|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
523-1022 |
2.73e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 97.31 E-value: 2.73e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 523 RLKLELEEKKQAMVLLQRALAQQRdlATRRVKETEKELSRQ----LRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEA 598
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELE--AELAELEAELEELRLeleeLELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 599 VVAELKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLR 678
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 679 GLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLytEVAEEKERLGQQ 758
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE--ALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 759 AARQRVELEELRQQLEE--SSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTREREL 836
Cdd:COG1196 472 AALLEAALAELLEELAEaaARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 837 KEEIRKGRDQEIE-LVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKER 915
Cdd:COG1196 552 VVEDDEVAAAAIEyLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 916 LQSLLRQKEKELDDLRVVNTQMcsERASLAQVVRQEFAEQLAASQEETQRVKAELAELRARQQMELDEVHRRVKTALARK 995
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEG--EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500
....*....|....*....|....*..
gi 1958659903 996 EAAVNSLRKQHEAAEKRADHLEELLEQ 1022
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREE 736
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
524-1022 |
1.12e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 95.00 E-value: 1.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 524 LKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAEL 603
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 604 KQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREkwinEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEA 683
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEEL----EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 684 ELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQhLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQR 763
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER-LEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 764 VELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKG 843
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 844 RDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSEL-------EQSERKLQERCTELKGRLGEAEGEKERL 916
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLpldkiraRAALAAALARGAIGAAVDLVASDLREAD 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 917 QSLLRQKEKELDDLRVVNTQMC-----SERASLAQVVRQEFAEQLAASQEETQRVKAELAELRARQQMELDEVHRRVKTA 991
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAARLEAalrraVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
490 500 510
....*....|....*....|....*....|.
gi 1958659903 992 LARKEAAVNSLRKQHEAAEKRADHLEELLEQ 1022
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEE 723
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
671-1023 |
3.03e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 3.03e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 671 KQEVRRLRglHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYtEVAE 750
Cdd:COG1196 219 KEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY-ELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 751 EKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQerrhqmELKALKDQLEAERQAWVASCAKKEEAwLL 830
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE------ELEEELEEAEEELEEAEAELAEAEEA-LL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 831 TRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAE 910
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 911 GEKERLQSLLRQKEKELDDLRVVNTQmcseraslaqvVRQEFAEQLAASQEETQRVKAELAELRARQQMELDEVHRRVKT 990
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAAL-----------LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLA 517
|
330 340 350
....*....|....*....|....*....|...
gi 1958659903 991 ALARKEAAVNSLRKQHEAAEKRADHLEELLEQH 1023
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAALEAALAAALQN 550
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
529-1023 |
8.35e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.78 E-value: 8.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 529 EEKKQAMVLLQRALAQQRDLATRRVKETEK--ELSRQLRQQKEQYEATIQRhlsfidqlIEDKKVLSEKCEAVVAELKQG 606
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKadEAKKKAEEAKKKADAAKKK--------AEEAKKAAEAAKAEAEAAADE 1358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 607 DQRCRERVAQVQEQHELEIKKLKELMSATEKIRR----EKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRlrglhE 682
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKadeaKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK-----A 1433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 683 AELQQREEQAaqRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRrlyTEVAEEKERLGQQAARQ 762
Cdd:PTZ00121 1434 DEAKKKAEEA--KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK---AEEAKKKADEAKKAAEA 1508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 763 RVELEELRQQLEESSA-ALTRALRAEFERSREEQERRHQM-ELKALKDQLEAERQAWVASCAKKEEAWLLTRERelKEEI 840
Cdd:PTZ00121 1509 KKKADEAKKAEEAKKAdEAKKAEEAKKADEAKKAEEKKKAdELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK--AEEA 1586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 841 RKGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVR-DKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSL 919
Cdd:PTZ00121 1587 KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 920 LRQKEKElddlrvvntQMCSERASLAQVVRQEFAEQLAASQEETQRV----KAELAELRARQQMELDEVHRRVKTALARK 995
Cdd:PTZ00121 1667 AKKAEED---------KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAeelkKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
|
490 500
....*....|....*....|....*...
gi 1958659903 996 EAAvnslRKQHEAAEKRADHLEELLEQH 1023
Cdd:PTZ00121 1738 EAE----EDKKKAEEAKKDEEEKKKIAH 1761
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
512-976 |
1.20e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 1.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 512 ELGSEGTTSVMRLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEK--ELSRQLRQQKEQYEATIQRHLSFIDQLIEDK 589
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEleELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 590 KVLSEKCEAVVAELKQGDQRCRERVAQVQEQHELEiKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAK 669
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELE-EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 670 HKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQR----------ALEQ 739
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLaglrglagavAVLI 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 740 QRRRLYTEVAEEKE--RLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAW 817
Cdd:COG1196 531 GVEAAYEAALEAALaaALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 818 VASCAKK----------EEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSE 887
Cdd:COG1196 611 ADARYYVlgdtllgrtlVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 888 LEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRvvntQMCSERASLAQVVRQEFAEQLAASQEETQRVK 967
Cdd:COG1196 691 EELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER----EELLEELLEEEELLEEEALEELPEPPDLEELE 766
|
....*....
gi 1958659903 968 AELAELRAR 976
Cdd:COG1196 767 RELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
718-1027 |
2.41e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 2.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 718 ERERAQQRLEQHLEQEQR--ALEQQRRRL--------YTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAE 787
Cdd:TIGR02168 197 ELERQLKSLERQAEKAERykELKAELRELelallvlrLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 788 FERSREEQERRH-QMELKALKDQLEAERQAwvascAKKEEAWLLTRERELKEEIRKGRDQEIEL--VIHRLEADMTLAKE 864
Cdd:TIGR02168 277 SELEEEIEELQKeLYALANEISRLEQQKQI-----LRERLANLERQLEELEAQLEELESKLDELaeELAELEEKLEELKE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 865 ESErAAENRVKRVRDKYEtelsELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRvvntqmcSERASL 944
Cdd:TIGR02168 352 ELE-SLEAELEELEAELE----ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE-------DRRERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 945 AQVVRQEFAEQLAASQEETQRVKAELAELRARQQMELDEVHRRVKTA---LARKEAAVNSLRKQHEAAEKRADHLEELLE 1021
Cdd:TIGR02168 420 QQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELreeLEEAEQALDAAERELAQLQARLDSLERLQE 499
|
....*.
gi 1958659903 1022 QHKGPS 1027
Cdd:TIGR02168 500 NLEGFS 505
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
274-940 |
5.74e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.09 E-value: 5.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 274 RQEEAARKKAREEKARQARQAAiqelQQKRAQKAREVEHRPPKERPETRALEQPRPTQEPPSMPSSVTHPKANNAGASLY 353
Cdd:PTZ00121 1200 RKAEAARKAEEERKAEEARKAE----DAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE 1275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 354 PTGPADPCPPASEsfperqpslEDKPQDAHSQVEAREdlAALASTRSKTRARATLDDLLDTLKLLEEEPEPLLHPKAYRQ 433
Cdd:PTZ00121 1276 EARKADELKKAEE---------KKKADEAKKAEEKKK--ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 434 DRYAWMDEEEdtnplTADNLEKFGKLSAApgppdDGTLLSEAKLQSimtflDEMEKSGQE-RPAPWRESLVLEAGPRSLE 512
Cdd:PTZ00121 1345 AEAAKAEAEA-----AADEAEAAEEKAEA-----AEKKKEEAKKKA-----DAAKKKAEEkKKADEAKKKAEEDKKKADE 1409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 513 L--GSEGTTSVMRLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATiqrhlsfidqliEDKK 590
Cdd:PTZ00121 1410 LkkAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD------------EAKK 1477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 591 VLSEKCEAvvAELKQGDQRCRERVAQVQEQHElEIKKLKELMSATEKIRREKWINEKTKKiKEITVRGLEPEIQKLIAKH 670
Cdd:PTZ00121 1478 KAEEAKKA--DEAKKKAEEAKKKADEAKKAAE-AKKKADEAKKAEEAKKADEAKKAEEAK-KADEAKKAEEKKKADELKK 1553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 671 KQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAE 750
Cdd:PTZ00121 1554 AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 751 EKERLGQQAARQRVELEELRQQLEESSAaltralraefersreeqeRRHQMELKALKDQLEAERqawvascAKKEEawll 830
Cdd:PTZ00121 1634 KVEQLKKKEAEEKKKAEELKKAEEENKI------------------KAAEEAKKAEEDKKKAEE-------AKKAE---- 1684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 831 trerelkEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKgrlgEAE 910
Cdd:PTZ00121 1685 -------EDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK----KDE 1753
|
650 660 670
....*....|....*....|....*....|
gi 1958659903 911 GEKERLQSLLRQKEKELDDLRVVNTQMCSE 940
Cdd:PTZ00121 1754 EEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
525-1024 |
1.08e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.32 E-value: 1.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 525 KLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAvvAELK 604
Cdd:PTZ00121 1244 KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA--DEAK 1321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 605 QGDQRCRERVAQVQEQHElEIKKLKELMSATEKIRREKWinEKTKKIKEITVRGLEPEIQKLIAKhKQEVRRLRGLHEAE 684
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAE-EAKKAAEAAKAEAEAAADEA--EAAEEKAEAAEKKKEEAKKKADAA-KKKAEEKKKADEAK 1397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 685 LQQREEQAAQRHLRQAEELREHLEREREalgQQERERAQQRLEQHLEQEQRALEQQRRrlyTEVAEEKERLGQQAARQRv 764
Cdd:PTZ00121 1398 KKAEEDKKKADELKKAAAAKKKADEAKK---KAEEKKKADEAKKKAEEAKKADEAKKK---AEEAKKAEEAKKKAEEAK- 1470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 765 ELEELRQQLEESSAAlTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGR 844
Cdd:PTZ00121 1471 KADEAKKKAEEAKKA-DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 845 DQEIELVIHRLEAdmtLAKEESERAAENRVKRVRDKYEtelsELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKE 924
Cdd:PTZ00121 1550 ELKKAEELKKAEE---KKKAEEAKKAEEDKNMALRKAE----EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA 1622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 925 KELDDLRVVNTQMCSERASLAQVVRQefAEQLAASQEETQRVKAELA------ELRARQQMELDEVHRRVKTALARKEA- 997
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKKEAEEKKK--AEELKKAEEENKIKAAEEAkkaeedKKKAEEAKKAEEDEKKAAEALKKEAEe 1700
|
490 500
....*....|....*....|....*....
gi 1958659903 998 --AVNSLRKQHEAAEKRADHLEELLEQHK 1024
Cdd:PTZ00121 1701 akKAEELKKKEAEEKKKAEELKKAEEENK 1729
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
719-1022 |
3.73e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 3.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 719 RERAQQRLE---QHLEQEQRALEQQRRRLytevaeekERLGQQA--ARQRVELEELRQQLEESSAALTRAlraefersre 793
Cdd:COG1196 174 KEEAERKLEateENLERLEDILGELERQL--------EPLERQAekAERYRELKEELKELEAELLLLKLR---------- 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 794 eqerrhqmELKALKDQLEAERQAwvascAKKEEAWLLTRERELKEEIRKGRDQEIELvihRLEADMTLAKEESERAAENR 873
Cdd:COG1196 236 --------ELEAELEELEAELEE-----LEAELEELEAELAELEAELEELRLELEEL---ELELEEAQAEEYELLAELAR 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 874 VKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQvVRQEFA 953
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA-ELAEAE 378
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958659903 954 EQLAASQEETQRVKAELAELRARQQmELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQ 1022
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLE-ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
713-1005 |
4.68e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 4.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 713 ALGQQERERAQQRLEQHLEQEQRALEQQRRRLyTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSR 792
Cdd:TIGR02168 669 NSSILERRREIEELEEKIEELEEKIAELEKAL-AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 793 EEQERRHQM-----ELKALKDQLEAERQAWVASCAKKE--EAWLLTRERELKEEIRKGRDQEIELVIHRLEA-------- 857
Cdd:TIGR02168 748 RIAQLSKELteleaEIEELEERLEEAEEELAEAEAEIEelEAQIEQLKEELKALREALDELRAELTLLNEEAanlrerle 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 858 DMTLAKEESERAAENRVKRVRDKYEtELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQM 937
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSE-DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958659903 938 cSERASLAQVVRQEFAEQLAASQEETQRVKAELAE----LRARQQMELDEV---HRRVKTALARKEAAVNSLRKQ 1005
Cdd:TIGR02168 907 -ESKRSELRRELEELREKLAQLELRLEGLEVRIDNlqerLSEEYSLTLEEAealENKIEDDEEEARRRLKRLENK 980
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
274-890 |
5.11e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 5.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 274 RQEEAARKKAREEKARQARQAAIQELQQKRAQKAREVEHRPPKERPETRALEQPRPTQE---PPSMPSSVTHPKANNAGA 350
Cdd:PTZ00121 1230 KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEkkkADEAKKAEEKKKADEAKK 1309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 351 SLYPTGPADPCPPASESFPERQPSLEDKPQDAHSQVEAREDLAALASTRSKTRARATLDDLLDTLKLLEEEPEPLLHPKA 430
Cdd:PTZ00121 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 431 YRQDRYAWMDEEEDTNpltadNLEKFGKLSAAPGPPDDGTLLSEAKLQSimtflDEMEKSGQERPAPWRESLVLEAGPRS 510
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKK-----KADELKKAAAAKKKADEAKKKAEEKKKA-----DEAKKKAEEAKKADEAKKKAEEAKKA 1459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 511 LELG--SEGTTSVMRLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIED 588
Cdd:PTZ00121 1460 EEAKkkAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 589 KKVLS-EKCEAV--VAELKQGDQ-RCRERVAQVQEQHELEIKKLKELMSATEK-IRREKWINEKTKKIKEITVRGLEPEI 663
Cdd:PTZ00121 1540 KKAEEkKKADELkkAEELKKAEEkKKAEEAKKAEEDKNMALRKAEEAKKAEEArIEEVMKLYEEEKKMKAEEAKKAEEAK 1619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 664 QKLIAKHKQEVRRlRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQrLEQHLEQEQRALEQQRRR 743
Cdd:PTZ00121 1620 IKAEELKKAEEEK-KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE-AKKAEEDEKKAAEALKKE 1697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 744 lyTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSReeqerrhqmelKALKDQLEAERQAWVASCAK 823
Cdd:PTZ00121 1698 --AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK-----------KAEEAKKDEEEKKKIAHLKK 1764
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 824 KEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENRVKR---VRDKYETELSELEQ 890
Cdd:PTZ00121 1765 EEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGnlvINDSKEMEDSAIKE 1834
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
620-1024 |
1.90e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 58.24 E-value: 1.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 620 QHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEpEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQ 699
Cdd:COG4717 65 KPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELE-ELEAELEELREELEKLEKLLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 700 AEELREHLEREREALgqQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAA 779
Cdd:COG4717 144 LPERLEELEERLEEL--RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 780 LTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCA-------------------------------KKEEAW 828
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLggsllsliltiagvlflvlgllallflllarEKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 829 LLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAEN--RVKRVRDKYETELSELEQSERKlQERCTELKGRL 906
Cdd:COG4717 302 KEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRieELQELLREAEELEEELQLEELE-QEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 907 GEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVR-----------QEFAEQLAASQEETQRVKAELAELRA 975
Cdd:COG4717 381 VEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEaldeeeleeelEELEEELEELEEELEELREELAELEA 460
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 1958659903 976 R-QQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQHK 1024
Cdd:COG4717 461 ElEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYR 510
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
519-1022 |
4.39e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 4.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 519 TSVMRLKLELEEKKQAMVLLQRAL----AQQRDLaTRRVKETEKELsRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSE 594
Cdd:TIGR02168 267 EKLEELRLEVSELEEEIEELQKELyalaNEISRL-EQQKQILRERL-ANLERQLEELEAQLEELESKLDELAEELAELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 595 K----------CEAVVAELKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQ 664
Cdd:TIGR02168 345 KleelkeelesLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 665 KLIAK-HKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRR 743
Cdd:TIGR02168 425 ELLKKlEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 744 LYTEVAEEKERLGQQAARQRV-ELEELRQQLEES-SAAL------------TRALRAEFERSREEQERRHQMELKALKDQ 809
Cdd:TIGR02168 505 SEGVKALLKNQSGLSGILGVLsELISVDEGYEAAiEAALggrlqavvvenlNAAKKAIAFLKQNELGRVTFLPLDSIKGT 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 810 LEAERQAWVASCAKKEEAWLLTRErELKEEIRKG-------------RDQEIELvIHRLEADMTLAKEESERA------- 869
Cdd:TIGR02168 585 EIQGNDREILKNIEGFLGVAKDLV-KFDPKLRKAlsyllggvlvvddLDNALEL-AKKLRPGYRIVTLDGDLVrpggvit 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 870 -AENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLR--VVNTQMCSERASL-- 944
Cdd:TIGR02168 663 gGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSrqISALRKDLARLEAev 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 945 ----------------AQVVRQEFAEQLAASQEETQRVKAELAELRA-------------RQQMELDEVHRRVKTALARK 995
Cdd:TIGR02168 743 eqleeriaqlskelteLEAEIEELEERLEEAEEELAEAEAEIEELEAqieqlkeelkalrEALDELRAELTLLNEEAANL 822
|
570 580
....*....|....*....|....*..
gi 1958659903 996 EAAVNSLRKQHEAAEKRADHLEELLEQ 1022
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEE 849
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
714-1018 |
5.01e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 5.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 714 LGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAE-EKERLGQQAARQRVELEELRQQLEESSAALTrALRAEFERSR 792
Cdd:TIGR02169 200 LERLRREREKAERYQALLKEKREYEGYELLKEKEALErQKEAIERQLASLEEELEKLTEEISELEKRLE-EIEQLLEELN 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 793 EEQERRHQMELKALKDQLEaERQAWVASCAKKEEAwlltRERELKEEirKGRDQEIELVIHRLEADMTLAKEESER---- 868
Cdd:TIGR02169 279 KKIKDLGEEEQLRVKEKIG-ELEAEIASLERSIAE----KERELEDA--EERLAKLEAEIDKLLAEIEELEREIEEerkr 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 869 --AAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQ 946
Cdd:TIGR02169 352 rdKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958659903 947 VVRQ--EFAEQLAASQEETQRVKAELAELRArQQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEE 1018
Cdd:TIGR02169 432 IEAKinELEEEKEDKALEIKKQEWKLEQLAA-DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
671-975 |
1.21e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 671 KQEVRRLRG-LHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERER--AQQRLEQHLEQEQRALEQQRRRLYTE 747
Cdd:TIGR02168 676 RREIEELEEkIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQisALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 748 VAEEKERLGQQAAR------QRVELEELRQQLEESSAALTRALRAEFERSREEqerrhQMELKALKDqlEAERQAWVASC 821
Cdd:TIGR02168 756 LTELEAEIEELEERleeaeeELAEAEAEIEELEAQIEQLKEELKALREALDEL-----RAELTLLNE--EAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 822 AKKEEAWLLTRERELKEEIRKGRDQeIELVIHRLEaDMTLAKEESERAAEnRVKRVRDKYETELSELEQSERKLQERCTE 901
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSED-IESLAAEIE-ELEELIEELESELE-ALLNERASLEEALALLRSELEELSEELRE 905
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958659903 902 LKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKAELAELRA 975
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
552-850 |
1.31e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 1.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 552 RVKETEKELSRQLRQQKEQYEATIQ--------RHLSfIDQLIEDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQHEl 623
Cdd:TIGR02168 190 RLEDILNELERQLKSLERQAEKAERykelkaelRELE-LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEE- 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 624 eikKLKELMSatEKIRREKWINEKTKKIKEIT--VRGLEPEIQKLIAKHKQEVR---RLRGLHEAELQQREEQAAQRHLR 698
Cdd:TIGR02168 268 ---KLEELRL--EVSELEEEIEELQKELYALAneISRLEQQKQILRERLANLERqleELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 699 QAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRrlytEVAEEKERLGQQAARQRvELEELRQQLEESSA 778
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS----KVAQLELQIASLNNEIE-RLEARLERLEDRRE 417
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958659903 779 ALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEawLLTRERELKEEIRKGRDQEIEL 850
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE--LREELEEAEQALDAAERELAQL 487
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
582-1021 |
1.33e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.84 E-value: 1.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 582 IDQLIEDKkvlsEKCEAVVAELKQGD--QRCRERVAQVQEQHELEIKKLKELMSATEKIRR-----EKWINEKTKKIKEI 654
Cdd:PRK03918 137 IDAILESD----ESREKVVRQILGLDdyENAYKNLGEVIKEIKRRIERLEKFIKRTENIEElikekEKELEEVLREINEI 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 655 tvRGLEPEIQKLIAKHKQEVRRLRGLHE--AELQQREEQAAQR------HLRQAEELREHLEREREALGQQERERAQQRL 726
Cdd:PRK03918 213 --SSELPELREELEKLEKEVKELEELKEeiEELEKELESLEGSkrkleeKIRELEERIEELKKEIEELEEKVKELKELKE 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 727 EQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAA---RQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMEL 803
Cdd:PRK03918 291 KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINgieERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAK 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 804 KALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELviHRLEADMTLAKEESERA-----------AEN 872
Cdd:PRK03918 371 KEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGEL--KKEIKELKKAIEELKKAkgkcpvcgrelTEE 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 873 RVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKeLDDLRvvntqmcseraSLAQVVRQEF 952
Cdd:PRK03918 449 HRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKEL-AEQLK-----------ELEEKLKKYN 516
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958659903 953 AEQLAASQEETQRVKAELAELRARQQMELDEVHRrvKTALARKEAAVNslRKQHEAAEKRADHLEELLE 1021
Cdd:PRK03918 517 LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK--LEELKKKLAELE--KKLDELEEELAELLKELEE 581
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
598-931 |
1.34e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 598 AVVAELKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEItvrgLEPEIQKLIAKHKQEVRRL 677
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKE----KREYEGYELLKEKEALERQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 678 RGLHEAELQQREEQAAQRhlrqaeelrehlEREREALGQ------QERERAQQRLEQHLEQEQRALEQQRRRLYTEVA-- 749
Cdd:TIGR02169 239 KEAIERQLASLEEELEKL------------TEEISELEKrleeieQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIAsl 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 750 ----EEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSRE-----EQERRHQMELKALKDQLEAERQAWVAS 820
Cdd:TIGR02169 307 ersiAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKlteeyAELKEELEDLRAELEEVDKEFAETRDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 821 CAK-KEEAWLLTRER-ELKEEIRKGRDQEIELVIHRLEADMTLAkeeserAAENRVKRVRDKYETELSELEQSERKLQer 898
Cdd:TIGR02169 387 LKDyREKLEKLKREInELKRELDRLQEELQRLSEELADLNAAIA------GIEAKINELEEEKEDKALEIKKQEWKLE-- 458
|
330 340 350
....*....|....*....|....*....|...
gi 1958659903 899 ctELKGRLGEAEGEKERLQSLLRQKEKELDDLR 931
Cdd:TIGR02169 459 --QLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
558-924 |
2.00e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 2.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 558 KELSRQLRQQKEQYE------ATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQHELEIKKLKEL 631
Cdd:TIGR02168 680 EELEEKIEELEEKIAelekalAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 632 MSATEKIRREkwINEKTKKIKEitvrgLEPEIQKLiakhkqevrrlrglhEAELQQREEQAAQrhlrqaeeLREHLERER 711
Cdd:TIGR02168 760 EAEIEELEER--LEEAEEELAE-----AEAEIEEL---------------EAQIEQLKEELKA--------LREALDELR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 712 EALGQQERERAQQRLEqhLEQEQRALEQQRRRLyTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTralraefers 791
Cdd:TIGR02168 810 AELTLLNEEAANLRER--LESLERRIAATERRL-EDLEEQIEELSEDIESLAAEIEELEELIEELESELE---------- 876
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 792 reeqerrhqmELKALKDQLEAERQAwvascAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAae 871
Cdd:TIGR02168 877 ----------ALLNERASLEEALAL-----LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID-- 939
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958659903 872 NRVKRVRDKYETELSELEQ-------SERKLQERCTELKG---RLG--------EAEGEKERLQSLLRQKE 924
Cdd:TIGR02168 940 NLQERLSEEYSLTLEEAEAlenkiedDEEEARRRLKRLENkikELGpvnlaaieEYEELKERYDFLTAQKE 1010
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
662-1022 |
2.25e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 2.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 662 EIQKLIAKHKQEVRRLRGLHEAELQQREEqaAQRHLRQAEELREHLererealgQQERERAQQRLEQhLEQEQRALEQQR 741
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELSQELSD--ASRKIGEIEKEIEQL--------EQEEEKLKERLEE-LEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 742 rrlyTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRalraefersreeqerRHQMELKALKDQLEAERQAWVASC 821
Cdd:TIGR02169 754 ----ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH---------------SRIPEIQAELSKLEEEVSRIEARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 822 AKKEEAwllTRERELKEEIRKGRDQEIElvihRLEADMTLAKEESERAAENRVKRVRDKyETELSELEQSERKLQERCTE 901
Cdd:TIGR02169 815 REIEQK---LNRLTLEKEYLEKEIQELQ----EQRIDLKEQIKSIEKEIENLNGKKEEL-EEELEELEAALRDLESRLGD 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 902 LKGRLGEAEGEKERLQSLLRQKEKELDDLRvvntQMCSERASLAQVVRQEFAEQLAASQEETQRVKAEL------AELRA 975
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEAQIEKKR----KRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELsledvqAELQR 962
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1958659903 976 RQQ--MELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQ 1022
Cdd:TIGR02169 963 VEEeiRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEE 1011
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
716-1024 |
4.71e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.89 E-value: 4.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 716 QQERERAQQRLEQHLE--QEQRALEQQRRRLYTEVAE---EKERLGQQAARQRVELEELRQQLEESSAaltralRAEFER 790
Cdd:PRK02224 233 RETRDEADEVLEEHEErrEELETLEAEIEDLRETIAEterEREELAEEVRDLRERLEELEEERDDLLA------EAGLDD 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 791 SREEQERRHQMELKALKDQLEAE-RQAWVASCAKKEEAWLLTRERELKEEirkgRDQEIELVIHRLEADMTLAKEEsera 869
Cdd:PRK02224 307 ADAEAVEARREELEDRDEELRDRlEECRVAAQAHNEEAESLREDADDLEE----RAEELREEAAELESELEEAREA---- 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 870 aenrvkrvRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSL---LRQKEKELD-DLRVVNTQMCSERASLA 945
Cdd:PRK02224 379 --------VEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREErdeLREREAELEaTLRTARERVEEAEALLE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 946 Q---------VVRQEFAEQLAASQEETQRVKAELAELRARQqmelDEVHRRVKTALARKEAAvnslrKQHEAAEKRADHL 1016
Cdd:PRK02224 451 AgkcpecgqpVEGSPHVETIEEDRERVEELEAELEDLEEEV----EEVEERLERAEDLVEAE-----DRIERLEERREDL 521
|
....*...
gi 1958659903 1017 EELLEQHK 1024
Cdd:PRK02224 522 EELIAERR 529
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
516-814 |
5.78e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 5.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 516 EGTTSVMRLKlELEEKKQAMVLLQRALAQQRDLATRRVKETEKELS------RQLRQQKEQYEATIQRHLSFIDQLIEDK 589
Cdd:TIGR02168 226 ELALLVLRLE-ELREELEELQEELKEAEEELEELTAELQELEEKLEelrlevSELEEEIEELQKELYALANEISRLEQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 590 KVLSEKCEAVVAELKQgdqrcrervaqVQEQHELEIKKLKELmsATEKIRREKWINEKTKKIKEitvrgLEPEIQKLIAK 669
Cdd:TIGR02168 305 QILRERLANLERQLEE-----------LEAQLEELESKLDEL--AEELAELEEKLEELKEELES-----LEAELEELEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 670 HKQEVRRLRGLHEAELQQREEQAAqrhLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVA 749
Cdd:TIGR02168 367 LEELESRLEELEEQLETLRSKVAQ---LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE 443
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958659903 750 EEKERLGQQAARqrveLEELRQQLEESSAALTRALRAefERSREEQERRHQMELKALKDQLEAER 814
Cdd:TIGR02168 444 ELEEELEELQEE----LERLEEALEELREELEEAEQA--LDAAERELAQLQARLDSLERLQENLE 502
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
523-931 |
1.32e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 523 RLKLELEEKKQAMVLLQRALAQQRDLATRrvKETEKELsRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAE 602
Cdd:COG4717 106 ELEAELEELREELEKLEKLLQLLPLYQEL--EALEAEL-AELPERLEELEERLEELRELEEELEELEAELAELQEELEEL 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 603 LKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREkwINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHE 682
Cdd:COG4717 183 LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE--LEELEEELEQLENELEAAALEERLKEARLLLLIAAALLA 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 683 AELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRrrlytEVAEEKERLGQQAARQ 762
Cdd:COG4717 261 LLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEE-----ELEELLAALGLPPDLS 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 763 RVELEELRQQLEESSAALTRAlraefersreeqerrHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRK 842
Cdd:COG4717 336 PEELLELLDRIEELQELLREA---------------EELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQEL 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 843 grDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEgEKERLQSLLRQ 922
Cdd:COG4717 401 --KEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLE-EDGELAELLQE 477
|
....*....
gi 1958659903 923 KEKELDDLR 931
Cdd:COG4717 478 LEELKAELR 486
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
540-1024 |
2.52e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 2.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 540 RALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVaelkqgdQRCRERVAQVQE 619
Cdd:pfam15921 202 KKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLL-------QQHQDRIEQLIS 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 620 QHELEIKKLKELMS-----ATEKIRREKWINEKTKKIKEITVRGLEpEIQKLIAKHKQEVRRLRGLHEAELQQREEQ--A 692
Cdd:pfam15921 275 EHEVEITGLTEKASsarsqANSIQSQLEIIQEQARNQNSMYMRQLS-DLESTVSQLRSELREAKRMYEDKIEELEKQlvL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 693 AQRHLRQAEELREHLEREREALGQQereraQQRLEQHLEQEQRALEQQRrrlytevaEEKERLGQQAARQRVELEELRQQ 772
Cdd:pfam15921 354 ANSELTEARTERDQFSQESGNLDDQ-----LQKLLADLHKREKELSLEK--------EQNKRLWDRDTGNSITIDHLRRE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 773 LEESSAALTRAlraefersreeqerrhQMELKALKDQLEAERQAWVASCAKKEEAW----LLTRERELKEEIRKGRDQEI 848
Cdd:pfam15921 421 LDDRNMEVQRL----------------EALLKAMKSECQGQMERQMAAIQGKNESLekvsSLTAQLESTKEMLRKVVEEL 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 849 ELVIHRLE------ADMTLAKEESERAAE---NRVKRVRDKYETELSELEQSE------RKLQERCTELKGRLgeaeGEK 913
Cdd:pfam15921 485 TAKKMTLEssertvSDLTASLQEKERAIEatnAEITKLRSRVDLKLQELQHLKnegdhlRNVQTECEALKLQM----AEK 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 914 ERLQSLLRQKEKELddlrvvnTQMCSERASLAQVVRQEFAeQLAASQEETQRVKAELAELRARQQMELDEVHRRVKTALA 993
Cdd:pfam15921 561 DKVIEILRQQIENM-------TQLVGQHGRTAGAMQVEKA-QLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLEL 632
|
490 500 510
....*....|....*....|....*....|.
gi 1958659903 994 RKEAAVNSLRKQHEAAEKRADHLEELLEQHK 1024
Cdd:pfam15921 633 EKVKLVNAGSERLRAVKDIKQERDQLLNEVK 663
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
524-979 |
3.54e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 3.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 524 LKLELEEKKQAmvlLQRALAQQRDLATRRVKETEKELsRQLRQQKEQYEatiqrhlsfidQLIEDKKVLSEKCEAVVAEL 603
Cdd:COG4717 47 LLERLEKEADE---LFKPQGRKPELNLKELKELEEEL-KEAEEKEEEYA-----------ELQEELEELEEELEELEAEL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 604 KQGDQRcRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRglEPEIQKLIAKHKQEVRRLRGLHEA 683
Cdd:COG4717 112 EELREE-LEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEE--LEELEAELAELQEELEELLEQLSL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 684 ELQQREEQAAQRHLRQAEELREHlererealgQQERERAQQRLEQhLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQR 763
Cdd:COG4717 189 ATEEELQDLAEELEELQQRLAEL---------EEELEEAQEELEE-LEEELEQLENELEAAALEERLKEARLLLLIAAAL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 764 VELEELRQQLEESSAA------------------LTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKE 825
Cdd:COG4717 259 LALLGLGGSLLSLILTiagvlflvlgllallfllLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEE 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 826 EAWLLTRERELKEEIRKGRDQEIELVIHRLE----ADMTLAKEESERAAENRVKRVRdKYETELSELEQSERKLQERCTE 901
Cdd:COG4717 339 LLELLDRIEELQELLREAEELEEELQLEELEqeiaALLAEAGVEDEEELRAALEQAE-EYQELKEELEELEEQLEELLGE 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 902 LKGRLGEAEGE--KERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKAELAELRARQQM 979
Cdd:COG4717 418 LEELLEALDEEelEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKL 497
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
551-1024 |
4.23e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 4.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 551 RRVKETEKELsRQLRQQKEQYEATIQRhLSFIDQLIEDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQ-HELE--IKK 627
Cdd:PRK03918 207 REINEISSEL-PELREELEKLEKEVKE-LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEiEELEekVKE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 628 LKELM-SATEKIRREKWINEKTKKIKEI-----TVRGLEPEIQKLIAKHKQEVRRLRGLHE--AELQQREEQAAQRH--L 697
Cdd:PRK03918 285 LKELKeKAEEYIKLSEFYEEYLDELREIekrlsRLEEEINGIEERIKELEEKEERLEELKKklKELEKRLEELEERHelY 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 698 RQAEELREHLEREREALGQQERERAQQRLE------QHLEQEQRALEQQRRRLYTEVAEEKERL---------------- 755
Cdd:PRK03918 365 EEAKAKKEELERLKKRLTGLTPEKLEKELEelekakEEIEEEISKITARIGELKKEIKELKKAIeelkkakgkcpvcgre 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 756 ------GQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQL-EAERQAWVASCAKKEEAW 828
Cdd:PRK03918 445 lteehrKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLkELEEKLKKYNLEELEKKA 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 829 -----LLTRERELKEEIR--KGRDQEIELVIHRLEADMTLAKEESERAAE--NRVKRVRDKYETELSELEQSERKLQERC 899
Cdd:PRK03918 525 eeyekLKEKLIKLKGEIKslKKELEKLEELKKKLAELEKKLDELEEELAEllKELEELGFESVEELEERLKELEPFYNEY 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 900 TELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQvVRQEFaeqlaaSQEETQRVKAELAELRARqqm 979
Cdd:PRK03918 605 LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE-LEKKY------SEEEYEELREEYLELSRE--- 674
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 1958659903 980 eldevhrrvktaLARKEAAVNSLRKQHEAAEKRADHLEELLEQHK 1024
Cdd:PRK03918 675 ------------LAGLRAELEELEKRREEIKKTLEKLKEELEERE 707
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
725-1031 |
7.57e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.22 E-value: 7.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 725 RLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMElk 804
Cdd:pfam12128 586 DLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQ-- 663
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 805 ALKDQLE---AERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEA---------------DMTLAKEES 866
Cdd:pfam12128 664 SEKDKKNkalAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYwqvvegaldaqlallKAAIAARRS 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 867 ERAAEnrVKRVRDKYETELSELEQSERKLQERCTELKGRlgeaegeKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQ 946
Cdd:pfam12128 744 GAKAE--LKALETWYKRDLASLGVDPDVIAKLKREIRTL-------ERKIERIAVRRQEVLRYFDWYQETWLQRRPRLAT 814
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 947 VVRQ------EFAEQLAASQEETQRVKAELAELRA---RQQMELDEVHRRVK---TALARKEAAVNSLRKQHEAAEkRAD 1014
Cdd:pfam12128 815 QLSNieraisELQQQLARLIADTKLRRAKLEMERKaseKQQVRLSENLRGLRcemSKLATLKEDANSEQAQGSIGE-RLA 893
|
330
....*....|....*..
gi 1958659903 1015 HLEELLEQHKGPSLSSK 1031
Cdd:pfam12128 894 QLEDLKLKRDYLSESVK 910
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
629-816 |
8.10e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 8.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 629 KELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQA-AQRHLRQAEELREHL 707
Cdd:COG4913 242 EALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELArLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 708 EREREALGQQERERAQQRLEQhLEQEQRALEQ---QRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRAL 784
Cdd:COG4913 322 REELDELEAQIRGNGGDRLEQ-LEREIERLEReleERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEEL 400
|
170 180 190
....*....|....*....|....*....|..
gi 1958659903 785 RAEFERSREEQERRHQmeLKALKDQLEAERQA 816
Cdd:COG4913 401 EALEEALAEAEAALRD--LRRELRELEAEIAS 430
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
732-978 |
9.20e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 9.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 732 QEQRALEQQRRRLYTEVAEEKERLgQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEqerrhQMELKALKDQLE 811
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKEL-AALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-----EAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 812 AERQAwvascakkeeawLLTRERELKEEIRK----GRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSE 887
Cdd:COG4942 94 ELRAE------------LEAQKEELAELLRAlyrlGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 888 LEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLrvvntqmcseraslaQVVRQEFAEQLAASQEETQRVK 967
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARL---------------EKELAELAAELAELQQEAEELE 226
|
250
....*....|.
gi 1958659903 968 AELAELRARQQ 978
Cdd:COG4942 227 ALIARLEAEAA 237
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
511-1025 |
9.76e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 9.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 511 LELGSEGTTSVMRLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRqqkeqyEATIQRHLSFIDQLIEDKK 590
Cdd:TIGR00606 431 IRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAER------ELSKAEKNSLTETLKKEVK 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 591 VLSEKCEAVVAELKQGDQRCRERVAQVQEQHELEIKKlKELMSATEKIRREKW--INEKTKKIKEI-TVRGLEPEIQKLI 667
Cdd:TIGR00606 505 SLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLT-KDKMDKDEQIRKIKSrhSDELTSLLGYFpNKKQLEDWLHSKS 583
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 668 AKHKQEVRRLRGLHE--AELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQ--EQRALEQQRRR 743
Cdd:TIGR00606 584 KEINQTRDRLAKLNKelASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKssKQRAMLAGATA 663
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 744 LYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAK 823
Cdd:TIGR00606 664 VYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKE 743
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 824 KEEAWLLTRERELKEEIRKGR------DQEIELVIHRLEA------DMTLAKEESERAAENRVKRVRDKYETELSELEQS 891
Cdd:TIGR00606 744 KEIPELRNKLQKVNRDIQRLKndieeqETLLGTIMPEEESakvcltDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRT 823
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 892 ERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVV--RQEFAEQLAASQEETQRVKAE 969
Cdd:TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLqrRQQFEEQLVELSTEVQSLIRE 903
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958659903 970 LAElrARQQMELDEVHRrvKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQHKG 1025
Cdd:TIGR00606 904 IKD--AKEQDSPLETFL--EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHG 955
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
499-898 |
1.16e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 499 RESLVLEAGPRSLELGSEGTTSVMRLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRH 578
Cdd:pfam02463 630 KDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREK 709
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 579 LSFIDQLIEDKKVLsekceavvaelkqgDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRG 658
Cdd:pfam02463 710 EELKKLKLEAEELL--------------ADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKE 775
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 659 LEPEIQKLIAKHKQEVRRLRglhEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALE 738
Cdd:pfam02463 776 LAEEREKTEKLKVEEEKEEK---LKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLA 852
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 739 QQRRRLYTEVAEEKERLgQQAARQRVELEELRQQLEESSAALTralraefersreEQERRHQMELKALKDQLEAERQAWV 818
Cdd:pfam02463 853 EEELERLEEEITKEELL-QELLLKEEELEEQKLKDELESKEEK------------EKEEKKELEEESQKLNLLEEKENEI 919
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 819 ASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEAD-----MTLAKEESERAAENRVKRVRDKYETELSELEQSER 893
Cdd:pfam02463 920 EERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEernkrLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKER 999
|
....*
gi 1958659903 894 KLQER 898
Cdd:pfam02463 1000 LEEEK 1004
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
523-850 |
1.72e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 1.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 523 RLKLELEEKKQAMVLLQRALAQQ---RDLATRRVKETEKELSRQ---LRQQKEQYE---ATIQRHLSFIDQLIEDkkvLS 593
Cdd:TIGR02169 188 RLDLIIDEKRQQLERLRREREKAeryQALLKEKREYEGYELLKEkeaLERQKEAIErqlASLEEELEKLTEEISE---LE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 594 EKCEAVVAELKQgdqrCRERVAQVQEQHELEIK-KLKELMSATEKIRRekwinekTKKIKEITVRGLEPEIQKLIAkhkq 672
Cdd:TIGR02169 265 KRLEEIEQLLEE----LNKKIKDLGEEEQLRVKeKIGELEAEIASLER-------SIAEKERELEDAEERLAKLEA---- 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 673 EVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYtEVAEEK 752
Cdd:TIGR02169 330 EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN-ELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 753 ERLGQQAARQRVELEELRQQLEESSAALTrALRAEFERSREEQERRHQmELKALKDQLEAERQAWVA------------S 820
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKIN-ELEEEKEDKALEIKKQEW-KLEQLAADLSKYEQELYDlkeeydrvekelS 486
|
330 340 350
....*....|....*....|....*....|
gi 1958659903 821 CAKKEEAWLLTRERELKEEIRKGRDQEIEL 850
Cdd:TIGR02169 487 KLQRELAEAEAQARASEERVRGGRAVEEVL 516
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
525-1024 |
1.92e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 1.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 525 KLELEEKKQAMVLLQRALAQQRDlatrrvKETEKELSRQLRQQKEQYEATIQRhlsfidQLIEDKKVLSEKCEAVVAELK 604
Cdd:TIGR00618 365 TSIREISCQQHTLTQHIHTLQQQ------KTTLTQKLQSLCKELDILQREQAT------IDTRTSAFRDLQGQLAHAKKQ 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 605 QGDQRCRERVAQVQEQHELEIKKLKELMsATEKIRREKWINEKTKKIKEITVRglEPEIQKLIAKHKQEVRRLRGLHEAE 684
Cdd:TIGR00618 433 QELQQRYAELCAAAITCTAQCEKLEKIH-LQESAQSLKEREQQLQTKEQIHLQ--ETRKKAVVLARLLELQEEPCPLCGS 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 685 LQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQrrrlyTEVAEEKERLGQQAARQRV 764
Cdd:TIGR00618 510 CIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQM-----QEIQQSFSILTQCDNRSKE 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 765 ELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAwvascAKKEEAWLLTRERELKEEIRKGR 844
Cdd:TIGR00618 585 DIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQ-----CSQELALKLTALHALQLTLTQER 659
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 845 DQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYET----------ELSELEQSERKLQERCTELKGRLGEAEGEKE 914
Cdd:TIGR00618 660 VREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMlaqcqtllreLETHIEEYDREFNEIENASSSLGSDLAARED 739
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 915 RLQSLLRQ---------KEKELDDLR-----VVNTQMCSERASLAQVV------RQEFAEQLAASQEETQRVKAELAELR 974
Cdd:TIGR00618 740 ALNQSLKElmhqartvlKARTEAHFNnneevTAALQTGAELSHLAAEIqffnrlREEDTHLLKTLEAEIGQEIPSDEDIL 819
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1958659903 975 ARQQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQHK 1024
Cdd:TIGR00618 820 NLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
729-1019 |
2.33e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 729 HLEQEQRALEQQRRRLYTEVAEEkERLGQQAARQRVELEElRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKD 808
Cdd:pfam17380 276 HIVQHQKAVSERQQQEKFEKMEQ-ERLRQEKEEKAREVER-RRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERI 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 809 QLEaERQAWVASCAKKEEAWLLTRERELkEEIRKGRDQEIELVIHRLEADMTLAKEESER---AAENRVKRVRDKYETEL 885
Cdd:pfam17380 354 RQE-ERKRELERIRQEEIAMEISRMREL-ERLQMERQQKNERVRQELEAARKVKILEEERqrkIQQQKVEMEQIRAEQEE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 886 SELEQSERKLQERCTELKgRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQ----VVRQEFAEQLAASQE 961
Cdd:pfam17380 432 ARQREVRRLEEERAREME-RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEqrrkILEKELEERKQAMIE 510
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958659903 962 ETQRVKAELAELRARQQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEEL 1019
Cdd:pfam17380 511 EERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL 568
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
718-1024 |
3.00e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 3.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 718 ERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQER 797
Cdd:pfam02463 191 DLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQV 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 798 RHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKgrDQEIELVIHRLEADMTLAKEESERAaenrvkrv 877
Cdd:pfam02463 271 LKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEK--LKESEKEKKKAEKELKKEKEEIEEL-------- 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 878 rdkyETELSELEqserklqerctELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEFAEQLA 957
Cdd:pfam02463 341 ----EKELKELE-----------IKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEK 405
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958659903 958 ASQEETQRVKAELAELRARQQMELDEvhrrVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQHK 1024
Cdd:pfam02463 406 EAQLLLELARQLEDLLKEEKKEELEI----LEEEEESIELKQGKLTEEKEELEKQELKLLKDELELK 468
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
862-1018 |
3.17e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 862 AKEESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDlRVVNTQMCSER 941
Cdd:COG4942 41 KELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE-LLRALYRLGRQ 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 942 ASLAQVV---------------------RQEFAEQLAASQEETQRVKAELAELRARQQ---MELDEVHRRVKTALARKEA 997
Cdd:COG4942 120 PPLALLLspedfldavrrlqylkylapaRREQAEELRADLAELAALRAELEAERAELEallAELEEERAALEALKAERQK 199
|
170 180
....*....|....*....|.
gi 1958659903 998 AVNSLRKQHEAAEKRADHLEE 1018
Cdd:COG4942 200 LLARLEKELAELAAELAELQQ 220
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
662-857 |
4.23e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 4.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 662 EIQKLIAKHKQEVRRL---RGLHEAELQQREEQAAQRHLRQAEELREHLEREreALGQQERERAQQRLEQhLEQEQRALE 738
Cdd:COG4913 239 RAHEALEDAREQIELLepiRELAERYAAARERLAELEYLRAALRLWFAQRRL--ELLEAELEELRAELAR-LEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 739 QQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALR--AEFERSREEQERRHQMELKALKDQLEAERQA 816
Cdd:COG4913 316 ARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRArlEALLAALGLPLPASAEEFAALRAEAAALLEA 395
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958659903 817 WVAscakkEEAWLLTRERELKEEIRKGRDQ--EIELVIHRLEA 857
Cdd:COG4913 396 LEE-----ELEALEEALAEAEAALRDLRRElrELEAEIASLER 433
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
659-978 |
4.47e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 4.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 659 LEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALE 738
Cdd:pfam02463 175 LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 739 QQRRRLYTEVAEEKERLGQQ----AARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAER 814
Cdd:pfam02463 255 SSKQEIEKEEEKLAQVLKENkeeeKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEK 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 815 QAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETE---LSELEQS 891
Cdd:pfam02463 335 EEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEkeaQLLLELA 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 892 ERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKAELA 971
Cdd:pfam02463 415 RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQK 494
|
....*..
gi 1958659903 972 ELRARQQ 978
Cdd:pfam02463 495 LEERSQK 501
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
868-1022 |
5.53e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 5.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 868 RAAENRVKRVRDKY-----ETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLrVVNTQMCSERA 942
Cdd:COG3206 192 EEAEAALEEFRQKNglvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL-LQSPVIQQLRA 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 943 SLAQVVRQ--EFAEQLAASQEETQRVKAELAELRARQQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELL 1020
Cdd:COG3206 271 QLAELEAElaELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE 350
|
..
gi 1958659903 1021 EQ 1022
Cdd:COG3206 351 AE 352
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
523-884 |
6.14e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 6.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 523 RLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELsRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAE 602
Cdd:COG4717 118 LEKLEKLLQLLPLYQELEALEAELAELPERLEELEERL-EELRELEEELEELEAELAELQEELEELLEQLSLATEEELQD 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 603 LKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKE-----------ITVRGLEPEI-------- 663
Cdd:COG4717 197 LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEarlllliaaalLALLGLGGSLlsliltia 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 664 --------------------QKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQ 723
Cdd:COG4717 277 gvlflvlgllallflllareKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 724 QRLEQHLEQEQraLEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMEL 803
Cdd:COG4717 357 EELEEELQLEE--LEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEEL 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 804 KALKDQLEAerqawvascAKKEEAWLLTRERELKEEIRK----GRDQEIELVIHRLEADMTLAKEE--SERAAENRVKRV 877
Cdd:COG4717 435 EELEEELEE---------LEEELEELREELAELEAELEQleedGELAELLQELEELKAELRELAEEwaALKLALELLEEA 505
|
....*..
gi 1958659903 878 RDKYETE 884
Cdd:COG4717 506 REEYREE 512
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
523-812 |
8.32e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 8.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 523 RLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHL---------SFIDQLIEDKKVLS 593
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALllaglrglaGAVAVLIGVEAAYE 537
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 594 EKCEAVVAELKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEI------------------- 654
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGaavdlvasdlreadaryyv 617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 655 ---TVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLE 731
Cdd:COG1196 618 lgdTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 732 QEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLE 811
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
.
gi 1958659903 812 A 812
Cdd:COG1196 778 A 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
523-771 |
8.48e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 8.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 523 RLKLELEEKKQAMVLLQRALaqqrDLATRRVKETEKE---LSRQLRQQKEQYEAtIQRHLSFIDQLIEDKKVLSEKCEAV 599
Cdd:TIGR02169 692 SLQSELRRIENRLDELSQEL----SDASRKIGEIEKEieqLEQEEEKLKERLEE-LEEDLSSLEQEIENVKSELKELEAR 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 600 VAELKQGDQRCRERVAQVqEQHELE--IKKLKELMSATEKIRR--EKWINEKTKKIKEITVRG--LEPEIQkliakHKQE 673
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDL-EARLSHsrIPEIQAELSKLEEEVSriEARLREIEQKLNRLTLEKeyLEKEIQ-----ELQE 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 674 VRRLRGLHEAELQQREEqAAQRHLRQAEELREHLEREREALGQQERERAQQRLEqhLEQEQRALEQQRRRLYTEVAEEKE 753
Cdd:TIGR02169 841 QRIDLKEQIKSIEKEIE-NLNGKKEELEEELEELEAALRDLESRLGDLKKERDE--LEAQLRELERKIEELEAQIEKKRK 917
|
250
....*....|....*...
gi 1958659903 754 RLGQQAARQRVELEELRQ 771
Cdd:TIGR02169 918 RLSELKAKLEALEEELSE 935
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
680-1003 |
8.55e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 8.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 680 LHEAELQQREEQAAQRHLRQAEELREHLEREREALGQ--QERERAQQRLEQhLEQEQRALEQQRRRLyTEVAEEKERLGQ 757
Cdd:COG3096 895 LEELREELDAAQEAQAFIQQHGKALAQLEPLVAVLQSdpEQFEQLQADYLQ-AKEQQRRLKQQIFAL-SEVVQRRPHFSY 972
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 758 QAARQRVE-----LEELRQQLEESSAALTRALRAefersreeqerrhqmeLKALKDQLEAERQAWVAscakkeeawlLTR 832
Cdd:COG3096 973 EDAVGLLGensdlNEKLRARLEQAEEARREAREQ----------------LRQAQAQYSQYNQVLAS----------LKS 1026
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 833 ERELKEEIRKGRDQEIELVIHRLEADMtlakeeSERAAENRvkrvrdkyetelSELEQSERKLQERCTELKGRLGEAEGE 912
Cdd:COG3096 1027 SRDAKQQTLQELEQELEELGVQADAEA------EERARIRR------------DELHEELSQNRSRRSQLEKQLTRCEAE 1088
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 913 KERLQSLLRQKEKELDDLRvvnTQMCSERASLAQVVRqefaeqLAA-SQEETQRVKAELAELRARQQME-LDEVHRRVKT 990
Cdd:COG3096 1089 MDSLQKRLRKAERDYKQER---EQVVQAKAGWCAVLR------LARdNDVERRLHRRELAYLSADELRSmSDKALGALRL 1159
|
330
....*....|...
gi 1958659903 991 ALARKEAAVNSLR 1003
Cdd:COG3096 1160 AVADNEHLRDALR 1172
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
834-1017 |
8.92e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 8.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 834 RELKEEIRKGRDQeielvIHRLEAdmtlAKEESERAAENRVKRVRDKYETELSELEQSERK---LQERCTELKGRLGEAE 910
Cdd:COG4913 238 ERAHEALEDAREQ-----IELLEP----IRELAERYAAARERLAELEYLRAALRLWFAQRRlelLEAELEELRAELARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 911 GEKERLQSLLRQKEKELDDLRV------------VNTQMCSERASLAQV--VRQEFAEQLAASQEETQRVKAELAELRAR 976
Cdd:COG4913 309 AELERLEARLDALREELDELEAqirgnggdrleqLEREIERLERELEERerRRARLEALLAALGLPLPASAEEFAALRAE 388
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1958659903 977 ---QQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLE 1017
Cdd:COG4913 389 aaaLLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
524-967 |
9.16e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 9.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 524 LKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQK---EQYEATIQRHLSFIDQLIEDKKVLSEKC---- 596
Cdd:TIGR00618 435 LQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEqihLQETRKKAVVLARLLELQEEPCPLCGSCihpn 514
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 597 -EAVVAELKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVR 675
Cdd:TIGR00618 515 pARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITV 594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 676 RLRGLHEAELQQREEQAAQRHlrqaeelrEHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERL 755
Cdd:TIGR00618 595 RLQDLTEKLSEAEDMLACEQH--------ALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALS 666
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 756 GQQaarQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEeawLLTRERE 835
Cdd:TIGR00618 667 IRV---LPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSD---LAAREDA 740
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 836 LKEEIRKGRDQEIELVIHRLEADMTlaKEESERAAENRVkrvrDKYETELSELEQSERKLQERCTELKGRLGEAEGE-KE 914
Cdd:TIGR00618 741 LNQSLKELMHQARTVLKARTEAHFN--NNEEVTAALQTG----AELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEiPS 814
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1958659903 915 RLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQ--EFAEQLAASQEETQRVK 967
Cdd:TIGR00618 815 DEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQllKYEECSKQLAQLTQEQA 869
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
587-917 |
1.48e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 45.66 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 587 EDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKL 666
Cdd:pfam07888 62 ERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 667 IAK---HKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRR 743
Cdd:pfam07888 142 TQRvleRETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQK 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 744 LYTevAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKAlkdqLEAERQAWVASCAK 823
Cdd:pfam07888 222 LTT--AHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQA----AQLTLQLADASLAL 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 824 KEEAWLLTRERE-LKEEIRKGRDQEIELVIHRLEADMTLAKEESER-AAENRVKRVRDKYETELSEleqSERKLQerctE 901
Cdd:pfam07888 296 REGRARWAQEREtLQQSAEADKDRIEKLSAELQRLEERLQEERMEReKLEVELGREKDCNRVQLSE---SRRELQ----E 368
|
330
....*....|....*.
gi 1958659903 902 LKGRLGEAEGEKERLQ 917
Cdd:pfam07888 369 LKASLRVAQKEKEQLQ 384
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
522-1019 |
1.66e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 522 MRLKLEL-EEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYeATIQRHLSFIDQLIEDKKVLSEKCEAVV 600
Cdd:TIGR00618 245 LTQKREAqEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPL-AAHIKAVTQIEQQAQRIHTELQSKMRSR 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 601 AELKQGDQRCRERVAQVQEQHELeikkLKELMSATEKIRREkwiNEKTKKIKEITVRGLEPEiqkliakhkQEVRRLRGL 680
Cdd:TIGR00618 324 AKLLMKRAAHVKQQSSIEEQRRL----LQTLHSQEIHIRDA---HEVATSIREISCQQHTLT---------QHIHTLQQQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 681 HEAELQQreEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAA 760
Cdd:TIGR00618 388 KTTLTQK--LQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESA 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 761 RQRVELEELRQQLEESSAALTRalRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAW-LLTRERELKEE 839
Cdd:TIGR00618 466 QSLKEREQQLQTKEQIHLQETR--KKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQrGEQTYAQLETS 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 840 IRKGRDQEIELVIHRLEADmtlAKEESERAAENRVKRVRDKYETELSELEQSERKLQErctELKGRLGEAEGEKERLQSL 919
Cdd:TIGR00618 544 EEDVYHQLTSERKQRASLK---EQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQD---LTEKLSEAEDMLACEQHAL 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 920 LRQKEKELDDLRVVNT-QMCSERASLAQVVRQEFAEQLAASQEETQ--RVKAELAELRARQQMELDEVHRRVKTALARKE 996
Cdd:TIGR00618 618 LRKLQPEQDLQDVRLHlQQCSQELALKLTALHALQLTLTQERVREHalSIRVLPKELLASRQLALQKMQSEKEQLTYWKE 697
|
490 500
....*....|....*....|....*.
gi 1958659903 997 AAVNS---LRKQHEAAEKRADHLEEL 1019
Cdd:TIGR00618 698 MLAQCqtlLRELETHIEEYDREFNEI 723
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
565-926 |
2.19e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.11 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 565 RQQKEQYEATIQRHLSfidQLIEDKKVLSEKcEAVVAELKQGDQRCRERVAQVQEQHE-LEIKKLKELmsatEKIRREkw 643
Cdd:pfam17380 287 RQQQEKFEKMEQERLR---QEKEEKAREVER-RRKLEEAEKARQAEMDRQAAIYAEQErMAMEREREL----ERIRQE-- 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 644 inEKTKKIKEITVRGLEPEIQKLiakhkQEVRRLrglhEAELQQREEQAAQRhLRQAEELREHLEREREALGQQERERAQ 723
Cdd:pfam17380 357 --ERKRELERIRQEEIAMEISRM-----RELERL----QMERQQKNERVRQE-LEAARKVKILEEERQRKIQQQKVEMEQ 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 724 QRLEQhleqeQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESsaaltRALRAEFERSREEQERRHQMEL 803
Cdd:pfam17380 425 IRAEQ-----EEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEER-----KRKKLELEKEKRDRKRAEEQRR 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 804 KALKDQLEAERQAWVAscakkeeawlltrerelKEEIRKGRDQEIElvihrlEADMTLAKEESERAAENRVKRvrdkyET 883
Cdd:pfam17380 495 KILEKELEERKQAMIE-----------------EERKRKLLEKEME------ERQKAIYEEERRREAEEERRK-----QQ 546
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1958659903 884 ELSELEQSERKLQeRCTELKGRLGEAEGEKERLQSLLRQKEKE 926
Cdd:pfam17380 547 EMEERRRIQEQMR-KATEERSRLEAMEREREMMRQIVESEKAR 588
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
524-1018 |
2.33e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 2.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 524 LKLELEEKKQAMVLLQRaLAQQRDLATRrVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLsekcEAVVAEL 603
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFP-LDQYTQLALM-EFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVL----EKELKHL 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 604 KQGDQRCRERVAQVQEQHEleikklkelmSATEKIRREKWINEKTKKIKEItvRGLEPEIQKLIAKHKQEVRRLR-GLHE 682
Cdd:TIGR00618 232 REALQQTQQSHAYLTQKRE----------AQEEQLKKQQLLKQLRARIEEL--RAQEAVLEETQERINRARKAAPlAAHI 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 683 AELQQREEQAAQRHLRqaeelrehlerereaLGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQ 762
Cdd:TIGR00618 300 KAVTQIEQQAQRIHTE---------------LQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVA 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 763 RVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVA-----SCAKKEEAWLLTRERELK 837
Cdd:TIGR00618 365 TSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDlqgqlAHAKKQQELQQRYAELCA 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 838 EEIRKGRDQEIELVIHRLEADMTL-AKEESERAAEN---RVKRVRDKYETELSELEQSERKLQERCTELKGRL---GEAE 910
Cdd:TIGR00618 445 AAITCTAQCEKLEKIHLQESAQSLkEREQQLQTKEQihlQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARqdiDNPG 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 911 GEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEFAEQ--LAASQEETQRVKAELAELRARQQMELDEVHRRV 988
Cdd:TIGR00618 525 PLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQqsFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLS 604
|
490 500 510
....*....|....*....|....*....|
gi 1958659903 989 KTALARKEAAVNSLRKQHEAAEKRADHLEE 1018
Cdd:TIGR00618 605 EAEDMLACEQHALLRKLQPEQDLQDVRLHL 634
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
716-926 |
2.87e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 716 QQERERAQQRLEQhLEQEQRALEQQRRRLYTEVAEEKERLG---QQAARQRVELEELRQQLEESSAALTRALRAEFERSR 792
Cdd:COG4942 33 QQEIAELEKELAA-LKKEEKALLKQLAALERRIAALARRIRaleQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 793 EEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAaen 872
Cdd:COG4942 112 ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERA--- 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958659903 873 RVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKE 926
Cdd:COG4942 189 ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
765-1023 |
3.26e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 765 ELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRkgr 844
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELA--- 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 845 dqeielvihRLEADMTLAkeeseraaenrvkrvrdkyETELSELEQSERKLQERCTELKG-RLGEAEGEKERLQSLLRQK 923
Cdd:COG4913 306 ---------RLEAELERL-------------------EARLDALREELDELEAQIRGNGGdRLEQLEREIERLERELEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 924 EKELDDLRvvntQMCSERASLAQVVRQEFAEQLAASQEETQRVKAELAELRARQQmELDEVHRRVKTALARKEAAVNSLR 1003
Cdd:COG4913 358 ERRRARLE----ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALA-EAEAALRDLRRELRELEAEIASLE 432
|
250 260
....*....|....*....|
gi 1958659903 1004 KQHEAAEKRADHLEELLEQH 1023
Cdd:COG4913 433 RRKSNIPARLLALRDALAEA 452
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
471-775 |
3.52e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 3.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 471 LLSEAKLQSIMTFLDEMEKSGQERPAPWRESLVLEAGPRSLELGSEGTTSVMRLKLELEEKKQAmVLLQRALAQQRDLAT 550
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAA-ALQNIVVEDDEVAAA 561
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 551 RRVKETEKELSRQLRQQKEQYEAtiqrhlSFIDQLIEDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQHELEIKKLKE 630
Cdd:COG1196 562 AIEYLKAAKAGRATFLPLDKIRA------RAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAA 635
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 631 LMSATEKIRREKwinEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRH-LRQAEELREHLER 709
Cdd:COG1196 636 LRRAVTLAGRLR---EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAlLAEEEEERELAEA 712
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958659903 710 EREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEE 775
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
688-1023 |
4.55e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 4.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 688 REEQAAQRHLRQAEELREHLEREREAL-GQQERERAQQRLEQHLEQEQRALEQ--QRRRLYTEVAEEKERLGQQAARQRV 764
Cdd:PRK04863 276 RHANERRVHLEEALELRRELYTSRRQLaAEQYRLVEMARELAELNEAESDLEQdyQAASDHLNLVQTALRQQEKIERYQA 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 765 ELEELRQQLEESSAAltRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVA------------SCAKKEEAWL--- 829
Cdd:PRK04863 356 DLEELEERLEEQNEV--VEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVqqtraiqyqqavQALERAKQLCglp 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 830 -LTRErELKEEIRKGRDQEIELVIHRLEADMTL-----AKEESERAAEnRVKRVRDkyETELSELEQSERKLQERCTELK 903
Cdd:PRK04863 434 dLTAD-NAEDWLEEFQAKEQEATEELLSLEQKLsvaqaAHSQFEQAYQ-LVRKIAG--EVSRSEAWDVARELLRRLREQR 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 904 GRLGEAEGEKERLQSLLRQKEKELDDLRVVNT-QMCSERASLAQVVRQEFAEQLAASQEETQRVKAELAELRARQQMELD 982
Cdd:PRK04863 510 HLAEQLQQLRMRLSELEQRLRQQQRAERLLAEfCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLE 589
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1958659903 983 EVHRRVKTALARK------EAAVNSLRKQHEAAEKRADHLEELLEQH 1023
Cdd:PRK04863 590 QLQARIQRLAARApawlaaQDALARLREQSGEEFEDSQDVTEYMQQL 636
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
543-978 |
4.70e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 4.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 543 AQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCeavvAELKQGDQRCRERVAQVQEQHE 622
Cdd:TIGR00618 62 RSLNSLYAAPSEAAFAELEFSLGTKIYRVHRTLRCTRSHRKTEQPEQLYLEQKK----GRGRILAAKKSETEEVIHDLLK 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 623 LEIKKLKELMSATEKiRREKWINEKTKKIKEITVRGLEPEIQKLIA-KHKQEVRRLRGlhEAELQQREEQAAQRHLRQAE 701
Cdd:TIGR00618 138 LDYKTFTRVVLLPQG-EFAQFLKAKSKEKKELLMNLFPLDQYTQLAlMEFAKKKSLHG--KAELLTLRSQLLTLCTPCMP 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 702 ELREHLEREREALGQQERErAQQRLEQHLEQEQRALEQQrrrlytevaEEKERLGQQAARQRVELEELRQQLEESSAALT 781
Cdd:TIGR00618 215 DTYHERKQVLEKELKHLRE-ALQQTQQSHAYLTQKREAQ---------EEQLKKQQLLKQLRARIEELRAQEAVLEETQE 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 782 RALRAEfersreeqerrhqmelKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGRD---QEIELVIHRLEAD 858
Cdd:TIGR00618 285 RINRAR----------------KAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAhvkQQSSIEEQRRLLQ 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 859 MTLAKEESERAAENRVKRVRDKYETELsELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMC 938
Cdd:TIGR00618 349 TLHSQEIHIRDAHEVATSIREISCQQH-TLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLA 427
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1958659903 939 seRASLAQVVRQEFAEQL-AASQEETQRVKAELAELRARQQ 978
Cdd:TIGR00618 428 --HAKKQQELQQRYAELCaAAITCTAQCEKLEKIHLQESAQ 466
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
923-1020 |
7.70e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.53 E-value: 7.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 923 KEKELDDLRVVNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKAELAELRARQQMELDEVH--RRVKTALARKEAAVN 1000
Cdd:COG0542 409 KPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEeiQELKEELEQRYGKIP 488
|
90 100
....*....|....*....|
gi 1958659903 1001 SLRKQHEAAEKRADHLEELL 1020
Cdd:COG0542 489 ELEKELAELEEELAELAPLL 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
582-1024 |
8.22e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 8.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 582 IDQLIEDKKVLSEKCEAVVAELKQgdqrcRERVAQVQEQHElEIKKLKELMSATEKIRR--EKWINEKTKKIKEITVRGL 659
Cdd:COG4913 227 ADALVEHFDDLERAHEALEDAREQ-----IELLEPIRELAE-RYAAARERLAELEYLRAalRLWFAQRRLELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 660 EPEIQKLIAKhKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQ-----QRLEQHLEQEQ 734
Cdd:COG4913 301 RAELARLEAE-LERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARleallAALGLPLPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 735 RALEQQRRRLY---TEVAEEKERLGQQAARQRVELEELRQQLEEssaaLTRALRAEFERSREEQERRHQMeLKALKDQL- 810
Cdd:COG4913 380 EEFAALRAEAAallEALEEELEALEEALAEAEAALRDLRRELRE----LEAEIASLERRKSNIPARLLAL-RDALAEALg 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 811 EAERQAWVAsC-----AKKEEAW--------------LLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAE 871
Cdd:COG4913 455 LDEAELPFV-GelievRPEEERWrgaiervlggfaltLLVPPEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDP 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 872 NRVKRV--------RDKYETELS------------ELEQSERKL-------------------------------QERCT 900
Cdd:COG4913 534 DSLAGKldfkphpfRAWLEAELGrrfdyvcvdspeELRRHPRAItragqvkgngtrhekddrrrirsryvlgfdnRAKLA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 901 ELKGRLGEAEGEKERLQSLLRQKEKELDDLRvvntqmcSERASLAQVVRQEFAEQ-LAASQEETQRVKAELAELRARQQm 979
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQ-------ERREALQRLAEYSWDEIdVASAEREIAELEAELERLDASSD- 685
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1958659903 980 ELDEVHRRVKTALARKEAA---VNSLRKQHEAAEKRADHLEELLEQHK 1024
Cdd:COG4913 686 DLAALEEQLEELEAELEELeeeLDELKGEIGRLEKELEQAEEELDELQ 733
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
713-1024 |
8.60e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 8.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 713 ALGQQERERAQQRLEQ----HL--------EQEQRALEQQRRrlytEVAEEKERLGQQAARQRVELEELRQQLEessaal 780
Cdd:COG3096 805 SFDVQKLQRLHQAFSQfvggHLavafapdpEAELAALRQRRS----ELERELAQHRAQEQQLRQQLDQLKEQLQ------ 874
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 781 trALRAEFERSREEQERRHQMELKALKDQLEA--ERQAWVASCAKKeeawlLTRERELKEEIRKGRDQEIELVIHRLEAD 858
Cdd:COG3096 875 --LLNKLLPQANLLADETLADRLEELREELDAaqEAQAFIQQHGKA-----LAQLEPLVAVLQSDPEQFEQLQADYLQAK 947
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 859 MTL--AKEESERAAENRVKRVRDKYETELSELEQSeRKLQERcteLKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQ 936
Cdd:COG3096 948 EQQrrLKQQIFALSEVVQRRPHFSYEDAVGLLGEN-SDLNEK---LRARLEQAEEARREAREQLRQAQAQYSQYNQVLAS 1023
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 937 MCSERASLAQVVR---QEFAE---QLAASQEET-----QRVKAELAELRARQqmeldevhRRVKTALARKEAAVNSLRKQ 1005
Cdd:COG3096 1024 LKSSRDAKQQTLQeleQELEElgvQADAEAEERarirrDELHEELSQNRSRR--------SQLEKQLTRCEAEMDSLQKR 1095
|
330
....*....|....*....
gi 1958659903 1006 HEAAEKRADHLEELLEQHK 1024
Cdd:COG3096 1096 LRKAERDYKQEREQVVQAK 1114
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
541-976 |
9.39e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 9.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 541 ALAQQRDLATRRVKETEKELsRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQ 620
Cdd:PRK02224 311 AVEARREELEDRDEELRDRL-EECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEEL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 621 HElEIKKLKE-----------LMSATEKIRREKwiNEKTKKIKEI-----TVRGLEPEIQKLIAKHK-----QEVRRlrG 679
Cdd:PRK02224 390 EE-EIEELRErfgdapvdlgnAEDFLEELREER--DELREREAELeatlrTARERVEEAEALLEAGKcpecgQPVEG--S 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 680 LHEAELQQREEQAAQRHLRQAEELREhlererealgQQERERAQQRLEQHLEQEQRA--LEQQRRRLYTEVAEEKERLGQ 757
Cdd:PRK02224 465 PHVETIEEDRERVEELEAELEDLEEE----------VEEVEERLERAEDLVEAEDRIerLEERREDLEELIAERRETIEE 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 758 ---QAARQRVELEELRQQLEESSAALTRA-LRAEFERSREEQERRHQMELKALKDQLE--AERQAWVASCAKKEEawllt 831
Cdd:PRK02224 535 kreRAEELRERAAELEAEAEEKREAAAEAeEEAEEAREEVAELNSKLAELKERIESLEriRTLLAAIADAEDEIE----- 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 832 RERELKEEIRKGRDQEIELVIHRLEADMTLAKE-ESERAAENRVKRVRdkYETELSELEQSERKLQERCTELKGRLGEAE 910
Cdd:PRK02224 610 RLREKREALAELNDERRERLAEKRERKRELEAEfDEARIEEAREDKER--AEEYLEQVEEKLDELREERDDLQAEIGAVE 687
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958659903 911 GEKERLQSlLRQKEKELDDlrvvntqmcseraslaqvvRQEFAEQLAASQEETQRVKAEL-AELRAR 976
Cdd:PRK02224 688 NELEELEE-LRERREALEN-------------------RVEALEALYDEAEELESMYGDLrAELRQR 734
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
624-1024 |
1.12e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 624 EIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEpeiqkliakhkqEVRRLRGLHEAELQQREEQAAQRHLRQAEEL 703
Cdd:PTZ00121 1095 EAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAE------------EARKAEDARKAEEARKAEDAKRVEIARKAED 1162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 704 REHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRA 783
Cdd:PTZ00121 1163 ARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEA 1242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 784 LRAEFERSREEQERRHQMELKALKDQLEAERqawvASCAKKEEAWLLTRERELKEEIRKGRDQEielvihrlEADMTLAK 863
Cdd:PTZ00121 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIK----AEEARKADELKKAEEKKKADEAKKAEEKK--------KADEAKKK 1310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 864 EESERAAEnrvkRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSllRQKEKELDDLRVVNTQMCSERA- 942
Cdd:PTZ00121 1311 AEEAKKAD----EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA--AEEKAEAAEKKKEEAKKKADAAk 1384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 943 SLAQVVRQefAEQLAASQEETQRvKAELAELRARQQMELDEVHRRvktalARKEAAVNSLRKQHEAAeKRADHLEELLEQ 1022
Cdd:PTZ00121 1385 KKAEEKKK--ADEAKKKAEEDKK-KADELKKAAAAKKKADEAKKK-----AEEKKKADEAKKKAEEA-KKADEAKKKAEE 1455
|
..
gi 1958659903 1023 HK 1024
Cdd:PTZ00121 1456 AK 1457
|
|
| PHA03252 |
PHA03252 |
DNA packaging tegument protein UL25; Provisional |
849-910 |
1.12e-03 |
|
DNA packaging tegument protein UL25; Provisional
Pssm-ID: 223024 Cd Length: 589 Bit Score: 42.78 E-value: 1.12e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958659903 849 ELVIHRLEADMTLA-KEESERAAENRVKRVRDKyeTELSELEqseRKLQERCTELKGRLGEAE 910
Cdd:PHA03252 28 EEDLRRLRDDSALRlRRYREDLLRDRLLRRRLG--EELDDLQ---KRLQTECEDLRSRVSEAE 85
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
716-924 |
1.27e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 716 QQERERAQQRLEQHLEQEQRALEQQRRRL--------YTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAE 787
Cdd:COG3206 170 REEARKALEFLEEQLPELRKELEEAEAALeefrqkngLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 788 FERSREEQERRHQMELKALKDQLeaerqawvascakkeeawlLTRERELKEEIRKGRDQEIELVihRLEADMtlakEESE 867
Cdd:COG3206 250 GSGPDALPELLQSPVIQQLRAQL-------------------AELEAELAELSARYTPNHPDVI--ALRAQI----AALR 304
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958659903 868 RAAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKE 924
Cdd:COG3206 305 AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVE 361
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
539-898 |
1.38e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 539 QRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQ------RHLSFIDQLIEDKKVLSEKCEA---VVAELKQGDQR 609
Cdd:PRK04863 301 QLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNlvqtalRQQEKIERYQADLEELEERLEEqneVVEEADEQQEE 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 610 CRERVaqvqEQHELEIKKLKELMS------------------ATEKIRREKWINEktkkIKEITVRGLEPEIQKLIAKHK 671
Cdd:PRK04863 381 NEARA----EAAEEEVDELKSQLAdyqqaldvqqtraiqyqqAVQALERAKQLCG----LPDLTADNAEDWLEEFQAKEQ 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 672 QEVRRLRglhEAELQQREEQAAQRHLRQAEELREHlerereALGQQERERAQQRLEQHLEQ--EQRALEQQRRRLYTEVA 749
Cdd:PRK04863 453 EATEELL---SLEQKLSVAQAAHSQFEQAYQLVRK------IAGEVSRSEAWDVARELLRRlrEQRHLAEQLQQLRMRLS 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 750 EEKERLGQQAARQRV----------------ELEELRQQLEESSAALTRALRaeFERSREEQERRHQMELKALKDQLEAE 813
Cdd:PRK04863 524 ELEQRLRQQQRAERLlaefckrlgknlddedELEQLQEELEARLESLSESVS--EARERRMALRQQLEQLQARIQRLAAR 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 814 RQAWVASCAKkeeawlLTRERELKEEIRKGRDQEIELVIHRLEadmtlakeeSERAAEnrvkRVRDKYETELSELEQSER 893
Cdd:PRK04863 602 APAWLAAQDA------LARLREQSGEEFEDSQDVTEYMQQLLE---------RERELT----VERDELAARKQALDEEIE 662
|
....*
gi 1958659903 894 KLQER 898
Cdd:PRK04863 663 RLSQP 667
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
883-995 |
1.44e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.88 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 883 TELSELEQSERK-LQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEFA------EQ 955
Cdd:PRK09039 66 ADLLSLERQGNQdLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAqvellnQQ 145
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1958659903 956 LAASQEETQRVKAELAELRAR---QQMELDEVHRRVKTALARK 995
Cdd:PRK09039 146 IAALRRQLAALEAALDASEKRdreSQAKIADLGRRLNVALAQR 188
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
644-782 |
1.68e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 644 INEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREE--QAAQRHLRQAEELREHLERERealgqQERER 721
Cdd:PRK12704 36 AEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNelQKLEKRLLQKEENLDRKLELL-----EKREE 110
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958659903 722 AQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQA------ARQRVeLEELRQQLEESSAALTR 782
Cdd:PRK12704 111 ELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISgltaeeAKEIL-LEKVEEEARHEAAVLIK 176
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
671-784 |
1.93e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 42.25 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 671 KQEVRRLRglHEAELQQREEQAAQRHLRQAEELREHLERErealgQQERERAQQRLEQHLEQEQRALEQQRRrlytEVAE 750
Cdd:PRK11448 148 QQEVLTLK--QQLELQAREKAQSQALAEAQQQELVALEGL-----AAELEEKQQELEAQLEQLQEKAAETSQ----ERKQ 216
|
90 100 110
....*....|....*....|....*....|....
gi 1958659903 751 EKERLGQQAArQRVELEElrqqleessaALTRAL 784
Cdd:PRK11448 217 KRKEITDQAA-KRLELSE----------EETRIL 239
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
718-979 |
2.53e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 718 ERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAefersREEQER 797
Cdd:pfam12128 269 SDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDA-----DIETAA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 798 RHQMELKALKDQLEAErqawvascaKKEEAWLLTRERELKEE---IRKGRDQEIELVIHRLEADMTLAKEESER---AAE 871
Cdd:pfam12128 344 ADQEQLPSWQSELENL---------EERLKALTGKHQDVTAKynrRRSKIKEQNNRDIAGIKDKLAKIREARDRqlaVAE 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 872 NRVKRV----RDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSlLRQKEKELDDLRVVNTQMCSERASLAQ- 946
Cdd:pfam12128 415 DDLQALeselREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQ-LENFDERIERAREEQEAANAEVERLQSe 493
|
250 260 270
....*....|....*....|....*....|....*
gi 1958659903 947 --VVRQEFAEQLAASQEETQRVKAELAELRARQQM 979
Cdd:pfam12128 494 lrQARKRRDQASEALRQASRRLEERQSALDELELQ 528
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
716-1025 |
2.71e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 716 QQERERAQQRLEQ----HL--------EQEQRALEQQRRRLYTEVAeekeRLGQQAARQRVELEELRQQLEessaaltrA 783
Cdd:PRK04863 809 VQKLQRLHQAFSRfigsHLavafeadpEAELRQLNRRRVELERALA----DHESQEQQQRSQLEQAKEGLS--------A 876
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 784 LRAEFERSREEQERRHQMELKALKDQLEAERQAwvASCAKKEEAWLltreRELKEEIRKGRDQEIElvIHRLEADMTLAK 863
Cdd:PRK04863 877 LNRLLPRLNLLADETLADRVEEIREQLDEAEEA--KRFVQQHGNAL----AQLEPIVSVLQSDPEQ--FEQLKQDYQQAQ 948
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 864 EESERA-------AENRVKRVRDKYETELSELEQsERKLQERcteLKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQ 936
Cdd:PRK04863 949 QTQRDAkqqafalTEVVQRRAHFSYEDAAEMLAK-NSDLNEK---LRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLAS 1024
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 937 MCSERASLAQVVrQEFAEQLaasQEETQRVKAELAELRARQQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHL 1016
Cdd:PRK04863 1025 LKSSYDAKRQML-QELKQEL---QDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKL 1100
|
330
....*....|....*.
gi 1958659903 1017 E-------ELLEQHKG 1025
Cdd:PRK04863 1101 ErdyhemrEQVVNAKA 1116
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
865-1022 |
2.76e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 865 ESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKErLQSLlrqkEKELDDLRvvntqmcsERASL 944
Cdd:COG1579 41 AALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKE-YEAL----QKEIESLK--------RRISD 107
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958659903 945 AQVVRQEFAEQLAASQEETQRVKAELAELRArqqmELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADhlEELLEQ 1022
Cdd:COG1579 108 LEDEILELMERIEELEEELAELEAELAELEA----ELEEKKAELDEELAELEAELEELEAEREELAAKIP--PELLAL 179
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
697-1021 |
2.91e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 697 LRQAEELREHLEREREALGQQERERAQQRLEQH----LEQEQRALEQQRRRLYTEV--AEEKERLGQQAARQ-------R 763
Cdd:COG3096 274 MRHANERRELSERALELRRELFGARRQLAEEQYrlveMARELEELSARESDLEQDYqaASDHLNLVQTALRQqekieryQ 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 764 VELEELRQQLEESSAAltRALRAEFERSREEQERRHQMELKALKDQLE--------------AERQAWVAscakKEEAWL 829
Cdd:COG3096 354 EDLEELTERLEEQEEV--VEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyqqaldvqqtraiQYQQAVQA----LEKARA 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 830 LTREREL-----KEEIRKGRDQEIELVIHRLEADMTL-----AKEESERAAEnRVKRVRDkyETELSELEQSERKLQERC 899
Cdd:COG3096 428 LCGLPDLtpenaEDYLAAFRAKEQQATEEVLELEQKLsvadaARRQFEKAYE-LVCKIAG--EVERSQAWQTARELLRRY 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 900 TELKGRLGEAEGEKERLQSlLRQKEKELDDLRVVNTQMC----SERASLAQVvrQEFAEQLAASQEETQRVKAELAELRA 975
Cdd:COG3096 505 RSQQALAQRLQQLRAQLAE-LEQRLRQQQNAERLLEEFCqrigQQLDAAEEL--EELLAELEAQLEELEEQAAEAVEQRS 581
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1958659903 976 RQQMELDEVHRRVKtALARKEAAvnsLRKQHEAAEKRADHLEELLE 1021
Cdd:COG3096 582 ELRQQLEQLRARIK-ELAARAPA---WLAAQDALERLREQSGEALA 623
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
534-786 |
3.09e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 534 AMVLLQRALAQQRDLAtrrvkETEKELSrQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKQGDQRcrer 613
Cdd:COG4942 8 ALLLALAAAAQADAAA-----EAEAELE-QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 614 vaqvQEQHELEIKKLKELMSATEKiRREKWINEKTKKIKEITVRGLEPEIQKLI-AKHKQEVRRLRGLHEAELQQREEQA 692
Cdd:COG4942 78 ----LAALEAELAELEKEIAELRA-ELEAQKEELAELLRALYRLGRQPPLALLLsPEDFLDAVRRLQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 693 AQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLgQQAARQRVELEELRQQ 772
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL-AELQQEAEELEALIAR 231
|
250
....*....|....
gi 1958659903 773 LEESSAALTRALRA 786
Cdd:COG4942 232 LEAEAAAAAERTPA 245
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
871-1008 |
3.42e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.35 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 871 ENRVKRVRDKYETELSE-------LEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRvvntqmcsERAs 943
Cdd:PRK00409 501 ENIIEEAKKLIGEDKEKlneliasLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL--------EEA- 571
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 944 laqvvRQEFAEQLAASQEETQRVKAELAELRARQQM-----ELDEVHRRVKTALARKEAAVNSLRKQHEA 1008
Cdd:PRK00409 572 -----EKEAQQAIKEAKKEADEIIKELRQLQKGGYAsvkahELIEARKRLNKANEKKEKKKKKQKEKQEE 636
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
564-779 |
3.57e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 3.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 564 LRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKQgdqrcRERVAQVQEQHELEIKKLKELMSATEKIRREkw 643
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQ-----KNGLVDLSEEAKLLLQQLSELESQLAEARAE-- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 644 INEKTKKIKEI------------------TVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELRE 705
Cdd:COG3206 235 LAEAEARLAALraqlgsgpdalpellqspVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRI 314
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958659903 706 HLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLytevaeekERLGQQAARQRVELEELRQQLEESSAA 779
Cdd:COG3206 315 LASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL--------RRLEREVEVARELYESLLQRLEEARLA 380
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
538-935 |
5.18e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.87 E-value: 5.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 538 LQRALaQQRDLATRRVKETEKELSRQLRQQKEQYEATIQ-------RHLSFIDQLIEDKKVLSEKCEAVVAE---LKQGD 607
Cdd:pfam15921 417 LRREL-DDRNMEVQRLEALLKAMKSECQGQMERQMAAIQgknesleKVSSLTAQLESTKEMLRKVVEELTAKkmtLESSE 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 608 QRCRERVAQVQEQH-----------------ELEIKKLKELMSATEKIRREKWINEKTK-------KIKEITVRGLEPEI 663
Cdd:pfam15921 496 RTVSDLTASLQEKEraieatnaeitklrsrvDLKLQELQHLKNEGDHLRNVQTECEALKlqmaekdKVIEILRQQIENMT 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 664 QkLIAKHKqevrRLRGLHEAELQQREEQAAQRHLRQAEELREHLErerealgQQERERAQQRLEQHLEQEQRAL---EQQ 740
Cdd:pfam15921 576 Q-LVGQHG----RTAGAMQVEKAQLEKEINDRRLELQEFKILKDK-------KDAKIRELEARVSDLELEKVKLvnaGSE 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 741 RRRLYTEVAEEKERLGQQAARQRVELEELRQQLEessaALTRALRAEFERSREEQERRhQMELKALKDQLEAERQAWVAS 820
Cdd:pfam15921 644 RLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYE----VLKRNFRNKSEEMETTTNKL-KMQLKSAQSELEQTRNTLKSM 718
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 821 CAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENR---------VKRVRDKYETELSELEQS 891
Cdd:pfam15921 719 EGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKnklsqelstVATEKNKMAGELEVLRSQ 798
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1958659903 892 ERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNT 935
Cdd:pfam15921 799 ERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHT 842
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
832-1026 |
5.31e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 5.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 832 RERE-LKEEIRKGRDQEIELvihRLEADMTLAKEESERAAENRVkrvrdkyETELSELEQSERKLQERCTELKGRLGEAE 910
Cdd:PRK02224 272 REREeLAEEVRDLRERLEEL---EEERDDLLAEAGLDDADAEAV-------EARREELEDRDEELRDRLEECRVAAQAHN 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 911 GEKERLQSLLRQKEKELDDLRvvntqmcsERASLAQVVRQEFAEQLAASQEETQRVKAELAELRAR------QQMELDEV 984
Cdd:PRK02224 342 EEAESLREDADDLEERAEELR--------EEAAELESELEEAREAVEDRREEIEELEEEIEELRERfgdapvDLGNAEDF 413
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1958659903 985 HRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQHKGP 1026
Cdd:PRK02224 414 LEELREERDELREREAELEATLRTARERVEEAEALLEAGKCP 455
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
530-744 |
6.15e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.59 E-value: 6.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 530 EKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEAtiqrhlsFIDQLIEDKKVLSEKCEAVVAELKQGDQR 609
Cdd:pfam12128 661 EKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEE-------QKEQKREARTEKQAYWQVVEGALDAQLAL 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 610 CRERVAQVQEQHELEIKKLKELMSAtekirrekwiNEKTKKIKEITVRGLEPEIQKL------IAKHKQEVRRLRGLhea 683
Cdd:pfam12128 734 LKAAIAARRSGAKAELKALETWYKR----------DLASLGVDPDVIAKLKREIRTLerkierIAVRRQEVLRYFDW--- 800
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958659903 684 eLQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRleQHLEQEQRALEQQRRRL 744
Cdd:pfam12128 801 -YQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRR--AKLEMERKASEKQQVRL 858
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
614-870 |
7.16e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 7.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 614 VAQVQEQHELEikklKELMSATEKIRREKWINEKTKKIKEITVRGLEpEIQKLIAKHKQEVRRLRGlHEAELQQREEQAA 693
Cdd:COG4942 16 AAQADAAAEAE----AELEQLQQEIAELEKELAALKKEEKALLKQLA-ALERRIAALARRIRALEQ-ELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 694 QRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQL 773
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 774 EESSAALTRALRaefersreeqerrhqmELKALKDQLEAERQAwvascAKKEEAWLLTRERELKEEIRKGRDQEIEL--V 851
Cdd:COG4942 170 EAERAELEALLA----------------ELEEERAALEALKAE-----RQKLLARLEKELAELAAELAELQQEAEELeaL 228
|
250
....*....|....*....
gi 1958659903 852 IHRLEADMTLAKEESERAA 870
Cdd:COG4942 229 IARLEAEAAAAAERTPAAG 247
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
527-931 |
8.05e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 8.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 527 ELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEaTIQRHLSFIDQLIEDKKVLSEKCEAVVAELKQG 606
Cdd:PRK03918 356 ELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKE-EIEEEISKITARIGELKKEIKELKKAIEELKKA 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 607 DQRCRERVAQVQEQHELEIkkLKELMSATEKIRRE-KWINEKTKKIKEITVrglepEIQKLIAKHKqEVRRLRGLHEaEL 685
Cdd:PRK03918 435 KGKCPVCGRELTEEHRKEL--LEEYTAELKRIEKElKEIEEKERKLRKELR-----ELEKVLKKES-ELIKLKELAE-QL 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 686 QQREEQAAQRHLRQAEELREHLEREREAL----GQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAAR 761
Cdd:PRK03918 506 KELEEKLKKYNLEELEKKAEEYEKLKEKLiklkGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFE 585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 762 QRVELEELRQQLEEssaaltralraefersreeqERRHQMELKALKDQLEAErqawvascakKEEAWLLTRERELKEEIR 841
Cdd:PRK03918 586 SVEELEERLKELEP--------------------FYNEYLELKDAEKELERE----------EKELKKLEEELDKAFEEL 635
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659903 842 KGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSELEQSERKLQE---RCTELKGRLGEAEGEKERLQS 918
Cdd:PRK03918 636 AETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEikkTLEKLKEELEEREKAKKELEK 715
|
410
....*....|...
gi 1958659903 919 LLRQKEKeLDDLR 931
Cdd:PRK03918 716 LEKALER-VEELR 727
|
|
| |
