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Conserved domains on  [gi|1958669242|ref|XP_038945560|]
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piwi-like protein 1 isoform X1 [Rattus norvegicus]

Protein Classification

PAZ_piwi_like and Piwi_piwi-like_Euk domain-containing protein( domain architecture ID 12066143)

protein containing domains GAGE, ArgoL1, PAZ_piwi_like, and Piwi_piwi-like_Euk

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Piwi_piwi-like_Euk cd04658
Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found ...
 403-846 0e+00

Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.


:

Pssm-ID: 240016 [Multi-domain]  Cd Length: 448  Bit Score: 670.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 403 NVMKDLAVHTRLTPEQRQREVGRLIDYIHKDDNVQRELRDWGLSFDSNLLSFSGRILQSEKIHQGGKtFDYNPQFADWSK 482
Cdd:cd04658     1 NLMKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNV-FVYANSNADWKR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 483 ETRGAPLISVKPLDNWLLIYTRRNYEAANSLIQNLFKVTPAMGIQMKKAIMIEV-DDRTEAYLRALQQKVTSDTQIVVCL 561
Cdd:cd04658    80 EIRNQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVAGPMGIQISPPKIIKVkDDRIETYIRALKDAFRSDPQLVVII 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 562 LSSNRKDKYDAIKKYLCTDCPTPSQCVVARTLGKQQTVMAIATKIALQMNCKMGGELWRVDMP---LKLAMIVGIDCYHD 638
Cdd:cd04658   160 LPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIPpfiLKNTMIVGIDVYHD 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 639 TTAGRRSIAGFVASINEGMTRWFSRCVFQDRGQEL-VDGLKVCLQAALRAWSGCNEYMPSRVIVYRDGVGDGQLKTLVNY 717
Cdd:cd04658   240 TITKKKSVVGFVASLNKSITKWFSKYISQVRGQEEiIDSLGKSMKKALKAYKKENKKLPSRIIIYRDGVGDGQLKKVKEY 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 718 EVPQFLDCLKSVGRGYNPRLTVIVVKKRVNARFFAQSGGRLQNPLPGTVIDVEVTRPEWYDFFIVSQAVRSGSVSPTHYN 797
Cdd:cd04658   320 EVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGNNFSNPPPGTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYN 399

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*....
gi 1958669242 798 VIYDSSGLKPDHIQRLTYKLCHVYYNWPGVIRVPAPCQYAHKLAFLVGQ 846
Cdd:cd04658   400 VLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAHKLAFLVGQ 448
PAZ smart00949
This domain is named PAZ after the proteins Piwi Argonaut and Zwille; This domain is found in ...
 279-417 3.55e-65

This domain is named PAZ after the proteins Piwi Argonaut and Zwille; This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel factory protein. The function of the domains is unknown but has been suggested to mediate complex formation between proteins of the Piwi and Dicer families by hetero-dimerisation. The three-dimensional structure of this domain has been solved. The PAZ domain is composed of two subdomains. One subdomain is similar to the OB fold, albeit with a different topology. The OB-fold is well known as a single-stranded nucleic acid binding fold. The second subdomain is composed of a beta-hairpin followed by an alpha-helix. The PAZ domains shows low-affinity nucleic acid binding and appears to interact with the 3' ends of single-stranded regions of RNA in the cleft between the two subdomains. PAZ can bind the characteristic two-base 3' overhangs of siRNAs, indicating that although PAZ may not be a primary nucleic acid binding site in Dicer or RISC, it may contribute to the specific and productive incorporation of siRNAs and miRNAs into the RNAi pathway.


:

Pssm-ID: 198017  Cd Length: 138  Bit Score: 214.07  E-value: 3.55e-65
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242  279 ETVLDFMFNLYQQTEEHKFQEQVSKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITD 358
Cdd:smart00949   1 ETVLDFMRQLPSQGNRSNFQDRCAKDLKGLIVLTRYNNKTYRIDDIDWNLAPKSTFEKSDGSEITFVEYYKQKYNITIRD 80

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958669242  359 LKQPVLVSQPKRRRGPGGTlPGPAMLIPELCYLTGLTDKMRNDFNVMKDLAVHTRLTPE 417
Cdd:smart00949  81 PNQPLLVSRPKRRRNQNGK-GEPVLLPPELCFITGLTDRMRKDFMLMKSIADRTRLSPL 138
GAGE pfam05831
GAGE protein; This family consists of several GAGE and XAGE proteins which are found ...
 16-108 6.76e-25

GAGE protein; This family consists of several GAGE and XAGE proteins which are found exclusively in humans. The function of this family is unknown although they have been implicated in human cancers.


:

Pssm-ID: 461753  Cd Length: 107  Bit Score: 99.76  E-value: 6.76e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242  16 QETVQHVGAAAqSQQPGYIPPRPQQSPTEGDLVGRGRQRGmvVGATSKSQELQISAGFQELSLAERGGRRRDFHDLGVNT 95
Cdd:pfam05831  18 QESSQLVGPVV-AQQPSDEQPQQEEPPTESQDITPGQERE--DEGASAIQGPELEADLQELALEKTGGERGDGPDVKGKT 94

                          90
                  ....*....|...
gi 1958669242  96 RQNLDHVKESKTG 108
Cdd:pfam05831  95 LPNLEPVKMPEAG 107
ArgoL1 pfam08699
Argonaute linker 1 domain; ArgoL1 is a region found in argonaute proteins. It normally ...
 230-277 1.54e-03

Argonaute linker 1 domain; ArgoL1 is a region found in argonaute proteins. It normally co-occurs with pfam02179 and pfam02171. It is a linker region between the N-terminal and the PAZ domains. It contains an alpha-helix packed against a three-stranded antiparallel beta-sheet with two long beta-strands (beta8 and beta9) of the sheet spanning one face of the adjacent N and PAZ domains. L1 together with linker 2, L2, PAZ and ArgoN forms a compact global fold.


:

Pssm-ID: 462567  Cd Length: 52  Bit Score: 37.12  E-value: 1.54e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1958669242 230 IGRNYY--NPSDPIDIPNHRLVIWPGFTTSILQYENNIMLCTDVSHKVLR 277
Cdd:pfam08699   2 VGRSFFspPGENRVDLGGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFY 51
 
Name Accession Description Interval E-value
Piwi_piwi-like_Euk cd04658
Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found ...
 403-846 0e+00

Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.


Pssm-ID: 240016 [Multi-domain]  Cd Length: 448  Bit Score: 670.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 403 NVMKDLAVHTRLTPEQRQREVGRLIDYIHKDDNVQRELRDWGLSFDSNLLSFSGRILQSEKIHQGGKtFDYNPQFADWSK 482
Cdd:cd04658     1 NLMKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNV-FVYANSNADWKR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 483 ETRGAPLISVKPLDNWLLIYTRRNYEAANSLIQNLFKVTPAMGIQMKKAIMIEV-DDRTEAYLRALQQKVTSDTQIVVCL 561
Cdd:cd04658    80 EIRNQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVAGPMGIQISPPKIIKVkDDRIETYIRALKDAFRSDPQLVVII 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 562 LSSNRKDKYDAIKKYLCTDCPTPSQCVVARTLGKQQTVMAIATKIALQMNCKMGGELWRVDMP---LKLAMIVGIDCYHD 638
Cdd:cd04658   160 LPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIPpfiLKNTMIVGIDVYHD 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 639 TTAGRRSIAGFVASINEGMTRWFSRCVFQDRGQEL-VDGLKVCLQAALRAWSGCNEYMPSRVIVYRDGVGDGQLKTLVNY 717
Cdd:cd04658   240 TITKKKSVVGFVASLNKSITKWFSKYISQVRGQEEiIDSLGKSMKKALKAYKKENKKLPSRIIIYRDGVGDGQLKKVKEY 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 718 EVPQFLDCLKSVGRGYNPRLTVIVVKKRVNARFFAQSGGRLQNPLPGTVIDVEVTRPEWYDFFIVSQAVRSGSVSPTHYN 797
Cdd:cd04658   320 EVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGNNFSNPPPGTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYN 399

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*....
gi 1958669242 798 VIYDSSGLKPDHIQRLTYKLCHVYYNWPGVIRVPAPCQYAHKLAFLVGQ 846
Cdd:cd04658   400 VLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAHKLAFLVGQ 448
Piwi pfam02171
Piwi domain; This domain is found in the protein Piwi and its relatives. The function of this ...
 557-849 6.87e-129

Piwi domain; This domain is found in the protein Piwi and its relatives. The function of this domain is the dsRNA guided hydrolysis of ssRNA. Determination of the crystal structure of Argonaute reveals that PIWI is an RNase H domain, and identifies Argonaute as Slicer, the enzyme that cleaves mRNA in the RNAi RISC complex. In addition, Mg+2 dependence and production of 3'-OH and 5' phosphate products are shared characteriztics of RNaseH and RISC. The PIWI domain core has a tertiary structure belonging to the RNase H family of enzymes. RNase H fold proteins all have a five-stranded mixed beta-sheet surrounded by helices. By analogy to RNase H enzymes which cleave single-stranded RNA guided by the DNA strand in an RNA/DNA hybrid, the PIWI domain can be inferred to cleave single-stranded RNA, for example mRNA, guided by double stranded siRNA.


Pssm-ID: 396649  Cd Length: 296  Bit Score: 388.24  E-value: 6.87e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 557 IVVCLLSSNRKDKYDAIKKYLCTDCPTPSQCVVARTLGKQQTvMAIATKIALQMNCKMGGE-LWRVDMPLKLAMIVGIDC 635
Cdd:pfam02171   1 LILVILPEKNKDLYHSIKKYLETDLGIPSQCILSKTILKRTL-KQTLTNVLLKINVKLGGInYWIVEIKPKVDVIIGFDI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 636 YHDT--TAGRRSIAGFVASINEGMTRWFSRCVFQDRGQELVDGLKVCLQAALRAWSGCNEYMPSRVIVYRDGVGDGQLKT 713
Cdd:pfam02171  80 SHGTagTDDNPSVAAVVASFDKGNSRYFGTVRTQASGQELLEPLKDIIKELLRSFQKSSRKKPERIIVYRDGVSEGQFPQ 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 714 LVNYEVPQFLDCLKSVGRGYNPRLTVIVVKKRVNARFFAQSG-GRLQNPLPGTVIDVEVTRPEWYDFFIVSQAVRSGSVS 792
Cdd:pfam02171 160 VLNYEVNQIKEACKSLGPGYNPKLTVIVVQKRHHTRFFANDKpDGDQNPPPGTVVDDVITLPEYYDFYLCSHAGLQGTVK 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1958669242 793 PTHYNVIYDSSGLKPDHIQRLTYKLCHVYYNWPGVIRVPAPCQYAHKLAFLVGQSIH 849
Cdd:pfam02171 240 PTHYTVLYDEIGLSADELQNLTYKLCHMYYRSTRPISIPAPVYYAHLLAKRVRNNIK 296
Piwi smart00950
This domain is found in the protein Piwi and its relatives; The function of this domain is the ...
 557-849 5.91e-124

This domain is found in the protein Piwi and its relatives; The function of this domain is the dsRNA guided hydrolysis of ssRNA. Determination of the crystal structure of Argonaute reveals that PIWI is an RNase H domain, and identifies Argonaute as Slicer, the enzyme that cleaves mRNA in the RNAi RISC complex.. In addition, Mg+2 dependence and production of 3'-OH and 5' phosphate products are shared characteristics of RNaseH and RISC. The PIWI domain core has a tertiary structure belonging to the RNase H family of enzymes. RNase H fold proteins all have a five-stranded mixed beta-sheet surrounded by helices. By analogy to RNase H enzymes which cleave single-stranded RNA guided by the DNA strand in an RNA/DNA hybrid, the PIWI domain can be inferred to cleave single-stranded RNA, for example mRNA, guided by double stranded siRNA.


Pssm-ID: 214930  Cd Length: 301  Bit Score: 375.52  E-value: 5.91e-124
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242  557 IVVCLLSSNRKDKYDAIKKYLCTDCPTPSQCVVARTL---GKQQTVMAIATKIALQMNCKMGGELWRVD---MPLKLAMI 630
Cdd:smart00950   2 IVVILPGEKKTDLYHEIKKYLETKLGVPTQCVQAKTLdkvSKRRKLKQYLTNVALKINAKLGGINWVLDvppIPLKPTLI 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242  631 VGIDCYHDTTAGRRSIAGFVASINeGMTRWFSRCVFQD-RGQELVDGLKVCLQAALRAWSG-CNEYMPSRVIVYRDGVGD 708
Cdd:smart00950  82 IGIDVSHPSAGKGGSVAPSVAAFV-ASGNYLSGNFYQAfVREQGSRQLKEILREALKKYYKsNRKRLPDRIVVYRDGVSE 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242  709 GQLKTLVNYEVPQFLDCLKSVGRGYNPRLTVIVVKKRVNARFFAQSGGRLQNPLPGTVIDVEVTRPEWYDFFIVSQAVRS 788
Cdd:smart00950 161 GQFKQVLEYEVKAIKKACKELGPDYKPKLTVIVVQKRHHTRFFPEDGNGRVNVPPGTVVDSVITSPEWYDFYLVSHAGLQ 240

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958669242  789 GSVSPTHYNVIYDSSGLKPDHIQRLTYKLCHVYYNWPGVIRVPAPCQYAHKLAFLVGQSIH 849
Cdd:smart00950 241 GTARPTHYTVLYDEGNLDPDELQRLTYKLCHLYYRSTRPVSLPAPVYYAHLLAKRARQLLH 301
PAZ smart00949
This domain is named PAZ after the proteins Piwi Argonaut and Zwille; This domain is found in ...
 279-417 3.55e-65

This domain is named PAZ after the proteins Piwi Argonaut and Zwille; This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel factory protein. The function of the domains is unknown but has been suggested to mediate complex formation between proteins of the Piwi and Dicer families by hetero-dimerisation. The three-dimensional structure of this domain has been solved. The PAZ domain is composed of two subdomains. One subdomain is similar to the OB fold, albeit with a different topology. The OB-fold is well known as a single-stranded nucleic acid binding fold. The second subdomain is composed of a beta-hairpin followed by an alpha-helix. The PAZ domains shows low-affinity nucleic acid binding and appears to interact with the 3' ends of single-stranded regions of RNA in the cleft between the two subdomains. PAZ can bind the characteristic two-base 3' overhangs of siRNAs, indicating that although PAZ may not be a primary nucleic acid binding site in Dicer or RISC, it may contribute to the specific and productive incorporation of siRNAs and miRNAs into the RNAi pathway.


Pssm-ID: 198017  Cd Length: 138  Bit Score: 214.07  E-value: 3.55e-65
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242  279 ETVLDFMFNLYQQTEEHKFQEQVSKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITD 358
Cdd:smart00949   1 ETVLDFMRQLPSQGNRSNFQDRCAKDLKGLIVLTRYNNKTYRIDDIDWNLAPKSTFEKSDGSEITFVEYYKQKYNITIRD 80

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958669242  359 LKQPVLVSQPKRRRGPGGTlPGPAMLIPELCYLTGLTDKMRNDFNVMKDLAVHTRLTPE 417
Cdd:smart00949  81 PNQPLLVSRPKRRRNQNGK-GEPVLLPPELCFITGLTDRMRKDFMLMKSIADRTRLSPL 138
PAZ_piwi_like cd02845
PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be ...
 278-395 2.81e-64

PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.


Pssm-ID: 239211  Cd Length: 117  Bit Score: 210.96  E-value: 2.81e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 278 SETVLDFMFNLYQQTEEHKFQEQVSKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEIT 357
Cdd:cd02845     1 STTVLDRMHKLYRQETDERFREECEKELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSDGTEITFVEYYKKQYNIEIT 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1958669242 358 DLKQPVLVSQPKRRRGPGGTlPGPAMLIPELCYLTGLT 395
Cdd:cd02845    81 DLNQPLLVSRPKRRDPRGGE-KEPIYLIPELCFLTGLT 117
PAZ pfam02170
PAZ domain; This domain is named PAZ after the proteins Piwi Argonaut and Zwille. This domain ...
 282-415 2.11e-45

PAZ domain; This domain is named PAZ after the proteins Piwi Argonaut and Zwille. This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel factory protein. The function of the domains is unknown but has been suggested to mediate complex formation between proteins of the Piwi and Dicer families by hetero-dimerization. The three-dimensional structure of this domain has been solved. The PAZ domain is composed of two subdomains. One subdomain is similar to the OB fold, albeit with a different topology. The OB-fold is well known as a single-stranded nucleic acid binding fold. The second subdomain is composed of a beta-hairpin followed by an alpha-helix. The PAZ domains shows low-affinity nucleic acid binding and appears to interact with the 3' ends of single-stranded regions of RNA in the cleft between the two subdomains. PAZ can bind the characteriztic two-base 3' overhangs of siRNAs, indicating that although PAZ may not be a primary nucleic acid binding site in Dicer or RISC, it may contribute to the specific and productive incorporation of siRNAs and miRNAs into the RNAi pathway.


Pssm-ID: 460472  Cd Length: 123  Bit Score: 158.90  E-value: 2.11e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 282 LDFMFNLYQQTEEHKFQEQVSKELIGLIVLTKYNN-KTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLK 360
Cdd:pfam02170   1 LDFLKRLQQQKDRRDFRKEAKKALKGLKVYTTYNNpRTYRIDGITFDPTPESTFPLKDGKEITVVDYFKKKYNIDLKYPD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1958669242 361 QPVLVSQPKRRRgpggtlpgpAMLIPELCYltgLTDKMRNDFNVMKDLAVHTRLT 415
Cdd:pfam02170  81 QPLLLVGKKRPK---------VYLPPELCN---LVDGQRYTKKLMPSIAQRTRLL 123
PLN03202 PLN03202
protein argonaute; Provisional
 253-851 1.04e-42

protein argonaute; Provisional


Pssm-ID: 215631 [Multi-domain]  Cd Length: 900  Bit Score: 167.97  E-value: 1.04e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 253 GFTTSILQYENNIMLCTDVSHK-VLRSETVLDFMfnLYQQTEEHKFQ---EQVSKELIGLIVLTKYNNKTYRVddIDWDQ 328
Cdd:PLN03202  241 GFHSSFRTTQGGLSLNIDVSTTmIVQPGPVVDFL--IANQNVRDPFQidwSKAKRMLKNLRVKVSPSNQEYKI--TGLSE 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 329 NP--KSTF--KKADGS-------EVSFLEYYRKQYNQEIT---DLkqPVL-VSQPKRrrgpggtlpgPAMLIPELCYLTG 393
Cdd:PLN03202  317 KPckEQTFslKQRNGNgnevetvEITVYDYFVKHRGIELRysgDL--PCInVGKPKR----------PTYFPIELCSLVS 384

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 394 LTdkmrndfNVMKDLAVHTRLT--------PEQRQREVGR-LIDYIHKDDNVqreLRDWGLSFDSNLLSFSGRILQSEKI 464
Cdd:PLN03202  385 LQ-------RYTKALSTLQRSSlveksrqkPQERMKVLTDaLKSSNYDADPM---LRSCGISISSQFTQVEGRVLPAPKL 454

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 465 hQGGKTFDYNPQFADWSKETRgaPLISVKPLDNWLLIytrrNYEA---ANSLIQNLFKVTPAMGIQMKKAI-MIEVDD-- 538
Cdd:PLN03202  455 -KVGNGEDFFPRNGRWNFNNK--KLVEPTKIERWAVV----NFSArcdIRHLVRDLIKCGEMKGINIEPPFdVFEENPqf 527

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 539 -------RTEAYLRALQQKVTSDTQIVVCLLSsNRK--DKYDAIKKYLCTDCPTPSQCVVARTLGKQQTvmaiaTKIALQ 609
Cdd:PLN03202  528 rrapppvRVEKMFEQIQSKLPGPPQFLLCILP-ERKnsDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYL-----TNVLLK 601

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 610 MNCKMGG--ELWRVD----MPL--KL-AMIVGIDCYHDT--TAGRRSIAGFVASINEGMTRWFSRCV-FQDRGQELVDGL 677
Cdd:PLN03202  602 INAKLGGlnSLLAIEhspsIPLvsKVpTIILGMDVSHGSpgQSDVPSIAAVVSSRQWPLISRYRASVrTQSPKVEMIDSL 681

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 678 ----------KVCLQAALRAWSGCNEYMPSRVIVYRDGVGDGQLKTLVNYEVPQFLDCLKSVGRGYNPRLTVIVVKKRVN 747
Cdd:PLN03202  682 fkpvgdkdddGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHH 761

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 748 ARFFaQSGGRlQNPLPGTVIDVEVTRPEWYDFFIVSQAVRSGSVSPTHYNVIYDSSGLKPDHIQRLTYKLCHVYYNWPGV 827
Cdd:PLN03202  762 TKFF-QAGSP-DNVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTA 839

                         650       660
                  ....*....|....*....|....
gi 1958669242 828 IRVPAPCQYAHKLAFLVGQSIHRE 851
Cdd:PLN03202  840 ISVVAPVCYAHLAAAQMGQFMKFE 863
GAGE pfam05831
GAGE protein; This family consists of several GAGE and XAGE proteins which are found ...
 16-108 6.76e-25

GAGE protein; This family consists of several GAGE and XAGE proteins which are found exclusively in humans. The function of this family is unknown although they have been implicated in human cancers.


Pssm-ID: 461753  Cd Length: 107  Bit Score: 99.76  E-value: 6.76e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242  16 QETVQHVGAAAqSQQPGYIPPRPQQSPTEGDLVGRGRQRGmvVGATSKSQELQISAGFQELSLAERGGRRRDFHDLGVNT 95
Cdd:pfam05831  18 QESSQLVGPVV-AQQPSDEQPQQEEPPTESQDITPGQERE--DEGASAIQGPELEADLQELALEKTGGERGDGPDVKGKT 94

                          90
                  ....*....|...
gi 1958669242  96 RQNLDHVKESKTG 108
Cdd:pfam05831  95 LPNLEPVKMPEAG 107
ArgoL1 pfam08699
Argonaute linker 1 domain; ArgoL1 is a region found in argonaute proteins. It normally ...
 230-277 1.54e-03

Argonaute linker 1 domain; ArgoL1 is a region found in argonaute proteins. It normally co-occurs with pfam02179 and pfam02171. It is a linker region between the N-terminal and the PAZ domains. It contains an alpha-helix packed against a three-stranded antiparallel beta-sheet with two long beta-strands (beta8 and beta9) of the sheet spanning one face of the adjacent N and PAZ domains. L1 together with linker 2, L2, PAZ and ArgoN forms a compact global fold.


Pssm-ID: 462567  Cd Length: 52  Bit Score: 37.12  E-value: 1.54e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1958669242 230 IGRNYY--NPSDPIDIPNHRLVIWPGFTTSILQYENNIMLCTDVSHKVLR 277
Cdd:pfam08699   2 VGRSFFspPGENRVDLGGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFY 51
 
Name Accession Description Interval E-value
Piwi_piwi-like_Euk cd04658
Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found ...
 403-846 0e+00

Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.


Pssm-ID: 240016 [Multi-domain]  Cd Length: 448  Bit Score: 670.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 403 NVMKDLAVHTRLTPEQRQREVGRLIDYIHKDDNVQRELRDWGLSFDSNLLSFSGRILQSEKIHQGGKtFDYNPQFADWSK 482
Cdd:cd04658     1 NLMKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNV-FVYANSNADWKR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 483 ETRGAPLISVKPLDNWLLIYTRRNYEAANSLIQNLFKVTPAMGIQMKKAIMIEV-DDRTEAYLRALQQKVTSDTQIVVCL 561
Cdd:cd04658    80 EIRNQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVAGPMGIQISPPKIIKVkDDRIETYIRALKDAFRSDPQLVVII 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 562 LSSNRKDKYDAIKKYLCTDCPTPSQCVVARTLGKQQTVMAIATKIALQMNCKMGGELWRVDMP---LKLAMIVGIDCYHD 638
Cdd:cd04658   160 LPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIPpfiLKNTMIVGIDVYHD 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 639 TTAGRRSIAGFVASINEGMTRWFSRCVFQDRGQEL-VDGLKVCLQAALRAWSGCNEYMPSRVIVYRDGVGDGQLKTLVNY 717
Cdd:cd04658   240 TITKKKSVVGFVASLNKSITKWFSKYISQVRGQEEiIDSLGKSMKKALKAYKKENKKLPSRIIIYRDGVGDGQLKKVKEY 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 718 EVPQFLDCLKSVGRGYNPRLTVIVVKKRVNARFFAQSGGRLQNPLPGTVIDVEVTRPEWYDFFIVSQAVRSGSVSPTHYN 797
Cdd:cd04658   320 EVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGNNFSNPPPGTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYN 399

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*....
gi 1958669242 798 VIYDSSGLKPDHIQRLTYKLCHVYYNWPGVIRVPAPCQYAHKLAFLVGQ 846
Cdd:cd04658   400 VLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAHKLAFLVGQ 448
Piwi pfam02171
Piwi domain; This domain is found in the protein Piwi and its relatives. The function of this ...
 557-849 6.87e-129

Piwi domain; This domain is found in the protein Piwi and its relatives. The function of this domain is the dsRNA guided hydrolysis of ssRNA. Determination of the crystal structure of Argonaute reveals that PIWI is an RNase H domain, and identifies Argonaute as Slicer, the enzyme that cleaves mRNA in the RNAi RISC complex. In addition, Mg+2 dependence and production of 3'-OH and 5' phosphate products are shared characteriztics of RNaseH and RISC. The PIWI domain core has a tertiary structure belonging to the RNase H family of enzymes. RNase H fold proteins all have a five-stranded mixed beta-sheet surrounded by helices. By analogy to RNase H enzymes which cleave single-stranded RNA guided by the DNA strand in an RNA/DNA hybrid, the PIWI domain can be inferred to cleave single-stranded RNA, for example mRNA, guided by double stranded siRNA.


Pssm-ID: 396649  Cd Length: 296  Bit Score: 388.24  E-value: 6.87e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 557 IVVCLLSSNRKDKYDAIKKYLCTDCPTPSQCVVARTLGKQQTvMAIATKIALQMNCKMGGE-LWRVDMPLKLAMIVGIDC 635
Cdd:pfam02171   1 LILVILPEKNKDLYHSIKKYLETDLGIPSQCILSKTILKRTL-KQTLTNVLLKINVKLGGInYWIVEIKPKVDVIIGFDI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 636 YHDT--TAGRRSIAGFVASINEGMTRWFSRCVFQDRGQELVDGLKVCLQAALRAWSGCNEYMPSRVIVYRDGVGDGQLKT 713
Cdd:pfam02171  80 SHGTagTDDNPSVAAVVASFDKGNSRYFGTVRTQASGQELLEPLKDIIKELLRSFQKSSRKKPERIIVYRDGVSEGQFPQ 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 714 LVNYEVPQFLDCLKSVGRGYNPRLTVIVVKKRVNARFFAQSG-GRLQNPLPGTVIDVEVTRPEWYDFFIVSQAVRSGSVS 792
Cdd:pfam02171 160 VLNYEVNQIKEACKSLGPGYNPKLTVIVVQKRHHTRFFANDKpDGDQNPPPGTVVDDVITLPEYYDFYLCSHAGLQGTVK 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1958669242 793 PTHYNVIYDSSGLKPDHIQRLTYKLCHVYYNWPGVIRVPAPCQYAHKLAFLVGQSIH 849
Cdd:pfam02171 240 PTHYTVLYDEIGLSADELQNLTYKLCHMYYRSTRPISIPAPVYYAHLLAKRVRNNIK 296
Piwi smart00950
This domain is found in the protein Piwi and its relatives; The function of this domain is the ...
 557-849 5.91e-124

This domain is found in the protein Piwi and its relatives; The function of this domain is the dsRNA guided hydrolysis of ssRNA. Determination of the crystal structure of Argonaute reveals that PIWI is an RNase H domain, and identifies Argonaute as Slicer, the enzyme that cleaves mRNA in the RNAi RISC complex.. In addition, Mg+2 dependence and production of 3'-OH and 5' phosphate products are shared characteristics of RNaseH and RISC. The PIWI domain core has a tertiary structure belonging to the RNase H family of enzymes. RNase H fold proteins all have a five-stranded mixed beta-sheet surrounded by helices. By analogy to RNase H enzymes which cleave single-stranded RNA guided by the DNA strand in an RNA/DNA hybrid, the PIWI domain can be inferred to cleave single-stranded RNA, for example mRNA, guided by double stranded siRNA.


Pssm-ID: 214930  Cd Length: 301  Bit Score: 375.52  E-value: 5.91e-124
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242  557 IVVCLLSSNRKDKYDAIKKYLCTDCPTPSQCVVARTL---GKQQTVMAIATKIALQMNCKMGGELWRVD---MPLKLAMI 630
Cdd:smart00950   2 IVVILPGEKKTDLYHEIKKYLETKLGVPTQCVQAKTLdkvSKRRKLKQYLTNVALKINAKLGGINWVLDvppIPLKPTLI 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242  631 VGIDCYHDTTAGRRSIAGFVASINeGMTRWFSRCVFQD-RGQELVDGLKVCLQAALRAWSG-CNEYMPSRVIVYRDGVGD 708
Cdd:smart00950  82 IGIDVSHPSAGKGGSVAPSVAAFV-ASGNYLSGNFYQAfVREQGSRQLKEILREALKKYYKsNRKRLPDRIVVYRDGVSE 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242  709 GQLKTLVNYEVPQFLDCLKSVGRGYNPRLTVIVVKKRVNARFFAQSGGRLQNPLPGTVIDVEVTRPEWYDFFIVSQAVRS 788
Cdd:smart00950 161 GQFKQVLEYEVKAIKKACKELGPDYKPKLTVIVVQKRHHTRFFPEDGNGRVNVPPGTVVDSVITSPEWYDFYLVSHAGLQ 240

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958669242  789 GSVSPTHYNVIYDSSGLKPDHIQRLTYKLCHVYYNWPGVIRVPAPCQYAHKLAFLVGQSIH 849
Cdd:smart00950 241 GTARPTHYTVLYDEGNLDPDELQRLTYKLCHLYYRSTRPVSLPAPVYYAHLLAKRARQLLH 301
Piwi_ago-like cd04657
Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of ...
 440-842 2.96e-78

Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.


Pssm-ID: 240015 [Multi-domain]  Cd Length: 426  Bit Score: 259.85  E-value: 2.96e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 440 LRDWGLSFDSNLLSFSGRILQSEKIHQGGKTFDYNPQFADWskETRGAPLISVKPLDNWLLIY---TRRNYEAANSL--- 513
Cdd:cd04657     3 LKEFGISVSKEMITVPGRVLPPPKLKYGDSSKTVPPRNGSW--NLRGKKFLEGGPIRSWAVLNfagPRRSREERADLrnf 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 514 IQNLFKVTPAMGIQMKkAIMIEVDDRTEAYLRALQQKVTSDTQIVVCLLSSNRKDKYDAIKKylCTDCPT--PSQCVVAR 591
Cdd:cd04657    81 VDQLVKTVIGAGINIT-TAIASVEGRVEELFAKLKQAKGEGPQLVLVILPKKDSDIYGRIKR--LADTELgiHTQCVLAK 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 592 TLGKQQTvMAIATKIALQMNCKMGGELWRVD------MPLKLAMIVGIDCYH---DTTAGRRSIAGFVASINEGMTRWFS 662
Cdd:cd04657   158 KVTKKGN-PQYFANVALKINLKLGGINHSLEpdirplLTKEPTMVLGADVTHpspGDPAGAPSIAAVVASVDWHLAQYPA 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 663 RCVFQDRGQELVDGLKVCLQAALRAWSGCNEYMPSRVIVYRDGVGDGQLKTLVNYEVPQFLDCLKSVGRGYNPRLTVIVV 742
Cdd:cd04657   237 SVRLQSHRQEIIDDLESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLNEELPAIRKACAKLYPGYKPKITFIVV 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 743 KKRVNARFFAQSG----GRLQNPLPGTVIDVEVTRPEWYDFFIVSQAVRSGSVSPTHYNVIYDSSGLKPDHIQRLTYKLC 818
Cdd:cd04657   317 QKRHHTRFFPTDEddadGKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYHVLWDEIGFTADELQTLTYNLC 396

                         410       420       430
                  ....*....|....*....|....*....|
gi 1958669242 819 HVYynwpgvIR------VPAPCQYAHKLAF 842
Cdd:cd04657   397 YTY------ARctrsvsIPPPAYYAHLAAA 420
Piwi-like cd02826
Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing ...
 452-843 1.81e-74

Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.


Pssm-ID: 239208 [Multi-domain]  Cd Length: 393  Bit Score: 248.84  E-value: 1.81e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 452 LSFSGRILQSEKIhqGGKTFDYNPQFADWSKETRGaplisvkplDNWLLIYTRrnYEAANSLIQNL--FKVTPAMGIQMK 529
Cdd:cd02826     3 LILKGRVLPKPQI--LFKNKFLRNIGPFEKPAKIT---------NPVAVIAFR--NEEVDDLVKRLadACRQLGMKIKEI 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 530 --KAIMIEVDDRTEAYLRALQQKVTSDTQIVVCLLSSNRKDKYDAIKKYLCTDcPTPSQCVVARTLGKQQTVMAIATKIA 607
Cdd:cd02826    70 piVSWIEDLNNSFKDLKSVFKNAIKAGVQLVIFILKEKKPPLHDEIKRLEAKS-DIPSQVIQLKTAKKMRRLKQTLDNLL 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 608 LQMNCKMGGELWRVDMPLKL---AMIVGIDCYH---DTTAGRRSIAGFVASINEGM---TRWFSRCVFQDRGQELVDGLK 678
Cdd:cd02826   149 RKVNSKLGGINYILDSPVKLfksDIFIGFDVSHpdrRTVNGGPSAVGFAANLSNHTflgGFLYVQPSREVKLQDLGEVIK 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 679 VCLQAALRAwsgCNEYMPSRVIVYRDGVGDGQLKtLVNYEVPQFLDCLKSVGRGYNPRLTVIVVKKRVNARFFA-QSGGR 757
Cdd:cd02826   229 KCLDGFKKS---TGEGLPEKIVIYRDGVSEGEFK-RVKEEVEEIIKEACEIEESYRPKLVIIVVQKRHNTRFFPnEKNGG 304

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 758 LQNPLPGTVIDVEVTRPEWYDFFIVSQAVRSGSVSPTHYNVIYDSSGLKPDHIQRLTYKLCHVYYNWPGVIRVPAPCQYA 837
Cdd:cd02826   305 VQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDKNWSLNELEILTYILCLTHQNVYSPISLPAPLYYA 384


                  ....*.
gi 1958669242 838 HKLAFL 843
Cdd:cd02826   385 HKLAKR 390
PAZ smart00949
This domain is named PAZ after the proteins Piwi Argonaut and Zwille; This domain is found in ...
 279-417 3.55e-65

This domain is named PAZ after the proteins Piwi Argonaut and Zwille; This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel factory protein. The function of the domains is unknown but has been suggested to mediate complex formation between proteins of the Piwi and Dicer families by hetero-dimerisation. The three-dimensional structure of this domain has been solved. The PAZ domain is composed of two subdomains. One subdomain is similar to the OB fold, albeit with a different topology. The OB-fold is well known as a single-stranded nucleic acid binding fold. The second subdomain is composed of a beta-hairpin followed by an alpha-helix. The PAZ domains shows low-affinity nucleic acid binding and appears to interact with the 3' ends of single-stranded regions of RNA in the cleft between the two subdomains. PAZ can bind the characteristic two-base 3' overhangs of siRNAs, indicating that although PAZ may not be a primary nucleic acid binding site in Dicer or RISC, it may contribute to the specific and productive incorporation of siRNAs and miRNAs into the RNAi pathway.


Pssm-ID: 198017  Cd Length: 138  Bit Score: 214.07  E-value: 3.55e-65
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242  279 ETVLDFMFNLYQQTEEHKFQEQVSKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITD 358
Cdd:smart00949   1 ETVLDFMRQLPSQGNRSNFQDRCAKDLKGLIVLTRYNNKTYRIDDIDWNLAPKSTFEKSDGSEITFVEYYKQKYNITIRD 80

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958669242  359 LKQPVLVSQPKRRRGPGGTlPGPAMLIPELCYLTGLTDKMRNDFNVMKDLAVHTRLTPE 417
Cdd:smart00949  81 PNQPLLVSRPKRRRNQNGK-GEPVLLPPELCFITGLTDRMRKDFMLMKSIADRTRLSPL 138
PAZ_piwi_like cd02845
PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be ...
 278-395 2.81e-64

PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.


Pssm-ID: 239211  Cd Length: 117  Bit Score: 210.96  E-value: 2.81e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 278 SETVLDFMFNLYQQTEEHKFQEQVSKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEIT 357
Cdd:cd02845     1 STTVLDRMHKLYRQETDERFREECEKELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSDGTEITFVEYYKKQYNIEIT 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1958669242 358 DLKQPVLVSQPKRRRGPGGTlPGPAMLIPELCYLTGLT 395
Cdd:cd02845    81 DLNQPLLVSRPKRRDPRGGE-KEPIYLIPELCFLTGLT 117
PAZ pfam02170
PAZ domain; This domain is named PAZ after the proteins Piwi Argonaut and Zwille. This domain ...
 282-415 2.11e-45

PAZ domain; This domain is named PAZ after the proteins Piwi Argonaut and Zwille. This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel factory protein. The function of the domains is unknown but has been suggested to mediate complex formation between proteins of the Piwi and Dicer families by hetero-dimerization. The three-dimensional structure of this domain has been solved. The PAZ domain is composed of two subdomains. One subdomain is similar to the OB fold, albeit with a different topology. The OB-fold is well known as a single-stranded nucleic acid binding fold. The second subdomain is composed of a beta-hairpin followed by an alpha-helix. The PAZ domains shows low-affinity nucleic acid binding and appears to interact with the 3' ends of single-stranded regions of RNA in the cleft between the two subdomains. PAZ can bind the characteriztic two-base 3' overhangs of siRNAs, indicating that although PAZ may not be a primary nucleic acid binding site in Dicer or RISC, it may contribute to the specific and productive incorporation of siRNAs and miRNAs into the RNAi pathway.


Pssm-ID: 460472  Cd Length: 123  Bit Score: 158.90  E-value: 2.11e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 282 LDFMFNLYQQTEEHKFQEQVSKELIGLIVLTKYNN-KTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLK 360
Cdd:pfam02170   1 LDFLKRLQQQKDRRDFRKEAKKALKGLKVYTTYNNpRTYRIDGITFDPTPESTFPLKDGKEITVVDYFKKKYNIDLKYPD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1958669242 361 QPVLVSQPKRRRgpggtlpgpAMLIPELCYltgLTDKMRNDFNVMKDLAVHTRLT 415
Cdd:pfam02170  81 QPLLLVGKKRPK---------VYLPPELCN---LVDGQRYTKKLMPSIAQRTRLL 123
PLN03202 PLN03202
protein argonaute; Provisional
 253-851 1.04e-42

protein argonaute; Provisional


Pssm-ID: 215631 [Multi-domain]  Cd Length: 900  Bit Score: 167.97  E-value: 1.04e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 253 GFTTSILQYENNIMLCTDVSHK-VLRSETVLDFMfnLYQQTEEHKFQ---EQVSKELIGLIVLTKYNNKTYRVddIDWDQ 328
Cdd:PLN03202  241 GFHSSFRTTQGGLSLNIDVSTTmIVQPGPVVDFL--IANQNVRDPFQidwSKAKRMLKNLRVKVSPSNQEYKI--TGLSE 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 329 NP--KSTF--KKADGS-------EVSFLEYYRKQYNQEIT---DLkqPVL-VSQPKRrrgpggtlpgPAMLIPELCYLTG 393
Cdd:PLN03202  317 KPckEQTFslKQRNGNgnevetvEITVYDYFVKHRGIELRysgDL--PCInVGKPKR----------PTYFPIELCSLVS 384

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 394 LTdkmrndfNVMKDLAVHTRLT--------PEQRQREVGR-LIDYIHKDDNVqreLRDWGLSFDSNLLSFSGRILQSEKI 464
Cdd:PLN03202  385 LQ-------RYTKALSTLQRSSlveksrqkPQERMKVLTDaLKSSNYDADPM---LRSCGISISSQFTQVEGRVLPAPKL 454

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 465 hQGGKTFDYNPQFADWSKETRgaPLISVKPLDNWLLIytrrNYEA---ANSLIQNLFKVTPAMGIQMKKAI-MIEVDD-- 538
Cdd:PLN03202  455 -KVGNGEDFFPRNGRWNFNNK--KLVEPTKIERWAVV----NFSArcdIRHLVRDLIKCGEMKGINIEPPFdVFEENPqf 527

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 539 -------RTEAYLRALQQKVTSDTQIVVCLLSsNRK--DKYDAIKKYLCTDCPTPSQCVVARTLGKQQTvmaiaTKIALQ 609
Cdd:PLN03202  528 rrapppvRVEKMFEQIQSKLPGPPQFLLCILP-ERKnsDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYL-----TNVLLK 601

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 610 MNCKMGG--ELWRVD----MPL--KL-AMIVGIDCYHDT--TAGRRSIAGFVASINEGMTRWFSRCV-FQDRGQELVDGL 677
Cdd:PLN03202  602 INAKLGGlnSLLAIEhspsIPLvsKVpTIILGMDVSHGSpgQSDVPSIAAVVSSRQWPLISRYRASVrTQSPKVEMIDSL 681

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 678 ----------KVCLQAALRAWSGCNEYMPSRVIVYRDGVGDGQLKTLVNYEVPQFLDCLKSVGRGYNPRLTVIVVKKRVN 747
Cdd:PLN03202  682 fkpvgdkdddGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHH 761

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 748 ARFFaQSGGRlQNPLPGTVIDVEVTRPEWYDFFIVSQAVRSGSVSPTHYNVIYDSSGLKPDHIQRLTYKLCHVYYNWPGV 827
Cdd:PLN03202  762 TKFF-QAGSP-DNVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTA 839

                         650       660
                  ....*....|....*....|....
gi 1958669242 828 IRVPAPCQYAHKLAFLVGQSIHRE 851
Cdd:PLN03202  840 ISVVAPVCYAHLAAAQMGQFMKFE 863
GAGE pfam05831
GAGE protein; This family consists of several GAGE and XAGE proteins which are found ...
 16-108 6.76e-25

GAGE protein; This family consists of several GAGE and XAGE proteins which are found exclusively in humans. The function of this family is unknown although they have been implicated in human cancers.


Pssm-ID: 461753  Cd Length: 107  Bit Score: 99.76  E-value: 6.76e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242  16 QETVQHVGAAAqSQQPGYIPPRPQQSPTEGDLVGRGRQRGmvVGATSKSQELQISAGFQELSLAERGGRRRDFHDLGVNT 95
Cdd:pfam05831  18 QESSQLVGPVV-AQQPSDEQPQQEEPPTESQDITPGQERE--DEGASAIQGPELEADLQELALEKTGGERGDGPDVKGKT 94

                          90
                  ....*....|...
gi 1958669242  96 RQNLDHVKESKTG 108
Cdd:pfam05831  95 LPNLEPVKMPEAG 107
PAZ cd02825
PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two ...
 280-392 1.04e-16

PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.


Pssm-ID: 239207  Cd Length: 115  Bit Score: 76.73  E-value: 1.04e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 280 TVLDFMFNLYQQTEEHK-----FQEQVSKELIGLIVLTKYN--NKTYRVDDIDWDQNPkSTFKKADGSEVSFLEYYRKQY 352
Cdd:cd02825     3 PVIETMCKFPKDREIDTplldsPREEFTKELKGLKVEDTHNplNRVYRPDGETRLKAP-SQLKHSDGKEITFADYFKERY 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1958669242 353 NQEITDLKQPVLVSQPKRRrgpggtLPGPAMLIPELCYLT 392
Cdd:cd02825    82 NLTLTDLNQPLLIVKFSSK------KSYSILLPPELCVIT 115
Piwi_piwi-like_ProArk cd04659
Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA ...
 534-845 1.44e-09

Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.


Pssm-ID: 240017 [Multi-domain]  Cd Length: 404  Bit Score: 60.86  E-value: 1.44e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 534 IEVDDRTEAYLRALQQKVTSDTQ----IVVCLLSSNRK-----DKYDAIKKYLcTDCPTPSQCVVARTLGKQQTVMAIAT 604
Cdd:cd04659    87 LNRSAQAEAIIEAVDLALSESSQgvdvVIVVLPEDLKElpeefDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAW 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 605 KIALQMNCKMGGELWRVD-MPLKLAMIVGIDCYHDTTAGRR--SIAGFVASINEGMTRWFSR--CVFQDRGQELV-DGLK 678
Cdd:cd04659   166 NLALALYAKLGGIPWKLDaDSDPADLYIGIGFARSRDGEVRvtGCAQVFDSDGLGLILRGAPieEPTEDRSPADLkDLLK 245

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 679 VCLQAALRAWsgcNEYMPSRVIVYRDGvgdgqlkTLVNYEVPQFLDCLKSVGRgynpRLTVIVVKKRVNARFFAQSG-GR 757
Cdd:cd04659   246 RVLEGYRESH---RGRDPKRLVLHKDG-------RFTDEEIEGLKEALEELGI----KVDLVEVIKSGPHRLFRFGTyPN 311

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 758 LQNPLPGTVIDVEVTRPewydFFIVSQAVRSGSVSPTHYN-----VIYDSSGLKPDHIQRLTYKLCHVYYNWP-GVIRVP 831
Cdd:cd04659   312 GFPPRRGTYVKLSDDEG----LLWTHGSVPKYNTYPGMGTprpllLRRHSGNTDLEQLASQILGLTKLNWNSFqFYSRLP 387

                         330
                  ....*....|....
gi 1958669242 832 APCQYAHKLAFLVG 845
Cdd:cd04659   388 VTIHYADRVAKLLK 401
PAZ_CAF_like cd02844
PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has ...
 301-389 2.89e-06

PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.


Pssm-ID: 239210  Cd Length: 135  Bit Score: 47.42  E-value: 2.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 301 VSKELIGLIVLTKYNNKTYrVDDIDWDQNPKSTFKKADGSEV-SFLEYYRKQYNQEITDLKQPVLVSQP----------- 368
Cdd:cd02844    27 CACDLKGSVVTAPHNGRFY-VISGILDLNANSSFPGKEGLGYaTYAEYFKEKYGIVLNHPNQPLLKGKQifnlhnllhnr 105

                          90       100
                  ....*....|....*....|....
gi 1958669242 369 KRRRGPGGTLPGP---AMLIPELC 389
Cdd:cd02844   106 FEEKGESEEKEKDryfVELPPELC 129
PAZ_argonaute_like cd02846
PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex ...
 301-389 3.99e-04

PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.


Pssm-ID: 239212 [Multi-domain]  Cd Length: 114  Bit Score: 40.76  E-value: 3.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 301 VSKELIGLIVLTKY---NNKTYRVDDIDWDQNPKSTFKKADGS-EVSFLEYYRKQYNQEITDLKQPVLVSQPKRRrgpgg 376
Cdd:cd02846    28 LKKALKGLKVEVTHrgnTNRKYKIKGLSAEPASQQTFELKDGEkEISVADYFKEKYNIRLKYPNLPCLQVGRKGK----- 102

                          90
                  ....*....|...
gi 1958669242 377 tlpgPAMLIPELC 389
Cdd:cd02846   103 ----PNYLPMELC 111
PAZ_dicer_like cd02843
PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA ...
 309-364 5.84e-04

PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.


Pssm-ID: 239209  Cd Length: 122  Bit Score: 40.51  E-value: 5.84e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958669242 309 IVLTKYNN----KTYRVDDIDWDQNPKSTFKKADGSevSFLEYYRKQYNQEITDLKQPVL 364
Cdd:cd02843    45 VVMPWYRNfdqpQYFYVAEICTDLRPLSKFPGPEYE--TFEEYYKKKYKLDIQNLNQPLL 102
ArgoL1 pfam08699
Argonaute linker 1 domain; ArgoL1 is a region found in argonaute proteins. It normally ...
 230-277 1.54e-03

Argonaute linker 1 domain; ArgoL1 is a region found in argonaute proteins. It normally co-occurs with pfam02179 and pfam02171. It is a linker region between the N-terminal and the PAZ domains. It contains an alpha-helix packed against a three-stranded antiparallel beta-sheet with two long beta-strands (beta8 and beta9) of the sheet spanning one face of the adjacent N and PAZ domains. L1 together with linker 2, L2, PAZ and ArgoN forms a compact global fold.


Pssm-ID: 462567  Cd Length: 52  Bit Score: 37.12  E-value: 1.54e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1958669242 230 IGRNYY--NPSDPIDIPNHRLVIWPGFTTSILQYENNIMLCTDVSHKVLR 277
Cdd:pfam08699   2 VGRSFFspPGENRVDLGGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFY 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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