KQAFADCTVILSEHRI---EAMleCQRFLVIEENKVRQYDSIQKLlneKSHF 230
|
250
....*....|.
gi 1958656855 1561 GSGYSLQAKVR 1571
Cdd:cd03289 231 KQAISPSDRLK 241
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1353-1546 |
2.38e-05 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 49.16 E-value: 2.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1353 AVNKVSFVVKEKECFGLLGLNGAGKTSIFNML-------TREQPITSGDAFVKGFNIRTDMAK----VQQWIGYCPEFDA 1421
Cdd:PRK13549 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLsgvyphgTYEGEIIFEGEELQASNIRDTERAgiaiIHQELALVKELSV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1422 LLNFMTGREMlvMHARIRGIPECHIKTcvDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMD 1501
Cdd:PRK13549 100 LENIFLGNEI--TPGGIMDYDAMYLRA--QKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLT 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1958656855 1502 PVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:PRK13549 176 ESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
543-716 |
2.62e-05 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 48.20 E-value: 2.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIP-PSKGHAyiHGCEIS-KDMVRI-----RKNVGwCPQHDILFDN 615
Cdd:PRK11022 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDyPGRVMA--EKLEFNgQDLQRIsekerRNLVG-AEVAMIFQDP 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 616 FTVTDHLYFYG-----QLK---GLSHQDCHEKIEEMLHTLGLEDKRNSRSKF---LSGGIKRKLAIGIALIAGSKVLILD 684
Cdd:PRK11022 99 MTSLNPCYTVGfqimeAIKvhqGGNKKTRRQRAIDLLNQVGIPDPASRLDVYphqLSGGMSQRVMIAMAIACRPKLLIAD 178
|
170 180 190
....*....|....*....|....*....|....
gi 1958656855 685 EPTSGMDSSSRRAIWDLL--QQQKGDRTVLLTTH 716
Cdd:PRK11022 179 EPTTALDVTIQAQIIELLleLQQKENMALVLITH 212
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
553-731 |
3.87e-05 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 46.03 E-value: 3.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 553 KGQITVLLGHNGAGKTTVCSVLTGLIPPSKGhayihgcEISKDMVRIrknvGWCPQhdilfdnftvtdhlyfygqlkgls 632
Cdd:cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGD-------NDEWDGITP----VYKPQ------------------------ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 633 hqdcheKIEemlhtlgledkrnsrskfLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSR----RAIWDLLqqQKGD 708
Cdd:cd03222 69 ------YID------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRlnaaRAIRRLS--EEGK 122
|
170 180
....*....|....*....|...
gi 1958656855 709 RTVLLTTHFMDEADLLGDRIAIL 731
Cdd:cd03222 123 KTALVVEHDLAVLDYLSDRIHVF 145
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
660-717 |
4.11e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 45.81 E-value: 4.11e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 660 LSGGIKRKLAI----GIALIAGSKVLILDEPTSGMDSSSRRAI-WDLLQQQKGDRTVLLTTHF 717
Cdd:cd03227 78 LSGGEKELSALalilALASLKPRPLYILDEIDRGLDPRDGQALaEAILEHLVKGAQVIVITHL 140
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
1357-1527 |
6.09e-05 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 46.10 E-value: 6.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1357 VSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKgfnirtdmAKVQQWIGYCPEFDALLnfmtgremlvmha 1436
Cdd:COG2401 49 LNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCVD--------VPDNQFGREASLIDAIG------------- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1437 rirgipechIKTCVDMILENLLMCVYAD-----KLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDA 1511
Cdd:COG2401 108 ---------RKGDFKDAVELLNAVGLSDavlwlRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTAKRVARN 178
|
170
....*....|....*..
gi 1958656855 1512 VGR-VRESGKTIVITSH 1527
Cdd:COG2401 179 LQKlARRAGITLVVATH 195
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
553-737 |
6.95e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 44.67 E-value: 6.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 553 KGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEISKDMVRIRKnvgwcpqhdilfdnftvtdhlyfygqlkgls 632
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQL------------------------------- 49
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 633 hqdchekieemlhtlgLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQ-------QQ 705
Cdd:smart00382 50 ----------------LLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEElrlllllKS 113
|
170 180 190
....*....|....*....|....*....|..
gi 1958656855 706 KGDRTVLLTTHfmDEADLLGDRIAILAKGELQ 737
Cdd:smart00382 114 EKNLTVILTTN--DEKDLGPALLRRRFDRRIV 143
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1336-1565 |
7.54e-05 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 46.23 E-value: 7.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKvPLLAvnKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAK---VQQW 1412
Cdd:PRK11248 2 LQISHLYADYGGK-PALE--DINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAErgvVFQN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1413 IGYCPEFDALLNFMTGREMlvmhariRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVIL 1492
Cdd:PRK11248 79 EGLLPWRNVQDNVAFGLQL-------AGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958656855 1493 LDEPSTGMDPVARRLVWDAVGRV-RESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLgspQHLKSRFGSGYS 1565
Cdd:PRK11248 152 LDEPFGALDAFTREQMQTLLLKLwQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV---ERLPLNFARRFV 222
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
1471-1531 |
8.16e-05 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 46.18 E-value: 8.16e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 1471 SDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVR-ESGKTIVITSHSMEE 1531
Cdd:PRK14258 152 SGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRlRSELTMVIVSHNLHQ 213
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
1471-1554 |
1.05e-04 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 46.36 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1471 SDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQFKCL 1550
Cdd:PRK13641 147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226
|
....
gi 1958656855 1551 GSPQ 1554
Cdd:PRK13641 227 ASPK 230
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
1357-1563 |
1.08e-04 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 45.99 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1357 VSFVVKEKECFGLLGLNGAGKTSI---FNMLTREQPIT--SGDAFVKGFNI---RTDMAKVQQWIGYCPEFDALLNFMTG 1428
Cdd:PRK14267 23 VDLKIPQNGVFALMGPSGCGKSTLlrtFNRLLELNEEArvEGEVRLFGRNIyspDVDPIEVRREVGMVFQYPNPFPHLTI 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1429 REMLVMHARIRGI--PECHIKTCVDMILENLLMCVYADKLVKTY----SDGNKRVLSTAIALLGEPTVILLDEPSTGMDP 1502
Cdd:PRK14267 103 YDNVAIGVKLNGLvkSKKELDERVEWALKKAALWDEVKDRLNDYpsnlSGGQRQRLVIARALAMKPKILLMDEPTANIDP 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 1503 VARRLVWDAVGRVRESgKTIVITSHSMEECEALCTRLAIMVQGQF-------KCLGSPQH-LKSRFGSG 1563
Cdd:PRK14267 183 VGTAKIEELLFELKKE-YTIVLVTHSPAQAARVSDYVAFLYLGKLievgptrKVFENPEHeLTEKYVTG 250
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
545-721 |
1.23e-04 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 46.85 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 545 KDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIhgceiSKDMvrirkNVGWCPQHDILFDNFTVT----- 619
Cdd:TIGR03719 22 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARP-----QPGI-----KVGYLPQEPQLDPTKTVRenvee 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 620 ------------DHLYF--------YGQLKG--------LSHQDCHE---KIEEMLHTLGLEDKRNSRSKfLSGGIKRKL 668
Cdd:TIGR03719 92 gvaeikdaldrfNEISAkyaepdadFDKLAAeqaelqeiIDAADAWDldsQLEIAMDALRCPPWDADVTK-LSGGERRRV 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 669 AIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLLQQQKGdrTVLLTTH---FMDEA 721
Cdd:TIGR03719 171 ALCRLLLSKPDMLLLDEPTNHLDAESVAWLERHLQEYPG--TVVAVTHdryFLDNV 224
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
544-748 |
1.27e-04 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 47.21 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHayihgceiskdmVRIRKNVGWCPQHDILFDNfTVTDHLY 623
Cdd:TIGR01271 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGK------------IKHSGRISFSPQTSWIMPG-TIKDNII 508
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 624 FygqlkGLSHQD---------CheKIEEMLHTLGLEDKR--NSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDS 692
Cdd:TIGR01271 509 F-----GLSYDEyrytsvikaC--QLEEDIALFPEKDKTvlGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 693 SSRRAIWD-LLQQQKGDRTVLLTTHFMDEADlLGDRIAILAKGELQCCGTPSFLKQK 748
Cdd:TIGR01271 582 VTEKEIFEsCLCKLMSNKTRILVTSKLEHLK-KADKILLLHEGVCYFYGTFSELQAK 637
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
1357-1556 |
1.65e-04 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 45.42 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1357 VSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPI------TSGDAFVKGFNI-RTDMAKVQQWIGYCPEFDALLNFMTGR 1429
Cdd:PRK14246 29 ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIydskikVDGKVLYFGKDIfQIDAIKLRKEVGMVFQQPNPFPHLSIY 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1430 EMLVMHARIRGIPEchiKTCVDMILENLLMCV-----YADKL---VKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMD 1501
Cdd:PRK14246 109 DNIAYPLKSHGIKE---KREIKKIVEECLRKVglwkeVYDRLnspASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1958656855 1502 PVARRLVWDAVGRVRESgKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:PRK14246 186 IVNSQAIEKLITELKNE-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1336-1555 |
1.97e-04 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 44.92 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKekvPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKG---------------- 1399
Cdd:PRK11701 7 LSVRGLTKLYG---PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMrdgqlrdlyalseaer 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1400 -FNIRTDMAKVQQwigycpefdallNFMTGREMLV----------M------HARIRG----------IPECHIktcvdm 1452
Cdd:PRK11701 84 rRLLRTEWGFVHQ------------HPRDGLRMQVsaggnigerlMavgarhYGDIRAtagdwlerveIDAARI------ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1453 ilenllmcvyaDKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMD-PVARRLVwDAV-GRVRESGKTIVITSHSME 1530
Cdd:PRK11701 146 -----------DDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDvSVQARLL-DLLrGLVRELGLAVVIVTHDLA 213
|
250 260 270
....*....|....*....|....*....|..
gi 1958656855 1531 ECEALCTRLAIMVQGQF-------KCLGSPQH 1555
Cdd:PRK11701 214 VARLLAHRLLVMKQGRVvesgltdQVLDDPQH 245
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1357-1548 |
2.35e-04 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 44.38 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1357 VSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIrTDMAKVQ------QWIGYCPEFDALLNFMTGRE 1430
Cdd:PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPL-HQMDEEAraklraKHVGFVFQSFMLIPTLNALE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1431 MLVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDpvarRLVWD 1510
Cdd:PRK10584 108 NVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD----RQTGD 183
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958656855 1511 AVGRV-----RESGKTIVITSHSmEECEALCTRLAIMVQGQFK 1548
Cdd:PRK10584 184 KIADLlfslnREHGTTLILVTHD-LQLAARCDRRLRLVNGQLQ 225
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
544-746 |
3.29e-04 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 44.46 E-value: 3.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGhayihgceiskdMVRIRKNVGWCPQHDILFDNfTVTDHLY 623
Cdd:cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEG------------KIKHSGRISFSSQFSWIMPG-TIKENII 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 624 F---YGQLKGLSH-QDCheKIEEMLHTLGLEDKR--NSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRA 697
Cdd:cd03291 120 FgvsYDEYRYKSVvKAC--QLEEDITKFPEKDNTvlGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKE 197
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958656855 698 IWD-LLQQQKGDRTVLLTTHFMDEADlLGDRIAILAKGELQCCGTPSFLK 746
Cdd:cd03291 198 IFEsCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQ 246
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
543-735 |
3.99e-04 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 45.11 E-value: 3.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGCEI----SKDMvrIRKNVGWCPQHDILFDNFTV 618
Cdd:PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIdfksSKEA--LENGISMVHQELNLVLQRSV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 619 TDHLYFyGQ--LKGL--SHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSS 694
Cdd:PRK10982 91 MDNMWL-GRypTKGMfvDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE 169
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958656855 695 RRAIWDLLQQQKgDR--TVLLTTHFMDEADLLGDRIAILAKGE 735
Cdd:PRK10982 170 VNHLFTIIRKLK-ERgcGIVYISHKMEEIFQLCDEITILRDGQ 211
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
543-716 |
4.96e-04 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 44.88 E-value: 4.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 543 AVKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGLIPPSKGHAYIHGceiSKDMVRIRKNvgwcpqhdiLFDNFTVTDHL 622
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG---SAALIAISSG---------LNGQLTGIENI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 623 YFYGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSRRAIWDLL 702
Cdd:PRK13545 107 ELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKM 186
|
170
....*....|....*
gi 1958656855 703 QQQKGD-RTVLLTTH 716
Cdd:PRK13545 187 NEFKEQgKTIFFISH 201
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
1464-1531 |
4.98e-04 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 44.00 E-value: 4.98e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 1464 DKLVKT---YSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESgKTIVITSHSMEE 1531
Cdd:PRK14243 143 DKLKQSglsLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQ 212
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
1352-1527 |
5.55e-04 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 43.55 E-value: 5.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1352 LAVNKVSFvvKEKECFGLLGLNGAGKTSIFNMLT-REQPiTSGDAFVKgfniRTDMAKVQQWIGycPEFDallnfMTGRE 1430
Cdd:cd03237 15 LEVEGGSI--SESEVIGILGPNGIGKTTFIKMLAgVLKP-DEGDIEIE----LDTVSYKPQYIK--ADYE-----GTVRD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1431 MLVMHARIRGIPECHIKTCVD-MILENLLmcvyaDKLVKTYSDGN-KRVlstAIAL-LGEPTVI-LLDEPSTGMDPVARR 1506
Cdd:cd03237 81 LLSSITKDFYTHPYFKTEIAKpLQIEQIL-----DREVPELSGGElQRV---AIAAcLSKDADIyLLDEPSAYLDVEQRL 152
|
170 180
....*....|....*....|..
gi 1958656855 1507 LVWDAVGRVRESG-KTIVITSH 1527
Cdd:cd03237 153 MASKVIRRFAENNeKTAFVVEH 174
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1336-1399 |
6.03e-04 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 43.62 E-value: 6.03e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1336 LVVKELSKVYKEKVPLL------AVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKG 1399
Cdd:PRK15112 5 LEVRNLSKTFRYRTGWFrrqtveAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDD 74
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
1351-1528 |
6.21e-04 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 42.94 E-value: 6.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1351 LLAVNKVSFVVKEKECFGLL------------GLNGAGKTSIFNMLTREQPITSGDAFVKGFNIrTDMAKvqQWIGYCPE 1418
Cdd:PRK13541 1 MLSLHQLQFNIEQKNLFDLSitflpsaityikGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI-NNIAK--PYCTYIGH 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1419 FDALLNFMTGREMLVMHARIRGIPECHIKTCVDMILENLLmcvyaDKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPST 1498
Cdd:PRK13541 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLL-----DEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVET 152
|
170 180 190
....*....|....*....|....*....|
gi 1958656855 1499 GMDPVARRLVWDAVGRVRESGKTIVITSHS 1528
Cdd:PRK13541 153 NLSKENRDLLNNLIVMKANSGGIVLLSSHL 182
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
544-736 |
6.41e-04 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 44.40 E-value: 6.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 544 VKDLSMNLYKGQITVLLGHNGAGKTTVCSVLTGlipPSKGH-----AYIHGCEISKDMVR--I----------RKNVGWC 606
Cdd:NF040905 276 VDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFG---RSYGRnisgtVFKDGKEVDVSTVSdaIdaglayvtedRKGYGLN 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 607 PQHDILFdNFTVTDhlyfygqLKGLSHQDCHEKIEEMLHTLGLEDKRNSRSKF-------LSGGIKRKLAIGIALIAGSK 679
Cdd:NF040905 353 LIDDIKR-NITLAN-------LGKVSRRGVIDENEEIKVAEEYRKKMNIKTPSvfqkvgnLSGGNQQKVVLSKWLFTDPD 424
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958656855 680 VLILDEPTSGMDSSSRRAIW----DLLQQQKGdrtVLLTTHFMDEadLLG--DRIAILAKGEL 736
Cdd:NF040905 425 VLILDEPTRGIDVGAKYEIYtiinELAAEGKG---VIVISSELPE--LLGmcDRIYVMNEGRI 482
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1481-1529 |
9.14e-04 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 43.10 E-value: 9.14e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1958656855 1481 AIALlgEPTVILLDEPSTGMDPVARRLVWDAVGRVRESgKTIVITSHSM 1529
Cdd:COG1117 168 ALAV--EPEVLLMDEPTSALDPISTAKIEELILELKKD-YTIVIVTHNM 213
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1331-1547 |
1.46e-03 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 43.07 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1331 IKKSPLVVKELSK----VYKEKVpllavnkvsfvvkekecFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDM 1406
Cdd:PRK10762 10 IDKAFPGVKALSGaalnVYPGRV-----------------MALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1407 AKVQQWIG---------YCPEFDALLNFMTGREMLvmhARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRV 1477
Cdd:PRK10762 73 PKSSQEAGigiihqelnLIPQLTIAENIFLGREFV---NRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQM 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1478 LSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQF 1547
Cdd:PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQF 219
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1471-1546 |
1.77e-03 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 42.79 E-value: 1.77e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 1471 SDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGL 468
|
|
| PRK00098 |
PRK00098 |
GTPase RsgA; Reviewed |
496-569 |
2.13e-03 |
|
GTPase RsgA; Reviewed
Pssm-ID: 234631 [Multi-domain] Cd Length: 298 Bit Score: 42.11 E-value: 2.13e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 496 IPPLLVIgdpektSKGDFLQDEPAghinAIEIQHL-----YKVFYTGRSKCIAVKDLsMNLYKGQITVLLGHNGAGKTT 569
Cdd:PRK00098 112 IKPIIVL------NKIDLLDDLEE----ARELLALyraigYDVLELSAKEGEGLDEL-KPLLAGKVTVLAGQSGVGKST 179
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
1471-1546 |
2.28e-03 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 42.10 E-value: 2.28e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958656855 1471 SDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRE-SGKTIVITSHSMEECEALCTRLAIMVQGQ 1546
Cdd:PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQnNNTTILLISHDLQMLSQWADKINVLYCGQ 236
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
1481-1545 |
2.46e-03 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 41.61 E-value: 2.46e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958656855 1481 AIALLGEPTVILLDEPSTGMDPVARRLVWDAVGR-VRESGKTIVITSHSMEECEALCTRLAIMVQG 1545
Cdd:PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESiVQKRALGMLLVTHDMGVVARLADDVAVMSHG 217
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
1463-1508 |
2.71e-03 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 42.31 E-value: 2.71e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1958656855 1463 ADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLV 1508
Cdd:PRK10938 395 ADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLV 440
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
1354-1527 |
2.89e-03 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 40.42 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1354 VNKVSFVvkEKECFGLLGLNGAGKTSIFnmltreqpitsgdafvkgfnirtdmakvqqwigycpefDALLnFMTGREMLV 1433
Cdd:cd03227 13 PNDVTFG--EGSLTIITGPNGSGKSTIL--------------------------------------DAIG-LALGGAQSA 51
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1434 MHARIRGIPEChIKTCVDMILENLLMCVyadklvktySDGNKRVLSTAIAL----LGEPTVILLDEPSTGMDPVARRLVW 1509
Cdd:cd03227 52 TRRRSGVKAGC-IVAAVSAELIFTRLQL---------SGGEKELSALALILalasLKPRPLYILDEIDRGLDPRDGQALA 121
|
170
....*....|....*...
gi 1958656855 1510 DAVGRVRESGKTIVITSH 1527
Cdd:cd03227 122 EAILEHLVKGAQVIVITH 139
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
1468-1527 |
3.29e-03 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 42.32 E-value: 3.29e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 1468 KTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESG-KTIVITSH 1527
Cdd:PTZ00265 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAdKTIITIAH 1417
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1358-1527 |
4.16e-03 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 40.56 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1358 SFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIRTDMAKVQQ---WIGYCPEFDALLnfmTGREMLVM 1434
Cdd:PRK13538 21 SFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQdllYLGHQPGIKTEL---TALENLRF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1435 HARIRGIPEchiktcvDMILENLLMCV----YADKLVKTYSDGNKRvlSTAIA--LLGEPTVILLDEPST-----GMDPV 1503
Cdd:PRK13538 98 YQRLHGPGD-------DEALWEALAQVglagFEDVPVRQLSAGQQR--RVALArlWLTRAPLWILDEPFTaidkqGVARL 168
|
170 180
....*....|....*....|....
gi 1958656855 1504 ARRLVWDAvgrvrESGKTIVITSH 1527
Cdd:PRK13538 169 EALLAQHA-----EQGGMVILTTH 187
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
1338-1394 |
4.68e-03 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 41.46 E-value: 4.68e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958656855 1338 VKELSKVYKEKvplLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLT-REQP----ITSGD 1394
Cdd:TIGR03719 325 AENLTKAFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITgQEQPdsgtIEIGE 383
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
1333-1403 |
4.70e-03 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 41.54 E-value: 4.70e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958656855 1333 KSPLVVKELSKVYKEKvPLLAVNKVSFVVKEKECFGLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIR 1403
Cdd:PRK11176 339 KGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLR 408
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
1471-1547 |
4.87e-03 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 41.70 E-value: 4.87e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958656855 1471 SDGN--KRVLSTAiaLLGEPTVILLDEPSTGMDPVARRLVWDAVGRVRESGKTIVITSHSMEECEALCTRLAIMVQGQF 1547
Cdd:NF040905 406 SGGNqqKVVLSKW--LFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEGKGVIVISSELPELLGMCDRIYVMNEGRI 482
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
1481-1559 |
7.32e-03 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 40.66 E-value: 7.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1481 AIALLGEPTVILLDEPSTGMDPVAR----RLVwDAVGRVResGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL 1556
Cdd:COG4170 170 AMAIANQPRLLIADEPTNAMESTTQaqifRLL-ARLNQLQ--GTSILLISHDLESISQWADTITVLYCGQTVESGPTEQI 246
|
...
gi 1958656855 1557 KSR 1559
Cdd:COG4170 247 LKS 249
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
1352-1564 |
7.51e-03 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 40.78 E-value: 7.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1352 LAVNKVSFVVkekecfgLLGLNGAGKTSIFNMLTREQPITSGDAFVKGFNIrTDMAKVQQWIGYCPEFDALLNFMTGREM 1431
Cdd:PRK11000 24 LDIHEGEFVV-------FVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM-NDVPPAERGVGMVFQSYALYPHLSVAEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 1432 LVMHARIRGIPECHIKTCVDMILENLLMCVYADKLVKTYSDGNKRVLSTAIALLGEPTVILLDEPSTGMDPVARRLVWDA 1511
Cdd:PRK11000 96 MSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958656855 1512 VGRV-RESGKTIVITSHSMEECEALCTRLAIMVQGQFKCLGSPQHL----KSRFGSGY 1564
Cdd:PRK11000 176 ISRLhKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELyhypANRFVAGF 233
|
|
| RsgA_GTPase |
pfam03193 |
RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are ... |
496-576 |
7.67e-03 |
|
RsgA GTPase; RsgA (also known as EngC and YjeQ) represents a protein family whose members are broadly conserved in bacteria and are indispensable for growth. The GTPase domain of RsgA is very similar to several P-loop GTPases, but differs in having a circular permutation of the GTPase structure described by a G4-G1-G3 pattern.
Pssm-ID: 427191 [Multi-domain] Cd Length: 174 Bit Score: 39.06 E-value: 7.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 496 IPPLLVIgdpektSKGDFLQDEPAGHINAIEIQHL-YKVFYTGRSKCIAVKDLsMNLYKGQITVLLGHNGAGKTTVCSVL 574
Cdd:pfam03193 54 IEPVIVL------NKIDLLDEEEELEELLKIYRAIgYPVLFVSAKTGEGIEAL-KELLKGKTTVLAGQSGVGKSTLLNAL 126
|
..
gi 1958656855 575 TG 576
Cdd:pfam03193 127 LP 128
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
625-728 |
8.93e-03 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 40.92 E-value: 8.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958656855 625 YGQLKGLSHQDCHEKIEEMLHTLGLEDKRNSRS-KFLSGGIKRKLAIGIALIAGSKVLILDEPTSGMDSSSrrAIW--DL 701
Cdd:PRK10636 114 HGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPvSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDA--VIWleKW 191
|
90 100
....*....|....*....|....*..
gi 1958656855 702 LQQQKGdrTVLLTTHFMDEADLLGDRI 728
Cdd:PRK10636 192 LKSYQG--TLILISHDRDFLDPIVDKI 216
|
|
| |
