NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958660731|ref|XP_038942693|]
View 

protein VCF1 isoform X2 [Rattus norvegicus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FAM104 super family cl21257
Family 104; This family of proteins is found in eukaryotes. Proteins in this family are ...
 79-108 6.33e-09

Family 104; This family of proteins is found in eukaryotes. Proteins in this family are typically between 113 and 185 amino acids in length. There is a conserved SLQ sequence motif.


The actual alignment was detected with superfamily member pfam15434:

Pssm-ID: 464715  Cd Length: 109  Bit Score: 51.78  E-value: 6.33e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 1958660731  79 NGSDDDNHPPPQTKRSSRNPIFQDSWDTEV 108
Cdd:pfam15434   6 NGNEEDNHVLPQPKRSSRNTVLQDSWDTES 35
 
Name Accession Description Interval E-value
FAM104 pfam15434
Family 104; This family of proteins is found in eukaryotes. Proteins in this family are ...
 79-108 6.33e-09

Family 104; This family of proteins is found in eukaryotes. Proteins in this family are typically between 113 and 185 amino acids in length. There is a conserved SLQ sequence motif.


Pssm-ID: 464715  Cd Length: 109  Bit Score: 51.78  E-value: 6.33e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 1958660731  79 NGSDDDNHPPPQTKRSSRNPIFQDSWDTEV 108
Cdd:pfam15434   6 NGNEEDNHVLPQPKRSSRNTVLQDSWDTES 35
 
Name Accession Description Interval E-value
FAM104 pfam15434
Family 104; This family of proteins is found in eukaryotes. Proteins in this family are ...
 79-108 6.33e-09

Family 104; This family of proteins is found in eukaryotes. Proteins in this family are typically between 113 and 185 amino acids in length. There is a conserved SLQ sequence motif.


Pssm-ID: 464715  Cd Length: 109  Bit Score: 51.78  E-value: 6.33e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 1958660731  79 NGSDDDNHPPPQTKRSSRNPIFQDSWDTEV 108
Cdd:pfam15434   6 NGNEEDNHVLPQPKRSSRNTVLQDSWDTES 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH