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homeobox protein Meis1 isoform X6 [Rattus norvegicus]
homeobox domain-containing protein( domain architecture ID 10531334)
homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
Homeobox_KN | pfam05920 | Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ... |
128-166 | 2.49e-21 | |||
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified. : Pssm-ID: 428673 Cd Length: 39 Bit Score: 84.49 E-value: 2.49e-21
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PABP-1234 super family | cl31127 | polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
163-286 | 3.82e-04 | |||
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range. The actual alignment was detected with superfamily member TIGR01628: Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 41.72 E-value: 3.82e-04
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Name | Accession | Description | Interval | E-value | |||
Homeobox_KN | pfam05920 | Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ... |
128-166 | 2.49e-21 | |||
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified. Pssm-ID: 428673 Cd Length: 39 Bit Score: 84.49 E-value: 2.49e-21
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homeodomain | cd00086 | Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ... |
113-166 | 4.26e-13 | |||
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner. Pssm-ID: 238039 [Multi-domain] Cd Length: 59 Bit Score: 63.03 E-value: 4.26e-13
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HOX | smart00389 | Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ... |
113-166 | 1.50e-12 | |||
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes Pssm-ID: 197696 [Multi-domain] Cd Length: 57 Bit Score: 61.50 E-value: 1.50e-12
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PABP-1234 | TIGR01628 | polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
163-286 | 3.82e-04 | |||
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range. Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 41.72 E-value: 3.82e-04
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Name | Accession | Description | Interval | E-value | |||
Homeobox_KN | pfam05920 | Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ... |
128-166 | 2.49e-21 | |||
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified. Pssm-ID: 428673 Cd Length: 39 Bit Score: 84.49 E-value: 2.49e-21
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homeodomain | cd00086 | Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ... |
113-166 | 4.26e-13 | |||
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner. Pssm-ID: 238039 [Multi-domain] Cd Length: 59 Bit Score: 63.03 E-value: 4.26e-13
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HOX | smart00389 | Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ... |
113-166 | 1.50e-12 | |||
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes Pssm-ID: 197696 [Multi-domain] Cd Length: 57 Bit Score: 61.50 E-value: 1.50e-12
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Homeodomain | pfam00046 | Homeodomain; |
128-166 | 6.91e-06 | |||
Homeodomain; Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 42.87 E-value: 6.91e-06
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PABP-1234 | TIGR01628 | polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
163-286 | 3.82e-04 | |||
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range. Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 41.72 E-value: 3.82e-04
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Blast search parameters | ||||
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