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Conserved domains on  [gi|1958658268|ref|XP_038941829|]
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PWWP domain-containing protein 2A isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PWWP_PWWP2A cd20152
PWWP domain found in PWWP domain-containing protein 2A (PWWP2A); PWWP2A is a H2A.Z-specific ...
412-533 6.17e-80

PWWP domain found in PWWP domain-containing protein 2A (PWWP2A); PWWP2A is a H2A.Z-specific chromatin binding protein which may play an important role in the neural crest stem cell migration and differentiation during early development. It is also required for proper mitosis progression. PWWP2A and its paralog PWWP2B form a stable complex with NuRD subunits MTA1/2/3:HDAC1/2:RBBP4/7, but not with MBD2/3, p66alpha/beta, and CHD3/4. The PWWP domain specifically recognizes DNA and histone methylated lysines.


:

Pssm-ID: 438980  Cd Length: 122  Bit Score: 245.69  E-value: 6.17e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 412 KMKIFSKNVSKCITPDGRTICVGDIVWAKIYGFPWWPARILTITVSRRDNGLLARQEARISWFASPTTSFLALSQLSPFL 491
Cdd:cd20152     1 KGKVFSKNVSKCVTPDGRTICVGDIVWAKIYGFPWWPARILAITVSRKDNGLLVRQEARISWFGSPTTSFLALSQLAPFL 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1958658268 492 ENFQLRFNKKRKGLYRRAITEAAKAAKQLTPEVRALLTQFET 533
Cdd:cd20152    81 ENFQSRFNKKRKGLYRKAITEAAKAAKQLTPEVRALLTQFET 122
 
Name Accession Description Interval E-value
PWWP_PWWP2A cd20152
PWWP domain found in PWWP domain-containing protein 2A (PWWP2A); PWWP2A is a H2A.Z-specific ...
412-533 6.17e-80

PWWP domain found in PWWP domain-containing protein 2A (PWWP2A); PWWP2A is a H2A.Z-specific chromatin binding protein which may play an important role in the neural crest stem cell migration and differentiation during early development. It is also required for proper mitosis progression. PWWP2A and its paralog PWWP2B form a stable complex with NuRD subunits MTA1/2/3:HDAC1/2:RBBP4/7, but not with MBD2/3, p66alpha/beta, and CHD3/4. The PWWP domain specifically recognizes DNA and histone methylated lysines.


Pssm-ID: 438980  Cd Length: 122  Bit Score: 245.69  E-value: 6.17e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 412 KMKIFSKNVSKCITPDGRTICVGDIVWAKIYGFPWWPARILTITVSRRDNGLLARQEARISWFASPTTSFLALSQLSPFL 491
Cdd:cd20152     1 KGKVFSKNVSKCVTPDGRTICVGDIVWAKIYGFPWWPARILAITVSRKDNGLLVRQEARISWFGSPTTSFLALSQLAPFL 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1958658268 492 ENFQLRFNKKRKGLYRRAITEAAKAAKQLTPEVRALLTQFET 533
Cdd:cd20152    81 ENFQSRFNKKRKGLYRKAITEAAKAAKQLTPEVRALLTQFET 122
PWWP pfam00855
PWWP domain; The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. The domain ...
434-518 9.59e-14

PWWP domain; The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. The domain binds to Histone-4 methylated at lysine-20, H4K20me, suggesting that it is methyl-lysine recognition motif. Removal of two conserved aromatic residues in a hydrophobic cavity created by this domain within the full-length protein, Pdp1, abolishes the interaction o f the protein with H4K20me3. In fission yeast, Set9 is the sole enzyme that catalyzes all three states of H4K20me, and Set9-mediated H4K20me is required for efficient recruitment of checkpoint protein Crb2 to sites of DNA damage. The methylation of H4K20 is involved in a diverse array of cellular processes, such as organizing higher-order chromatin, maintaining genome stability, and regulating cell-cycle progression.


Pssm-ID: 459964 [Multi-domain]  Cd Length: 92  Bit Score: 67.07  E-value: 9.59e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 434 GDIVWAKIYGFPWWPARILTITVSRRDNGLLARQEARIS--WFASPTTSFLALSQLSPFLENFQLRF-----NKKRKGLY 506
Cdd:pfam00855   1 GDLVWAKLKGYPWWPARVVDPEELPENVLKPKKKDGEYLvrFFGDSEFAWVKPKDLKPFDEGDEFEYlkkkkKKKKKKAF 80
                          90
                  ....*....|..
gi 1958658268 507 RRAITEAAKAAK 518
Cdd:pfam00855  81 KKALEEAEEALK 92
PWWP smart00293
domain with conserved PWWP motif; conservation of Pro-Trp-Trp-Pro residues
434-491 5.73e-08

domain with conserved PWWP motif; conservation of Pro-Trp-Trp-Pro residues


Pssm-ID: 214603 [Multi-domain]  Cd Length: 63  Bit Score: 49.65  E-value: 5.73e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958658268  434 GDIVWAKIYGFPWWPARILT-------ITVSRRDNGLLARQearisWFASPTTSFLALSQLSPFL 491
Cdd:smart00293   4 GDLVWAKMKGFPWWPALVISpkmtpdnIMKRKSDENLYPVL-----FFGDKDTAWIPSSKLFPLT 63
 
Name Accession Description Interval E-value
PWWP_PWWP2A cd20152
PWWP domain found in PWWP domain-containing protein 2A (PWWP2A); PWWP2A is a H2A.Z-specific ...
412-533 6.17e-80

PWWP domain found in PWWP domain-containing protein 2A (PWWP2A); PWWP2A is a H2A.Z-specific chromatin binding protein which may play an important role in the neural crest stem cell migration and differentiation during early development. It is also required for proper mitosis progression. PWWP2A and its paralog PWWP2B form a stable complex with NuRD subunits MTA1/2/3:HDAC1/2:RBBP4/7, but not with MBD2/3, p66alpha/beta, and CHD3/4. The PWWP domain specifically recognizes DNA and histone methylated lysines.


Pssm-ID: 438980  Cd Length: 122  Bit Score: 245.69  E-value: 6.17e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 412 KMKIFSKNVSKCITPDGRTICVGDIVWAKIYGFPWWPARILTITVSRRDNGLLARQEARISWFASPTTSFLALSQLSPFL 491
Cdd:cd20152     1 KGKVFSKNVSKCVTPDGRTICVGDIVWAKIYGFPWWPARILAITVSRKDNGLLVRQEARISWFGSPTTSFLALSQLAPFL 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1958658268 492 ENFQLRFNKKRKGLYRRAITEAAKAAKQLTPEVRALLTQFET 533
Cdd:cd20152    81 ENFQSRFNKKRKGLYRKAITEAAKAAKQLTPEVRALLTQFET 122
PWWP_PWWP2B cd20153
PWWP domain found in PWWP domain-containing protein 2B (PWWP2B); PWWP2B is a paralog of PWWP2A, ...
418-533 5.95e-62

PWWP domain found in PWWP domain-containing protein 2B (PWWP2B); PWWP2B is a paralog of PWWP2A, a H2A.Z-specific chromatin binding protein which may play an important role in the neural crest stem cell migration and differentiation during early development. PWWP2A and PWWP2B form a stable complex with NuRD subunits MTA1/2/3:HDAC1/2:RBBP4/7, but not with MBD2/3, p66alpha/beta, and CHD3/4. The PWWP domain specifically recognizes DNA and histone methylated lysines.


Pssm-ID: 438981  Cd Length: 116  Bit Score: 199.03  E-value: 5.95e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 418 KNVSKCITPDGRTICVGDIVWAKIYGFPWWPARILTITVSRRDNGLLARQEARISWFASPTTSFLALSQLSPFLENFQLR 497
Cdd:cd20153     1 KSVSKCVTEEGRTVSVGDIVWGKIHGFPWWPARVLSISLSQKEDGEPSWQEAKVSWFGSPTTSLLSVSKLSPFSEFFKLR 80
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1958658268 498 FNKKRKGLYRRAITEAAKAAKQLTPEVRALLTQFET 533
Cdd:cd20153    81 FNRKKKGMYRKAITEAAKAAEHLTPEIRELLTQFET 116
PWWP_PWWP2 cd20140
PWWP domain found in the PWWP domain-containing protein 2 (PWWP2) family; The PWWP2 family ...
428-519 3.22e-53

PWWP domain found in the PWWP domain-containing protein 2 (PWWP2) family; The PWWP2 family includes PWWP2A and its paralog PWWP2B. PWWP2A is a H2A.Z-specific chromatin binding protein which may play an important role in the neural crest stem cell migration and differentiation during early development. It is also required for proper mitosis progression. PWWP2A and PWWP2B form a stable complex with NuRD subunits MTA1/2/3:HDAC1/2:RBBP4/7, but not with MBD2/3, p66alpha/beta, and CHD3/4. The PWWP domain specifically recognizes DNA and histone methylated lysines.


Pssm-ID: 438968  Cd Length: 92  Bit Score: 175.14  E-value: 3.22e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 428 GRTICVGDIVWAKIYGFPWWPARILTITVSRRDNGLLARQEARISWFASPTTSFLALSQLSPFLENFQLRFNKKRKGLYR 507
Cdd:cd20140     1 GRTLRVGDIVWGKIHGFPWWPGRILSITVSRDDNGELSTQEAHVSWFGSSTTSYMPCSQLYPFLEDFKLRYNKKKRGPYK 80
                          90
                  ....*....|..
gi 1958658268 508 RAITEAAKAAKQ 519
Cdd:cd20140    81 EAVRQALEAAKQ 92
PWWP_DNMT3 cd05835
PWWP domain found in the DNA (cytosine-5)-methyltransferase 3 (DNMT3) family; The DNMT3 family ...
433-520 1.02e-17

PWWP domain found in the DNA (cytosine-5)-methyltransferase 3 (DNMT3) family; The DNMT3 family includes DNMT3A and DNMT3B, which are required for genome-wide de novo methylation and is essential for the establishment of DNA methylation patterns during development. DNMT3A, also called DNA methyltransferase HsaIIIA, DNA MTase HsaIIIA, or M.HsaIIIA, modifies DNA in a non-processive manner and also methylates non-CpG sites. It may preferentially methylate DNA linker between 2 nucleosomal cores and is inhibited by histone H1. DNMT3A is recruited to trimethylated 'Lys-36' of histone H3 (H3K36me3) sites. DNMT3B, also called DNA methyltransferase HsaIIIB, DNA MTase HsaIIIB, or M.HsaIIIB, may preferentially methylate nucleosomal DNA within the nucleosome core region. DNMT3B may function as a transcriptional co-repressor by associating with CBX4 and independently of DNA methylation. Members of this family contains a PWWP domain that is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by DNMT3B is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of DNMT3B has been identified in patients with ICF (immunodeficiency, centromeric instability, and facial anomalie) syndrome , a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA.


Pssm-ID: 438960 [Multi-domain]  Cd Length: 89  Bit Score: 78.07  E-value: 1.02e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 433 VGDIVWAKIYGFPWWPARIltitVSRRDNGLLARQE--ARISWFASPTTSFLALSQLSPFLENFQLRF-NKKRKGLYRRA 509
Cdd:cd05835     2 IGDLVWAKLKGSPWWPGIV----VSHKDCGQKPPAEgsVWVFWFGDHKVSEVPLDKILPFAEFFNKFYiSKNSSKLYKKA 77
                          90
                  ....*....|..
gi 1958658268 510 ITEAAK-AAKQL 520
Cdd:cd05835    78 VYEALKeAAERS 89
PWWP cd05162
PWWP (Pro-Trp-Trp-Pro) domain; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, ...
434-516 1.72e-16

PWWP (Pro-Trp-Trp-Pro) domain; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids and is composed of a five-stranded antiparallel beta-barrel followed by a helical region. It is found in numerous proteins that are involved in cell division, growth, and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. PWWP domains specifically recognize DNA and histone methylated lysines at the level of the nucleosome. Based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.


Pssm-ID: 438958 [Multi-domain]  Cd Length: 86  Bit Score: 74.46  E-value: 1.72e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 434 GDIVWAKIYGFPWWPARILTITVSRRDNGLLAR-QEARISWFASPTTSFLALSQLSPFLENFQLRFNKKRKG--LYRRAI 510
Cdd:cd05162     1 GDLVWAKLKGYPWWPARVVDPEELPEEVGKKKKkGGVLVQFFGDNDYAWVKSKNIKPFEEGFKKEFKKKKKKskKFKKAV 80

                  ....*.
gi 1958658268 511 TEAAKA 516
Cdd:cd05162    81 EEAEEA 86
PWWP pfam00855
PWWP domain; The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. The domain ...
434-518 9.59e-14

PWWP domain; The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. The domain binds to Histone-4 methylated at lysine-20, H4K20me, suggesting that it is methyl-lysine recognition motif. Removal of two conserved aromatic residues in a hydrophobic cavity created by this domain within the full-length protein, Pdp1, abolishes the interaction o f the protein with H4K20me3. In fission yeast, Set9 is the sole enzyme that catalyzes all three states of H4K20me, and Set9-mediated H4K20me is required for efficient recruitment of checkpoint protein Crb2 to sites of DNA damage. The methylation of H4K20 is involved in a diverse array of cellular processes, such as organizing higher-order chromatin, maintaining genome stability, and regulating cell-cycle progression.


Pssm-ID: 459964 [Multi-domain]  Cd Length: 92  Bit Score: 67.07  E-value: 9.59e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 434 GDIVWAKIYGFPWWPARILTITVSRRDNGLLARQEARIS--WFASPTTSFLALSQLSPFLENFQLRF-----NKKRKGLY 506
Cdd:pfam00855   1 GDLVWAKLKGYPWWPARVVDPEELPENVLKPKKKDGEYLvrFFGDSEFAWVKPKDLKPFDEGDEFEYlkkkkKKKKKKAF 80
                          90
                  ....*....|..
gi 1958658268 507 RRAITEAAKAAK 518
Cdd:pfam00855  81 KKALEEAEEALK 92
PWWP_DNMT3A cd20154
PWWP domain found in DNA (cytosine-5)-methyltransferase 3A (DNMT3A); DNMT3A, also called DNA ...
427-517 3.80e-11

PWWP domain found in DNA (cytosine-5)-methyltransferase 3A (DNMT3A); DNMT3A, also called DNA methyltransferase HsaIIIA, DNA MTase HsaIIIA, or M.HsaIIIA, is required for genome-wide de novo methylation and is essential for the establishment of DNA methylation patterns during development. It modifies DNA in a non-processive manner and also methylates non-CpG sites. It may preferentially methylate DNA linker between 2 nucleosomal cores and is inhibited by histone H1. DNMT3A is recruited to trimethylated 'Lys-36' of histone H3 (H3K36me3) sites. It contains a PWWP domain that binds methylated histone.


Pssm-ID: 438982  Cd Length: 134  Bit Score: 60.75  E-value: 3.80e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 427 DGRTICVGDIVWAKIYGFPWWPARILTITVSRRDNGllARQEARISWFASPTTSFLALSQLSPfLENFQLRFNK---KRK 503
Cdd:cd20154     2 DGRGFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRA--AEGTRWVMWFGDGKFSVVCVEKLMP-LSSFSSAFHQatyNKQ 78
                          90
                  ....*....|....
gi 1958658268 504 GLYRRAITEAAKAA 517
Cdd:cd20154    79 PMYRKAIYEVLQVA 92
PWWP_AtATX3-like cd20143
PWWP domain found in Arabidopsis thaliana histone-lysine N-methyltransferase trithorax-like ...
434-518 1.84e-09

PWWP domain found in Arabidopsis thaliana histone-lysine N-methyltransferase trithorax-like protein ATX3, ATX4, ATX5, and similar proteins; The family includes A. thaliana ATX3 (also called protein SET domain group 14, or trithorax-homolog protein 3), ATX4 (also called protein SET domain group 16, or trithorax-homolog protein 4) and ATX5 (also called protein SET domain group 29, or trithorax-homolog protein 5), which belong to the histone-lysine methyltransferase family. They show distinct phylogenetic origins from the family of ATX1 and ATX2. They are multi-domain containing protein that consists of an N-terminal PWWP domain, a canonical plant homeodomain (PHD) domain, a non-canonical extended PHD (ePHD) domain, and a C-terminal SET domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.


Pssm-ID: 438971 [Multi-domain]  Cd Length: 100  Bit Score: 55.07  E-value: 1.84e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 434 GDIVWAKIYGFPWWPARILTI------TVSRRDNGLLArqearISWFASPTT---SFLALSQLSPFLENF-----QLRFN 499
Cdd:cd20143     3 GDLVWAKVGTHPFWPARVVEPaeqaeeVRRRCVPGSLC-----VYFFGPGGSrdyGWVRRSMIFPFTDDLarfqtQKIKN 77
                          90
                  ....*....|....*....
gi 1958658268 500 KKRKGLYRRAITEAAKAAK 518
Cdd:cd20143    78 KKRPQEFQEALEEAKLADA 96
PWWP_HRP cd05834
PWWP domain found in hepatoma-derived growth factor (HDGF)-related protein (HRP) family; The ...
433-505 2.98e-08

PWWP domain found in hepatoma-derived growth factor (HDGF)-related protein (HRP) family; The HRP family includes hepatoma-derived growth factor (HDGF), and HDGF-related proteins (HRPs). HDGF, also called high mobility group protein 1-like 2 (HMG-1L2), is a heparin-binding protein that acts as a transcriptional repressor with mitogenic activity for fibroblasts. It is a prognostic factor in several types of cancer. HDGFL1 is also called PWWP domain-containing protein 1 (PWWP1). Its biological function remains unclear. HDGFL2, also called HDGF-related protein 2 (HRP-2), or hepatoma-derived growth factor 2 (HDGF-2), is involved in cellular growth control, through the regulation of cyclin D1 expression. HDGFL3, also called HDGF-related protein 3 (HRP-3), enhances DNA synthesis and may play a role in cell proliferation. The family also includes PC4 and SFRS1-interacting protein (PSIP) and similar proteins. PSIP, also called CLL-associated antigen KW-7, dense fine speckles 70 kDa protein (DFS 70), lens epithelium-derived growth factor (LEDGF), or transcriptional coactivator p75/p52, acts as a transcriptional coactivator involved in neuroepithelial stem cell differentiation and neurogenesis. Members of the HRP family contains a PWWP domain, which is necessary for DNA binding.


Pssm-ID: 438959 [Multi-domain]  Cd Length: 82  Bit Score: 51.01  E-value: 2.98e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958658268 433 VGDIVWAKIYGFPWWPARILTITvsrrDNGLLARQEARISWFASPTTSFLALSQLSPFLEN-FQLRFNKKRKGL 505
Cdd:cd05834     3 PGDLVFAKVKGYPPWPARIDEIP----EGAKIPKNKYPVFFYGTHETAFLKPKDLFPYEENkEKYGKPRKRKGF 72
PWWP smart00293
domain with conserved PWWP motif; conservation of Pro-Trp-Trp-Pro residues
434-491 5.73e-08

domain with conserved PWWP motif; conservation of Pro-Trp-Trp-Pro residues


Pssm-ID: 214603 [Multi-domain]  Cd Length: 63  Bit Score: 49.65  E-value: 5.73e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958658268  434 GDIVWAKIYGFPWWPARILT-------ITVSRRDNGLLARQearisWFASPTTSFLALSQLSPFL 491
Cdd:smart00293   4 GDLVWAKMKGFPWWPALVISpkmtpdnIMKRKSDENLYPVL-----FFGDKDTAWIPSSKLFPLT 63
PWWP_AtATX1-like cd20142
PWWP domain found in Arabidopsis thaliana histone-lysine N-methyltransferase trithorax-like ...
433-514 1.91e-07

PWWP domain found in Arabidopsis thaliana histone-lysine N-methyltransferase trithorax-like proteins ATX1, ATX2, and similar proteins; This family includes A. thaliana ATX1 and ATX2, which are sister paralogs originating from a segmental chromosomal duplication. They are plant counterparts of the Drosophila melanogaster trithorax (TRX) and mammalian mixed-lineage leukemia (MLL1) proteins. ATX1, also called protein SET domain group 27, or trithorax-homolog protein 1 (TRX-homolog protein 1), is a methyltransferase that trimethylates histone H3 at lysine 4 (H3K4me3). It also acts as a histone modifier and as a positive effector of gene expression. ATX1 regulates transcription from diverse classes of genes implicated in biotic and abiotic stress responses. It is involved in dehydration stress signaling in both abscisic acid (ABA)-dependent and ABA-independent pathways. ATX2, also called protein SET domain group 30, or trithorax-homolog protein 2 (TRX-homolog protein 2), is involved in dimethylating histone H3 at lysine 4 (H3K4me2). Both ATX1 and ATX2 are multi-domain containing proteins that consist of an N-terminal PWWP domain, FYRN- and FYRC (DAST, domain associated with SET in trithorax) domains, a canonical plant homeodomain (PHD) domain, a non-canonical extended PHD (ePHD) domain, and a C-terminal SET domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.


Pssm-ID: 438970 [Multi-domain]  Cd Length: 97  Bit Score: 49.27  E-value: 1.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 433 VGDIVWAKIYGFPWWPARILTITVSRRDNGLLARQEAR----ISWFASPTTSFLALSQLSPFLENFQLRFNKKRK-GLYR 507
Cdd:cd20142     2 PGDVVWAKVKGYPMWPALVIDEEHAERCGLEANRPGKKgtvpVQFFGTYEVARLNPKKVVGFSKGLDLKYHSKCKaPVFR 81

                  ....*..
gi 1958658268 508 RAITEAA 514
Cdd:cd20142    82 QALEEAE 88
PWWP_DNMT3B cd20155
PWWP domain found in DNA (cytosine-5)-methyltransferase 3B (DNMT3B); DNMT3B, also called DNA ...
433-530 1.23e-06

PWWP domain found in DNA (cytosine-5)-methyltransferase 3B (DNMT3B); DNMT3B, also called DNA methyltransferase HsaIIIB, DNA MTase HsaIIIB, or M.HsaIIIB, is required for genome-wide de novo methylation and is essential for the establishment of DNA methylation patterns during development. It may preferentially methylate nucleosomal DNA within the nucleosome core region. DNMT3B may function as a transcriptional co-repressor by associating with CBX4 and independently of DNA methylation. In tumorigenesis, DNA methylation by DNMT3B is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of DNMT3B has been identified in patients with ICF (immunodeficiency, centromeric instability, and facial anomalies) syndrome, a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA.


Pssm-ID: 438983  Cd Length: 117  Bit Score: 47.56  E-value: 1.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 433 VGDIVWAKIYGFPWWPAriltITVSRRDNGllARQEAR----ISWFASPTTSFLALSQLSPfLENFQLRFNK---KRKGL 505
Cdd:cd20155     2 IGELVWGKIKGFSWWPA----MVVSWRATG--KRQASSgmrwLQWFGDGKFSEVSADKLVS-LTAFSQHFNLstyNKLVS 74
                          90       100       110
                  ....*....|....*....|....*....|
gi 1958658268 506 YRRAITEA-----AKAAKQLTPEVRALLTQ 530
Cdd:cd20155    75 YRKAMYHAlevarVRAGKTFPSSPGESLED 104
PWWP_NSD_rpt2 cd05838
second PWWP domain found in nuclear receptor-binding SET domain-containing (NSD) proteins; The ...
433-452 4.49e-06

second PWWP domain found in nuclear receptor-binding SET domain-containing (NSD) proteins; The nuclear receptor binding SET domain (NSD) protein family consists of three HMTases, NSD1, NSD2/MMSET/WHSC1, and NSD3/WHSC1L1, that are critical in maintaining chromatin integrity. Reducing NSD activity through specific lysine-HMTase inhibitors appears promising in suppressing cancer growth. NSD proteins have specific mono- and dimethylase activities for H3K36, and they play nonredundant roles during development. NSD1 plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. NSD2 is involved in cancer cell proliferation, survival, and tumor growth, by mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. NSD3 is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD proteins contain a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (C5HCH). This model corresponds to the second PWWP domain. The family also includes Drosophila melanogaster maternal-effect sterile 4 (dMes4) that may act as a histone-lysine N-methyltransferase required for wing morphogenesis. The PWWP domain specifically recognizes DNA and histone methylated lysines.


Pssm-ID: 438963 [Multi-domain]  Cd Length: 96  Bit Score: 45.31  E-value: 4.49e-06
                          10        20
                  ....*....|....*....|
gi 1958658268 433 VGDIVWAKIYGFPWWPARIL 452
Cdd:cd05838     2 YGDIVWVKLGNYRWWPAEIL 21
PWWP_NSD_rpt1 cd20144
first PWWP domain found in nuclear receptor-binding SET domain-containing (NSD) proteins; The ...
433-526 5.55e-06

first PWWP domain found in nuclear receptor-binding SET domain-containing (NSD) proteins; The nuclear receptor binding SET domain (NSD) protein family consists of three HMTases, NSD1, NSD2/MMSET/WHSC1, and NSD3/WHSC1L1 that are critical in maintaining the chromatin integrity. Reducing NSD activity through specific lysine-HMTase inhibitors appears promising in suppressing cancer growth. NSD proteins have specific mono- and dimethylase activities for H3K36, and play nonredundant roles during development. NSD1 plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. NSD2 is involved in cancer cell proliferation, survival, and tumor growth, through mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. NSD3 is amplified in human breast cancer cell lines. Moreover, translocation resulting in NUP98 fusion to NSD3 leads to the development of acute myeloid leukemia. NSD proteins contain a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (C5HCH). This model corresponds to the first PWWP domain. This family also includes Drosophila melanogaster maternal-effect sterile 4 (dMes4) that may act as a histone-lysine N-methyltransferase required for wing morphogenesis. The PWWP domain specifically recognizes DNA and histone methylated lysines.


Pssm-ID: 438972  Cd Length: 114  Bit Score: 45.38  E-value: 5.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 433 VGDIVWAKIYGFPWWPARILT------ITVSRRDNGLLARQ--------EARISWFASpttsflalSQLSPF--LENFQL 496
Cdd:cd20144     1 VGDLVWAKVSGHPWWPCMVTYdpesglYTKIKGSGGRTYRQyhvqffgdNGERGWVSE--------KSLMPFegKEKFEE 72
                          90       100       110
                  ....*....|....*....|....*....|
gi 1958658268 497 RFNKKRKGLYRRaiTEAAKAAKQLTPEVRA 526
Cdd:cd20144    73 LVKELKKKAKKK--SKKAKLEKKVKPSRRK 100
PWWP_ZCWPW1 cd20145
PWWP domain found in zinc finger CW-type PWWP domain protein 1 (ZCWPW1) and similar proteins; ...
432-449 6.05e-06

PWWP domain found in zinc finger CW-type PWWP domain protein 1 (ZCWPW1) and similar proteins; ZCWPW1 is a histone H3K4me3 reader. It is associated with late-onset Alzheimer's disease (LOAD). In addition to the PWWP domain, ZCWPW1 contains a zinc finger CW (zf-CW) domain that is a histone modification reader for the histone H3 tail with trimethylated K4. The PWWP domain specifically recognizes DNA and histone methylated lysines.


Pssm-ID: 438973  Cd Length: 115  Bit Score: 45.23  E-value: 6.05e-06
                          10
                  ....*....|....*...
gi 1958658268 432 CVGDIVWAKIYGFPWWPA 449
Cdd:cd20145     7 TPGSLVWAKMPGYPWWPA 24
PWWP_HDGFL2 cd20149
PWWP domain found in Hepatoma-derived growth factor-related protein 2 (HDGFL2); HDGFL2, also ...
434-505 8.16e-06

PWWP domain found in Hepatoma-derived growth factor-related protein 2 (HDGFL2); HDGFL2, also called HDGF-related protein 2 (HRP-2), or Hepatoma-derived growth factor 2 (HDGF-2), is involved in cellular growth control, through the regulation of cyclin D1 expression. It contains a PWWP domain, which is necessary for DNA binding.


Pssm-ID: 438977 [Multi-domain]  Cd Length: 84  Bit Score: 44.12  E-value: 8.16e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958658268 434 GDIVWAKIYGFPWWPARILTItvsrrDNGLLARQEAR--ISWFASPTTSFLALSQLSPFlENFQLRFNK--KRKGL 505
Cdd:cd20149     4 GDLVFAKMKGYPHWPARIDDI-----ADGAVKPPPNKypIFFFGTHETAFLGPKDLFPY-DKYKDKYGKpnKRKGF 73
PWWP_MSH6 cd05837
PWWP domain found in DNA mismatch repair protein MSH6 and similar proteins; MSH6, also called ...
433-528 1.61e-05

PWWP domain found in DNA mismatch repair protein MSH6 and similar proteins; MSH6, also called G/T mismatch-binding protein (GTBP or GTMBP), MutS protein homolog 6, or MutS-alpha 160 kDa subunit (p160), is a mismatch repair protein homologous to bacterial MutS. It is a component of the post-replicative DNA mismatch repair system (MMR). It heterodimerizes with MSH2 to form MutS alpha, which binds to DNA mismatches thereby initiating DNA repair. When bound, MutS alpha bends the DNA helix and shields approximately 20 base pairs, and recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. After mismatch binding, it forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. MSH6 contains a PWWP domain, but its role in MSH6 remains unclear. MSH6 orthologs found in Saccharomyces cerevisiae, Caenorhabditis elegans, and Arabidopsis thaliana lack the PWWP domain. PWWP domains typically recognize DNA and histone methylated lysines.


Pssm-ID: 438962  Cd Length: 103  Bit Score: 43.81  E-value: 1.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 433 VGDIVWAKIYGFPWWPARILTITVSRRDNGLLARQEARISWFASPTT-SFLALSQLSPFLENFQLRFNKK-----RKGLY 506
Cdd:cd05837     3 PGDLVWAKLEGYPWWPSLVCNHPTTGFHKKFGKKGEVHVQFFDDPPSrAWVKAKNVKPFTGSDDKEFQKGgmffsKDPKW 82
                          90       100
                  ....*....|....*....|..
gi 1958658268 507 RRAITEAAKAAKqLTPEVRALL 528
Cdd:cd05837    83 KKAVKEADKALK-LSVEERLKL 103
PWWP_GLYR1 cd05836
PWWP domain found in glyoxylate reductase 1 (GLYR1) and similar proteins; GLYR1, also called ...
433-516 2.10e-05

PWWP domain found in glyoxylate reductase 1 (GLYR1) and similar proteins; GLYR1, also called 3-hydroxyisobutyrate dehydrogenase-like protein, cytokine-like nuclear factor N-PAC, nuclear protein NP60, or nuclear protein of 60 kDa, is a putative oxidoreductase that is recruited on chromatin and promotes KDM1B demethylase activity. It recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3). GLYR1 enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In addition to the PWWP domain, GLYR1 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.


Pssm-ID: 438961 [Multi-domain]  Cd Length: 86  Bit Score: 42.98  E-value: 2.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 433 VGDIVWAKIYGFPWWPARiltITVSRRDNGLLARQEAR--ISWFASPTTSFLALSQLSPFLEnFQLRFNKKRKG-LYRRA 509
Cdd:cd05836     3 IGDLVWAKMKGFPPWPGK---IVNPPPDLKKPPRKKKMhcVYFFGSENYAWIEDENIKPYEE-FKEEMLKSKKSaGFKDA 78

                  ....*..
gi 1958658268 510 ITEAAKA 516
Cdd:cd05836    79 VEAIEEY 85
PWWP_MBD5 cd20141
PWWP domain found in methyl-CpG-binding domain protein 5 (MBD5) and similar proteins; MBD5, is ...
433-513 2.20e-05

PWWP domain found in methyl-CpG-binding domain protein 5 (MBD5) and similar proteins; MBD5, is a methyl-CpG-binding protein that binds to heterochromatin. It does not interact with either methylated or unmethylated DNA. MBD5 acts as a transcriptional regulator responsible for 2q23.1 deletion syndrome. It belongs to the MBD family proteins, which play central roles in transcriptional regulation and development. The PWWP domain specifically recognizes DNA and histone methylated lysines.


Pssm-ID: 438969  Cd Length: 92  Bit Score: 43.07  E-value: 2.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 433 VGDIVWAKIYGFPWWPARIltitVSRRDNGLLARQEARISWFASPTTSFLALSQLSPF---LENFQLRFNKKRKGLYR-- 507
Cdd:cd20141     3 VGDLVWGQIRGFPSWPGKL----VSENDVGKTNEGKVWVSWFGDHSFGQVEPDKLKTLsegLEAHHRARKRTRKGRKLnn 78

                  ....*....
gi 1958658268 508 ---RAITEA 513
Cdd:cd20141    79 hleAAIQEA 87
PWWP_ZCWPW2 cd20146
PWWP domain found in zinc finger CW-type PWWP domain protein 2 (ZCWPW2) and similar proteins; ...
433-525 2.42e-05

PWWP domain found in zinc finger CW-type PWWP domain protein 2 (ZCWPW2) and similar proteins; ZCWPW2 is a histone H3K4me3 reader. In addition to the PWWP domain, ZCWPW2 contains a zinc finger CW (zf-CW) domain that is a histone modification reader for the histone H3 tail with trimethylated K4. The PWWP domain specifically recognizes DNA and histone methylated lysines.


Pssm-ID: 438974  Cd Length: 113  Bit Score: 43.44  E-value: 2.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 433 VGDIVWAKIYGFPWWPArILT---ITVSRRDNGL-----------LARQEARiSWFASpttSFLALSQLSPFLENFQLRF 498
Cdd:cd20146    11 LGSLVWAKMTGYPRWPA-ILTpdpICGEYVDYDEdgevekyhvefLGKPHSH-AWISA---KSVEPYNSNTKTPKCKTKK 85
                          90       100
                  ....*....|....*....|....*..
gi 1958658268 499 NKKRKGLYRRAITEAAKaAKQLTPEVR 525
Cdd:cd20146    86 SKKRKKSYESALEEAER-LLKLTCEER 111
PWWP_HDGF cd20148
PWWP domain found in Hepatoma-derived growth factor (HDGF); HDGF, also called high mobility ...
434-505 4.47e-05

PWWP domain found in Hepatoma-derived growth factor (HDGF); HDGF, also called high mobility group protein 1-like 2 (HMG-1L2), is a heparin-binding protein that acts as a transcriptional repressor with mitogenic activity for fibroblasts. It contains a PWWP domain, which is necessary for DNA binding.


Pssm-ID: 438976 [Multi-domain]  Cd Length: 87  Bit Score: 42.32  E-value: 4.47e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958658268 434 GDIVWAKIYGFPWWPARILTITvsrRDNGLLARQEARISWFASPTTSFLALSQLSPFlENFQLRFNK--KRKGL 505
Cdd:cd20148     4 GDLVFAKMKGYPHWPARIDEMP---EAAVKSTANKYQVFFFGTHETAFLGPKDLFPY-EESKEKFGKpnKRKGF 73
PWWP_BRPF cd05839
PWWP domain found in the bromodomain and PHD finger-containing (BRPF) protein family; The BRPF ...
431-451 6.49e-05

PWWP domain found in the bromodomain and PHD finger-containing (BRPF) protein family; The BRPF family of proteins includes BRPF1, BRD1/BRPF2, and BRPF3. They are scaffold proteins that form monocytic leukemic zinc-finger protein (MOZ)/MOZ-related factor (MORF) H3 histone acetyltransferase (HAT) complexes with other regulatory subunits, such as inhibitor of growth 5 (ING5) and Esa1-associated factor 6 ortholog (EAF6). BRPF proteins have multiple domains, including a plant homeodomain (PHD) zinc finger followed by a non-canonical extended PHD (ePHD) finger, C2HC5HC2H, a bromodomain, and a proline-tryptophan-tryptophan-proline (PWWP) domain. The PHD finger binds to lysine 4 of histone H3 (K4H3), the bromodomain interacts with acetylated lysines on N-terminal tails of histones and other proteins, and the PWWP domain shows histone-binding and chromatin association properties.


Pssm-ID: 438964  Cd Length: 106  Bit Score: 42.25  E-value: 6.49e-05
                          10        20
                  ....*....|....*....|.
gi 1958658268 431 ICVGDIVWAKIYGFPWWPARI 451
Cdd:cd05839     1 LEPGDLVWAKCRGYPWYPAEI 21
PWWP_PSIP cd20151
PWWP domain found in PC4 and SFRS1-interacting protein (PSIP); PSIP, also called ...
434-505 2.68e-04

PWWP domain found in PC4 and SFRS1-interacting protein (PSIP); PSIP, also called CLL-associated antigen KW-7, dense fine speckles 70 kDa protein (DFS 70), lens epithelium-derived growth factor (LEDGF), or transcriptional coactivator p75/p52, acts as a transcriptional coactivator involved in neuroepithelial stem cell differentiation and neurogenesis. It contains a PWWP domain, which is necessary for DNA binding.


Pssm-ID: 438979 [Multi-domain]  Cd Length: 88  Bit Score: 39.97  E-value: 2.68e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958658268 434 GDIVWAKIYGFPWWPARILTI---TVSRRDNGLlarqeaRISWFASPTTSFLALSQLSPFLENfQLRFNK--KRKGL 505
Cdd:cd20151     4 GDLIFAKMKGYPHWPARVDEVpdgAVKPPTNKL------PIFFFGTHETAFLGPKDIFPYSEN-KEKYGKpnKRKGF 73
PWWP_NSD2_rpt1 cd20162
first PWWP domain found in nuclear SET domain-containing protein 2 (NSD2) and similar proteins; ...
433-451 8.40e-04

first PWWP domain found in nuclear SET domain-containing protein 2 (NSD2) and similar proteins; NSD2, also called histone-lysine N-methyltransferase NSD2, multiple myeloma SET domain-containing protein (MMSET), or protein trithorax-5 Wolf-Hirschhorn syndrome candidate 1 protein (WHSC1), is overexpressed frequently in the t(4;14) translocation in 15% to 20% of multiple myeloma. It plays important roles in cancer cell proliferation, survival, and tumor growth, through mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. It also enhances androgen receptor (AR)-mediated transcription. The principal chromatin-regulatory activity of NSD2 is dimethylation of histone H3 at lysine 36 (H3K36me2). NSD2 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-prolin motif (PWWP) domains, a high mobility group (HMG) box, five PHD (plant-homeodomain) zinc finger motifs, and an NSD-specific Cys-His rich domain (C5HCH). The SET domain is responsible for histone methyltransferase activity. The PWWP, HMG, and PHD domains mediate chromatin interaction and recognition of histone marks. This model corresponds to the first PWWP domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.


Pssm-ID: 438990  Cd Length: 128  Bit Score: 39.51  E-value: 8.40e-04
                          10
                  ....*....|....*....
gi 1958658268 433 VGDIVWAKIYGFPWWPARI 451
Cdd:cd20162     3 VGDLVWSKVSGYPWWPCMV 21
PWWP_PRKCBP1 cd20160
PWWP domain found in protein kinase C-binding protein 1 (PRKCBP1) and similar proteins; ...
436-513 1.22e-03

PWWP domain found in protein kinase C-binding protein 1 (PRKCBP1) and similar proteins; PRKCBP1, also called cutaneous T-cell lymphoma-associated antigen se14-3 (CTCL-associated antigen se14-3), Rack7, or zinc finger MYND domain-containing protein 8 (ZMYND8), is a novel receptor for activated C-kinase (RACK)-like protein that may play an important role in the activation and regulation of PKC-beta I, and the PKC signaling cascade. It also has been identified as a formin homology-2-domain containing protein 1 (FHOD1)-binding protein that may be involved in FHOD1-regulated actin polymerization and transcription. Moreover, PRKCBP1 may function as a REST co-repressor 2 (RCOR2) interacting factor. They form a RCOR2/ZMYND8 complex which might be involved in the regulation of neural differentiation. PRKCBP1 contains a plant homeodomain (PHD) finger, a bromodomain, and a proline-tryptophan-tryptophan-proline (PWWP) domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.


Pssm-ID: 438988  Cd Length: 91  Bit Score: 37.93  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 436 IVWAKIYGFPWWPARILtitvsRRDNGLLarqEAR------ISWFasPTTSFLALSQLSPFLEnfqlrfnKKRKGLYRRA 509
Cdd:cd20160     9 LVWAKLKGFPFWPAKAL-----RVNNGQV---DVRffgahdRAWV--PVKDCYLYSKEPPTSV-------KKKKSGLDEA 71

                  ....
gi 1958658268 510 ITEA 513
Cdd:cd20160    72 MEEL 75
PWWP_HDGFL3 cd20150
PWWP domain found in Hepatoma-derived growth factor-related protein 3 (HDGFL3); HDGFL3, also ...
426-505 1.48e-03

PWWP domain found in Hepatoma-derived growth factor-related protein 3 (HDGFL3); HDGFL3, also called HDGF-related protein 3 (HRP-3), is the only hepatoma-derived growth factor (HDGF)-related protein (HRP) family member whose expression is almost restricted to the nervous tissue. It enhances DNA synthesis and may play a role in cell proliferation. It contains a PWWP domain, which is necessary for DNA binding.


Pssm-ID: 438978 [Multi-domain]  Cd Length: 93  Bit Score: 38.12  E-value: 1.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 426 PDGRTICVGDIVWAKIYGFPWWPARIltitvSRRDNGLLARQEAR--ISWFASPTTSFLALSQLSPFlENFQLRFNK--K 501
Cdd:cd20150     1 PRPREYKAGDLVFAKMKGYPHWPARI-----DELPEGAVKPPANKypIFFFGTHETAFLGPKDLFPY-KEYKDKFGKsnK 74

                  ....
gi 1958658268 502 RKGL 505
Cdd:cd20150    75 RKGF 78
PWWP_ScIOC4-like cd05840
PWWP domain found in Saccharomyces cerevisiae ISWI one complex protein 4 (ScIOC4) and similar ...
434-453 1.79e-03

PWWP domain found in Saccharomyces cerevisiae ISWI one complex protein 4 (ScIOC4) and similar proteins; ScIOC4 functions as a component of the ISW1B complex, which acts in remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. The ISW1B complex acts within coding regions to control the amount of RNA polymerase II released into productive elongation and to coordinate elongation with termination and pre-mRNA processing. The family also includes Schizosaccharomyces pombe PWWP domain-containing proteins 1 and 2 (SpPDP1 and SpPDP2). SpPDP1 associates with Set9 to regulate its chromatin localization and methyltransferase activity towards H4K20. Members of this family contain a PWWP domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.


Pssm-ID: 438965  Cd Length: 94  Bit Score: 37.67  E-value: 1.79e-03
                          10        20
                  ....*....|....*....|
gi 1958658268 434 GDIVWAKIYGFPWWPARILT 453
Cdd:cd05840     1 GDLVLAKVKGYPPWPAMVLP 20
PWWP_NSD1_rpt2 cd20164
second PWWP domain found in nuclear receptor-binding SET domain-containing protein 1 (NSD1) ...
435-520 4.78e-03

second PWWP domain found in nuclear receptor-binding SET domain-containing protein 1 (NSD1) and similar proteins; NSD1, also called H3 Lysine-36 and H4 Lysine-20 specific histone-lysine N-methyltransferase, androgen receptor coactivator 267 kDa protein, androgen receptor-associated protein of 267 kDa, H3-K36-HMTase H4-K20-HMTase, Lysine N-methyltransferase 3B (KMT3B), or NR-binding SET domain-containing protein, is a lysine methyltransferase that preferentially methylates H3 on Lysine36 (H3-K36) and H4 on Lysine20 (H4-K20), which is primarily associated with active transcription. It plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. It can alter transcription by interacting with the protein NSD1-interacting zinc finger protein 1 (NIZP1). It also mitigates caspase-1 activation by listeriolysin o (LLO) in macrophages, and requires functional LLO for the regulation of IL-1beta secretion. Moreover, NSD1 regulates RNA polymerase II (RNAP II) recruitment to bone morphogenetic protein 4 (BMP4). NSD1 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (C5HCH). The SET domain is responsible for histone methyltransferase activity. The PWWP and PHD domains are involved in protein-protein interactions. This model corresponds to the second PWWP domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.


Pssm-ID: 438992  Cd Length: 96  Bit Score: 36.78  E-value: 4.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958658268 435 DIVWAKIYGFPWWPARI-------LTITVSRRDNGllarqEARISWFASPTTSFLALSQLSPFLENFQLRFNKKRKGL-- 505
Cdd:cd20164     4 EVVWVKVGRYRWWPAEVchpksipTNIQKMKHDIG-----EFPVLFFGSNDYLWTHQARVFPYMEGDVSSKDKMGKGVdg 78
                          90
                  ....*....|....*.
gi 1958658268 506 -YRRAITEAAKAAKQL 520
Cdd:cd20164    79 tYKKALQEAAVRFEEL 94
PWWP_NSD1_rpt1 cd20161
first PWWP domain found in nuclear receptor-binding SET domain-containing protein 1 (NSD1) and ...
433-454 5.00e-03

first PWWP domain found in nuclear receptor-binding SET domain-containing protein 1 (NSD1) and similar proteins; NSD1, also called H3 Lysine-36 and H4 Lysine-20 specific histone-lysine N-methyltransferase, androgen receptor coactivator 267 kDa protein, androgen receptor-associated protein of 267 kDa, H3-K36-HMTase H4-K20-HMTase, Lysine N-methyltransferase 3B (KMT3B), or NR-binding SET domain-containing protein, is a lysine methyltransferase that preferentially methylates H3 on Lysine36 (H3-K36) and H4 on Lysine20 (H4-K20), which is primarily associated with active transcription. It plays a role in several pathologies, including but not limited to Sotos and Weaver syndromes, acute myeloid leukemia, breast cancer, neuroblastoma, and glioblastoma formation. It can alter transcription by interacting with the protein NSD1-interacting zinc finger protein 1 (NIZP1). It also mitigates caspase-1 activation by listeriolysin o (LLO) in macrophages, and requires functional LLO for the regulation of IL-1beta secretion. Moreover, NSD1 regulates RNA polymerase II (RNAP II) recruitment to bone morphogenetic protein 4 (BMP4). NSD1 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-proline (PWWP) domains, five plant homeodomain (PHD) fingers, and an NSD-specific Cys-His rich domain (C5HCH). The SET domain is responsible for histone methyltransferase activity. The PWWP and PHD domains are involved in protein-protein interactions. The model corresponds to the first PWWP domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.


Pssm-ID: 438989  Cd Length: 116  Bit Score: 37.07  E-value: 5.00e-03
                          10        20
                  ....*....|....*....|..
gi 1958658268 433 VGDIVWAKIYGFPWWPARILTI 454
Cdd:cd20161     6 VGDLVWAKFSRRPWWPCRICAD 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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