|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
462-961 |
8.15e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 95.39 E-value: 8.15e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 462 RLKLELEEKKQAMVLLQRALAQQRdlATRRVKETEKELSRQ----LRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEA 537
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELE--AELAELEAELEELRLeleeLELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 538 VVAELKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLR 617
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 618 GLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLytEVAEEKERLGQQ 697
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE--ALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 698 AARQRVELEELRQQLEE--SSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTREREL 775
Cdd:COG1196 472 AALLEAALAELLEELAEaaARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 776 KEEIRKGRDQEIE-LVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKER 854
Cdd:COG1196 552 VVEDDEVAAAAIEyLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 855 LQSLLRQKEKELDDLRVVNTQMcsERASLAQVVRQEFAEQLAASQEETQRVKAELAELRARQQMELDEVHRRVKTALARK 934
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEG--EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500
....*....|....*....|....*..
gi 1958659905 935 EAAVNSLRKQHEAAEKRADHLEELLEQ 961
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREE 736
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
463-961 |
3.17e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 93.46 E-value: 3.17e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 463 LKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAEL 542
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 543 KQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREkwinEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEA 622
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEEL----EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 623 ELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQhLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQR 702
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER-LEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 703 VELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKG 782
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 783 RDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSEL-------EQSERKLQERCTELKGRLGEAEGEKERL 855
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLpldkiraRAALAAALARGAIGAAVDLVASDLREAD 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 856 QSLLRQKEKELDDLRVVNTQMC-----SERASLAQVVRQEFAEQLAASQEETQRVKAELAELRARQQMELDEVHRRVKTA 930
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAARLEAalrraVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
490 500 510
....*....|....*....|....*....|.
gi 1958659905 931 LARKEAAVNSLRKQHEAAEKRADHLEELLEQ 961
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEE 723
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
610-962 |
6.11e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.51 E-value: 6.11e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 610 KQEVRRLRglHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYtEVAE 689
Cdd:COG1196 219 KEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY-ELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 690 EKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQerrhqmELKALKDQLEAERQAWVASCAKKEEAwLL 769
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE------ELEEELEEAEEELEEAEAELAEAEEA-LL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 770 TRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAE 849
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 850 GEKERLQSLLRQKEKELDDLRVVNTQmcseraslaqvVRQEFAEQLAASQEETQRVKAELAELRARQQMELDEVHRRVKT 929
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAAL-----------LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLA 517
|
330 340 350
....*....|....*....|....*....|...
gi 1958659905 930 ALARKEAAVNSLRKQHEAAEKRADHLEELLEQH 962
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAALEAALAAALQN 550
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
451-915 |
3.11e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 3.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 451 ELGSEGTTSVMRLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEK--ELSRQLRQQKEQYEATIQRHLSFIDQLIEDK 528
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEleELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 529 KVLSEKCEAVVAELKQGDQRCRERVAQVQEQHELEiKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAK 608
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELE-EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 609 HKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQR----------ALEQ 678
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLaglrglagavAVLI 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 679 QRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRA--LRAEFERSREEQERRHQMELKALKDQLEAERQAW 756
Cdd:COG1196 531 GVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAtfLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 757 VASCAKK----------EEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSE 826
Cdd:COG1196 611 ADARYYVlgdtllgrtlVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 827 LEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRvvntQMCSERASLAQVVRQEFAEQLAASQEETQRVK 906
Cdd:COG1196 691 EELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER----EELLEELLEEEELLEEEALEELPEPPDLEELE 766
|
....*....
gi 1958659905 907 AELAELRAR 915
Cdd:COG1196 767 RELERLERE 775
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
468-962 |
6.91e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.70 E-value: 6.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 468 EEKKQAMVLLQRALAQQRDLATRRVKETEK--ELSRQLRQQKEQYEATIQRhlsfidqlIEDKKVLSEKCEAVVAELKQG 545
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKadEAKKKAEEAKKKADAAKKK--------AEEAKKAAEAAKAEAEAAADE 1358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 546 DQRCRERVAQVQEQHELEIKKLKELMSATEKIRR----EKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRlrglhE 621
Cdd:PTZ00121 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKadeaKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK-----A 1433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 622 AELQQREEQAaqRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRrlyTEVAEEKERLGQQAARQ 701
Cdd:PTZ00121 1434 DEAKKKAEEA--KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK---AEEAKKKADEAKKAAEA 1508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 702 RVELEELRQQLEESSA-ALTRALRAEFERSREEQERRHQM-ELKALKDQLEAERQAWVASCAKKEEAWLLTRERelKEEI 779
Cdd:PTZ00121 1509 KKKADEAKKAEEAKKAdEAKKAEEAKKADEAKKAEEKKKAdELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK--AEEA 1586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 780 RKGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVR-DKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSL 858
Cdd:PTZ00121 1587 KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 859 LRQKEKElddlrvvntQMCSERASLAQVVRQEFAEQLAASQEETQRV----KAELAELRARQQMELDEVHRRVKTALARK 934
Cdd:PTZ00121 1667 AKKAEED---------KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAeelkKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
|
490 500
....*....|....*....|....*...
gi 1958659905 935 EAAvnslRKQHEAAEKRADHLEELLEQH 962
Cdd:PTZ00121 1738 EAE----EDKKKAEEAKKDEEEKKKIAH 1761
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
657-966 |
7.84e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 7.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 657 ERERAQQRLEQHLEQEQR--ALEQQRRRL--------YTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAE 726
Cdd:TIGR02168 197 ELERQLKSLERQAEKAERykELKAELRELelallvlrLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 727 FERSREEQERRH-QMELKALKDQLEAERQAwvascAKKEEAWLLTRERELKEEIRKGRDQEIEL--VIHRLEADMTLAKE 803
Cdd:TIGR02168 277 SELEEEIEELQKeLYALANEISRLEQQKQI-----LRERLANLERQLEELEAQLEELESKLDELaeELAELEEKLEELKE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 804 ESErAAENRVKRVRDKYEtelsELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRvvntqmcSERASL 883
Cdd:TIGR02168 352 ELE-SLEAELEELEAELE----ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE-------DRRERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 884 AQVVRQEFAEQLAASQEETQRVKAELAELRARQQMELDEVHRRVKTA---LARKEAAVNSLRKQHEAAEKRADHLEELLE 960
Cdd:TIGR02168 420 QQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELreeLEEAEQALDAAERELAQLQARLDSLERLQE 499
|
....*.
gi 1958659905 961 QHKGPS 966
Cdd:TIGR02168 500 NLEGFS 505
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
213-879 |
6.45e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 6.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 213 RQEEAARKKAREEKARQARQAAiqelQQKRAQKAREVEHRPPKERPETRALEQPRPTQEPPSMPSSVTHPKANNAGASLY 292
Cdd:PTZ00121 1200 RKAEAARKAEEERKAEEARKAE----DAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE 1275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 293 PTGPADPCPPASEsfpeRQPSLEDKPQDAHSQVEAREDLAALASTRSKTRARATLDDLLDTLKLLEEEPEPLLHPKAYRQ 372
Cdd:PTZ00121 1276 EARKADELKKAEE----KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 373 DRYAWMDEEEDTNPLTADNLEKfgklSAAPGPPDDGTLLSEAKLQSimtflDEMEKSGQERPAPWRESLVLEAGPRSLEl 452
Cdd:PTZ00121 1352 AEAAADEAEAAEEKAEAAEKKK----EEAKKKADAAKKKAEEKKKA-----DEAKKKAEEDKKKADELKKAAAAKKKAD- 1421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 453 gsegttsvmRLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATiqrhlsfidqliEDKKVLS 532
Cdd:PTZ00121 1422 ---------EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD------------EAKKKAE 1480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 533 EKCEAvvAELKQGDQRCRERVAQVQEQHElEIKKLKELMSATEKIRREKWINEKTKKiKEITVRGLEPEIQKLIAKHKQE 612
Cdd:PTZ00121 1481 EAKKA--DEAKKKAEEAKKKADEAKKAAE-AKKKADEAKKAEEAKKADEAKKAEEAK-KADEAKKAEEKKKADELKKAEE 1556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 613 VRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKE 692
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVE 1636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 693 RLGQQAARQRVELEELRQQLEESsaaltralraefersreeqerrhqmELKALKDQLEAERQAWVASCAKKEEawlltre 772
Cdd:PTZ00121 1637 QLKKKEAEEKKKAEELKKAEEEN-------------------------KIKAAEEAKKAEEDKKKAEEAKKAE------- 1684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 773 relkEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKgrlgEAEGEK 852
Cdd:PTZ00121 1685 ----EDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK----KDEEEK 1756
|
650 660
....*....|....*....|....*..
gi 1958659905 853 ERLQSLLRQKEKELDDLRVVNTQMCSE 879
Cdd:PTZ00121 1757 KKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
464-963 |
7.90e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.24 E-value: 7.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 464 KLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAvvAELK 543
Cdd:PTZ00121 1244 KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA--DEAK 1321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 544 QGDQRCRERVAQVQEQHElEIKKLKELMSATEKIRREKWinEKTKKIKEITVRGLEPEIQKLIAKhKQEVRRLRGLHEAE 623
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAE-EAKKAAEAAKAEAEAAADEA--EAAEEKAEAAEKKKEEAKKKADAA-KKKAEEKKKADEAK 1397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 624 LQQREEQAAQRHLRQAEELREHLEREREalgQQERERAQQRLEQHLEQEQRALEQQRRrlyTEVAEEKERLGQQAARQRv 703
Cdd:PTZ00121 1398 KKAEEDKKKADELKKAAAAKKKADEAKK---KAEEKKKADEAKKKAEEAKKADEAKKK---AEEAKKAEEAKKKAEEAK- 1470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 704 ELEELRQQLEESSAAlTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGR 783
Cdd:PTZ00121 1471 KADEAKKKAEEAKKA-DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 784 DQEIELVIHRLEAdmtLAKEESERAAENRVKRVRDKYEtelsELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKE 863
Cdd:PTZ00121 1550 ELKKAEELKKAEE---KKKAEEAKKAEEDKNMALRKAE----EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA 1622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 864 KELDDLRVVNTQMCSERASLAQVVRQefAEQLAASQEETQRVKAELA------ELRARQQMELDEVHRRVKTALARKEA- 936
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQLKKKEAEEKKK--AEELKKAEEENKIKAAEEAkkaeedKKKAEEAKKAEEDEKKAAEALKKEAEe 1700
|
490 500
....*....|....*....|....*....
gi 1958659905 937 --AVNSLRKQHEAAEKRADHLEELLEQHK 963
Cdd:PTZ00121 1701 akKAEELKKKEAEEKKKAEELKKAEEENK 1729
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
658-961 |
1.06e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 658 RERAQQRLE---QHLEQEQRALEQQRRRLytevaeekERLGQQA--ARQRVELEELRQQLEESSAALTRAlraefersre 732
Cdd:COG1196 174 KEEAERKLEateENLERLEDILGELERQL--------EPLERQAekAERYRELKEELKELEAELLLLKLR---------- 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 733 eqerrhqmELKALKDQLEAERQAwvascAKKEEAWLLTRERELKEEIRKGRDQEIELvihRLEADMTLAKEESERAAENR 812
Cdd:COG1196 236 --------ELEAELEELEAELEE-----LEAELEELEAELAELEAELEELRLELEEL---ELELEEAQAEEYELLAELAR 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 813 VKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQvVRQEFA 892
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA-ELAEAE 378
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958659905 893 EQLAASQEETQRVKAELAELRARQQmELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQ 961
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLE-ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
652-944 |
1.25e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 652 ALGQQERERAQQRLEQHLEQEQRALEQQRRRLyTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSR 731
Cdd:TIGR02168 669 NSSILERRREIEELEEKIEELEEKIAELEKAL-AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 732 EEQERRHQM-----ELKALKDQLEAERQAWVASCAKKE--EAWLLTRERELKEEIRKGRDQEIELVIHRLEA-------- 796
Cdd:TIGR02168 748 RIAQLSKELteleaEIEELEERLEEAEEELAEAEAEIEelEAQIEQLKEELKALREALDELRAELTLLNEEAanlrerle 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 797 DMTLAKEESERAAENRVKRVRDKYEtELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQM 876
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSE-DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958659905 877 cSERASLAQVVRQEFAEQLAASQEETQRVKAELAE----LRARQQMELDEV---HRRVKTALARKEAAVNSLRKQ 944
Cdd:TIGR02168 907 -ESKRSELRRELEELREKLAQLELRLEGLEVRIDNlqerLSEEYSLTLEEAealENKIEDDEEEARRRLKRLENK 980
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
213-829 |
3.46e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 3.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 213 RQEEAARKKAREEKARQARQAAIQELQQKRAQKAREVEHRPPKERPETRALEQPRPTQE---PPSMPSSVTHPKANNAGA 289
Cdd:PTZ00121 1230 KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEkkkADEAKKAEEKKKADEAKK 1309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 290 SLYPTGPADPCPPASESFPERQPSLEDKPQDAHSQVEAREDLAALASTRSKTRARATLDDLLDTLKLLEEEPEPLLHPKA 369
Cdd:PTZ00121 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 370 YRQDRYAWMDEEEDTNpltadNLEKFGKLSAAPGPPDDGTLLSEAKLQSimtflDEMEKSGQERPAPWRESLVLEAGPRS 449
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKK-----KADELKKAAAAKKKADEAKKKAEEKKKA-----DEAKKKAEEAKKADEAKKKAEEAKKA 1459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 450 LELG--SEGTTSVMRLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIED 527
Cdd:PTZ00121 1460 EEAKkkAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 528 KKVLS-EKCEAV--VAELKQGDQ-RCRERVAQVQEQHELEIKKLKELMSATEK-IRREKWINEKTKKIKEITVRGLEPEI 602
Cdd:PTZ00121 1540 KKAEEkKKADELkkAEELKKAEEkKKAEEAKKAEEDKNMALRKAEEAKKAEEArIEEVMKLYEEEKKMKAEEAKKAEEAK 1619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 603 QKLIAKHKQEVRRlRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQrLEQHLEQEQRALEQQRRR 682
Cdd:PTZ00121 1620 IKAEELKKAEEEK-KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE-AKKAEEDEKKAAEALKKE 1697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 683 lyTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSReeqerrhqmelKALKDQLEAERQAWVASCAK 762
Cdd:PTZ00121 1698 --AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK-----------KAEEAKKDEEEKKKIAHLKK 1764
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 763 KEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENRVKR---VRDKYETELSELEQ 829
Cdd:PTZ00121 1765 EEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGnlvINDSKEMEDSAIKE 1834
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
559-963 |
9.42e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.93 E-value: 9.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 559 QHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEpEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQ 638
Cdd:COG4717 65 KPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELE-ELEAELEELREELEKLEKLLQLLPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 639 AEELREHLEREREALgqQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAA 718
Cdd:COG4717 144 LPERLEELEERLEEL--RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 719 LTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCA-------------------------------KKEEAW 767
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLggsllsliltiagvlflvlgllallflllarEKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 768 LLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAEN--RVKRVRDKYETELSELEQSERKlQERCTELKGRL 845
Cdd:COG4717 302 KEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRieELQELLREAEELEEELQLEELE-QEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 846 GEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVR-----------QEFAEQLAASQEETQRVKAELAELRA 914
Cdd:COG4717 381 VEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEaldeeeleeelEELEEELEELEEELEELREELAELEA 460
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 1958659905 915 R-QQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQHK 963
Cdd:COG4717 461 ElEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYR 510
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
653-957 |
1.29e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 653 LGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAE-EKERLGQQAARQRVELEELRQQLEESSAALTrALRAEFERSR 731
Cdd:TIGR02169 200 LERLRREREKAERYQALLKEKREYEGYELLKEKEALErQKEAIERQLASLEEELEKLTEEISELEKRLE-EIEQLLEELN 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 732 EEQERRHQMELKALKDQLEaERQAWVASCAKKEEAwlltRERELKEEirKGRDQEIELVIHRLEADMTLAKEESER---- 807
Cdd:TIGR02169 279 KKIKDLGEEEQLRVKEKIG-ELEAEIASLERSIAE----KERELEDA--EERLAKLEAEIDKLLAEIEELEREIEEerkr 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 808 --AAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQ 885
Cdd:TIGR02169 352 rdKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958659905 886 VVRQ--EFAEQLAASQEETQRVKAELAELRArQQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEE 957
Cdd:TIGR02169 432 IEAKinELEEEKEDKALEIKKQEWKLEQLAA-DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
458-961 |
2.41e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 2.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 458 TSVMRLKLELEEKKQAMVLLQRAL----AQQRDLaTRRVKETEKELsRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSE 533
Cdd:TIGR02168 267 EKLEELRLEVSELEEEIEELQKELyalaNEISRL-EQQKQILRERL-ANLERQLEELEAQLEELESKLDELAEELAELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 534 K----------CEAVVAELKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQ 603
Cdd:TIGR02168 345 KleelkeelesLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 604 KLIAK-HKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRR 682
Cdd:TIGR02168 425 ELLKKlEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 683 LYTEVAEEKERLGQQAARQRV-ELEELRQQLEES-SAAL------------TRALRAEFERSREEQERRHQMELKALKDQ 748
Cdd:TIGR02168 505 SEGVKALLKNQSGLSGILGVLsELISVDEGYEAAiEAALggrlqavvvenlNAAKKAIAFLKQNELGRVTFLPLDSIKGT 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 749 LEAERQAWVASCAKKEEAWLLTRErELKEEIRKG-------------RDQEIELvIHRLEADMTLAKEESERA------- 808
Cdd:TIGR02168 585 EIQGNDREILKNIEGFLGVAKDLV-KFDPKLRKAlsyllggvlvvddLDNALEL-AKKLRPGYRIVTLDGDLVrpggvit 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 809 -AENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASL---- 883
Cdd:TIGR02168 663 gGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLeaev 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 884 ----------------AQVVRQEFAEQLAASQEETQRVKAELAELRA-------------RQQMELDEVHRRVKTALARK 934
Cdd:TIGR02168 743 eqleeriaqlskelteLEAEIEELEERLEEAEEELAEAEAEIEELEAqieqlkeelkalrEALDELRAELTLLNEEAANL 822
|
570 580
....*....|....*....|....*..
gi 1958659905 935 EAAVNSLRKQHEAAEKRADHLEELLEQ 961
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEE 849
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
491-810 |
3.11e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 3.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 491 RVKETEKELSRQLRQQKEQYEATIQ--------RHLSfIDQLIEDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQHEl 562
Cdd:TIGR02168 190 RLEDILNELERQLKSLERQAEKAERykelkaelRELE-LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEE- 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 563 eikKLKELMSatEKIRREKWINEKTKKIKEIT--VRGLEPEIQKLIAKHKQEVR---RLRGLHEAELQQREEQAAQRHLR 637
Cdd:TIGR02168 268 ---KLEELRL--EVSELEEEIEELQKELYALAneISRLEQQKQILRERLANLERqleELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 638 QAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRrlytEVAEEKERLGQQAARQRvELEELRQQLEESSA 717
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS----KVAQLELQIASLNNEIE-RLEARLERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 718 ALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEAD 797
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
330
....*....|...
gi 1958659905 798 MTLAKEESERAAE 810
Cdd:TIGR02168 498 QENLEGFSEGVKA 510
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
610-914 |
3.32e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 3.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 610 KQEVRRLRG-LHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERER--AQQRLEQHLEQEQRALEQQRRRLYTE 686
Cdd:TIGR02168 676 RREIEELEEkIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQisALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 687 VAEEKERLGQQAAR------QRVELEELRQQLEESSAALTRALRAEFERSREEqerrhQMELKALKDqlEAERQAWVASC 760
Cdd:TIGR02168 756 LTELEAEIEELEERleeaeeELAEAEAEIEELEAQIEQLKEELKALREALDEL-----RAELTLLNE--EAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 761 AKKEEAWLLTRERELKEEIRKGRDQeIELVIHRLEaDMTLAKEESERAAEnRVKRVRDKYETELSELEQSERKLQERCTE 840
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSED-IESLAAEIE-ELEELIEELESELE-ALLNERASLEEALALLRSELEELSEELRE 905
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958659905 841 LKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKAELAELRA 914
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
537-870 |
3.93e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 3.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 537 AVVAELKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEItvrgLEPEIQKLIAKHKQEVRRL 616
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKE----KREYEGYELLKEKEALERQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 617 RGLHEAELQQREEQAAQRhlrqaeelrehlEREREALGQ------QERERAQQRLEQHLEQEQRALEQQRRRLYTEVA-- 688
Cdd:TIGR02169 239 KEAIERQLASLEEELEKL------------TEEISELEKrleeieQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIAsl 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 689 ----EEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSRE-----EQERRHQMELKALKDQLEAERQAWVAS 759
Cdd:TIGR02169 307 ersiAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKlteeyAELKEELEDLRAELEEVDKEFAETRDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 760 CAK-KEEAWLLTRER-ELKEEIRKGRDQEIELVIHRLEADMTLAkeeserAAENRVKRVRDKYETELSELEQSERKLQer 837
Cdd:TIGR02169 387 LKDyREKLEKLKREInELKRELDRLQEELQRLSEELADLNAAIA------GIEAKINELEEEKEDKALEIKKQEWKLE-- 458
|
330 340 350
....*....|....*....|....*....|...
gi 1958659905 838 ctELKGRLGEAEGEKERLQSLLRQKEKELDDLR 870
Cdd:TIGR02169 459 --QLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
601-961 |
7.18e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 7.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 601 EIQKLIAKHKQEVRRLRGLHEAELQQREEqaAQRHLRQAEELREHLererealgQQERERAQQRLEQhLEQEQRALEQQR 680
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELSQELSD--ASRKIGEIEKEIEQL--------EQEEEKLKERLEE-LEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 681 rrlyTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRalraefersreeqerRHQMELKALKDQLEAERQAWVASC 760
Cdd:TIGR02169 754 ----ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH---------------SRIPEIQAELSKLEEEVSRIEARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 761 AKKEEAwllTRERELKEEIRKGRDQEIElvihRLEADMTLAKEESERAAENRVKRVRDKyETELSELEQSERKLQERCTE 840
Cdd:TIGR02169 815 REIEQK---LNRLTLEKEYLEKEIQELQ----EQRIDLKEQIKSIEKEIENLNGKKEEL-EEELEELEAALRDLESRLGD 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 841 LKGRLGEAEGEKERLQSLLRQKEKELDDLRvvntQMCSERASLAQVVRQEFAEQLAASQEETQRVKAEL------AELRA 914
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEAQIEKKR----KRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELsledvqAELQR 962
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1958659905 915 RQQ--MELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQ 961
Cdd:TIGR02169 963 VEEeiRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEE 1011
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
521-960 |
7.59e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 7.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 521 IDQLIEDKkvlsEKCEAVVAELKQGD--QRCRERVAQVQEQHELEIKKLKELMSATEKIRR-----EKWINEKTKKIKEI 593
Cdd:PRK03918 137 IDAILESD----ESREKVVRQILGLDdyENAYKNLGEVIKEIKRRIERLEKFIKRTENIEElikekEKELEEVLREINEI 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 594 tvRGLEPEIQKLIAKHKQEVRRLRGLHE--AELQQREEQAAQR------HLRQAEELREHLEREREALGQQERERAQQRL 665
Cdd:PRK03918 213 --SSELPELREELEKLEKEVKELEELKEeiEELEKELESLEGSkrkleeKIRELEERIEELKKEIEELEEKVKELKELKE 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 666 EQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAA---RQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMEL 742
Cdd:PRK03918 291 KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINgieERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAK 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 743 KALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELviHRLEADMTLAKEESERA-----------AEN 811
Cdd:PRK03918 371 KEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGEL--KKEIKELKKAIEELKKAkgkcpvcgrelTEE 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 812 RVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEkelddlrvvntqMCSERASLAQVVRQEF 891
Cdd:PRK03918 449 HRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE------------LAEQLKELEEKLKKYN 516
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958659905 892 AEQLAASQEETQRVKAELAELRARQQMELDEVHRrvKTALARKEAAVNslRKQHEAAEKRADHLEELLE 960
Cdd:PRK03918 517 LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK--LEELKKKLAELE--KKLDELEEELAELLKELEE 581
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
497-863 |
9.68e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 9.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 497 KELSRQLRQQKEQYE------ATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQHELEIKKLKEL 570
Cdd:TIGR02168 680 EELEEKIEELEEKIAelekalAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 571 MSATEKIRREkwINEKTKKIKEitvrgLEPEIQKLiakhkqevrrlrglhEAELQQREEQAAQrhlrqaeeLREHLERER 650
Cdd:TIGR02168 760 EAEIEELEER--LEEAEEELAE-----AEAEIEEL---------------EAQIEQLKEELKA--------LREALDELR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 651 EALGQQERERAQQRLEqhLEQEQRALEQQRRRLyTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTralraefers 730
Cdd:TIGR02168 810 AELTLLNEEAANLRER--LESLERRIAATERRL-EDLEEQIEELSEDIESLAAEIEELEELIEELESELE---------- 876
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 731 reeqerrhqmELKALKDQLEAERQAwvascAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAae 810
Cdd:TIGR02168 877 ----------ALLNERASLEEALAL-----LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID-- 939
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958659905 811 NRVKRVRDKYETELSELEQ-------SERKLQERCTELKG---RLG--------EAEGEKERLQSLLRQKE 863
Cdd:TIGR02168 940 NLQERLSEEYSLTLEEAEAlenkiedDEEEARRRLKRLENkikELGpvnlaaieEYEELKERYDFLTAQKE 1010
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
655-963 |
1.24e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.73 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 655 QQERERAQQRLEQHLE--QEQRALEQQRRRLYTEVAE---EKERLGQQAARQRVELEELRQQLEESSAaltralRAEFER 729
Cdd:PRK02224 233 RETRDEADEVLEEHEErrEELETLEAEIEDLRETIAEterEREELAEEVRDLRERLEELEEERDDLLA------EAGLDD 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 730 SREEQERRHQMELKALKDQLEAE-RQAWVASCAKKEEAWLLTRERELKEEirkgRDQEIELVIHRLEADMTLAKEEsera 808
Cdd:PRK02224 307 ADAEAVEARREELEDRDEELRDRlEECRVAAQAHNEEAESLREDADDLEE----RAEELREEAAELESELEEAREA---- 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 809 aenrvkrvRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSL---LRQKEKELD-DLRVVNTQMCSERASLA 884
Cdd:PRK02224 379 --------VEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREErdeLREREAELEaTLRTARERVEEAEALLE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 885 Q---------VVRQEFAEQLAASQEETQRVKAELAELRARQqmelDEVHRRVKTALARKEAAvnslrKQHEAAEKRADHL 955
Cdd:PRK02224 451 AgkcpecgqpVEGSPHVETIEEDRERVEELEAELEDLEEEV----EEVEERLERAEDLVEAE-----DRIERLEERREDL 521
|
....*...
gi 1958659905 956 EELLEQHK 963
Cdd:PRK02224 522 EELIAERR 529
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
455-753 |
1.39e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 455 EGTTSVMRLKlELEEKKQAMVLLQRALAQQRDLATRRVKETEKELS------RQLRQQKEQYEATIQRHLSFIDQLIEDK 528
Cdd:TIGR02168 226 ELALLVLRLE-ELREELEELQEELKEAEEELEELTAELQELEEKLEelrlevSELEEEIEELQKELYALANEISRLEQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 529 KVLSEKCEAVVAELKQgdqrcrervaqVQEQHELEIKKLKELmsATEKIRREKWINEKTKKIKEITvrglepeiQKLIAK 608
Cdd:TIGR02168 305 QILRERLANLERQLEE-----------LEAQLEELESKLDEL--AEELAELEEKLEELKEELESLE--------AELEEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 609 HKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVA 688
Cdd:TIGR02168 364 EAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE 443
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958659905 689 EEKERLGQQAARqrveLEELRQQLEESSAALTRALRAefERSREEQERRHQMELKALKDQLEAER 753
Cdd:TIGR02168 444 ELEEELEELQEE----LERLEEALEELREELEEAEQA--LDAAERELAQLQARLDSLERLQENLE 502
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
462-870 |
6.84e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 6.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 462 RLKLELEEKKQAMVLLQRALAQQRDLATRrvKETEKELsRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAE 541
Cdd:COG4717 106 ELEAELEELREELEKLEKLLQLLPLYQEL--EALEAEL-AELPERLEELEERLEELRELEEELEELEAELAELQEELEEL 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 542 LKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREkwINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHE 621
Cdd:COG4717 183 LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE--LEELEEELEQLENELEAAALEERLKEARLLLLIAAALLA 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 622 AELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRrrlytEVAEEKERLGQQAARQ 701
Cdd:COG4717 261 LLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEE-----ELEELLAALGLPPDLS 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 702 RVELEELRQQLEESSAALTRAlraefersreeqerrHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRK 781
Cdd:COG4717 336 PEELLELLDRIEELQELLREA---------------EELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQEL 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 782 grDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEgEKERLQSLLRQ 861
Cdd:COG4717 401 --KEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLE-EDGELAELLQE 477
|
....*....
gi 1958659905 862 KEKELDDLR 870
Cdd:COG4717 478 LEELKAELR 486
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
568-755 |
9.68e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 9.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 568 KELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQA-AQRHLRQAEELREHL 646
Cdd:COG4913 242 EALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELArLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 647 EREREALGQQERERAQQRLEQhLEQEQRALEQ---QRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRAL 723
Cdd:COG4913 322 REELDELEAQIRGNGGDRLEQ-LEREIERLEReleERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEEL 400
|
170 180 190
....*....|....*....|....*....|..
gi 1958659905 724 RAEFERSREEQERRHQmeLKALKDQLEAERQA 755
Cdd:COG4913 401 EALEEALAEAEAALRD--LRRELRELEAEIAS 430
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
479-963 |
1.21e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.35 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 479 RALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVaelkqgdQRCRERVAQVQE 558
Cdd:pfam15921 202 KKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLL-------QQHQDRIEQLIS 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 559 QHELEIKKLKELMS-----ATEKIRREKWINEKTKKIKEITVRGLEpEIQKLIAKHKQEVRRLRGLHEAELQQREEQ--A 631
Cdd:pfam15921 275 EHEVEITGLTEKASsarsqANSIQSQLEIIQEQARNQNSMYMRQLS-DLESTVSQLRSELREAKRMYEDKIEELEKQlvL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 632 AQRHLRQAEELREHLEREREALGQQereraQQRLEQHLEQEQRALEQQRrrlytevaEEKERLGQQAARQRVELEELRQQ 711
Cdd:pfam15921 354 ANSELTEARTERDQFSQESGNLDDQ-----LQKLLADLHKREKELSLEK--------EQNKRLWDRDTGNSITIDHLRRE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 712 LEESSAALTRAlraefersreeqerrhQMELKALKDQLEAERQAWVASCAKKEEAW----LLTRERELKEEIRKGRDQEI 787
Cdd:pfam15921 421 LDDRNMEVQRL----------------EALLKAMKSECQGQMERQMAAIQGKNESLekvsSLTAQLESTKEMLRKVVEEL 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 788 ELVIHRLE------ADMTLAKEESERAAE---NRVKRVRDKYETELSELEQSE------RKLQERCTELKGRLgeaeGEK 852
Cdd:pfam15921 485 TAKKMTLEssertvSDLTASLQEKERAIEatnAEITKLRSRVDLKLQELQHLKnegdhlRNVQTECEALKLQM----AEK 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 853 ERLQSLLRQKEKELddlrvvnTQMCSERASLAQVVRQEFAeQLAASQEETQRVKAELAELRARQQMELDEVHRRVKTALA 932
Cdd:pfam15921 561 DKVIEILRQQIENM-------TQLVGQHGRTAGAMQVEKA-QLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLEL 632
|
490 500 510
....*....|....*....|....*....|.
gi 1958659905 933 RKEAAVNSLRKQHEAAEKRADHLEELLEQHK 963
Cdd:pfam15921 633 EKVKLVNAGSERLRAVKDIKQERDQLLNEVK 663
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
671-917 |
1.87e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 671 QEQRALEQQRRRLYTEVAEEKERLgQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEqerrhQMELKALKDQLE 750
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKEL-AALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-----EAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 751 AERQAwvascakkeeawLLTRERELKEEIRK----GRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSE 826
Cdd:COG4942 94 ELRAE------------LEAQKEELAELLRAlyrlGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 827 LEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLrvvntqmcseraslaQVVRQEFAEQLAASQEETQRVK 906
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARL---------------EKELAELAAELAELQQEAEELE 226
|
250
....*....|.
gi 1958659905 907 AELAELRARQQ 917
Cdd:COG4942 227 ALIARLEAEAA 237
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
664-970 |
1.99e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.68 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 664 RLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMElk 743
Cdd:pfam12128 586 DLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQ-- 663
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 744 ALKDQLE---AERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEA---------------DMTLAKEES 805
Cdd:pfam12128 664 SEKDKKNkalAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYwqvvegaldaqlallKAAIAARRS 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 806 ERAAEnrVKRVRDKYETELSELEQSERKLQERCTELKGRlgeaegeKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQ 885
Cdd:pfam12128 744 GAKAE--LKALETWYKRDLASLGVDPDVIAKLKREIRTL-------ERKIERIAVRRQEVLRYFDWYQETWLQRRPRLAT 814
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 886 VVRQ------EFAEQLAASQEETQRVKAELAELRA---RQQMELDEVHRRVK---TALARKEAAVNSLRKQHEAAEkRAD 953
Cdd:pfam12128 815 QLSNieraisELQQQLARLIADTKLRRAKLEMERKaseKQQVRLSENLRGLRcemSKLATLKEDANSEQAQGSIGE-RLA 893
|
330
....*....|....*..
gi 1958659905 954 HLEELLEQHKGPSLSSK 970
Cdd:pfam12128 894 QLEDLKLKRDYLSESVK 910
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
463-918 |
2.47e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 2.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 463 LKLELEEKKQAmvlLQRALAQQRDLATRRVKETEKELsRQLRQQKEQYEatiqrhlsfidQLIEDKKVLSEKCEAVVAEL 542
Cdd:COG4717 47 LLERLEKEADE---LFKPQGRKPELNLKELKELEEEL-KEAEEKEEEYA-----------ELQEELEELEEELEELEAEL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 543 KQGDQRcRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRglEPEIQKLIAKHKQEVRRLRGLHEA 622
Cdd:COG4717 112 EELREE-LEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEE--LEELEAELAELQEELEELLEQLSL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 623 ELQQREEQAAQRHLRQAEELREHlererealgQQERERAQQRLEQhLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQR 702
Cdd:COG4717 189 ATEEELQDLAEELEELQQRLAEL---------EEELEEAQEELEE-LEEELEQLENELEAAALEERLKEARLLLLIAAAL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 703 VELEELRQQLEESSAA------------------LTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKE 764
Cdd:COG4717 259 LALLGLGGSLLSLILTiagvlflvlgllallfllLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEE 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 765 EAWLLTRERELKEEIRKGRDQEIELVIHRLE----ADMTLAKEESERAAENRVKRVRdKYETELSELEQSERKLQERCTE 840
Cdd:COG4717 339 LLELLDRIEELQELLREAEELEEELQLEELEqeiaALLAEAGVEDEEELRAALEQAE-EYQELKEELEELEEQLEELLGE 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 841 LKGRLGEAEGE--KERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKAELAELRARQQM 918
Cdd:COG4717 418 LEELLEALDEEelEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKL 497
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
490-963 |
3.28e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 3.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 490 RRVKETEKELsRQLRQQKEQYEATIQRhLSFIDQLIEDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQ-HELE--IKK 566
Cdd:PRK03918 207 REINEISSEL-PELREELEKLEKEVKE-LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEiEELEekVKE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 567 LKELM-SATEKIRREKWINEKTKKIKEI-----TVRGLEPEIQKLIAKHKQEVRRLRGLHE--AELQQREEQAAQRH--L 636
Cdd:PRK03918 285 LKELKeKAEEYIKLSEFYEEYLDELREIekrlsRLEEEINGIEERIKELEEKEERLEELKKklKELEKRLEELEERHelY 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 637 RQAEELREHLEREREALGQQERERAQQRLE------QHLEQEQRALEQQRRRLYTEVAEEKERL---------------- 694
Cdd:PRK03918 365 EEAKAKKEELERLKKRLTGLTPEKLEKELEelekakEEIEEEISKITARIGELKKEIKELKKAIeelkkakgkcpvcgre 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 695 ------GQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQL-EAERQAWVASCAKKEEAW 767
Cdd:PRK03918 445 lteehrKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLkELEEKLKKYNLEELEKKA 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 768 -----LLTRERELKEEIR--KGRDQEIELVIHRLEADMTLAKEESERAAE--NRVKRVRDKYETELSELEQSERKLQERC 838
Cdd:PRK03918 525 eeyekLKEKLIKLKGEIKslKKELEKLEELKKKLAELEKKLDELEEELAEllKELEELGFESVEELEERLKELEPFYNEY 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 839 TELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQvVRQEFaeqlaaSQEETQRVKAELAELRARqqm 918
Cdd:PRK03918 605 LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE-LEKKY------SEEEYEELREEYLELSRE--- 674
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 1958659905 919 eldevhrrvktaLARKEAAVNSLRKQHEAAEKRADHLEELLEQHK 963
Cdd:PRK03918 675 ------------LAGLRAELEELEKRREEIKKTLEKLKEELEERE 707
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
462-789 |
4.94e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 4.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 462 RLKLELEEKKQAMVLLQRALAQQ---RDLATRRVKETEKELSRQ---LRQQKEQYE---ATIQRHLSFIDQLIEDkkvLS 532
Cdd:TIGR02169 188 RLDLIIDEKRQQLERLRREREKAeryQALLKEKREYEGYELLKEkeaLERQKEAIErqlASLEEELEKLTEEISE---LE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 533 EKCEAVVAELKQgdqrCRERVAQVQEQHELEIK-KLKELMSATEKIRRekwinekTKKIKEITVRGLEPEIQKLIAkhkq 611
Cdd:TIGR02169 265 KRLEEIEQLLEE----LNKKIKDLGEEEQLRVKeKIGELEAEIASLER-------SIAEKERELEDAEERLAKLEA---- 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 612 EVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYtEVAEEK 691
Cdd:TIGR02169 330 EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN-ELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 692 ERLGQQAARQRVELEELRQQLEESSAALTrALRAEFERSREEQERRHQmELKALKDQLEAERQAWVA------------S 759
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKIN-ELEEEKEDKALEIKKQEW-KLEQLAADLSKYEQELYDlkeeydrvekelS 486
|
330 340 350
....*....|....*....|....*....|
gi 1958659905 760 CAKKEEAWLLTRERELKEEIRKGRDQEIEL 789
Cdd:TIGR02169 487 KLQRELAEAEAQARASEERVRGGRAVEEVL 516
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
450-964 |
5.18e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 5.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 450 LELGSEGTTSVMRLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRqqkeqyEATIQRHLSFIDQLIEDKK 529
Cdd:TIGR00606 431 IRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAER------ELSKAEKNSLTETLKKEVK 504
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 530 VLSEKCEAVVAELKQGDQRCRERVAQVQEQHELEIKKlKELMSATEKIRREKW--INEKTKKIKEI-TVRGLEPEIQKLI 606
Cdd:TIGR00606 505 SLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLT-KDKMDKDEQIRKIKSrhSDELTSLLGYFpNKKQLEDWLHSKS 583
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 607 AKHKQEVRRLRGLHE--AELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQ--EQRALEQQRRR 682
Cdd:TIGR00606 584 KEINQTRDRLAKLNKelASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKssKQRAMLAGATA 663
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 683 LYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAK 762
Cdd:TIGR00606 664 VYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKE 743
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 763 KEEAWLLTRERELKEEIRKGR------DQEIELVIHRLEA------DMTLAKEESERAAENRVKRVRDKYETELSELEQS 830
Cdd:TIGR00606 744 KEIPELRNKLQKVNRDIQRLKndieeqETLLGTIMPEEESakvcltDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRT 823
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 831 ERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVV--RQEFAEQLAASQEETQRVKAE 908
Cdd:TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLqrRQQFEEQLVELSTEVQSLIRE 903
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958659905 909 LAElrARQQMELDEVHRrvKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQHKG 964
Cdd:TIGR00606 904 IKD--AKEQDSPLETFL--EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHG 955
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
438-837 |
5.48e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.27 E-value: 5.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 438 RESLVLEAGPRSLELGSEGTTSVMRLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRH 517
Cdd:pfam02463 630 KDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREK 709
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 518 LSFIDQLIEDKKVLSEKCEAVVAELKQGDQRcrervaqvqEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRG 597
Cdd:pfam02463 710 EELKKLKLEAEELLADRVQEAQDKINEELKL---------LKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEER 780
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 598 LEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQE-QRAL 676
Cdd:pfam02463 781 EKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEElERLE 860
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 677 EQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAErqaw 756
Cdd:pfam02463 861 EEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEE---- 936
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 757 vascakkeeawllTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETELSELEQSERKLQE 836
Cdd:pfam02463 937 -------------PEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEE 1003
|
.
gi 1958659905 837 R 837
Cdd:pfam02463 1004 K 1004
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
668-958 |
5.66e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 5.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 668 HLEQEQRALEQQRRRLYTEVAEEkERLGQQAARQRVELEElRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKD 747
Cdd:pfam17380 276 HIVQHQKAVSERQQQEKFEKMEQ-ERLRQEKEEKAREVER-RRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERI 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 748 QLEaERQAWVASCAKKEEAWLLTRERELkEEIRKGRDQEIELVIHRLEADMTLAKEESER---AAENRVKRVRDKYETEL 824
Cdd:pfam17380 354 RQE-ERKRELERIRQEEIAMEISRMREL-ERLQMERQQKNERVRQELEAARKVKILEEERqrkIQQQKVEMEQIRAEQEE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 825 SELEQSERKLQERCTELKgRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQ----VVRQEFAEQLAASQE 900
Cdd:pfam17380 432 ARQREVRRLEEERAREME-RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEqrrkILEKELEERKQAMIE 510
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958659905 901 ETQRVKAELAELRARQQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEEL 958
Cdd:pfam17380 511 EERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL 568
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
807-961 |
5.79e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 5.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 807 RAAENRVKRVRDKY-----ETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLrVVNTQMCSERA 881
Cdd:COG3206 192 EEAEAALEEFRQKNglvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL-LQSPVIQQLRA 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 882 SLAQVVRQ--EFAEQLAASQEETQRVKAELAELRARQQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELL 959
Cdd:COG3206 271 QLAELEAElaELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE 350
|
..
gi 1958659905 960 EQ 961
Cdd:COG3206 351 AE 352
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
801-957 |
5.97e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 5.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 801 AKEESERAAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDlRVVNTQMCSER 880
Cdd:COG4942 41 KELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE-LLRALYRLGRQ 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 881 ASLAQVV---------------------RQEFAEQLAASQEETQRVKAELAELRARQQ---MELDEVHRRVKTALARKEA 936
Cdd:COG4942 120 PPLALLLspedfldavrrlqylkylapaRREQAEELRADLAELAALRAELEAERAELEallAELEEERAALEALKAERQK 199
|
170 180
....*....|....*....|.
gi 1958659905 937 AVNSLRKQHEAAEKRADHLEE 957
Cdd:COG4942 200 LLARLEKELAELAAELAELQQ 220
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
601-796 |
7.05e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 7.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 601 EIQKLIAKHKQEVRRL---RGLHEAELQQREEQAAQRHLRQAEELREHLEREreALGQQERERAQQRLEQhLEQEQRALE 677
Cdd:COG4913 239 RAHEALEDAREQIELLepiRELAERYAAARERLAELEYLRAALRLWFAQRRL--ELLEAELEELRAELAR-LEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 678 QQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALR--AEFERSREEQERRHQMELKALKDQLEAERQA 755
Cdd:COG4913 316 ARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRArlEALLAALGLPLPASAEEFAALRAEAAALLEA 395
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958659905 756 WVAscakkEEAWLLTRERELKEEIRKGRDQ--EIELVIHRLEA 796
Cdd:COG4913 396 LEE-----ELEALEEALAEAEAALRDLRRElrELEAEIASLER 433
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
598-917 |
1.31e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 598 LEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALE 677
Cdd:pfam02463 175 LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 678 QQRRRLYTEVAEEKERLGQQ----AARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAER 753
Cdd:pfam02463 255 SSKQEIEKEEEKLAQVLKENkeeeKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEK 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 754 QAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYETE---LSELEQS 830
Cdd:pfam02463 335 EEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEkeaQLLLELA 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 831 ERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKAELA 910
Cdd:pfam02463 415 RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQK 494
|
....*..
gi 1958659905 911 ELRARQQ 917
Cdd:pfam02463 495 LEERSQK 501
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
594-751 |
1.37e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 594 TVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQ 673
Cdd:COG1196 621 TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958659905 674 RALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEA 751
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
657-963 |
1.38e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 657 ERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQER 736
Cdd:pfam02463 191 DLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQV 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 737 RHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKgrDQEIELVIHRLEADMTLAKEESERAaenrvkrv 816
Cdd:pfam02463 271 LKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEK--LKESEKEKKKAEKELKKEKEEIEEL-------- 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 817 rdkyETELSELEqserklqerctELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEFAEQLA 896
Cdd:pfam02463 341 ----EKELKELE-----------IKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEK 405
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958659905 897 ASQEETQRVKAELAELRARQQMELDEvhrrVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQHK 963
Cdd:pfam02463 406 EAQLLLELARQLEDLLKEEKKEELEI----LEEEEESIELKQGKLTEEKEELEKQELKLLKDELELK 468
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
464-963 |
1.46e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 464 KLELEEKKQAMVLLQRALAQQRDlatrrvKETEKELSRQLRQQKEQYEATIQRhlsfidQLIEDKKVLSEKCEAVVAELK 543
Cdd:TIGR00618 365 TSIREISCQQHTLTQHIHTLQQQ------KTTLTQKLQSLCKELDILQREQAT------IDTRTSAFRDLQGQLAHAKKQ 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 544 QGDQRCRERVAQVQEQHELEIKKLKELMsATEKIRREKWINEKTKKIKEITVRglEPEIQKLIAKHKQEVRRLRGLHEAE 623
Cdd:TIGR00618 433 QELQQRYAELCAAAITCTAQCEKLEKIH-LQESAQSLKEREQQLQTKEQIHLQ--ETRKKAVVLARLLELQEEPCPLCGS 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 624 LQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQrrrlyTEVAEEKERLGQQAARQRV 703
Cdd:TIGR00618 510 CIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQM-----QEIQQSFSILTQCDNRSKE 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 704 ELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAwvascAKKEEAWLLTRERELKEEIRKGR 783
Cdd:TIGR00618 585 DIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQ-----CSQELALKLTALHALQLTLTQER 659
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 784 DQEIELVIHRLEADMTLAKEESERAAENRVKRVRDKYET----------ELSELEQSERKLQERCTELKGRLGEAEGEKE 853
Cdd:TIGR00618 660 VREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMlaqcqtllreLETHIEEYDREFNEIENASSSLGSDLAARED 739
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 854 RLQSLLRQ---------KEKELDDLR-----VVNTQMCSERASLAQVV------RQEFAEQLAASQEETQRVKAELAELR 913
Cdd:TIGR00618 740 ALNQSLKElmhqartvlKARTEAHFNnneevTAALQTGAELSHLAAEIqffnrlREEDTHLLKTLEAEIGQEIPSDEDIL 819
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1958659905 914 ARQQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQHK 963
Cdd:TIGR00618 820 NLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
619-942 |
1.71e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.71 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 619 LHEAELQQREEQAAQRHLRQAEELREHLEREREALGQ--QERERAQQRLEQhLEQEQRALEQQRRRLyTEVAEEKERLGQ 696
Cdd:COG3096 895 LEELREELDAAQEAQAFIQQHGKALAQLEPLVAVLQSdpEQFEQLQADYLQ-AKEQQRRLKQQIFAL-SEVVQRRPHFSY 972
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 697 QAARQRVE-----LEELRQQLEESSAALTRALRAefersreeqerrhqmeLKALKDQLEAERQAWVAscakkeeawlLTR 771
Cdd:COG3096 973 EDAVGLLGensdlNEKLRARLEQAEEARREAREQ----------------LRQAQAQYSQYNQVLAS----------LKS 1026
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 772 ERELKEEIRKGRDQEIELVIHRLEADMtlakeeSERAAENRvkrvrdkyetelSELEQSERKLQERCTELKGRLGEAEGE 851
Cdd:COG3096 1027 SRDAKQQTLQELEQELEELGVQADAEA------EERARIRR------------DELHEELSQNRSRRSQLEKQLTRCEAE 1088
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 852 KERLQSLLRQKEKELDDLRvvnTQMCSERASLAQVVRqefaeqLAA-SQEETQRVKAELAELRARQQME-LDEVHRRVKT 929
Cdd:COG3096 1089 MDSLQKRLRKAERDYKQER---EQVVQAKAGWCAVLR------LARdNDVERRLHRRELAYLSADELRSmSDKALGALRL 1159
|
330
....*....|...
gi 1958659905 930 ALARKEAAVNSLR 942
Cdd:COG3096 1160 AVADNEHLRDALR 1172
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
773-956 |
1.72e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 773 RELKEEIRKGRDQeielvIHRLEAdmtlAKEESERAAENRVKRVRDKYETELSELEQSERK---LQERCTELKGRLGEAE 849
Cdd:COG4913 238 ERAHEALEDAREQ-----IELLEP----IRELAERYAAARERLAELEYLRAALRLWFAQRRlelLEAELEELRAELARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 850 GEKERLQSLLRQKEKELDDLRV------------VNTQMCSERASLAQV--VRQEFAEQLAASQEETQRVKAELAELRAR 915
Cdd:COG4913 309 AELERLEARLDALREELDELEAqirgnggdrleqLEREIERLERELEERerRRARLEALLAALGLPLPASAEEFAALRAE 388
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1958659905 916 ---QQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLE 956
Cdd:COG4913 389 aaaLLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
462-710 |
2.05e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 462 RLKLELEEKKQAMVLLQRALaqqrDLATRRVKETEKE---LSRQLRQQKEQYEAtIQRHLSFIDQLIEDKKVLSEKCEAV 538
Cdd:TIGR02169 692 SLQSELRRIENRLDELSQEL----SDASRKIGEIEKEieqLEQEEEKLKERLEE-LEEDLSSLEQEIENVKSELKELEAR 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 539 VAELKQGDQRCRERVAQVqEQHELE--IKKLKELMSATEKIRR--EKWINEKTKKIKEITVRG--LEPEIQkliakHKQE 612
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDL-EARLSHsrIPEIQAELSKLEEEVSriEARLREIEQKLNRLTLEKeyLEKEIQ-----ELQE 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 613 VRRLRGLHEAELQQREEqAAQRHLRQAEELREHLEREREALGQQERERAQQRLEqhLEQEQRALEQQRRRLYTEVAEEKE 692
Cdd:TIGR02169 841 QRIDLKEQIKSIEKEIE-NLNGKKEELEEELEELEAALRDLESRLGDLKKERDE--LEAQLRELERKIEELEAQIEKKRK 917
|
250
....*....|....*...
gi 1958659905 693 RLGQQAARQRVELEELRQ 710
Cdd:TIGR02169 918 RLSELKAKLEALEEELSE 935
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
462-823 |
3.04e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 3.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 462 RLKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELsRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAE 541
Cdd:COG4717 118 LEKLEKLLQLLPLYQELEALEAELAELPERLEELEERL-EELRELEEELEELEAELAELQEELEELLEQLSLATEEELQD 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 542 LKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKE-----------ITVRGLEPEI-------- 602
Cdd:COG4717 197 LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEarlllliaaalLALLGLGGSLlsliltia 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 603 --------------------QKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQ 662
Cdd:COG4717 277 gvlflvlgllallflllareKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 663 QRLEQHLEQEQraLEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMEL 742
Cdd:COG4717 357 EELEEELQLEE--LEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEEL 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 743 KALKDQLEAerqawvascAKKEEAWLLTRERELKEEIRK----GRDQEIELVIHRLEADMTLAKEE--SERAAENRVKRV 816
Cdd:COG4717 435 EELEEELEE---------LEEELEELREELAELEAELEQleedGELAELLQELEELKAELRELAEEwaALKLALELLEEA 505
|
....*..
gi 1958659905 817 RDKYETE 823
Cdd:COG4717 506 REEYREE 512
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
526-856 |
3.96e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.12 E-value: 3.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 526 EDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKL 605
Cdd:pfam07888 62 ERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 606 IAK---HKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRR 682
Cdd:pfam07888 142 TQRvleRETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQK 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 683 LYTevAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKAlkdqLEAERQAWVASCAK 762
Cdd:pfam07888 222 LTT--AHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQA----AQLTLQLADASLAL 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 763 KEEAWLLTRERE-LKEEIRKGRDQEIELVIHRLEADMTLAKEESER-AAENRVKRVRDKYETELSEleqSERKLQerctE 840
Cdd:pfam07888 296 REGRARWAQEREtLQQSAEADKDRIEKLSAELQRLEERLQEERMEReKLEVELGREKDCNRVQLSE---SRRELQ----E 368
|
330
....*....|....*.
gi 1958659905 841 LKGRLGEAEGEKERLQ 856
Cdd:pfam07888 369 LKASLRVAQKEKEQLQ 384
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
655-865 |
4.77e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 4.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 655 QQERERAQQRLEQhLEQEQRALEQQRRRLYTEVAEEKERLG---QQAARQRVELEELRQQLEESSAALTRALRAEFERSR 731
Cdd:COG4942 33 QQEIAELEKELAA-LKKEEKALLKQLAALERRIAALARRIRaleQELAALEAELAELEKEIAELRAELEAQKEELAELLR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 732 EEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAaen 811
Cdd:COG4942 112 ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERA--- 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958659905 812 RVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKE 865
Cdd:COG4942 189 ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
463-906 |
4.88e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 4.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 463 LKLELEEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQK---EQYEATIQRHLSFIDQLIEDKKVLSEKC---- 535
Cdd:TIGR00618 435 LQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEqihLQETRKKAVVLARLLELQEEPCPLCGSCihpn 514
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 536 -EAVVAELKQGDQRCRERVAQVQEQHELEIKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVR 614
Cdd:TIGR00618 515 pARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITV 594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 615 RLRGLHEAELQQREEQAAQRHlrqaeelrEHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERL 694
Cdd:TIGR00618 595 RLQDLTEKLSEAEDMLACEQH--------ALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALS 666
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 695 GQQaarQRVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEeawLLTRERE 774
Cdd:TIGR00618 667 IRV---LPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSD---LAAREDA 740
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 775 LKEEIRKGRDQEIELVIHRLEADMTlaKEESERAAENRVkrvrDKYETELSELEQSERKLQERCTELKGRLGEAEGE-KE 853
Cdd:TIGR00618 741 LNQSLKELMHQARTVLKARTEAHFN--NNEEVTAALQTG----AELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEiPS 814
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1958659905 854 RLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQ--EFAEQLAASQEETQRVK 906
Cdd:TIGR00618 815 DEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQllKYEECSKQLAQLTQEQA 869
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
704-962 |
5.68e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 5.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 704 ELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRkgr 783
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELA--- 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 784 dqeielvihRLEADMTLAkeeseraaenrvkrvrdkyETELSELEQSERKLQERCTELKG-RLGEAEGEKERLQSLLRQK 862
Cdd:COG4913 306 ---------RLEAELERL-------------------EARLDALREELDELEAQIRGNGGdRLEQLEREIERLERELEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 863 EKELDDLRvvntQMCSERASLAQVVRQEFAEQLAASQEETQRVKAELAELRARQQmELDEVHRRVKTALARKEAAVNSLR 942
Cdd:COG4913 358 ERRRARLE----ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALA-EAEAALRDLRRELRELEAEIASLE 432
|
250 260
....*....|....*....|
gi 1958659905 943 KQHEAAEKRADHLEELLEQH 962
Cdd:COG4913 433 RRKSNIPARLLALRDALAEA 452
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
410-714 |
7.14e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 7.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 410 LLSEAKLQSIMTFLDEMEKSGQERPAPWRESLVLEAGPRSLELGSEGTTSVMRLKLELEEKKQAMVL------LQRALAQ 483
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQnivvedDEVAAAA 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 484 QRDLATRRVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQHELE 563
Cdd:COG1196 563 IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTL 642
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 564 IKKLKELMSATEKIRREKWINEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAeelr 643
Cdd:COG1196 643 AGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE---- 718
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958659905 644 ehlererealgQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEE 714
Cdd:COG1196 719 -----------EELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
862-959 |
7.73e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.53 E-value: 7.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 862 KEKELDDLRVVNTQMCSERASLAQVVRQEFAEQLAASQEETQRVKAELAELRARQQMELDEVH--RRVKTALARKEAAVN 939
Cdd:COG0542 409 KPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEeiQELKEELEQRYGKIP 488
|
90 100
....*....|....*....|
gi 1958659905 940 SLRKQHEAAEKRADHLEELL 959
Cdd:COG0542 489 ELEKELAELEEELAELAPLL 508
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
504-865 |
8.08e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 8.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 504 RQQKEQYEATIQRHLSfidQLIEDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQHELEIKKLKELmsatEKIRREkwi 583
Cdd:pfam17380 287 RQQQEKFEKMEQERLR---QEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMEREREL----ERIRQE--- 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 584 nEKTKKIKEITVRGLEPEIQKLiakhkQEVRRLrglhEAELQQREEQAAQRhLRQAEELREHLEREREALGQQERERAQQ 663
Cdd:pfam17380 357 -ERKRELERIRQEEIAMEISRM-----RELERL----QMERQQKNERVRQE-LEAARKVKILEEERQRKIQQQKVEMEQI 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 664 RLEQhleqeQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESsaaltRALRAEFERSREEQERRHQMELK 743
Cdd:pfam17380 426 RAEQ-----EEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEER-----KRKKLELEKEKRDRKRAEEQRRK 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 744 ALKDQLEAERQAWVAscakkeeawlltrerelKEEIRKGRDQEIElvihrlEADMTLAKEESERAAENRVKRvrdkyETE 823
Cdd:pfam17380 496 ILEKELEERKQAMIE-----------------EERKRKLLEKEME------ERQKAIYEEERRREAEEERRK-----QQE 547
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1958659905 824 LSELEQSERKLQeRCTELKGRLGEAEGEKERLQSLLRQKEKE 865
Cdd:pfam17380 548 MEERRRIQEQMR-KATEERSRLEAMEREREMMRQIVESEKAR 588
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
627-962 |
8.11e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 8.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 627 REEQAAQRHLRQAEELREHLEREREAL-GQQERERAQQRLEQHLEQEQRALEQ--QRRRLYTEVAEEKERLGQQAARQRV 703
Cdd:PRK04863 276 RHANERRVHLEEALELRRELYTSRRQLaAEQYRLVEMARELAELNEAESDLEQdyQAASDHLNLVQTALRQQEKIERYQA 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 704 ELEELRQQLEESSAAltRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVA------------SCAKKEEAWL--- 768
Cdd:PRK04863 356 DLEELEERLEEQNEV--VEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVqqtraiqyqqavQALERAKQLCglp 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 769 -LTRErELKEEIRKGRDQEIELVIHRLEADMTL-----AKEESERAAEnRVKRVRDkyETELSELEQSERKLQERCTELK 842
Cdd:PRK04863 434 dLTAD-NAEDWLEEFQAKEQEATEELLSLEQKLsvaqaAHSQFEQAYQ-LVRKIAG--EVSRSEAWDVARELLRRLREQR 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 843 GRLGEAEGEKERLQSLLRQKEKELDDLRVVNT-QMCSERASLAQVVRQEFAEQLAASQEETQRVKAELAELRARQQMELD 921
Cdd:PRK04863 510 HLAEQLQQLRMRLSELEQRLRQQQRAERLLAEfCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLE 589
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1958659905 922 EVHRRVKTALARK------EAAVNSLRKQHEAAEKRADHLEELLEQH 962
Cdd:PRK04863 590 QLQARIQRLAARApawlaaQDALARLREQSGEEFEDSQDVTEYMQQL 636
|
|
| PHA03252 |
PHA03252 |
DNA packaging tegument protein UL25; Provisional |
788-849 |
1.04e-03 |
|
DNA packaging tegument protein UL25; Provisional
Pssm-ID: 223024 Cd Length: 589 Bit Score: 42.78 E-value: 1.04e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958659905 788 ELVIHRLEADMTLA-KEESERAAENRVKRVRDKyeTELSELEqseRKLQERCTELKGRLGEAE 849
Cdd:PHA03252 28 EEDLRRLRDDSALRlRRYREDLLRDRLLRRRLG--EELDDLQ---KRLQTECEDLRSRVSEAE 85
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
461-958 |
1.36e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 461 MRLKLEL-EEKKQAMVLLQRALAQQRDLATRRVKETEKELSRQLRQQKEQYeATIQRHLSFIDQLIEDKKVLSEKCEAVV 539
Cdd:TIGR00618 245 LTQKREAqEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPL-AAHIKAVTQIEQQAQRIHTELQSKMRSR 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 540 AELKQGDQRCRERVAQVQEQHELeikkLKELMSATEKIRREkwiNEKTKKIKEITVRGLEPEiqkliakhkQEVRRLRGL 619
Cdd:TIGR00618 324 AKLLMKRAAHVKQQSSIEEQRRL----LQTLHSQEIHIRDA---HEVATSIREISCQQHTLT---------QHIHTLQQQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 620 HEAELQQreEQAAQRHLRQAEELREHLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAA 699
Cdd:TIGR00618 388 KTTLTQK--LQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESA 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 700 RQRVELEELRQQLEESSAALTRalRAEFERSREEQERRHQMELKALKDQLEAERQAWVASCAKKEEAW-LLTRERELKEE 778
Cdd:TIGR00618 466 QSLKEREQQLQTKEQIHLQETR--KKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQrGEQTYAQLETS 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 779 IRKGRDQEIELVIHRLEADmtlAKEESERAAENRVKRVRDKYETELSELEQSERKLQErctELKGRLGEAEGEKERLQSL 858
Cdd:TIGR00618 544 EEDVYHQLTSERKQRASLK---EQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQD---LTEKLSEAEDMLACEQHAL 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 859 LRQKEKELDDLRVVNT-QMCSERASLAQVVRQEFAEQLAASQEETQ--RVKAELAELRARQQMELDEVHRRVKTALARKE 935
Cdd:TIGR00618 618 LRKLQPEQDLQDVRLHlQQCSQELALKLTALHALQLTLTQERVREHalSIRVLPKELLASRQLALQKMQSEKEQLTYWKE 697
|
490 500
....*....|....*....|....*.
gi 1958659905 936 AAVNS---LRKQHEAAEKRADHLEEL 958
Cdd:TIGR00618 698 MLAQCqtlLRELETHIEEYDREFNEI 723
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
822-934 |
1.48e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.88 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 822 TELSELEQSERK-LQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEFA------EQ 894
Cdd:PRK09039 66 ADLLSLERQGNQdLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAqvellnQQ 145
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1958659905 895 LAASQEETQRVKAELAELRAR---QQMELDEVHRRVKTALARK 934
Cdd:PRK09039 146 IAALRRQLAALEAALDASEKRdreSQAKIADLGRRLNVALAQR 188
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
655-863 |
1.49e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 655 QQERERAQQRLEQHLEQEQRALEQQRRRLY--------TEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAE 726
Cdd:COG3206 170 REEARKALEFLEEQLPELRKELEEAEAALEefrqknglVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 727 FERSREEQERRHQMELKALKDQLeaerqawvascakkeeawlLTRERELKEEIRKGRDQEIELVihRLEADMtlakEESE 806
Cdd:COG3206 250 GSGPDALPELLQSPVIQQLRAQL-------------------AELEAELAELSARYTPNHPDVI--ALRAQI----AALR 304
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958659905 807 RAAENRVKRVRDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKE 863
Cdd:COG3206 305 AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVE 361
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
652-963 |
1.79e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 652 ALGQQERERAQQRLEQ----HL--------EQEQRALEQQRRrlytEVAEEKERLGQQAARQRVELEELRQQLEessaal 719
Cdd:COG3096 805 SFDVQKLQRLHQAFSQfvggHLavafapdpEAELAALRQRRS----ELERELAQHRAQEQQLRQQLDQLKEQLQ------ 874
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 720 trALRAEFERSREEQERRHQMELKALKDQLEA--ERQAWVASCAKKeeawlLTRERELKEEIRKGRDQEIELVIHRLEAD 797
Cdd:COG3096 875 --LLNKLLPQANLLADETLADRLEELREELDAaqEAQAFIQQHGKA-----LAQLEPLVAVLQSDPEQFEQLQADYLQAK 947
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 798 MTL--AKEESERAAENRVKRVRDKYETELSELEQSeRKLQERcteLKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQ 875
Cdd:COG3096 948 EQQrrLKQQIFALSEVVQRRPHFSYEDAVGLLGEN-SDLNEK---LRARLEQAEEARREAREQLRQAQAQYSQYNQVLAS 1023
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 876 MCSERASLAQVVR---QEFAE---QLAASQEET-----QRVKAELAELRARQqmeldevhRRVKTALARKEAAVNSLRKQ 944
Cdd:COG3096 1024 LKSSRDAKQQTLQeleQELEElgvQADAEAEERarirrDELHEELSQNRSRR--------SQLEKQLTRCEAEMDSLQKR 1095
|
330
....*....|....*....
gi 1958659905 945 HEAAEKRADHLEELLEQHK 963
Cdd:COG3096 1096 LRKAERDYKQEREQVVQAK 1114
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
463-957 |
1.95e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 463 LKLELEEKKQAMVLLQRaLAQQRDLATRrVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLsekcEAVVAEL 542
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFP-LDQYTQLALM-EFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVL----EKELKHL 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 543 KQGDQRCRERVAQVQEQHEleikklkelmSATEKIRREKWINEKTKKIKEItvRGLEPEIQKLIAKHKQEVRRLR-GLHE 621
Cdd:TIGR00618 232 REALQQTQQSHAYLTQKRE----------AQEEQLKKQQLLKQLRARIEEL--RAQEAVLEETQERINRARKAAPlAAHI 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 622 AELQQREEQAAQRHLRqaeelrehlerereaLGQQERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQ 701
Cdd:TIGR00618 300 KAVTQIEQQAQRIHTE---------------LQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVA 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 702 RVELEELRQQLEESSAALTRALRAEFERSREEQERRHQMELKALKDQLEAERQAWVA-----SCAKKEEAWLLTRERELK 776
Cdd:TIGR00618 365 TSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDlqgqlAHAKKQQELQQRYAELCA 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 777 EEIRKGRDQEIELVIHRLEADMTL-AKEESERAAEN---RVKRVRDKYETELSELEQSERKLQERCTELKGRL---GEAE 849
Cdd:TIGR00618 445 AAITCTAQCEKLEKIHLQESAQSLkEREQQLQTKEQihlQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARqdiDNPG 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 850 GEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVRQEFAEQ--LAASQEETQRVKAELAELRARQQMELDEVHRRV 927
Cdd:TIGR00618 525 PLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQqsFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLS 604
|
490 500 510
....*....|....*....|....*....|
gi 1958659905 928 KTALARKEAAVNSLRKQHEAAEKRADHLEE 957
Cdd:TIGR00618 605 EAEDMLACEQHALLRKLQPEQDLQDVRLHL 634
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
583-721 |
2.11e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 583 INEKTKKIKEITVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREE--QAAQRHLRQAEELREHLERERealgqQERER 660
Cdd:PRK12704 36 AEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNelQKLEKRLLQKEENLDRKLELL-----EKREE 110
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958659905 661 AQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQA------ARQRVeLEELRQQLEESSAALTR 721
Cdd:PRK12704 111 ELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISgltaeeAKEIL-LEKVEEEARHEAAVLIK 176
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
610-723 |
2.20e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.86 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 610 KQEVRRLRglHEAELQQREEQAAQRHLRQAEELREHLERErealgQQERERAQQRLEQHLEQEQRALEQQRRrlytEVAE 689
Cdd:PRK11448 148 QQEVLTLK--QQLELQAREKAQSQALAEAQQQELVALEGL-----AAELEEKQQELEAQLEQLQEKAAETSQ----ERKQ 216
|
90 100 110
....*....|....*....|....*....|....
gi 1958659905 690 EKERLGQQAArQRVELEElrqqleessaALTRAL 723
Cdd:PRK11448 217 KRKEITDQAA-KRLELSE----------EETRIL 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
521-963 |
2.46e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 521 IDQLIEDKKVLSEKCEAVVAELKQgdqrcRERVAQVQEQHElEIKKLKELMSATEKIRR--EKWINEKTKKIKEITVRGL 598
Cdd:COG4913 227 ADALVEHFDDLERAHEALEDAREQ-----IELLEPIRELAE-RYAAARERLAELEYLRAalRLWFAQRRLELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 599 EPEIQKLIAKhKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQERERAQ-----QRLEQHLEQEQ 673
Cdd:COG4913 301 RAELARLEAE-LERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARleallAALGLPLPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 674 RALEQQRRRLY---TEVAEEKERLGQQAARQRVELEELRQQLEEssaaLTRALRAEFERSREEQERRHQMeLKALKDQL- 749
Cdd:COG4913 380 EEFAALRAEAAallEALEEELEALEEALAEAEAALRDLRRELRE----LEAEIASLERRKSNIPARLLAL-RDALAEALg 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 750 EAERQAWVAsC-----AKKEEAW--------------LLTRERELKEEIRKGRDQEIELVIHRLEADMTLAKEESERAAE 810
Cdd:COG4913 455 LDEAELPFV-GelievRPEEERWrgaiervlggfaltLLVPPEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDP 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 811 NRVKRV--------RDKYETELS------------ELEQSERKL-------------------------------QERCT 839
Cdd:COG4913 534 DSLAGKldfkphpfRAWLEAELGrrfdyvcvdspeELRRHPRAItragqvkgngtrhekddrrrirsryvlgfdnRAKLA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 840 ELKGRLGEAEGEKERLQSLLRQKEKELDDLRvvntqmcSERASLAQVVRQEFAEQ-LAASQEETQRVKAELAELRARQQm 918
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQ-------ERREALQRLAEYSWDEIdVASAEREIAELEAELERLDASSD- 685
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1958659905 919 ELDEVHRRVKTALARKEAA---VNSLRKQHEAAEKRADHLEELLEQHK 963
Cdd:COG4913 686 DLAALEEQLEELEAELEELeeeLDELKGEIGRLEKELEQAEEELDELQ 733
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
478-837 |
3.04e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 3.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 478 QRALAQQRDLATRRVKETEKELSRQLRQQKEQYEATIQ------RHLSFIDQLIEDKKVLSEKCEA---VVAELKQGDQR 548
Cdd:PRK04863 301 QLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNlvqtalRQQEKIERYQADLEELEERLEEqneVVEEADEQQEE 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 549 CRERVaqvqEQHELEIKKLKELMS------------------ATEKIRREKWINEktkkIKEITVRGLEPEIQKLIAKHK 610
Cdd:PRK04863 381 NEARA----EAAEEEVDELKSQLAdyqqaldvqqtraiqyqqAVQALERAKQLCG----LPDLTADNAEDWLEEFQAKEQ 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 611 QEVRRLRglhEAELQQREEQAAQRHLRQAEELREHlerereALGQQERERAQQRLEQHLEQ--EQRALEQQRRRLYTEVA 688
Cdd:PRK04863 453 EATEELL---SLEQKLSVAQAAHSQFEQAYQLVRK------IAGEVSRSEAWDVARELLRRlrEQRHLAEQLQQLRMRLS 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 689 EEKERLGQQAARQRV----------------ELEELRQQLEESSAALTRALRaeFERSREEQERRHQMELKALKDQLEAE 752
Cdd:PRK04863 524 ELEQRLRQQQRAERLlaefckrlgknlddedELEQLQEELEARLESLSESVS--EARERRMALRQQLEQLQARIQRLAAR 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 753 RQAWVASCAKkeeawlLTRERELKEEIRKGRDQEIELVIHRLEadmtlakeeSERAAEnrvkRVRDKYETELSELEQSER 832
Cdd:PRK04863 602 APAWLAAQDA------LARLREQSGEEFEDSQDVTEYMQQLLE---------RERELT----VERDELAARKQALDEEIE 662
|
....*
gi 1958659905 833 KLQER 837
Cdd:PRK04863 663 RLSQP 667
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
480-868 |
3.20e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 480 ALAQQRDLATRRVKETEKELsRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQ 559
Cdd:PRK02224 311 AVEARREELEDRDEELRDRL-EECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEEL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 560 HElEIKKLKE-----------LMSATEKIRREKwiNEKTKKIKEI-----TVRGLEPEIQKLIAKHK-----QEVRRlrG 618
Cdd:PRK02224 390 EE-EIEELRErfgdapvdlgnAEDFLEELREER--DELREREAELeatlrTARERVEEAEALLEAGKcpecgQPVEG--S 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 619 LHEAELQQREEQAAQRHLRQAEELREhlererealgQQERERAQQRLEQHLEQEQRA--LEQQRRRLYTEVAEEKERLGQ 696
Cdd:PRK02224 465 PHVETIEEDRERVEELEAELEDLEEE----------VEEVEERLERAEDLVEAEDRIerLEERREDLEELIAERRETIEE 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 697 ---QAARQRVELEELRQQLEESSAALTRA-LRAEFERSREEQERRHQMELKALKDQLE--AERQAWVASCAKKEEawllt 770
Cdd:PRK02224 535 kreRAEELRERAAELEAEAEEKREAAAEAeEEAEEAREEVAELNSKLAELKERIESLEriRTLLAAIADAEDEIE----- 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 771 RERELKEEIRKGRDQEIELVIHRLEADMTLAKE-ESERAAENRVKRVRdkYETELSELEQSERKLQERCTELKGRLGEAE 849
Cdd:PRK02224 610 RLREKREALAELNDERRERLAEKRERKRELEAEfDEARIEEAREDKER--AEEYLEQVEEKLDELREERDDLQAEIGAVE 687
|
410
....*....|....*....
gi 1958659905 850 GEKERLQSlLRQKEKELDD 868
Cdd:PRK02224 688 NELEELEE-LRERREALEN 705
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
482-917 |
3.43e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 3.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 482 AQQRDLATRRVKETEKELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCeavvAELKQGDQRCRERVAQVQEQHE 561
Cdd:TIGR00618 62 RSLNSLYAAPSEAAFAELEFSLGTKIYRVHRTLRCTRSHRKTEQPEQLYLEQKK----GRGRILAAKKSETEEVIHDLLK 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 562 LEIKKLKELMSATEKiRREKWINEKTKKIKEITVRGLEPEIQKLIA-KHKQEVRRLRGlhEAELQQREEQAAQRHLRQAE 640
Cdd:TIGR00618 138 LDYKTFTRVVLLPQG-EFAQFLKAKSKEKKELLMNLFPLDQYTQLAlMEFAKKKSLHG--KAELLTLRSQLLTLCTPCMP 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 641 ELREHLEREREALGQQERErAQQRLEQHLEQEQRALEQQrrrlytevaEEKERLGQQAARQRVELEELRQQLEESSAALT 720
Cdd:TIGR00618 215 DTYHERKQVLEKELKHLRE-ALQQTQQSHAYLTQKREAQ---------EEQLKKQQLLKQLRARIEELRAQEAVLEETQE 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 721 RALRAEfersreeqerrhqmelKALKDQLEAERQAWVASCAKKEEAWLLTRERELKEEIRKGRD---QEIELVIHRLEAD 797
Cdd:TIGR00618 285 RINRAR----------------KAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAhvkQQSSIEEQRRLLQ 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 798 MTLAKEESERAAENRVKRVRDKYETELsELEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMC 877
Cdd:TIGR00618 349 TLHSQEIHIRDAHEVATSIREISCQQH-TLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLA 427
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1958659905 878 seRASLAQVVRQEFAEQL-AASQEETQRVKAELAELRARQQ 917
Cdd:TIGR00618 428 --HAKKQQELQQRYAELCaAAITCTAQCEKLEKIHLQESAQ 466
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
503-718 |
4.04e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 503 LRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKQgdqrcRERVAQVQEQHELEIKKLKELMSATEKIRREkw 582
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQ-----KNGLVDLSEEAKLLLQQLSELESQLAEARAE-- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 583 INEKTKKIKEI------------------TVRGLEPEIQKLIAKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELRE 644
Cdd:COG3206 235 LAEAEARLAALraqlgsgpdalpellqspVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRI 314
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958659905 645 HLEREREALGQQERERAQQRLEQHLEQEQRALEQQRRRLytevaeekERLGQQAARQRVELEELRQQLEESSAA 718
Cdd:COG3206 315 LASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL--------RRLEREVEVARELYESLLQRLEEARLA 380
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
810-947 |
4.40e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.97 E-value: 4.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 810 ENRVKRVRDKYETELSE-------LEQSERKLQERCTELKGRLGEAEGEKERLQSLLRQKEKELDDLRvvntqmcsERAs 882
Cdd:PRK00409 501 ENIIEEAKKLIGEDKEKlneliasLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL--------EEA- 571
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 883 laqvvRQEFAEQLAASQEETQRVKAELAELRARQQM-----ELDEVHRRVKTALARKEAAVNSLRKQHEA 947
Cdd:PRK00409 572 -----EKEAQQAIKEAKKEADEIIKELRQLQKGGYAsvkahELIEARKRLNKANEKKEKKKKKQKEKQEE 636
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
498-725 |
5.01e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 5.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 498 ELSRQLRQQKEQYEATIQRHLSFIDQLIEDKKVLSEKCEAVVAELKQGDQRCRERVAQVQEQhELEIKKLKELMSATEKi 577
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-EAELAELEKEIAELRA- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 578 RREKWINEKTKKIKEITVRGLEPEIQKLI-AKHKQEVRRLRGLHEAELQQREEQAAQRHLRQAEELREHLEREREALGQQ 656
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958659905 657 ERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLgQQAARQRVELEELRQQLEESSAALTRALRA 725
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAEL-AELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
657-918 |
5.26e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 657 ERERAQQRLEQHLEQEQRALEQQRRRLYTEVAEEKERLGQQAARQRVELEELRQQLEESSAALTRALRAefersREEQER 736
Cdd:pfam12128 269 SDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDA-----DIETAA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 737 RHQMELKALKDQLEAErqawvascaKKEEAWLLTRERELKEE---IRKGRDQEIELVIHRLEADMTLAKEESER---AAE 810
Cdd:pfam12128 344 ADQEQLPSWQSELENL---------EERLKALTGKHQDVTAKynrRRSKIKEQNNRDIAGIKDKLAKIREARDRqlaVAE 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 811 NRVKRV----RDKYETELSELEQSERKLQERCTELKGRLGEAEGEKERLQSlLRQKEKELDDLRVVNTQMCSERASLAQ- 885
Cdd:pfam12128 415 DDLQALeselREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQ-LENFDERIERAREEQEAANAEVERLQSe 493
|
250 260 270
....*....|....*....|....*....|....*
gi 1958659905 886 --VVRQEFAEQLAASQEETQRVKAELAELRARQQM 918
Cdd:pfam12128 494 lrQARKRRDQASEALRQASRRLEERQSALDELELQ 528
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
670-964 |
5.78e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 5.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 670 EQEQRALEQQRRRLYTEVAeekeRLGQQAARQRVELEELRQQLEessaaltrALRAEFERSREEQERRHQMELKALKDQL 749
Cdd:PRK04863 836 EAELRQLNRRRVELERALA----DHESQEQQQRSQLEQAKEGLS--------ALNRLLPRLNLLADETLADRVEEIREQL 903
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 750 EAERQAwvASCAKKEEAWLltreRELKEEIRKGRDQEIElvIHRLEADMTLAKEESERA-------AENRVKRVRDKYET 822
Cdd:PRK04863 904 DEAEEA--KRFVQQHGNAL----AQLEPIVSVLQSDPEQ--FEQLKQDYQQAQQTQRDAkqqafalTEVVQRRAHFSYED 975
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 823 ELSELEQsERKLQERcteLKGRLGEAEGEKERLQSLLRQKEKELDDLRVVNTQMCSERASLAQVVrQEFAEQLaasQEET 902
Cdd:PRK04863 976 AAEMLAK-NSDLNEK---LRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQML-QELKQEL---QDLG 1047
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958659905 903 QRVKAELAELRARQQMELDEVHRRVKTALARKEAAVNSLRKQHEAAEKRADHLE-------ELLEQHKG 964
Cdd:PRK04863 1048 VPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLErdyhemrEQVVNAKA 1116
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
636-960 |
6.46e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 6.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 636 LRQAEELREHLEREREALGQQERERAQQRLEQH----LEQEQRALEQQRRRLYTEV--AEEKERLGQQAARQ-------R 702
Cdd:COG3096 274 MRHANERRELSERALELRRELFGARRQLAEEQYrlveMARELEELSARESDLEQDYqaASDHLNLVQTALRQqekieryQ 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 703 VELEELRQQLEESSAAltRALRAEFERSREEQERRHQMELKALKDQLEAERQA----------WVASCAKKEEAWLLTRE 772
Cdd:COG3096 354 EDLEELTERLEEQEEV--VEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAldvqqtraiqYQQAVQALEKARALCGL 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 773 REL-----KEEIRKGRDQEIELVIHRLEADMTL-----AKEESERAAEnRVKRVRDkyETELSELEQSERKLQERCTELK 842
Cdd:COG3096 432 PDLtpenaEDYLAAFRAKEQQATEEVLELEQKLsvadaARRQFEKAYE-LVCKIAG--EVERSQAWQTARELLRRYRSQQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 843 GRLGEAEGEKERLQSlLRQKEKELDDLRVVNTQMC----SERASLAQVvrQEFAEQLAASQEETQRVKAELAELRARQQM 918
Cdd:COG3096 509 ALAQRLQQLRAQLAE-LEQRLRQQQNAERLLEEFCqrigQQLDAAEEL--EELLAELEAQLEELEEQAAEAVEQRSELRQ 585
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1958659905 919 ELDEVHRRVKtALARKEAAvnsLRKQHEAAEKRADHLEELLE 960
Cdd:COG3096 586 QLEQLRARIK-ELAARAPA---WLAAQDALERLREQSGEALA 623
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
771-965 |
9.67e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.02 E-value: 9.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 771 RERE-LKEEIRKGRDQEIELvihRLEADMTLAKEESERAAENRVkrvrdkyETELSELEQSERKLQERCTELKGRLGEAE 849
Cdd:PRK02224 272 REREeLAEEVRDLRERLEEL---EEERDDLLAEAGLDDADAEAV-------EARREELEDRDEELRDRLEECRVAAQAHN 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958659905 850 GEKERLQSLLRQKEKELDDLRvvntqmcsERASLAQVVRQEFAEQLAASQEETQRVKAELAELRAR------QQMELDEV 923
Cdd:PRK02224 342 EEAESLREDADDLEERAEELR--------EEAAELESELEEAREAVEDRREEIEELEEEIEELRERfgdapvDLGNAEDF 413
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1958659905 924 HRRVKTALARKEAAVNSLRKQHEAAEKRADHLEELLEQHKGP 965
Cdd:PRK02224 414 LEELREERDELREREAELEATLRTARERVEEAEALLEAGKCP 455
|
|
| |
