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Conserved domains on  [gi|1958663813|ref|XP_038943665|]
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zinc finger protein 385C isoform X1 [Rattus norvegicus]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 10648587)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0003676|GO:0008270
PubMed:  11179890|11361095|10940247|22803940|12665246
SCOP:  4003583

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 371-395 4.62e-06

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


:

Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 43.25  E-value: 4.62e-06
                          10        20
                  ....*....|....*....|....*
gi 1958663813 371 FHCALCQLHVNSETQLKQHMSSRRH 395
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 160-182 2.77e-05

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


:

Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 40.94  E-value: 2.77e-05
                          10        20
                  ....*....|....*....|...
gi 1958663813 160 CNICHLRFNSANQAEAHYKGHRH 182
Cdd:pfam12874   3 CELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 302-326 3.21e-05

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


:

Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 40.56  E-value: 3.21e-05
                          10        20
                  ....*....|....*....|....*
gi 1958663813 302 LYCPTCKVTVNSASQLQAHNTGAKH 326
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 45-74 1.79e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


:

Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 36.08  E-value: 1.79e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1958663813   45 CDVCNIQLNSAAQAQVHCGGRAHQRRLRQL 74
Cdd:smart00451   6 CKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 7-305 5.55e-03

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.54  E-value: 5.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958663813    7 PPPSGEKEPPTTAASECPPHSPESSKPKRERKRPSYTLCDvcniqlNSAAQAQVHCGGRAHQRRLRQLSLGKTSTGPAGP 86
Cdd:PHA03247  2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP------PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP 2775

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958663813   87 ASSAP-----------SPLLASLTLPTQPLQPPLDLKHLLAFHLNGTTPLSLFPNFSTMDPVQKAVISHTFGVPSPLkkk 155
Cdd:PHA03247  2776 AAGPPrrltrpavaslSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL--- 2852

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958663813  156 lfiscnichlrfNSANQAEAHYKGHRHARKLKAVEAAKSKQRPRNLttngtvastASPPASGSPgNPQSKDPASPPRGPS 235
Cdd:PHA03247  2853 ------------GGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRL---------ARPAVSRST-ESFALPPDQPERPPQ 2910

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958663813  236 LQLPPTPDPSTRDPAHSELSDAAASSSSSSCPPCSPDPSREAPGPEPAEVAAGNGVNGEGRGEKGRLYCP 305
Cdd:PHA03247  2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVP 2980
 
Name Accession Description Interval E-value
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 371-395 4.62e-06

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 43.25  E-value: 4.62e-06
                          10        20
                  ....*....|....*....|....*
gi 1958663813 371 FHCALCQLHVNSETQLKQHMSSRRH 395
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 160-182 2.77e-05

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 40.94  E-value: 2.77e-05
                          10        20
                  ....*....|....*....|...
gi 1958663813 160 CNICHLRFNSANQAEAHYKGHRH 182
Cdd:pfam12874   3 CELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 302-326 3.21e-05

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 40.56  E-value: 3.21e-05
                          10        20
                  ....*....|....*....|....*
gi 1958663813 302 LYCPTCKVTVNSASQLQAHNTGAKH 326
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 160-187 4.69e-04

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 37.62  E-value: 4.69e-04
                           10        20
                   ....*....|....*....|....*...
gi 1958663813  160 CNICHLRFNSANQAEAHYKGHRHARKLK 187
Cdd:smart00451   6 CKLCNVTFTDEISVEAHLKGKKHKKNVK 33
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 299-327 8.71e-04

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 36.85  E-value: 8.71e-04
                           10        20
                   ....*....|....*....|....*....
gi 1958663813  299 KGRLYCPTCKVTVNSASQLQAHNTGAKHR 327
Cdd:smart00451   1 TGGFYCKLCNVTFTDEISVEAHLKGKKHK 29
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 45-74 1.79e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 36.08  E-value: 1.79e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1958663813   45 CDVCNIQLNSAAQAQVHCGGRAHQRRLRQL 74
Cdd:smart00451   6 CKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 369-400 1.95e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 35.69  E-value: 1.95e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1958663813  369 PPFHCALCQLHVNSETQLKQHMSSRRHKDRLA 400
Cdd:smart00451   2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVK 33
PHA03247 PHA03247
large tegument protein UL36; Provisional
 7-305 5.55e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.54  E-value: 5.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958663813    7 PPPSGEKEPPTTAASECPPHSPESSKPKRERKRPSYTLCDvcniqlNSAAQAQVHCGGRAHQRRLRQLSLGKTSTGPAGP 86
Cdd:PHA03247  2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP------PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP 2775

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958663813   87 ASSAP-----------SPLLASLTLPTQPLQPPLDLKHLLAFHLNGTTPLSLFPNFSTMDPVQKAVISHTFGVPSPLkkk 155
Cdd:PHA03247  2776 AAGPPrrltrpavaslSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL--- 2852

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958663813  156 lfiscnichlrfNSANQAEAHYKGHRHARKLKAVEAAKSKQRPRNLttngtvastASPPASGSPgNPQSKDPASPPRGPS 235
Cdd:PHA03247  2853 ------------GGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRL---------ARPAVSRST-ESFALPPDQPERPPQ 2910

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958663813  236 LQLPPTPDPSTRDPAHSELSDAAASSSSSSCPPCSPDPSREAPGPEPAEVAAGNGVNGEGRGEKGRLYCP 305
Cdd:PHA03247  2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVP 2980
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 45-67 6.24e-03

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 34.39  E-value: 6.24e-03
                          10        20
                  ....*....|....*....|...
gi 1958663813  45 CDVCNIQLNSAAQAQVHCGGRAH 67
Cdd:pfam12874   3 CELCNVTFNSESQLKSHLQGKKH 25
 
Name Accession Description Interval E-value
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 371-395 4.62e-06

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 43.25  E-value: 4.62e-06
                          10        20
                  ....*....|....*....|....*
gi 1958663813 371 FHCALCQLHVNSETQLKQHMSSRRH 395
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 160-182 2.77e-05

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 40.94  E-value: 2.77e-05
                          10        20
                  ....*....|....*....|...
gi 1958663813 160 CNICHLRFNSANQAEAHYKGHRH 182
Cdd:pfam12874   3 CELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 302-326 3.21e-05

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 40.56  E-value: 3.21e-05
                          10        20
                  ....*....|....*....|....*
gi 1958663813 302 LYCPTCKVTVNSASQLQAHNTGAKH 326
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 370-396 3.63e-04

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 37.92  E-value: 3.63e-04
                          10        20
                  ....*....|....*....|....*..
gi 1958663813 370 PFHCALCQLHVNSETQLKQHMSSRRHK 396
Cdd:pfam12171   1 QFYCVLCDKYFKSENALQNHLKSKKHK 27
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 160-187 4.69e-04

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 37.62  E-value: 4.69e-04
                           10        20
                   ....*....|....*....|....*...
gi 1958663813  160 CNICHLRFNSANQAEAHYKGHRHARKLK 187
Cdd:smart00451   6 CKLCNVTFTDEISVEAHLKGKKHKKNVK 33
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 299-327 8.71e-04

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 36.85  E-value: 8.71e-04
                           10        20
                   ....*....|....*....|....*....
gi 1958663813  299 KGRLYCPTCKVTVNSASQLQAHNTGAKHR 327
Cdd:smart00451   1 TGGFYCKLCNVTFTDEISVEAHLKGKKHK 29
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 301-327 9.05e-04

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 36.76  E-value: 9.05e-04
                          10        20
                  ....*....|....*....|....*..
gi 1958663813 301 RLYCPTCKVTVNSASQLQAHNTGAKHR 327
Cdd:pfam12171   1 QFYCVLCDKYFKSENALQNHLKSKKHK 27
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 45-74 1.79e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 36.08  E-value: 1.79e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1958663813   45 CDVCNIQLNSAAQAQVHCGGRAHQRRLRQL 74
Cdd:smart00451   6 CKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 369-400 1.95e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 35.69  E-value: 1.95e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1958663813  369 PPFHCALCQLHVNSETQLKQHMSSRRHKDRLA 400
Cdd:smart00451   2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVK 33
PHA03247 PHA03247
large tegument protein UL36; Provisional
 7-305 5.55e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.54  E-value: 5.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958663813    7 PPPSGEKEPPTTAASECPPHSPESSKPKRERKRPSYTLCDvcniqlNSAAQAQVHCGGRAHQRRLRQLSLGKTSTGPAGP 86
Cdd:PHA03247  2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP------PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP 2775

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958663813   87 ASSAP-----------SPLLASLTLPTQPLQPPLDLKHLLAFHLNGTTPLSLFPNFSTMDPVQKAVISHTFGVPSPLkkk 155
Cdd:PHA03247  2776 AAGPPrrltrpavaslSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL--- 2852

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958663813  156 lfiscnichlrfNSANQAEAHYKGHRHARKLKAVEAAKSKQRPRNLttngtvastASPPASGSPgNPQSKDPASPPRGPS 235
Cdd:PHA03247  2853 ------------GGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRL---------ARPAVSRST-ESFALPPDQPERPPQ 2910

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958663813  236 LQLPPTPDPSTRDPAHSELSDAAASSSSSSCPPCSPDPSREAPGPEPAEVAAGNGVNGEGRGEKGRLYCP 305
Cdd:PHA03247  2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVP 2980
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 45-67 6.24e-03

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 34.39  E-value: 6.24e-03
                          10        20
                  ....*....|....*....|...
gi 1958663813  45 CDVCNIQLNSAAQAQVHCGGRAH 67
Cdd:pfam12874   3 CELCNVTFNSESQLKSHLQGKKH 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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