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Conserved domains on  [gi|1958648654|ref|XP_038943258|]
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zinc finger protein 14 homolog isoform X3 [Rattus norvegicus]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 13416201)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0008270|GO:0003677
PubMed:  22803940|11361095|11179890|12665246|10940247
SCOP:  4003583

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
186-464 1.47e-08

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 56.63  E-value: 1.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 186 KPYECKECGKAFRVHQQLARHQRIHTGEKPYSCKD--CGKTFRQCTHLTRHQRLHTSEKLYECK---------------- 247
Cdd:COG5048    32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYsgCDKSFSRPLELSRHLRTHHNNPSDLNSkslplsnskassssls 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 248 ECGKAFVYGPDLRVHQKTHFGEKPYACKDCGKSFRICQQLTVHQSIHTGEKPYACK--------ECRKTFRLRQQLVRHQ 319
Cdd:COG5048   112 SSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTPQSNSLhpplpansLSKDPSSNLSLLISSN 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 320 RVHTHKRPYECLECWKTFSSYSQLISHESIH-VGERPYGCEECGKAFRLLSQLTQHRSIHTgeKPYECQECRKPFRLLSQ 398
Cdd:COG5048   192 VSTSIPSSSENSPLSSSYSIPSSSSDQNLENsSSSLPLTTNSQLSPKSLLSQSPSSLSSSD--SSSSASESPRSSLPTAS 269

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958648654 399 LTQHRSIHTGE-------KPHECKECGKTFRLYSFLSQHQR--IHTGE--RPYKCKE--CKKAFRQHSHLTQHQKIHSG 464
Cdd:COG5048   270 SQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTS 348
COG5048 super family cl34881
FOG: Zn-finger [General function prediction only];
102-234 1.30e-03

FOG: Zn-finger [General function prediction only];


The actual alignment was detected with superfamily member COG5048:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 41.22  E-value: 1.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 102 KFYECKECRKTFIRRSTLSQHLR--IHTGE--KPYKCKE--CGQPFRQRAHLIRHHKLHTGEKPYECK--DCGKAFTVL- 172
Cdd:COG5048   288 LPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTSISPAKEKllNSSSKFSPLl 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 173 -QELTQHQRLHTGEKP-----------------------------------YECKECGKAFRVHQQLARHQRIHTGEKPY 216
Cdd:COG5048   368 nNEPPQSLQQYKDLKNdkksetlsnscirnfkrdsnlslhiithlsfrpynCKNPPCSKSFNRHYNLIPHKKIHTNHAPL 447

                         170
                  ....*....|....*...
gi 1958648654 217 SCKDCGKtFRQCTHLTRH 234
Cdd:COG5048   448 LCSILKS-FRRDLDLSNH 464
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
186-464 1.47e-08

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 56.63  E-value: 1.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 186 KPYECKECGKAFRVHQQLARHQRIHTGEKPYSCKD--CGKTFRQCTHLTRHQRLHTSEKLYECK---------------- 247
Cdd:COG5048    32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYsgCDKSFSRPLELSRHLRTHHNNPSDLNSkslplsnskassssls 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 248 ECGKAFVYGPDLRVHQKTHFGEKPYACKDCGKSFRICQQLTVHQSIHTGEKPYACK--------ECRKTFRLRQQLVRHQ 319
Cdd:COG5048   112 SSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTPQSNSLhpplpansLSKDPSSNLSLLISSN 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 320 RVHTHKRPYECLECWKTFSSYSQLISHESIH-VGERPYGCEECGKAFRLLSQLTQHRSIHTgeKPYECQECRKPFRLLSQ 398
Cdd:COG5048   192 VSTSIPSSSENSPLSSSYSIPSSSSDQNLENsSSSLPLTTNSQLSPKSLLSQSPSSLSSSD--SSSSASESPRSSLPTAS 269

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958648654 399 LTQHRSIHTGE-------KPHECKECGKTFRLYSFLSQHQR--IHTGE--RPYKCKE--CKKAFRQHSHLTQHQKIHSG 464
Cdd:COG5048   270 SQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTS 348
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
102-234 1.30e-03

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 41.22  E-value: 1.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 102 KFYECKECRKTFIRRSTLSQHLR--IHTGE--KPYKCKE--CGQPFRQRAHLIRHHKLHTGEKPYECK--DCGKAFTVL- 172
Cdd:COG5048   288 LPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTSISPAKEKllNSSSKFSPLl 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 173 -QELTQHQRLHTGEKP-----------------------------------YECKECGKAFRVHQQLARHQRIHTGEKPY 216
Cdd:COG5048   368 nNEPPQSLQQYKDLKNdkksetlsnscirnfkrdsnlslhiithlsfrpynCKNPPCSKSFNRHYNLIPHKKIHTNHAPL 447

                         170
                  ....*....|....*...
gi 1958648654 217 SCKDCGKtFRQCTHLTRH 234
Cdd:COG5048   448 LCSILKS-FRRDLDLSNH 464
zf-H2C2_2 pfam13465
Zinc-finger double domain;
203-227 1.47e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.81  E-value: 1.47e-03
                          10        20
                  ....*....|....*....|....*
gi 1958648654 203 LARHQRIHTGEKPYSCKDCGKTFRQ 227
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
174-197 2.73e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.04  E-value: 2.73e-03
                          10        20
                  ....*....|....*....|....
gi 1958648654 174 ELTQHQRLHTGEKPYECKECGKAF 197
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSF 24
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
186-464 1.47e-08

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 56.63  E-value: 1.47e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 186 KPYECKECGKAFRVHQQLARHQRIHTGEKPYSCKD--CGKTFRQCTHLTRHQRLHTSEKLYECK---------------- 247
Cdd:COG5048    32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYsgCDKSFSRPLELSRHLRTHHNNPSDLNSkslplsnskassssls 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 248 ECGKAFVYGPDLRVHQKTHFGEKPYACKDCGKSFRICQQLTVHQSIHTGEKPYACK--------ECRKTFRLRQQLVRHQ 319
Cdd:COG5048   112 SSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTPQSNSLhpplpansLSKDPSSNLSLLISSN 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 320 RVHTHKRPYECLECWKTFSSYSQLISHESIH-VGERPYGCEECGKAFRLLSQLTQHRSIHTgeKPYECQECRKPFRLLSQ 398
Cdd:COG5048   192 VSTSIPSSSENSPLSSSYSIPSSSSDQNLENsSSSLPLTTNSQLSPKSLLSQSPSSLSSSD--SSSSASESPRSSLPTAS 269

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958648654 399 LTQHRSIHTGE-------KPHECKECGKTFRLYSFLSQHQR--IHTGE--RPYKCKE--CKKAFRQHSHLTQHQKIHSG 464
Cdd:COG5048   270 SQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTS 348
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
130-463 4.74e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 48.92  E-value: 4.74e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 130 KPYKCKECGQPFRQRAHLIRHHKLHTGEKPYECKD--CGKAFTVLQELTQHQRLHTGEKPYECK---------------- 191
Cdd:COG5048    32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYsgCDKSFSRPLELSRHLRTHHNNPSDLNSkslplsnskassssls 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 192 ECGKAFRVHQQLA--------RHQRIHTGEKPY-----SCKDCGK----------------TFRQCTHLTRHQRLHTSEK 242
Cdd:COG5048   112 SSSSNSNDNNLLSshslppssRDPQLPDLLSISnlrnnPLPGNNSssvntpqsnslhpplpANSLSKDPSSNLSLLISSN 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 243 L-------YECKECGKAFVYGPDLRVHQKTHFgekpYACKDCGKSFRICQQLTVHQSIHTGEKPYACKECRKTFRLRQQL 315
Cdd:COG5048   192 VstsipssSENSPLSSSYSIPSSSSDQNLENS----SSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPT 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 316 VRHQRvHTHKR-----------PYECLECWKTFSSYSQLISH--ESIHVGE--RPYGCEE--CGKAFRLLSQLTQHRSIH 378
Cdd:COG5048   268 ASSQS-SSPNEsdsssekgfslPIKSKQCNISFSRSSPLTRHlrSVNHSGEslKPFSCPYslCGKLFSRNDALKRHILLH 346

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 379 TGEKPYEC--QECRKPFRLLS-----QLTQHRSIHTGEKPHEC--KECGKTFRLYSFLSQHQRIHTGERPY--KCKECKK 447
Cdd:COG5048   347 TSISPAKEklLNSSSKFSPLLnneppQSLQQYKDLKNDKKSETlsNSCIRNFKRDSNLSLHIITHLSFRPYncKNPPCSK 426

                         410
                  ....*....|....*.
gi 1958648654 448 AFRQHSHLTQHQKIHS 463
Cdd:COG5048   427 SFNRHYNLIPHKKIHT 442
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
122-406 1.30e-05

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 47.38  E-value: 1.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 122 HLRIHTGEKPYKCKECGQPFRQRAHLIRHHKLHTGEKPYECKDCGkaFTVLQELTQHQRLHTGEK--PYECKECGKAFR- 198
Cdd:COG5048   189 SSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNS--QLSPKSLLSQSPSSLSSSdsSSSASESPRSSLp 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 199 -VHQQLARHQRIHTGE-----KPYSCKDCGKTFRQCTHLTRHQR--LHTSEKLYECKE----CGKAFVYGPDLRVHQKTH 266
Cdd:COG5048   267 tASSQSSSPNESDSSSekgfsLPIKSKQCNISFSRSSPLTRHLRsvNHSGESLKPFSCpyslCGKLFSRNDALKRHILLH 346

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 267 FGEKPYACKdcgksfricqqLTVHQSIHTGEKPYackecrktfrLRQQLVRHQRVHTHKRPYECL--ECWKTFSSYSQLI 344
Cdd:COG5048   347 TSISPAKEK-----------LLNSSSKFSPLLNN----------EPPQSLQQYKDLKNDKKSETLsnSCIRNFKRDSNLS 405

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958648654 345 SHESIHVGERPYGCE--ECGKAFRLLSQLTQHRSIHTGEKPYECQECRKPFRllSQLTQHRSIH 406
Cdd:COG5048   406 LHIITHLSFRPYNCKnpPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRR--DLDLSNHGKD 467
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 296-375 2.64e-05

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 46.25  E-value: 2.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 296 GEKPYACK--ECRKTFRlRQQLVRHQRVHTHKRPyeclecwKTFSSYSQlISHESIHVGERPYGCEECGKAFRLLSQLTQ 373
Cdd:COG5189   346 DGKPYKCPveGCNKKYK-NQNGLKYHMLHGHQNQ-------KLHENPSP-EKMNIFSAKDKPYRCEVCDKRYKNLNGLKY 416


                  ..
gi 1958648654 374 HR 375
Cdd:COG5189   417 HR 418
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
298-455 7.21e-04

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 41.99  E-value: 7.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 298 KPYACKECRKTFRLRQQLVRHQR--VHT--HKRPYECLE--CWKTFSSYSQLISHESIHVGERPYGC--EECGKAFRLLS 369
Cdd:COG5048   288 LPIKSKQCNISFSRSSPLTRHLRsvNHSgeSLKPFSCPYslCGKLFSRNDALKRHILLHTSISPAKEklLNSSSKFSPLL 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 370 -----QLTQHRSIHTGEKPYEC--QECRKPFRLLSQLTQHRSIHTGEKPHECK--ECGKTFRLYSFLSQHQRIHTGERPY 440
Cdd:COG5048   368 nneppQSLQQYKDLKNDKKSETlsNSCIRNFKRDSNLSLHIITHLSFRPYNCKnpPCSKSFNRHYNLIPHKKIHTNHAPL 447

                         170
                  ....*....|....*
gi 1958648654 441 KCkECKKAFRQHSHL 455
Cdd:COG5048   448 LC-SILKSFRRDLDL 461
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
102-234 1.30e-03

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 41.22  E-value: 1.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 102 KFYECKECRKTFIRRSTLSQHLR--IHTGE--KPYKCKE--CGQPFRQRAHLIRHHKLHTGEKPYECK--DCGKAFTVL- 172
Cdd:COG5048   288 LPIKSKQCNISFSRSSPLTRHLRsvNHSGEslKPFSCPYslCGKLFSRNDALKRHILLHTSISPAKEKllNSSSKFSPLl 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958648654 173 -QELTQHQRLHTGEKP-----------------------------------YECKECGKAFRVHQQLARHQRIHTGEKPY 216
Cdd:COG5048   368 nNEPPQSLQQYKDLKNdkksetlsnscirnfkrdsnlslhiithlsfrpynCKNPPCSKSFNRHYNLIPHKKIHTNHAPL 447

                         170
                  ....*....|....*...
gi 1958648654 217 SCKDCGKtFRQCTHLTRH 234
Cdd:COG5048   448 LCSILKS-FRRDLDLSNH 464
zf-H2C2_2 pfam13465
Zinc-finger double domain;
203-227 1.47e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.81  E-value: 1.47e-03
                          10        20
                  ....*....|....*....|....*
gi 1958648654 203 LARHQRIHTGEKPYSCKDCGKTFRQ 227
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
427-451 2.31e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.42  E-value: 2.31e-03
                          10        20
                  ....*....|....*....|....*
gi 1958648654 427 LSQHQRIHTGERPYKCKECKKAFRQ 451
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
zf-H2C2_2 pfam13465
Zinc-finger double domain;
174-197 2.73e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.04  E-value: 2.73e-03
                          10        20
                  ....*....|....*....|....
gi 1958648654 174 ELTQHQRLHTGEKPYECKECGKAF 197
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSF 24
zf-H2C2_2 pfam13465
Zinc-finger double domain;
146-170 5.66e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 34.27  E-value: 5.66e-03
                          10        20
                  ....*....|....*....|....*
gi 1958648654 146 HLIRHHKLHTGEKPYECKDCGKAFT 170
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 216-238 9.30e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 33.81  E-value: 9.30e-03
                          10        20
                  ....*....|....*....|...
gi 1958648654 216 YSCKDCGKTFRQCTHLTRHQRLH 238
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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