|
Name |
Accession |
Description |
Interval |
E-value |
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
6-665 |
0e+00 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 871.92 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 6 GNSTLEDSLGQYQRSLRERANRSIHQLKCALREVDATIEEDALDPSTSINVENVDTGVAWHELQHSHAVNQLKALLRQQT 85
Cdd:pfam15964 1 GNSTLEESLGQYQRSLRERANRSIHQLKCALHESDSTISEDEQEESLSSVVQNEDSGSPWSELQHSHAVNQLKALLQQQT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 86 STENETSPRRRKLSPSRPSDCEDGSLPTMHNLVPIINDQSQYIHHLEAEVKFCKDELSSMKNRVQVVVLENERLQQELKS 165
Cdd:pfam15964 81 KKENELSPRRRKLSPSRTSEDESSSLPTVHDLVPIINDQSQYIHHLEAEVKFCKEELSEMKQRVQVVVLENEKLQQELKS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 166 QRQEETLREQTLLDMSGNVQNSWMkTREDSRVIETTKRPFSHGDAETGKAASTGDADKWRLELERLKLTYEAKTDLLESQ 245
Cdd:pfam15964 161 QTQEETLREQTLLDSSGNMQNSWC-TPEDSRVHQTSKRPASHNLAERLKSATTGEDEKWRLELEKLKLLYEAKTEVLESQ 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 246 LKLLRKDLVEYQKTCEDLKERLKHKESLVTASASSRVGGLCLKCAQHEAVLSQTHNNVHIQTIETLTKERDDLMSVLVSV 325
Cdd:pfam15964 240 VKSLRKDLAESQKTCEDLKERLKHKESLVAASTSSRVGGLCLKCAQHEAVLAQTHTNVHMQTIERLTKERDDLMSALVSV 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 326 RSSLAEAQERETSAYKQVKHAVQMTEEANFEKTKALIQCEQLRSELERQTDRLEKELASQQEKRALEKEMIKKEVTRERE 405
Cdd:pfam15964 320 RSSLAEAQQRESSAYEQVKQAVQMTEEANFEKTKALIQCEQLKSELERQKERLEKELASQQEKRAQEKEALRKEMKKERE 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 406 EAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEEVQNQLASQEMDVTKVCGEMRFQLNKTKMEKDEAEKEHKEYKAKS 485
Cdd:pfam15964 400 ELGATMLALSQNVAQLEAQVEKVTREKNSLVSQLEEAQKQLASQEMDVTKVCGEMRYQLNQTKMKKDEAEKEHREYRTKT 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 486 QKDLEMKDQEIEKLRLELSESTQQVEQEQQKAARARQECLQVTELLGESERQLHLTRLEKDSIQQSFSNEAKAQALQALQ 565
Cdd:pfam15964 480 GRQLEIKDQEIEKLGLELSESKQRLEQAQQDAARAREECLKLTELLGESEHQLHLTRLEKESIQQSFSNEAKAQALQAQQ 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 566 REQELTQKIQQMETQHDKTDSEQYLLLTSQNTFLTKLKEECCILAKKLEKVSLKSRSEIVQLSQEKRYLCDKLEKLQKRN 645
Cdd:pfam15964 560 REQELTQKMQQMEAQHDKTVNEQYSLLTSQNTFIAKLKEECCTLAKKLEEITQKSRSEVEQLSQEKEYLQDRLEKLQKRN 639
|
650 660
....*....|....*....|
gi 1958672613 646 DELEDQCVQHGRVHETMKER 665
Cdd:pfam15964 640 EELEEQCVQHGRMHERMKQR 659
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
367-651 |
9.91e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 9.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 367 LRSELERQTDRLEKE-------LASQQEKRALEKEMI----------KKEVTREREEAEAKMLILSQNIAKLEAEIEKIT 429
Cdd:COG1196 194 ILGELERQLEPLERQaekaeryRELKEELKELEAELLllklreleaeLEELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 430 REKTSAVSQLEEVQNQLASQEMDVTKVCGEMRFQLNKTKMEKDEAEKEHKEyKAKSQKDLEMKDQEIEKLRLELSESTQQ 509
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE-LAELEEELEELEEELEELEEELEEAEEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 510 VEQEQQKAARARQECLQVTELLGESERQLhltrlekdsiqqsfsNEAKAQALQALQREQELTQKIQQMETQHDKTDSEQY 589
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEAEEEL---------------EELAEELLEALRAAAELAAQLEELEEAEEALLERLE 417
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958672613 590 LLLTSQNTFLTKLKEEcCILAKKLEKVSLKSRSEIVQLSQEKRYLCDKLEKLQKRNDELEDQ 651
Cdd:COG1196 418 RLEEELEELEEALAEL-EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
228-569 |
5.89e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 5.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 228 LERLK-LTYEaktdlLESQLKLLRKD---LVEYQKtcedLKERLKHKESLVTASAssrvgglcLKCAQHEAVLSQTHNNV 303
Cdd:COG1196 188 LERLEdILGE-----LERQLEPLERQaekAERYRE----LKEELKELEAELLLLK--------LRELEAELEELEAELEE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 304 HIQTIETLTKERDDLMSVLVSVRSSLAEAQERETSAykQVKHAVQMTEEANFEKTKALIQceQLRSELERQTDRLEKELA 383
Cdd:COG1196 251 LEAELEELEAELAELEAELEELRLELEELELELEEA--QAEEYELLAELARLEQDIARLE--ERRRELEERLEELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 384 SQQEKRALEKEMIkKEVTREREEAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEEVQNQLASQEMDvtkvcgemRFQ 463
Cdd:COG1196 327 ELEEELEELEEEL-EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA--------AAE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 464 LNKTKMEKDEAEKEHKEYKAKSQKDLEMKDQEIEKLRLELSESTQQVEQEQQKAARARQECLQVTELLGESERQLHLTRL 543
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
330 340
....*....|....*....|....*.
gi 1958672613 544 EKDSIQQSFSNEAKAQALQALQREQE 569
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADY 503
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
400-649 |
4.84e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 4.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 400 VTREREEAEAKMLILSQNIAKLEAEIEKIT---REKTSAVSQLEEVQNQLASQEMDVTKVCGEMRFQLNKTKMEKDEAEK 476
Cdd:TIGR02168 661 ITGGSAKTNSSILERRREIEELEEKIEELEekiAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 477 EHKEYK----------AKSQKDLEMKDQEIEKLRLELSESTQQVEQEQQKAARARQECLQVTELLGESERQLHLTRLE-- 544
Cdd:TIGR02168 741 EVEQLEeriaqlskelTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEaa 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 545 -KDSIQQSFSNEAKAQALQALQREQELTQKIQQMETQHDKTDSEQYLL--LTSQNTFLTKLKEECCILAKKLEKVSLKSR 621
Cdd:TIGR02168 821 nLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIeeLESELEALLNERASLEEALALLRSELEELS 900
|
250 260
....*....|....*....|....*...
gi 1958672613 622 SEIVQLSQEKRYLCDKLEKLQKRNDELE 649
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLE 928
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
356-651 |
6.40e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 6.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 356 EKTKALIQCEQLRSELERQTDRLEK--ELASQQEKRALEKEMIKKEVTRE-REEAEAKMLILSQNIAKLEAEIEKITREK 432
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKltEEISELEKRLEEIEQLLEELNKKiKDLGEEEQLRVKEKIGELEAEIASLERSI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 433 TSAVSQLEEVQNQLASQEMdvtkvcgemrfQLNKTKMEKDEAEKEHKEYKAKSQKDLEmkdqEIEKLRLELSESTQQVEQ 512
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEA-----------EIDKLLAEIEELEREIEEERKRRDKLTE----EYAELKEELEDLRAELEE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 513 EQQKAARARQECLQVTELLGESERQLHLTRLEKDSIQQsfsneakaQALQALQREQELTQKIQQMETQHDKTDSEqyllL 592
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE--------ELQRLSEELADLNAAIAGIEAKINELEEE----K 443
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958672613 593 TSQNTFLTKLKEECCILAKKLEKVslksRSEIVQLSQEKRYLCDKLEKLQKRNDELEDQ 651
Cdd:TIGR02169 444 EDKALEIKKQEWKLEQLAADLSKY----EQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
308-580 |
2.25e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 2.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 308 IETLTKERDDLMSVLVSVRSSLAEAQERETSAYKQVKHAVQMTEEANFEKTKALIQCEQLRSELERQTDRLEkelasQQE 387
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA-----QLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 388 KRALEKEMIKKEVTREREEAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEEVQNQLASQEMDVTKV---CGEMRFQL 464
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLrerLESLERRI 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 465 NKTKMEKDEAEKEHKEYK-----------------AKSQKDLEMKDQE-------IEKLRLELSESTQQVEQEQQKAARA 520
Cdd:TIGR02168 834 AATERRLEDLEEQIEELSedieslaaeieeleeliEELESELEALLNErasleeaLALLRSELEELSEELRELESKRSEL 913
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 521 RQECLQVTELLGESERQLHLTRLEKDSIQQSFSNEAKAQALQALQREQELTQKIQQMETQ 580
Cdd:TIGR02168 914 RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRR 973
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
329-588 |
2.53e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 2.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 329 LAEAQERETSAYKQVKHAVQMTEEANFEKTKALIQCEQLRSELERQTDRLEkelASQQEKRALEKEMIKKEVTREREEAE 408
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE---EAQAEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 409 AKMLilSQNIAKLEAEIEKITREKTSAVSQLEEVQNQLASQEMDVTkvcgEMRFQLNKTKMEKDEAEKEHKEYKAKSQKD 488
Cdd:COG1196 311 RREL--EERLEELEEELAELEEELEELEEELEELEEELEEAEEELE----EAEAELAEAEEALLEAEAELAEAEEELEEL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 489 LEMKDQEIEKLRLELSESTQQVEQEQQKA---ARARQECLQVTELLGESERQLHLTRLEKDSIQQSfSNEAKAQALQALQ 565
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLerlERLEEELEELEEALAELEEEEEEEEEALEEAAEE-EAELEEEEEALLE 463
|
250 260
....*....|....*....|...
gi 1958672613 566 REQELTQKIQQMETQHDKTDSEQ 588
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEEL 486
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
325-587 |
3.12e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 3.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 325 VRSSLAEAQERETSAYKQVKHAVQMTEEANFEKTKA---LIQCEQLRSELERQTDRLEKELASQQEKRALEKEMIKkEVT 401
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLrkeLEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT-ELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 402 REREEAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEEVQNQLASQEMDVTkvcgemrfQLNKTKMEKDEAEKEHKEY 481
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT--------LLNEEAANLRERLESLERR 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 482 KAKSQKDLEMKDQEIEKLRLELSESTQQVEQEQQKAARARQECLQVTELLGESERQLHLTRLEKDSIQQSFsNEAKAQAL 561
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL-RELESKRS 911
|
250 260
....*....|....*....|....*.
gi 1958672613 562 QALQREQELTQKIQQMETQHDKTDSE 587
Cdd:TIGR02168 912 ELRRELEELREKLAQLELRLEGLEVR 937
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
227-518 |
1.18e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 1.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 227 ELERLKLTYEAKTDLLESQLKLLRKDLVEYQKTCEDLKERLKHKESLVTASASSRVgglclkcaqheavlsqthnnVHIQ 306
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA--------------------RLEA 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 307 TIETLTKERDDLMSVLVSVRSSLAEAQERETSAYKQVKHAVQMTEEANFEKTKALIQCEQLRS---ELERQTDRLEKELA 383
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREaldELRAELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 384 SQQEKRA-LEKEMIKKEVTREREEAEAKmlILSQNIAKLEAEIEKITREKTSAVSQLEEVQNQLASQEmdvtkvcgEMRF 462
Cdd:TIGR02168 821 NLRERLEsLERRIAATERRLEDLEEQIE--ELSEDIESLAAEIEELEELIEELESELEALLNERASLE--------EALA 890
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958672613 463 QLNKTKMEKDEAEKEHKEYKAKSQKDLEMKDQEIEKLRLELSESTQQVEQEQQKAA 518
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
366-580 |
2.55e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 2.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 366 QLRSELERQTDRLEKELASQQEKRALEKEMiKKEVTREREEAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEEVQNQ 445
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKE-EKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 446 LASQEMDVTKVCGEMrFQLNKTKMEKDEAEKEHKEYKAKSQKDLEMKDQEIEKLRLELSESTQQVEQEQQKAARARQECL 525
Cdd:COG4942 99 LEAQKEELAELLRAL-YRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958672613 526 QVTELLGESERQLHLTRLEKDSIQQSFSNEAKA--QALQALQR-EQELTQKIQQMETQ 580
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAElaAELAELQQeAEELEALIARLEAE 235
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
369-650 |
2.57e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 2.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 369 SELERQTDRLEKELASQQEKRALEKEMIKKEVT---REREEAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEEVQNQ 445
Cdd:TIGR02169 194 DEKRQQLERLRREREKAERYQALLKEKREYEGYellKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQL 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 446 LASQEMDVTKVCGEMRFQLnKTKMEKDEAEKEHKEYK-AKSQKDLEMKDQEIEKLRLELSESTQQVEQEQQKAARARQEC 524
Cdd:TIGR02169 274 LEELNKKIKDLGEEEQLRV-KEKIGELEAEIASLERSiAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 525 LQVTELLGESERQLHLTRLEKDSIQQSFSnEAKAQALQALQREQELTQKIQQMETQHDKTDSEQYLL----------LTS 594
Cdd:TIGR02169 353 DKLTEEYAELKEELEDLRAELEEVDKEFA-ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLseeladlnaaIAG 431
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958672613 595 QNTFLTKLKEECCILAKKLEKVSLKSRSEIVQLSQEKRYLCDKLEKLQKRNDELED 650
Cdd:TIGR02169 432 IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
308-568 |
4.22e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 4.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 308 IETLTKERDDLMSVLVSVRSSLAEAQERETSAYKQVKHAVQMTEEANFEKTKALIQCEQL---RSELERQTDRLEKELAS 384
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELeaqLEELESKLDELAEELAE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 385 QQEKraleKEMIKKEVTRERE---EAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEEVQNQLASQEMDVTKVCGEmr 461
Cdd:TIGR02168 342 LEEK----LEELKEELESLEAeleELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR-- 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 462 fqLNKTKMEKDEAEKEHKEY-KAKSQKDLEMKDQEIEKLRLELSESTQQVEQEQQKAARARQECLQVTELLGESERQLHL 540
Cdd:TIGR02168 416 --RERLQQEIEELLKKLEEAeLKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
|
250 260
....*....|....*....|....*...
gi 1958672613 541 TRlekdSIQQSFSNEAKAQALQALQREQ 568
Cdd:TIGR02168 494 LE----RLQENLEGFSEGVKALLKNQSG 517
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
294-550 |
6.23e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.84 E-value: 6.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 294 AVLSQTHNNVHIQTIETLTKERddlmsvLVSVRSSLAEAQERETSAYKQVKhavQMTEEANFEKTKALIQCEQLRSELER 373
Cdd:pfam12128 256 AELRLSHLHFGYKSDETLIASR------QEERQETSAELNQLLRTLDDQWK---EKRDELNGELSAADAAVAKDRSELEA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 374 QTDRLEKELASQQEKRALEKEMIKkEVTREREEAEAKMLILSQNIAKLEAEIE------------KITREKTSAVSQLEE 441
Cdd:pfam12128 327 LEDQHGAFLDADIETAAADQEQLP-SWQSELENLEERLKALTGKHQDVTAKYNrrrskikeqnnrDIAGIKDKLAKIREA 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 442 VQNQLASQEMDVTKVCGEMRFQLNKTKMEKDEAEKEHKE-------------YKAKSQKDLEMKDQEIEKLRLELSESTQ 508
Cdd:pfam12128 406 RDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSrlgelklrlnqatATPELLLQLENFDERIERAREEQEAANA 485
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1958672613 509 QVEQEQQKAARARQECLQVTELLGESERQLHLTRLEKDSIQQ 550
Cdd:pfam12128 486 EVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELEL 527
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
365-574 |
6.32e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 6.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 365 EQLRSELERQTDRLEKELASQQEK-RALEKEMikkEVTRERE---EAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLE 440
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKElEEAEAAL---EEFRQKNglvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 441 EVQNQLASQEMDVTKVCGEMRFQLNKTKMEKDEAEkehkeyKAKSQKDLEMKDQEIEKLRLELSESTQQVEQEQQKAARA 520
Cdd:COG3206 244 ALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAE------LAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILAS 317
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958672613 521 RQeclqvTELLGESERQLHLTRLEKDSIQQSFSNEAKAQALQALQREQELTQKI 574
Cdd:COG3206 318 LE-----AELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVAREL 366
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
124-490 |
8.70e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 8.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 124 QSQYIHHLEAEVKFCKDELSSMKNRVQVVVLENERLQQELKSQRQEETLREQTLLDMSGNVQNSWMKTREDSRVIETTKR 203
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 204 PFSHGDAE-TGKAASTGDADKWRLELERLKLTYEAKTDLLESQLKLLRKDLVEYQKTCEDLKERLkhkeslvtASASSRV 282
Cdd:TIGR02168 755 ELTELEAEiEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA--------ANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 283 GGLclkcaQHEAVLSQTHNNVHIQTIETLTKERDDLMSVLVSVRSSLAEAQERETSAYKQVKHAVQMTEEANFEKTKA-- 360
Cdd:TIGR02168 827 ESL-----ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELse 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 361 -LIQCEQLRSELERQTDRLEKELASQQEKRALEKEMIKKEVTREREEAEAKMLILSQNIAKLEAEIEKITREKTSAVSQL 439
Cdd:TIGR02168 902 eLRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1958672613 440 EEVQNqlasqemdvtkvcgemrfqLNKTKMEKDEAEKEHKEYKAKSQKDLE 490
Cdd:TIGR02168 982 KELGP-------------------VNLAAIEEYEELKERYDFLTAQKEDLT 1013
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
363-588 |
9.38e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 9.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 363 QCEQLRsELERQTDRLEKELASQQEKRALEKEMIKKEVTREREEAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEEV 442
Cdd:COG4913 250 QIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 443 QNQLASQEMDvtkvcgemrfQLNKTKMEKDEAEKEHKEYKAKSQKDlemkDQEIEKLRLELSESTQQVEQEQQKAARARQ 522
Cdd:COG4913 329 EAQIRGNGGD----------RLEQLEREIERLERELEERERRRARL----EALLAALGLPLPASAEEFAALRAEAAALLE 394
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958672613 523 eclQVTELLGESERQLHltrlekdsiqqsfsnEAKAQALQALQREQELTQKIQQMETQHDKTDSEQ 588
Cdd:COG4913 395 ---ALEEELEALEEALA---------------EAEAALRDLRRELRELEAEIASLERRKSNIPARL 442
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
313-663 |
1.33e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 313 KERDDLMSVLVSVRSSLAEAQERETSAYKQVKHAVQMTEEANFEKTKALIQCEQLRSELERQTDRLEKELASQQEKRALE 392
Cdd:PTZ00121 1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 393 KEMIKKEVTREREEAEAKmlilsQNIAKLEAEIEKITREKTSAVSQLEEVQNQLASQEMDVTKVCGEMRFQLNKTKMEKD 472
Cdd:PTZ00121 1327 AKKKADAAKKKAEEAKKA-----AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 473 EAEKEHKEYKAKS---QKDLEMKDQEIEKLRLELSESTQQVEQEQQKAARARQECLQVTELLGESERQLHLTRLEKDSIQ 549
Cdd:PTZ00121 1402 EDKKKADELKKAAaakKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 550 QSFSNEAKAQALQALQREQELTQKIQQMETQHDKTDSEQYLLLTSQNTFLTKLKEECCILAKKLEKVSLKSRSEIVQLSQ 629
Cdd:PTZ00121 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAE 1561
|
330 340 350
....*....|....*....|....*....|....*...
gi 1958672613 630 EKRYLCDKLEKLQKRNDEL----EDQCVQHGRVHETMK 663
Cdd:PTZ00121 1562 EKKKAEEAKKAEEDKNMALrkaeEAKKAEEARIEEVMK 1599
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
403-651 |
1.37e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 403 EREEAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEEVQNQLASQEMDVtkvcgemrfqlnktkmekdeaekehkeyk 482
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRI----------------------------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 483 AKSQKDLEMKDQEIEKLRLELSEstQQVEQEQQKAARARQecLQVTELLGESERQLHLtrLEKDSIQQSFSNEAKAQALQ 562
Cdd:COG4942 72 RALEQELAALEAELAELEKEIAE--LRAELEAQKEELAEL--LRALYRLGRQPPLALL--LSPEDFLDAVRRLQYLKYLA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 563 ALQREQ--ELTQKIQQMETQHDKTDSEQylllTSQNTFLTKLKEEccilAKKLEKVSLKSRSEIVQLSQEKRYLCDKLEK 640
Cdd:COG4942 146 PARREQaeELRADLAELAALRAELEAER----AELEALLAELEEE----RAALEALKAERQKLLARLEKELAELAAELAE 217
|
250
....*....|.
gi 1958672613 641 LQKRNDELEDQ 651
Cdd:COG4942 218 LQQEAEELEAL 228
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
399-549 |
2.38e-04 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 43.59 E-value: 2.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 399 EVTREREEAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEEVQNQLASQEMDVTKVCGEMRFQLNKTKMEKDEAEKEH 478
Cdd:pfam09787 51 ELRQERDLLREEIQKLRGQIQQLRTELQELEAQQQEEAESSREQLQELEEQLATERSARREAEAELERLQEELRYLEEEL 130
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958672613 479 KEYKAKSQKDLEMKDQEIEKLRLELSESTQQVEQEQQKAARARqeclQVTELLGESERQLHLTRLEKDSIQ 549
Cdd:pfam09787 131 RRSKATLQSRIKDREAEIEKLRNQLTSKSQSSSSQSELENRLH----QLTETLIQKQTMLEALSTEKNSLV 197
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
356-667 |
2.49e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 2.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 356 EKTKALIQCEQLRSELERQTDRLEKELAS-QQEKRALEKEMIKKEVTREREEAEAKMLILSQNiaKLEAEIEKITREKTS 434
Cdd:pfam02463 170 KKKEALKKLIEETENLAELIIDLEELKLQeLKLKEQAKKALEYYQLKEKLELEEEYLLYLDYL--KLNEERIDLLQELLR 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 435 AVSQLEEVQNQLASQEMD----VTKVCGEMRFQLNKTKME-----KDEAEKEHKEYKAKSQKDLEMKDQEIEKLRLELSE 505
Cdd:pfam02463 248 DEQEEIESSKQEIEKEEEklaqVLKENKEEEKEKKLQEEElkllaKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 506 STQQVEQEQQKAARARQECLQVTELLGESERQLHLTRLEKDSIQQSFSNEAKAQALQALQREQELTQKIQQMETQHDKTD 585
Cdd:pfam02463 328 KELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 586 SEQYLLLTSQNTFLTKLKEECCILAKKLEKVSLKSRSEIVQLS-----QEKRYLCDKLEKLQKRNDELEDQCVQHGRVHE 660
Cdd:pfam02463 408 QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKeelekQELKLLKDELELKKSEDLLKETQLVKLQEQLE 487
|
....*..
gi 1958672613 661 TMKERDR 667
Cdd:pfam02463 488 LLLSRQK 494
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
322-480 |
2.71e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 322 LVSVRSSLAEAQERETSAYKQVKHAvqmTEEANFEKTKALIQC----EQLRSELERQTDRLEKELAsQQEKRALEKEMI- 396
Cdd:PRK12704 23 FVRKKIAEAKIKEAEEEAKRILEEA---KKEAEAIKKEALLEAkeeiHKLRNEFEKELRERRNELQ-KLEKRLLQKEENl 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 397 ---KKEVTREREEAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEEVQNQLASQ--EMDVTKVCGEMRFQ----LNKT 467
Cdd:PRK12704 99 drkLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEakEILLEKVEEEARHEaavlIKEI 178
|
170
....*....|....
gi 1958672613 468 KME-KDEAEKEHKE 480
Cdd:PRK12704 179 EEEaKEEADKKAKE 192
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
225-588 |
2.90e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 2.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 225 RLELERLKLTYEAKTDLLESQLKLLRKDLVEYQKTCEDLKER---LKHKESLVTASASSRVGGLCLKCAQHEAVLSQTHN 301
Cdd:pfam15921 330 RSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQEsgnLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTG 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 302 NVhiQTIETLTKERDD-------LMSVLVSVRSSLAEAQERETSAYKQVKHAVQMTEE--ANFEKTKALIQ--CEQLRSE 370
Cdd:pfam15921 410 NS--ITIDHLRRELDDrnmevqrLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSltAQLESTKEMLRkvVEELTAK 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 371 ---LERQTDRLEKELASQQEK-RALEKemIKKEVTREREEAEAKMlilsQNIAKLEAEIEKITREKTSA------VSQLE 440
Cdd:pfam15921 488 kmtLESSERTVSDLTASLQEKeRAIEA--TNAEITKLRSRVDLKL----QELQHLKNEGDHLRNVQTECealklqMAEKD 561
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 441 EVQNQLASQEMDVTKVCGEMRFQLNKTKMEKDEAEKEHKEYKAKSQKDLEMKDQEIEKLRlELSESTQQVEQEQQKAARA 520
Cdd:pfam15921 562 KVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIR-ELEARVSDLELEKVKLVNA 640
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958672613 521 RQECLQVTELLGESERQL----HLTRLEKDSIQQSFsnEAKAQALQALQREQELTQKIQQMETQHDKTDSEQ 588
Cdd:pfam15921 641 GSERLRAVKDIKQERDQLlnevKTSRNELNSLSEDY--EVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQ 710
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
368-583 |
2.97e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 368 RSELERQTDRLEKELASQQEKRALEKEMIKkEVTREREEaeakmliLSQNIAKLEAEIEkitrektSAVSQLEEVQNQLA 447
Cdd:COG3096 280 RRELSERALELRRELFGARRQLAEEQYRLV-EMARELEE-------LSARESDLEQDYQ-------AASDHLNLVQTALR 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 448 SQEmdvtKV------CGEMRFQLNKTKMEKDEAEKEHKEYKAKsqkdLEMKDQEIEKLRLELSEsTQQVEQEQQKAARAR 521
Cdd:COG3096 345 QQE----KIeryqedLEELTERLEEQEEVVEEAAEQLAEAEAR----LEAAEEEVDSLKSQLAD-YQQALDVQQTRAIQY 415
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958672613 522 QECLQVtelLGESERQLHLTRLEKDSIQQSFSnEAKAQALQALQREQELTQKIQQME---TQHDK 583
Cdd:COG3096 416 QQAVQA---LEKARALCGLPDLTPENAEDYLA-AFRAKEQQATEEVLELEQKLSVADaarRQFEK 476
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
329-584 |
5.46e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 5.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 329 LAEAQE-RETSAYKQVKHAVQMTEEANFEKTKALI--QCEQLRSELERQTDRLEKELASQQEKRAlEKEMIKKEVTRERE 405
Cdd:PTZ00121 1551 LKKAEElKKAEEKKKAEEAKKAEEDKNMALRKAEEakKAEEARIEEVMKLYEEEKKMKAEEAKKA-EEAKIKAEELKKAE 1629
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 406 EAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEevqnQLASQEMDVTKVCGEMRfqlnktkmeKDEAEKEHKEYKAKS 485
Cdd:PTZ00121 1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA----EEAKKAEEDKKKAEEAK---------KAEEDEKKAAEALKK 1696
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 486 QKDLEMKDQEIEKLRLELSESTQQVEQEQQKAARARQECLQVTELLGESERQLHLTRLEKDSIQQSFSNEAKAQALQALQ 565
Cdd:PTZ00121 1697 EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
250 260
....*....|....*....|...
gi 1958672613 566 R----EQELTQKIQQMETQHDKT 584
Cdd:PTZ00121 1777 KeaviEEELDEEDEKRRMEVDKK 1799
|
|
| PRK00247 |
PRK00247 |
putative inner membrane protein translocase component YidC; Validated |
383-521 |
9.48e-04 |
|
putative inner membrane protein translocase component YidC; Validated
Pssm-ID: 178945 [Multi-domain] Cd Length: 429 Bit Score: 42.15 E-value: 9.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 383 ASQQEKRAL--EKEMIKKEVTREREEAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEEVQNQLASQEMDVTKVCGEM 460
Cdd:PRK00247 285 EHHAEQRAQyrEKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINRE 364
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958672613 461 RFQLNKTKMEKDEAEKEHKEYKAKSQKDLEMKDQEIEKLRLELSESTQQVEQEQQKAARAR 521
Cdd:PRK00247 365 ARQERAAAMARARARRAAVKAKKKGLIDASPNEDTPSENEESKGSPPQVEATTTAEPNREP 425
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
228-454 |
9.81e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 9.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 228 LERLKLTYEAKTDLLESQLKLLRKDLVEYQKTCEDLKErlkhkeslvtasassrvgglclkcaQHEAVLSQTHNNVHIQT 307
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQ-------------------------KNGLVDLSEEAKLLLQQ 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 308 IETLTKErddlmsvLVSVRSSLAEAQERETSAYKQVKHAVQMTEEANfeKTKALIQCEQLRSELERQTDRLEK------- 380
Cdd:COG3206 221 LSELESQ-------LAEARAELAEAEARLAALRAQLGSGPDALPELL--QSPVIQQLRAQLAELEAELAELSArytpnhp 291
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958672613 381 ELASQQEKRALEKEMIKKEVTREREEAEAKMLILSQNIAKLEAEIEKITREktsaVSQLEEVQNQLASQEMDVT 454
Cdd:COG3206 292 DVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR----LAELPELEAELRRLEREVE 361
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
225-450 |
1.22e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 225 RLELERLKLTYEAKTDLLESQLKLLRKDLVEYQKTCEDLKERLKHKE---------------SLVTASASSRVGGLCLKC 289
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEqqkqilrerlanlerQLEELEAQLEELESKLDE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 290 AQHEAVLSQTHNNVHIQTIETLTKERDDLMSVLVSVRSSLAEAQERETSAYKQVKHAVQMTEEANFEKTKALIQCEQLRS 369
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 370 ELERQTDRLEKELASQQEKRALEKEMIKKEVTREREEAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEEVQNQLASQ 449
Cdd:TIGR02168 415 RRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494
|
.
gi 1958672613 450 E 450
Cdd:TIGR02168 495 E 495
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
361-545 |
1.34e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 361 LIQCEQLRSELERQTDRLEKELASQQEKRALEKEMIKKEVTREREEAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLE 440
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 441 EVQNQLAsqemdvtkvcgEMRFQLNKTKMEKDEAEKEHKEYKAKSQKDLEMKDQEIEKLRLELSESTQQVEQEQQKAARA 520
Cdd:COG4717 150 ELEERLE-----------ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180
....*....|....*....|....*
gi 1958672613 521 RQECLQVTELLGESERQLHLTRLEK 545
Cdd:COG4717 219 QEELEELEEELEQLENELEAAALEE 243
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
306-520 |
1.72e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 306 QTIETLTKERDDLMSVLVSVRSSLAEAQERETSAYKQVKHAVQMTEEANFEKTKALIQCEQLRSELERQTDRLEKELASQ 385
Cdd:COG4942 34 QEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRAL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 386 QEKRALEKEMIK------KEVTREREEAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEEVQNQLASQEmdvtkvcgE 459
Cdd:COG4942 114 YRLGRQPPLALLlspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE--------E 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958672613 460 MRFQLNKTKMEKDEAEKEHKEYKAKSQKDLEMKDQEIEKLRLELSESTQQVEQEQQKAARA 520
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
236-431 |
1.97e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 236 EAKTDLLESQLKLLRKDLVEYQKTCEDLKERLKHKESLvtASASSRVGGLCLKCAQHEAVLSQthnnvhiqtIETLTKER 315
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQER--REALQRLAEYSWDEIDVASAERE---------IAELEAEL 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 316 DDL---MSVLVSVRSSLAEAQERETSAYKQVKHAVQMTEEANFEKTKALIQCEQLRSELERQTDRLEKELASQQEKRaLE 392
Cdd:COG4913 678 ERLdasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEER-FA 756
|
170 180 190
....*....|....*....|....*....|....*....
gi 1958672613 393 KEMIKKEVTREREEAEAKMLILSQNIAKLEAEIEKITRE 431
Cdd:COG4913 757 AALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
227-409 |
2.53e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 227 ELERLKLTYEAKTDLLESQLKLLRKDLVEYQKTCEDLKERLKhkESLVTASASSRVGGLCLKCAQHEAVLSQTHnnvhIQ 306
Cdd:COG4942 66 ALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA--ELLRALYRLGRQPPLALLLSPEDFLDAVRR----LQ 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 307 TIETLTKERDDLMSVLVSVRSSLAEAQERETSAYKQVKHAVQMTEEANFEKTKALIQCEQLRSELERQTDRLEKELASQQ 386
Cdd:COG4942 140 YLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ 219
|
170 180
....*....|....*....|...
gi 1958672613 387 EKRALEKEMIKKEVTREREEAEA 409
Cdd:COG4942 220 QEAEELEALIARLEAEAAAAAER 242
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
322-646 |
2.62e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 322 LVSVRSSLAEAQERETSAYKQVKHAVQMTEEA--NFEKTKALIQCEQLR-SELERQ-TDRLEKELASQQEKRALEK---E 394
Cdd:pfam17380 277 IVQHQKAVSERQQQEKFEKMEQERLRQEKEEKarEVERRRKLEEAEKARqAEMDRQaAIYAEQERMAMERERELERirqE 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 395 MIKKEVTREREEAEAKMLILSQNIAKLEAEiekiTREKTSAVSQLEEVQNQLASQEMDVTKVCGEMRFQLNKTKMEKDEA 474
Cdd:pfam17380 357 ERKRELERIRQEEIAMEISRMRELERLQME----RQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEA 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 475 EKEhkeykaKSQKDLEMKDQEIEKLRLELSESTQQVEQEQQKAARARQECLqvtELLGESERQLHLTRLEKDSIQQSFsn 554
Cdd:pfam17380 433 RQR------EVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKL---ELEKEKRDRKRAEEQRRKILEKEL-- 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 555 EAKAQALQALQREQELTQKiqQMETQHDKTDSEQYLLLTSQNTFLTKLKEECCILAKKLEKVSlKSRSEIVQLSQEKRYL 634
Cdd:pfam17380 502 EERKQAMIEEERKRKLLEK--EMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKAT-EERSRLEAMEREREMM 578
|
330
....*....|..
gi 1958672613 635 CDKLEKLQKRND 646
Cdd:pfam17380 579 RQIVESEKARAE 590
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
440-651 |
3.82e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 440 EEVQNQLASQEMDVTKV---CGEMRFQLNKTKMEKDEAEKeHKEYKAksqkdlEMKDQEIEKLRLELSESTQQVEQEQQK 516
Cdd:TIGR02168 175 KETERKLERTRENLDRLediLNELERQLKSLERQAEKAER-YKELKA------ELRELELALLVLRLEELREELEELQEE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 517 AARARQECLQVTELLGESERQLHLTRLEKdsiqqsfsNEAKAQALQALQREQELTQKIQQMETQHDKTDSEQYLLLTSQ- 595
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEV--------SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLe 319
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958672613 596 --NTFLTKLKEECCILAKKLEKVSLKSRS---EIVQLSQEKRYLCDKLEKLQKRNDELEDQ 651
Cdd:TIGR02168 320 elEAQLEELESKLDELAEELAELEEKLEElkeELESLEAELEELEAELEELESRLEELEEQ 380
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
242-513 |
5.50e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 5.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 242 LESQLKLLRKDLVEYQKTCEDLKERLKHKESLVTASASSrvgglcLKCAQHEAVLSQTHNNVHIQTIETLTKERDDLMSV 321
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE------LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 322 LVSVRSSLAEAQ------ERETSAYKQVKHAVQMTEEANF---------EKTKALIQCEQLRSELERQTDRLEKELASQQ 386
Cdd:TIGR02169 746 LSSLEQEIENVKselkelEARIEELEEDLHKLEEALNDLEarlshsripEIQAELSKLEEEVSRIEARLREIEQKLNRLT 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 387 EKRALEKEmikkevtrEREEAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEEVQNQLAsqemdvtkvcgEMRFQLNK 466
Cdd:TIGR02169 826 LEKEYLEK--------EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR-----------DLESRLGD 886
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1958672613 467 TKMEKDEAEKEHKEYKAKSQkDLEMKDQEIEKLRLELSESTQQVEQE 513
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIE-ELEAQIEKKRKRLSELKAKLEALEEE 932
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
370-516 |
5.93e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 39.61 E-value: 5.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 370 ELERQTDRLEKELASQQEKRALEKEMIkkevtrerEEAEAKMlilSQNIAKLEAEIEKITREKTSAVSQLEEVQNQLASQ 449
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNI--------EEQRKKN---GENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958672613 450 EM---DVTKVCGEMRFQLNKTKMEKDEAEKEHKEYKAKS-----QKDLEMKDQEIEKLRLELSESTQQVEQEQQK 516
Cdd:PHA02562 247 VMdieDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGvcptcTQQISEGPDRITKIKDKLKELQHSLEKLDTA 321
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
305-559 |
7.58e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 39.74 E-value: 7.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 305 IQTIETLTKERDDLMSVLVSVRSSLAEAQERETSAYKQVKHAVQMTEEANFEKTKALIQCEQLRSELERQTDRLEKELAS 384
Cdd:PTZ00121 1563 KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKE 1642
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 385 QQEKRALEKEMIKKEVTREREEAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEEVQ---NQLASQEMDVTKVCGEMR 461
Cdd:PTZ00121 1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAkkaEELKKKEAEEKKKAEELK 1722
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 462 FQLNKTKMEKDEAEKEHKEYKAKSQkdlEMKDQEIEKLRLElsestQQVEQEQQKAARARQECLQVTELLGESERQLHLT 541
Cdd:PTZ00121 1723 KAEEENKIKAEEAKKEAEEDKKKAE---EAKKDEEEKKKIA-----HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM 1794
|
250
....*....|....*...
gi 1958672613 542 RLEKdSIQQSFSNEAKAQ 559
Cdd:PTZ00121 1795 EVDK-KIKDIFDNFANII 1811
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
459-539 |
8.17e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 39.29 E-value: 8.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 459 EMRFQLNKTKMEKDEAEKEHKEykaKSQKDLEMKDQEIEKLRLELSESTQQVEQEQQKAAR---ARQECLQVTELLGESE 535
Cdd:COG0542 415 ELERRLEQLEIEKEALKKEQDE---ASFERLAELRDELAELEEELEALKARWEAEKELIEEiqeLKEELEQRYGKIPELE 491
|
....
gi 1958672613 536 RQLH 539
Cdd:COG0542 492 KELA 495
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
493-587 |
8.26e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 39.59 E-value: 8.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 493 DQEIEKLRLELSESTQqvEQEQQKAARARQECLQVTELLGESERQLHLTRLEK--DSIQQSFSNEAKAQALQALQREQEL 570
Cdd:pfam13779 508 DEEIAKLMQELREALD--DYMQALAEQAQQNPQDLQQPDDPNAQEMTQQDLQRmlDRIEELARSGRRAEAQQMLSQLQQM 585
|
90
....*....|....*....
gi 1958672613 571 TQKIQ--QMETQHDKTDSE 587
Cdd:pfam13779 586 LENLQagQPQQQQQQGQSE 604
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
365-523 |
8.44e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 39.22 E-value: 8.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958672613 365 EQLRSELERQTDrLEKELASQQEKRALEKEMIKKEVTREREEAEAKMLILSQNIAKLEAEIEKITREKTSAVSQLEEVQN 444
Cdd:pfam05262 184 EALREDNEKGVN-FRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPK 262
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958672613 445 QLASQEMDVTKvcgemRFQLNKtkmeKDEAEKEHKEYKAKSQKDLEMKDQEIEKLRLELSESTQQVEQEQQKAARARQE 523
Cdd:pfam05262 263 PADTSSPKEDK-----QVAENQ----KREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREP 332
|
|
| |
