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Conserved domains on  [gi|1958677300|ref|XP_038948389|]
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vomeronasal 2 receptor, 71 isoform X3 [Rattus norvegicus]

Protein Classification

vomeronasal type-2 receptor( domain architecture ID 11659857)

vomeronasal type-2 receptor is a member of the class C family of seven-transmembrane G protein-coupled receptors and most likely involved with detecting protein pheromones for social and sexual cues between members of the same species

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
7tmC_V2R_pheromone cd15283
vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G ...
506-757 1.03e-132

vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors; This group represents vomeronasal type-2 pheromone receptors (V2Rs). Members of the V2R family of vomeronasal GPCRs are involved in detecting protein pheromones for social and sexual cues between the same species. V2Rs and G-alpha(o) protein are coexpressed in the basal layer of the vomeronasal organ (VNO), which is the sensory organ of the accessory olfactory system present in amphibians, reptiles, and non-primate mammals such as mice and rodents, but it is non-functional or absent in humans, apes, and monkeys. On the other hand, members of the V1R receptor family and G-alpha(i2) protein are coexpressed in the apical neurons of the VNO. Activation of V1R or V2R causes activation of phospholipase pathway, producing the second messengers diacylglycerol (DAG) and IP3. However, in contrast to V1Rs, V2Rs contain the long N-terminal extracellular domain, which is believed to bind pheromones.


:

Pssm-ID: 320410 [Multi-domain]  Cd Length: 252  Bit Score: 393.57  E-value: 1.03e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 506 PLGMALGCTALCFSTLTVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTV 585
Cdd:cd15283     1 PLGIALTVLSLLGSVLTAAVLVVFIKHRDTPIVKANNSELSYLLLLSLKLCFLCSLLFIGQPSTWTCMLRQTAFGISFVL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 586 AISTVLAKTITVVMAFKISTPGNRMKGMLTSGAPNLVIPICTLIQLVLCGIWLGTSPPFIDRDIQSEPGKTIVICNKGSI 665
Cdd:cd15283    81 CISCILAKTIVVVAAFKATRPGSNIMKWFGPGQQRAIIFICTLVQVVICAIWLATSPPFPDKNMHSEHGKIILECNEGSV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 666 FAFHFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVVVEVFSILASSAGLLG 745
Cdd:cd15283   161 VAFYCVLGYIGLLALVSFLLAFLARKLPDNFNEAKFITFSMLVFCAVWVAFVPAYISSPGKYMVAVEIFAILASSAGLLG 240
                         250
                  ....*....|..
gi 1958677300 746 CIFVPKCYVILV 757
Cdd:cd15283   241 CIFAPKCYIILL 252
Periplasmic_Binding_Protein_type1 super family cl10011
Type 1 periplasmic binding fold superfamily; Type 1 periplasmic binding fold superfamily. This ...
45-439 9.41e-132

Type 1 periplasmic binding fold superfamily; Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins, the ligands are monosaccharides, including lactose, ribose, fructose, xylose, arabinose, galactose/glucose and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The core structures of periplasmic binding proteins are classified into two types, and they differ in number and order of beta strands: type 1 has six beta strands while type 2 has five beta strands per sub-domain. These two structural folds are thought to be distantly related via a common ancestor. Notably, while the N-terminal LIVBP-like domain of iGluRs belongs to the type 1 periplasmic-binding fold protein superfamily, the glutamate-binding domain of the iGluR is structurally similar to the type 2 periplasmic-binding fold.


The actual alignment was detected with superfamily member cd06365:

Pssm-ID: 471960 [Multi-domain]  Cd Length: 464  Bit Score: 399.33  E-value: 9.41e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300  45 DCGFVLITYEGPIEENF---YNNVINFRIPARRYEVFLVLLFATDEINRNPYLLPNMSFMFsRIvgmcEDTLGSLERKyt 121
Cdd:cd06365     3 GGVFPIHTFSEGKKKDFkepPSPLLCFRFSIKYYQHLLAFLFAIEEINKNPDLLPNITLGF-HI----YDSCSSERLA-- 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 122 pQSNSWKFI--------NYNCGIQEVCDVQLTGPSWTTSLKLAIN---SRNPKVFFGPFNPNLSDHDQFPYVYQVATEDT 190
Cdd:cd06365    76 -LESSLSILsgnsepipNYSCREQRKLVAFIGDLSSSTSVAMARIlglYKYPQISYGAFDPLLSDKVQFPSFYRTVPSDT 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 191 CLSHAMVSLMLHFRWTWIGLVITDDDQGIQLLTDLREEMERHGMCLAFVNMIPETMQIYMtkAKIYDNQIMTSSAKVVII 270
Cdd:cd06365   155 SQSLAIVQLLKHFGWTWVGLIISDDDYGEQFSQDLKKEMEKNGICVAFVEKIPTNSSLKR--IIKYINQIIKSSANVIII 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 271 YGEMNSTLEVSFRRWAYLAAQRIWITTSQWDVITTRKDFSLDFFHGTFTFAHHNVELPKFRHFMQTMNTSKYPVDISQSM 350
Cdd:cd06365   233 YGDTDSLLELLFRLWEQLVTGKVWITTSQWDISTLPFEFYLNLFNGTLGFSQHSGEIPGFKEFLQSVHPSKYPEDIFLKT 312
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 351 LGWNYFNCSISKNSISKIDHFTLNNTLEWLAQHKFDMFLSEEGYNLYNAVYAVAHTYHELIL-QVESQKMAEPKGLFTDC 429
Cdd:cd06365   313 LWESYFNCKWPDQNCKSLQNCCGNESLETLDVHSFDMTMSRLSYNVYNAVYAVAHALHEMLLcQPKTGPGNCSDRRNFQP 392
                         410
                  ....*....|
gi 1958677300 430 QQIPTSMCSV 439
Cdd:cd06365   393 WQLHHYLKKV 402
NCD3G pfam07562
Nine Cysteines Domain of family 3 GPCR; This conserved sequence contains several ...
433-486 1.07e-17

Nine Cysteines Domain of family 3 GPCR; This conserved sequence contains several highly-conserved Cys residues that are predicted to form disulphide bridges. It is predicted to lie outside the cell membrane, tethered to the pfam00003 in several receptor proteins.


:

Pssm-ID: 462210  Cd Length: 53  Bit Score: 77.29  E-value: 1.07e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1958677300 433 PTSMCSVACIAGFRKIHQKQVTHCCFDCAHCPENEVSNeTDMEQCVRCPDDKYA 486
Cdd:pfam07562   1 PSSVCSESCPPGQRKSQQGGAPVCCWDCVPCPEGEISN-TDSDTCKKCPEGQWP 53
 
Name Accession Description Interval E-value
7tmC_V2R_pheromone cd15283
vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G ...
506-757 1.03e-132

vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors; This group represents vomeronasal type-2 pheromone receptors (V2Rs). Members of the V2R family of vomeronasal GPCRs are involved in detecting protein pheromones for social and sexual cues between the same species. V2Rs and G-alpha(o) protein are coexpressed in the basal layer of the vomeronasal organ (VNO), which is the sensory organ of the accessory olfactory system present in amphibians, reptiles, and non-primate mammals such as mice and rodents, but it is non-functional or absent in humans, apes, and monkeys. On the other hand, members of the V1R receptor family and G-alpha(i2) protein are coexpressed in the apical neurons of the VNO. Activation of V1R or V2R causes activation of phospholipase pathway, producing the second messengers diacylglycerol (DAG) and IP3. However, in contrast to V1Rs, V2Rs contain the long N-terminal extracellular domain, which is believed to bind pheromones.


Pssm-ID: 320410 [Multi-domain]  Cd Length: 252  Bit Score: 393.57  E-value: 1.03e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 506 PLGMALGCTALCFSTLTVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTV 585
Cdd:cd15283     1 PLGIALTVLSLLGSVLTAAVLVVFIKHRDTPIVKANNSELSYLLLLSLKLCFLCSLLFIGQPSTWTCMLRQTAFGISFVL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 586 AISTVLAKTITVVMAFKISTPGNRMKGMLTSGAPNLVIPICTLIQLVLCGIWLGTSPPFIDRDIQSEPGKTIVICNKGSI 665
Cdd:cd15283    81 CISCILAKTIVVVAAFKATRPGSNIMKWFGPGQQRAIIFICTLVQVVICAIWLATSPPFPDKNMHSEHGKIILECNEGSV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 666 FAFHFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVVVEVFSILASSAGLLG 745
Cdd:cd15283   161 VAFYCVLGYIGLLALVSFLLAFLARKLPDNFNEAKFITFSMLVFCAVWVAFVPAYISSPGKYMVAVEIFAILASSAGLLG 240
                         250
                  ....*....|..
gi 1958677300 746 CIFVPKCYVILV 757
Cdd:cd15283   241 CIFAPKCYIILL 252
PBP1_pheromone_receptor cd06365
Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within ...
45-439 9.41e-132

Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.


Pssm-ID: 380588 [Multi-domain]  Cd Length: 464  Bit Score: 399.33  E-value: 9.41e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300  45 DCGFVLITYEGPIEENF---YNNVINFRIPARRYEVFLVLLFATDEINRNPYLLPNMSFMFsRIvgmcEDTLGSLERKyt 121
Cdd:cd06365     3 GGVFPIHTFSEGKKKDFkepPSPLLCFRFSIKYYQHLLAFLFAIEEINKNPDLLPNITLGF-HI----YDSCSSERLA-- 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 122 pQSNSWKFI--------NYNCGIQEVCDVQLTGPSWTTSLKLAIN---SRNPKVFFGPFNPNLSDHDQFPYVYQVATEDT 190
Cdd:cd06365    76 -LESSLSILsgnsepipNYSCREQRKLVAFIGDLSSSTSVAMARIlglYKYPQISYGAFDPLLSDKVQFPSFYRTVPSDT 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 191 CLSHAMVSLMLHFRWTWIGLVITDDDQGIQLLTDLREEMERHGMCLAFVNMIPETMQIYMtkAKIYDNQIMTSSAKVVII 270
Cdd:cd06365   155 SQSLAIVQLLKHFGWTWVGLIISDDDYGEQFSQDLKKEMEKNGICVAFVEKIPTNSSLKR--IIKYINQIIKSSANVIII 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 271 YGEMNSTLEVSFRRWAYLAAQRIWITTSQWDVITTRKDFSLDFFHGTFTFAHHNVELPKFRHFMQTMNTSKYPVDISQSM 350
Cdd:cd06365   233 YGDTDSLLELLFRLWEQLVTGKVWITTSQWDISTLPFEFYLNLFNGTLGFSQHSGEIPGFKEFLQSVHPSKYPEDIFLKT 312
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 351 LGWNYFNCSISKNSISKIDHFTLNNTLEWLAQHKFDMFLSEEGYNLYNAVYAVAHTYHELIL-QVESQKMAEPKGLFTDC 429
Cdd:cd06365   313 LWESYFNCKWPDQNCKSLQNCCGNESLETLDVHSFDMTMSRLSYNVYNAVYAVAHALHEMLLcQPKTGPGNCSDRRNFQP 392
                         410
                  ....*....|
gi 1958677300 430 QQIPTSMCSV 439
Cdd:cd06365   393 WQLHHYLKKV 402
7tm_3 pfam00003
7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane ...
501-751 1.22e-68

7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane regions that forms the C-terminus of some subclass 3 G-coupled-protein receptors. It is often associated with a downstream cysteine-rich linker domain, NCD3G pfam07562, which is the human sweet-taste receptor, and the N-terminal domain, ANF_receptor pfam01094. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness.


Pssm-ID: 459626 [Multi-domain]  Cd Length: 247  Bit Score: 226.39  E-value: 1.22e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 501 LAYEDPLGMALGCTALCFSTLTVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNhITCILQQTTFG 580
Cdd:pfam00003   1 LDLSAPWGIVLEALAALGILLTLVLLVVFLLHRKTPIVKASNRSLSFLLLLGLLLLFLLAFLFIGKPT-VTCALRRFLFG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 581 VFFTVAISTVLAKTITVVMAFKISTPGNRMKGMLtsgapnLVIPICTLIQLVLCGIWLGTsPPFIDRDIQSEpGKTIVIC 660
Cdd:pfam00003  80 VGFTLCFSCLLAKTFRLVLIFRRRKPGPRGWQLL------LLALGLLLVQVIILTEWLID-PPFPEKDNLSE-GKIILEC 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 661 NKGSIFAF-HFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVY-HSTKGKVM---VVVEVFS 735
Cdd:pfam00003 152 EGSTSIAFlDFVLAYVGLLLLAGFLLAFKTRKLPDNFNEAKFITFSMLLSVLIWVAFIPMYlYGNKGKGTwdpVALAIFA 231
                         250
                  ....*....|....*.
gi 1958677300 736 ILASSAGLLGCIFVPK 751
Cdd:pfam00003 232 ILASGWVLLGLYFIPK 247
ANF_receptor pfam01094
Receptor family ligand binding region; This family includes extracellular ligand binding ...
77-410 2.35e-24

Receptor family ligand binding region; This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure.


Pssm-ID: 460062 [Multi-domain]  Cd Length: 347  Bit Score: 105.16  E-value: 2.35e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300  77 VFLVLLFATDEINRNPYLLPNMSFMFSRIVGMCEDTLGSLERKYTPQSNSWKFInyncgiqevcdvqltGPSWTTSLKLA 156
Cdd:pfam01094   2 VLLAVRLAVEDINADPGLLPGTKLEYIILDTCCDPSLALAAALDLLKGEVVAII---------------GPSCSSVASAV 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 157 IN----SRNPKVFFGPFNPNLSDHDQFPYVYQVATEDTCLSHAMVSLMLHFRWTWIGLVITDDDQGIQLLTDLREEMERH 232
Cdd:pfam01094  67 ASlaneWKVPLISYGSTSPALSDLNRYPTFLRTTPSDTSQADAIVDILKHFGWKRVALIYSDDDYGESGLQALEDALRER 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 233 GMCLAFVNMIPETMQIymtkAKIYDN--QIMTSSAKVVII--YGEMNSTLEVSFRRWAYLAAQRIWITTSQW-DVITTRK 307
Cdd:pfam01094 147 GIRVAYKAVIPPAQDD----DEIARKllKEVKSRARVIVVccSSETARRLLKAARELGMMGEGYVWIATDGLtTSLVILN 222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 308 DFSLDFFHGTFTFAHHNVELPKFRHFMQTMNTSkypvdisqsmlgwnyfncsiSKNSISKIDHFTLNNTLEwlaqhkfdm 387
Cdd:pfam01094 223 PSTLEAAGGVLGFRLHPPDSPEFSEFFWEKLSD--------------------EKELYENLGGLPVSYGAL--------- 273
                         330       340
                  ....*....|....*....|...
gi 1958677300 388 flseegynLYNAVYAVAHTYHEL 410
Cdd:pfam01094 274 --------AYDAVYLLAHALHNL 288
NCD3G pfam07562
Nine Cysteines Domain of family 3 GPCR; This conserved sequence contains several ...
433-486 1.07e-17

Nine Cysteines Domain of family 3 GPCR; This conserved sequence contains several highly-conserved Cys residues that are predicted to form disulphide bridges. It is predicted to lie outside the cell membrane, tethered to the pfam00003 in several receptor proteins.


Pssm-ID: 462210  Cd Length: 53  Bit Score: 77.29  E-value: 1.07e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1958677300 433 PTSMCSVACIAGFRKIHQKQVTHCCFDCAHCPENEVSNeTDMEQCVRCPDDKYA 486
Cdd:pfam07562   1 PSSVCSESCPPGQRKSQQGGAPVCCWDCVPCPEGEISN-TDSDTCKKCPEGQWP 53
 
Name Accession Description Interval E-value
7tmC_V2R_pheromone cd15283
vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G ...
506-757 1.03e-132

vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors; This group represents vomeronasal type-2 pheromone receptors (V2Rs). Members of the V2R family of vomeronasal GPCRs are involved in detecting protein pheromones for social and sexual cues between the same species. V2Rs and G-alpha(o) protein are coexpressed in the basal layer of the vomeronasal organ (VNO), which is the sensory organ of the accessory olfactory system present in amphibians, reptiles, and non-primate mammals such as mice and rodents, but it is non-functional or absent in humans, apes, and monkeys. On the other hand, members of the V1R receptor family and G-alpha(i2) protein are coexpressed in the apical neurons of the VNO. Activation of V1R or V2R causes activation of phospholipase pathway, producing the second messengers diacylglycerol (DAG) and IP3. However, in contrast to V1Rs, V2Rs contain the long N-terminal extracellular domain, which is believed to bind pheromones.


Pssm-ID: 320410 [Multi-domain]  Cd Length: 252  Bit Score: 393.57  E-value: 1.03e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 506 PLGMALGCTALCFSTLTVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTV 585
Cdd:cd15283     1 PLGIALTVLSLLGSVLTAAVLVVFIKHRDTPIVKANNSELSYLLLLSLKLCFLCSLLFIGQPSTWTCMLRQTAFGISFVL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 586 AISTVLAKTITVVMAFKISTPGNRMKGMLTSGAPNLVIPICTLIQLVLCGIWLGTSPPFIDRDIQSEPGKTIVICNKGSI 665
Cdd:cd15283    81 CISCILAKTIVVVAAFKATRPGSNIMKWFGPGQQRAIIFICTLVQVVICAIWLATSPPFPDKNMHSEHGKIILECNEGSV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 666 FAFHFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVVVEVFSILASSAGLLG 745
Cdd:cd15283   161 VAFYCVLGYIGLLALVSFLLAFLARKLPDNFNEAKFITFSMLVFCAVWVAFVPAYISSPGKYMVAVEIFAILASSAGLLG 240
                         250
                  ....*....|..
gi 1958677300 746 CIFVPKCYVILV 757
Cdd:cd15283   241 CIFAPKCYIILL 252
PBP1_pheromone_receptor cd06365
Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within ...
45-439 9.41e-132

Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.


Pssm-ID: 380588 [Multi-domain]  Cd Length: 464  Bit Score: 399.33  E-value: 9.41e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300  45 DCGFVLITYEGPIEENF---YNNVINFRIPARRYEVFLVLLFATDEINRNPYLLPNMSFMFsRIvgmcEDTLGSLERKyt 121
Cdd:cd06365     3 GGVFPIHTFSEGKKKDFkepPSPLLCFRFSIKYYQHLLAFLFAIEEINKNPDLLPNITLGF-HI----YDSCSSERLA-- 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 122 pQSNSWKFI--------NYNCGIQEVCDVQLTGPSWTTSLKLAIN---SRNPKVFFGPFNPNLSDHDQFPYVYQVATEDT 190
Cdd:cd06365    76 -LESSLSILsgnsepipNYSCREQRKLVAFIGDLSSSTSVAMARIlglYKYPQISYGAFDPLLSDKVQFPSFYRTVPSDT 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 191 CLSHAMVSLMLHFRWTWIGLVITDDDQGIQLLTDLREEMERHGMCLAFVNMIPETMQIYMtkAKIYDNQIMTSSAKVVII 270
Cdd:cd06365   155 SQSLAIVQLLKHFGWTWVGLIISDDDYGEQFSQDLKKEMEKNGICVAFVEKIPTNSSLKR--IIKYINQIIKSSANVIII 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 271 YGEMNSTLEVSFRRWAYLAAQRIWITTSQWDVITTRKDFSLDFFHGTFTFAHHNVELPKFRHFMQTMNTSKYPVDISQSM 350
Cdd:cd06365   233 YGDTDSLLELLFRLWEQLVTGKVWITTSQWDISTLPFEFYLNLFNGTLGFSQHSGEIPGFKEFLQSVHPSKYPEDIFLKT 312
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 351 LGWNYFNCSISKNSISKIDHFTLNNTLEWLAQHKFDMFLSEEGYNLYNAVYAVAHTYHELIL-QVESQKMAEPKGLFTDC 429
Cdd:cd06365   313 LWESYFNCKWPDQNCKSLQNCCGNESLETLDVHSFDMTMSRLSYNVYNAVYAVAHALHEMLLcQPKTGPGNCSDRRNFQP 392
                         410
                  ....*....|
gi 1958677300 430 QQIPTSMCSV 439
Cdd:cd06365   393 WQLHHYLKKV 402
7tmC_V2R_AA_sensing_receptor-like cd15044
vomeronasal type-2 pheromone receptors, amino acid-sensing receptors and closely related ...
506-756 5.72e-82

vomeronasal type-2 pheromone receptors, amino acid-sensing receptors and closely related proteins; member of the class C family of seven-transmembrane G protein-coupled receptors; This group is composed of vomeronasal type-2 pheromone receptors (V2Rs), a subgroup of broad-spectrum amino-acid sensing receptors including calcium-sensing receptor (CaSR) and GPRC6A, as well as their closely related proteins. Members of the V2R family of vomeronasal GPCRs are involved in detecting protein pheromones for social and sexual cues between the same species. V2Rs and G-alpha(o) protein are co-expressed in the basal layer of the vomeronasal organ (VNO), which is the sensory organ of the accessory olfactory system present in amphibians, reptiles, and non-primate mammals such as mice and rodents, but it is non-functional or absent in humans, apes, and monkeys. On the other hand, members of the V1R receptor family and G-alpha(i2) protein are co-expressed in the apical neurons of the VNO. Activation of V1R or V2R causes activation of phospholipase pathway, producing the second messengers diacylglycerol (DAG) and IP3. However, in contrast to V1Rs, V2Rs contain the long N-terminal extracellular domain, which is believed to bind pheromones. CaSR is a widely expressed GPCR that is involved in sensing small changes in extracellular levels of calcium ion to maintain a constant level of the extracellular calcium via modulating the synthesis and secretion of calcium regulating hormones, such as parathyroid hormone (PTH), in order to regulate Ca(2+)transport into or out of the extracellular fluid via kidney, intestine, and/or bone. For instance, when Ca2+ is high, CaSR downregulates PTH synthesis and secretion, leading to an increase in renal Ca2+ excretion, a decrease in intestinal Ca2+ absorption, and a reduction in release of skeletal Ca2+. GRPC6A (GPCR, class C, group 6, subtype A) is a widely expressed amino acid-sensing GPCR that is most closely related to CaSR. GPRC6A is most potently activated by the basic amino acids L-arginine, L-lysine, and L-ornithine and less potently by small aliphatic amino acids. Moreover, the receptor can be either activated or modulated by divalent cations such as Ca2+. GPRC6A is expressed in the testis, but not the ovary and specifically also binds to the osteoblast-derived hormone osteocalcin (OCN), which regulates testosterone production by the testis and male fertility independently of the hypothalamic-pituitary axis. Furthermore, GPRC6A knockout studies suggest that GRPC6A is involved in regulation of bone metabolism, male reproduction, energy homeostasis, glucose metabolism, and in activation of inflammation response, as well as prostate cancer growth and progression, among others.


Pssm-ID: 320172 [Multi-domain]  Cd Length: 251  Bit Score: 262.02  E-value: 5.72e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 506 PLGMALGCTALCFSTLTVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTV 585
Cdd:cd15044     1 PLGILLVILSILGIIFVLVVGGVFVRYRNTPIVKANNRELSYLILLSLFLCFSSSLFFIGEPQDWTCKLRQTMFGVSFTL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 586 AISTVLAKTITVVMAFKISTPGNRMKGMLTSgAPNLVIPICTLIQLVLCGIWLGTSPPFIDRDIQSEPGKTIVICNKGSI 665
Cdd:cd15044    81 CISCILTKTLKVLLAFSADKPLTQKFLMCLY-LPILIVFTCTGIQVVICTVWLIFAPPTVEVNVSPLPRVIILECNEGSI 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 666 FAFHFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVVVEVFSILASSAGLLG 745
Cdd:cd15044   160 LAFGTMLGYIAFLAFLCFLFAFKARKLPDNYNEAKFITFGMLVFFIVWISFVPAYLSTKGKFVVAVEIIAILASSYGLLG 239
                         250
                  ....*....|.
gi 1958677300 746 CIFVPKCYVIL 756
Cdd:cd15044   240 CIFLPKCYVIL 250
7tm_3 pfam00003
7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane ...
501-751 1.22e-68

7 transmembrane sweet-taste receptor of 3 GCPR; This is a domain of seven transmembrane regions that forms the C-terminus of some subclass 3 G-coupled-protein receptors. It is often associated with a downstream cysteine-rich linker domain, NCD3G pfam07562, which is the human sweet-taste receptor, and the N-terminal domain, ANF_receptor pfam01094. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness.


Pssm-ID: 459626 [Multi-domain]  Cd Length: 247  Bit Score: 226.39  E-value: 1.22e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 501 LAYEDPLGMALGCTALCFSTLTVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNhITCILQQTTFG 580
Cdd:pfam00003   1 LDLSAPWGIVLEALAALGILLTLVLLVVFLLHRKTPIVKASNRSLSFLLLLGLLLLFLLAFLFIGKPT-VTCALRRFLFG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 581 VFFTVAISTVLAKTITVVMAFKISTPGNRMKGMLtsgapnLVIPICTLIQLVLCGIWLGTsPPFIDRDIQSEpGKTIVIC 660
Cdd:pfam00003  80 VGFTLCFSCLLAKTFRLVLIFRRRKPGPRGWQLL------LLALGLLLVQVIILTEWLID-PPFPEKDNLSE-GKIILEC 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 661 NKGSIFAF-HFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVY-HSTKGKVM---VVVEVFS 735
Cdd:pfam00003 152 EGSTSIAFlDFVLAYVGLLLLAGFLLAFKTRKLPDNFNEAKFITFSMLLSVLIWVAFIPMYlYGNKGKGTwdpVALAIFA 231
                         250
                  ....*....|....*.
gi 1958677300 736 ILASSAGLLGCIFVPK 751
Cdd:pfam00003 232 ILASGWVLLGLYFIPK 247
7tmC_V2R-like cd15280
vomeronasal type-2 receptor-like proteins, member of the class C family of seven-transmembrane ...
506-758 1.97e-61

vomeronasal type-2 receptor-like proteins, member of the class C family of seven-transmembrane G protein-coupled receptors; This group represents vomeronasal type-2 receptor-like proteins that are closely related to the V2R family of vomeronasal GPCRs. Members of the V2R family of vomeronasal GPCRs are involved in detecting protein pheromones for social and sexual cues between the same species. V2Rs and G-alpha(o) protein are coexpressed in the basal layer of the vomeronasal organ (VNO), which is the sensory organ of the accessory olfactory system present in amphibians, reptiles, and non-primate mammals such as mice and rodents, but it is non-functional or absent in humans, apes, and monkeys. On the other hand, members of the V1R receptor family and G-alpha(i2) protein are co-expressed in the apical neurons of the VNO. Activation of V1R or V2R causes activation of phospholipase pathway, generating the secondary messengers diacylglycerol (DAG) and IP3. However, in contrast to V1Rs, V2Rs contain the long N-terminal extracellular domain, which is believed to bind pheromones. Human V2R1-like protein, also known as putative calcium-sensing receptor-like 1 (CASRL1), is not included here because it is a nonfunctional pseudogene.


Pssm-ID: 320407 [Multi-domain]  Cd Length: 253  Bit Score: 207.33  E-value: 1.97e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 506 PLGMALGCTALCFSTLTVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTV 585
Cdd:cd15280     1 ALGITLIALSIFGALVVLAVTVVYIMHRHTPLVKANDRELSFLIQMSLVITFLTSILFIGKPENWSCMARQITLALGFSL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 586 AISTVLAKTITVVMAFKISTPGNRMKGMlTSGAPNLVIPICTLIQLVLCGIWLGTSPPFIDRDIQSEPGKTIVICNKGSI 665
Cdd:cd15280    81 CLSSILGKTISLFLRYRASKSETRLDSM-HPIYQKIIVLICVLIEVGICTAYLILEPPRMYKNTEVQNVKIIFECNEGSI 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 666 FAFHFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVVVEVFSILASSAGLLG 745
Cdd:cd15280   160 EFLCSIFGFDVFLALLCFLTAFVARKLPDNFNEGKFITFGMLVFFIVWISFVPAYLSTRGKFKVAVEIFAILASSFGLLG 239
                         250
                  ....*....|...
gi 1958677300 746 CIFVPKCYVILVR 758
Cdd:cd15280   240 CIFVPKCYIILLK 252
7tmC_CaSR cd15282
calcium-sensing receptor, member of the class C of seven-transmembrane G protein-coupled ...
506-756 1.73e-54

calcium-sensing receptor, member of the class C of seven-transmembrane G protein-coupled receptors; CaSR is a widely expressed GPCR that is involved in sensing small changes in extracellular levels of calcium ion to maintain a constant level of the extracellular calcium via modulating the synthesis and secretion of calcium regulating hormones, such as parathyroid hormone (PTH), in order to regulate Ca(2+)transport into or out of the extracellular fluid via kidney, intestine, and/or bone. For instance, when Ca2+ is high, CaSR downregulates PTH synthesis and secretion, leading to an increase in renal Ca2+ excretion, a decrease in intestinal Ca2+ absorption, and a reduction in release of skeletal Ca2+. CaSR is coupled to both G(q/11)-dependent activation of phospholipase and, subsequently, intracellular calcium mobilization and protein kinase C activation as well as G(i/o)-dependent inhibition of adenylate cyclase leading to inhibition of cAMP formation. CaSR is closely related to GRPC6A (GPCR, class C, group 6, subtype A), which is an amino acid-sensing GPCR that is most potently activated by the basic amino acids L-arginine, L-lysine, and L-ornithine. These receptors contain a large extracellular Venus flytrap-like domain in the N-terminus, cysteine-rich domain (CRD), and seven-transmembrane (7TM) domain, which are characteristics of the class C GPCRs. The Venus flytrap-like domain shares strong sequence homology to bacterial periplasmic binding proteins and possess the orthosteric amino acid and calcium binding sites for members of the class C, including CaSR, GABA-B1, GPRC6A, mGlu, and TASR1 receptors.


Pssm-ID: 320409 [Multi-domain]  Cd Length: 252  Bit Score: 188.24  E-value: 1.73e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 506 PLGMALGCTALCFSTLTVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTV 585
Cdd:cd15282     1 PFGIALTLFAVLGIFLTAFVLGVFIKFRNTPIVKATNRELSYLLLFSLICCFSSSLIFIGEPQDWTCRLRQPAFGISFVL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 586 AISTVLAKTITVVMAFKISTPGNRMKGMLTSGAPNLVIPICTLIQLVLCGIWLGTSPPFIDRDIQSEPGKTIVICNKGSI 665
Cdd:cd15282    81 CISCILVKTNRVLLVFEAKIPTSLHRKWWGLNLQFLLVFLCTFVQIVICVIWLYTAPPSSYRNHELEDEIIFITCNEGSL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 666 FAFHFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVVVEVFSILASSAGLLG 745
Cdd:cd15282   161 MALGFLIGYTCLLAAICFFFAFKSRKLPENFNEAKFITFSMLIFFIVWISFIPAYASTYGKFVSAVEVIAILASSFGLLA 240
                         250
                  ....*....|.
gi 1958677300 746 CIFVPKCYVIL 756
Cdd:cd15282   241 CIFFNKVYIIL 251
7tm_classC_mGluR-like cd13953
metabotropic glutamate receptor-like class C family of seven-transmembrane G protein-coupled ...
506-756 1.62e-52

metabotropic glutamate receptor-like class C family of seven-transmembrane G protein-coupled receptors superfamily; The class C GPCRs consist of glutamate receptors (mGluR1-8), the extracellular calcium-sensing receptors (caSR), the gamma-amino-butyric acid type B receptors (GABA-B), the vomeronasal type-2 pheromone receptors (V2R), the type 1 taste receptors (TAS1R), and the promiscuous L-alpha-amino acid receptor (GPRC6A), as well as several orphan receptors. Structurally, these receptors are typically composed of a large extracellular domain containing a Venus flytrap module which possesses the orthosteric agonist-binding site, a cysteine-rich domain (CRD) with the exception of GABA-B receptors, and the seven-transmembrane domains responsible for G protein activation. Moreover, the Venus flytrap module shows high structural homology with bacterial periplasmic amino acid-binding proteins, which serve as primary receptors in transport of a variety of soluble substrates such as amino acids and polysaccharides, among many others. The class C GPCRs exist as either homo- or heterodimers, which are essential for their function. The GABA-B1 and GABA-B2 receptors form a heterodimer via interactions between the N-terminal Venus flytrap modules and the C-terminal coiled-coiled domains. On the other hand, heterodimeric CaSRs and Tas1Rs and homodimeric mGluRs utilize Venus flytrap interactions and intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD), which can also acts as a molecular link to mediate the signal between the Venus flytrap and the 7TMs. Furthermore, members of the class C GPCRs bind a variety of endogenous ligands, ranging from amino acids, ions, to pheromones and sugar molecules, and play important roles in many physiological processes such as synaptic transmission, calcium homeostasis, and the sensation of sweet and umami tastes.


Pssm-ID: 320091 [Multi-domain]  Cd Length: 251  Bit Score: 182.82  E-value: 1.62e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 506 PLGMALGCTALCFSTLTVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTV 585
Cdd:cd13953     1 PLAIVLLVLAALGLLLTIFIWVVFIRYRNTPVVKASNRELSYLLLFGILLCFLLAFLFLLPPSDVLCGLRRFLFGLSFTL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 586 AISTVLAKTITVVMAFKISTPGNRMKGMLTSGAPNLVIPICTLIQLVLCGIWLGTSPPFIDRDIQSEpGKTIVICNKGSI 665
Cdd:cd13953    81 VFSTLLVKTNRIYRIFKSGLRSSLRPKLLSNKSQLLLVLFLLLVQVAILIVWLILDPPKVEKVIDSD-NKVVELCCSTGN 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 666 FAFHFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVVVEVFSILASSAGLLG 745
Cdd:cd13953   160 IGLILSLVYNILLLLICTYLAFKTRKLPDNFNEARYIGFSSLLSLVIWIAFIPTYFTTSGPYRDAILSFGLLLNATVLLL 239
                         250
                  ....*....|.
gi 1958677300 746 CIFVPKCYVIL 756
Cdd:cd13953   240 CLFLPKIYIIL 250
7tmC_GPRC6A cd15281
class C of seven-transmembrane G protein-coupled receptors, subtype 6A; GRPC6A (GPCR, class C, ...
516-756 1.08e-48

class C of seven-transmembrane G protein-coupled receptors, subtype 6A; GRPC6A (GPCR, class C, group 6, subtype A) is a widely expressed amino acid-sensing GPCR that is most closely related to CaSR. GPRC6A is most potently activated by the basic amino acids L-arginine, L-lysine, and L-ornithine and less potently by small aliphatic amino acids. Moreover, the receptor can be either activated or modulated by divalent cations such as Ca2+ and Mg2+. GPRC6A is expressed in the testis, but not the ovary and specifically also binds to the osteoblast-derived hormone osteocalcin (OCN), which regulates testosterone production by the testis and male fertility independently of the hypothalamic-pituitary axis. Furthermore, GPRC6A knockout studies suggest that GRPC6A is involved in regulation of bone metabolism, male reproduction, energy homeostasis, glucose metabolism, and in activation of inflammation response, as well as prostate cancer growth and progression, among others. GPRC6A has been suggested to couple to the Gq subtype of G proteins, leading to IP3 production and intracellular calcium mobilization. GPRC6A contains a large extracellular Venus flytrap-like domain in the N-terminus, cysteine-rich domain (CRD), and seven-transmembrane (7TM) domain, which are characteristics of the class C GPCRs. The Venus flytrap-like domain shares strong sequence homology to bacterial periplasmic binding proteins and possess the orthosteric amino acid and calcium binding sites for members of the class C, including CaSR, GABA-B, GPRC6A, mGlu, and TAS1R receptors.


Pssm-ID: 320408  Cd Length: 249  Bit Score: 172.27  E-value: 1.08e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 516 LCFSTLTVLILFT----FLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTVAISTVL 591
Cdd:cd15281     7 LILSALGVLLIFFisalFTKNLNTPVVKAGGGPLCYVILLSHFGSFISTVFFIGEPSDLTCKTRQTLFGISFTLCVSCIL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 592 AKTITVVMAFKISTPGNRMKGMLTSgaPNLVIPICTLIQLVLCGIWLGTSPPFIDRDIqSEPGKTIVICNKGSIFAFHFT 671
Cdd:cd15281    87 VKSLKILLAFSFDPKLQELLKCLYK--PIMIVFICTGIQVIICTVWLVFYKPFVDKNF-SLPESIILECNEGSYVAFGLM 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 672 LGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVVVEVFSILASSAGLLGCIFVPK 751
Cdd:cd15281   164 LGYIALLAFICFIFAFKGRKLPENYNEAKFITFGMLIYFIAWITFIPIYATTFGKYVPAVEMIVILISNYGILSCTFLPK 243

                  ....*
gi 1958677300 752 CYVIL 756
Cdd:cd15281   244 CYIIL 248
7tmC_TAS1R3 cd15290
type 1 taste receptor subtype 3, member of the class C of seven-transmembrane G ...
507-756 1.61e-35

type 1 taste receptor subtype 3, member of the class C of seven-transmembrane G protein-coupled receptors; This group represents TAS1R3, which is a member of the type I taste receptor (TAS1R) family that belongs to the class C of G protein-coupled receptors. The functional TAS1Rs are obligatory heterodimers built from three known members, TAS1R1-3. TAS1R1 combines with TAS1R3 to form an umami taste receptor, which is responsible for the perception of savory taste, such as the food additive mono-sodium glutamate (MSG); whereas the combination of TAS1R2-TAS1R3 forms a sweet-taste receptor for sugars and D-amino acids. On the other hand, the type II taste receptors (TAS2Rs), which belong to the class A family of GPCRs, recognize bitter tasting compounds. In the case of sweet, for example, the TAS1R2-TAS1R3 heterodimer activates phospholipase C (PLC) via alpha-gustducin, a heterodimeric G protein that is involved in perception of sweet and bitter tastes. This activation leads to generation of inositol (1, 4, 5)-trisphosphate (IP3) and diacylglycerol (DAG), and consequently increases intracellular Ca2+ mobilization and activates a cation channel, TRPM5. In contrast to the TAS1R2-TAS1R3 heterodimer, TAS1R3 alone could activate adenylate cyclase leading to cAMP formation in the absence of alpha-gustducin. Each TAS1R contains a large extracellular Venus flytrap-like domain in the N-terminus, cysteine-rich domain (CRD) and seven-transmembrane (7TM) domain, which are characteristics of the class C GPCRs. The Venus flytrap-like domain shares strong sequence homology to bacterial periplasmic binding proteins and possess the orthosteric amino acid and calcium binding sites for members of the class C, including CaSR, GABA-B1, GPRC6A, mGlu, and TAS1R receptors.


Pssm-ID: 320417 [Multi-domain]  Cd Length: 253  Bit Score: 135.19  E-value: 1.61e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 507 LGMALGCTALCFSTLTVLILFtfLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTVA 586
Cdd:cd15290     4 LGLLLLGVLLLVLQCSVGVLF--LKHRGTPLVQASGGPLSIFALLSLMGACLSLLLFLGQPSDVVCRLQQPLNALFLTVC 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 587 ISTVLAKT--ITVVMAFKISTPGnrMKGMLTSGAPNLVIPICTLIQLVLCGIWLGTSPPFIDRDIQSE-PGKTIVICNKG 663
Cdd:cd15290    82 LSTILSISlqIFLVTEFPKCAAS--HLHWLRGPGSWLVVLICCLVQAGLCGWYVQDGPSLSEYDAKMTlFVEVFLRCPVE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 664 SIFAFHFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVVVEVFSILASSAGL 743
Cdd:cd15290   160 PWLGFGLMHGFNGALALISFMCTFMAQKPLKQYNLARDITFSTLIYCVTWVIFIPIYAGLQVKLRSIAQVGFILLSNLGL 239
                         250
                  ....*....|...
gi 1958677300 744 LGCIFVPKCYVIL 756
Cdd:cd15290   240 LAAYYLPKCYLLL 252
PBP1_CaSR cd06364
ligand-binding domain of the CaSR calcium-sensing receptor, a member of the family C receptors ...
66-455 8.85e-34

ligand-binding domain of the CaSR calcium-sensing receptor, a member of the family C receptors within the G-protein coupled receptor superfamily; Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calcium metabolism. Additionally, the family C GPCRs includes at least two receptors with broad-spectrum amino acid-sensing properties: GPRC6A which recognizes basic and various aliphatic amino acids, its gold-fish homolog the 5.24 chemoreceptor, and a specific taste receptor (T1R) which responds to aliphatic, polar, charged, and branched amino acids, but not to aromatic amino acids.


Pssm-ID: 380587 [Multi-domain]  Cd Length: 473  Bit Score: 135.85  E-value: 8.85e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300  66 INFRipARRYevFLVLLFATDEINRNPYLLPNMSFMFsRIVGMCEDTLGSLErkytpqsNSWKFIN--------YNC-GI 136
Cdd:cd06364    31 FNFR--GFRW--AQTMIFAIEEINNSPDLLPNITLGY-RIYDSCATISKALR-------AALALVNgqeetnldERCsGG 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 137 QEVCDVQLTGPSwTTSLKLAInsrnpkvFFGPFNPN----------LSDHDQFPYVYQVATEDTCLSHAMVSLMLHFRWT 206
Cdd:cd06364    99 PPVAAVIGESGS-TLSIAVAR-------TLGLFYIPqvsyfascacLSDKKQFPSFLRTIPSDYYQSRALAQLVKHFGWT 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 207 WIGLVITDDDQGIQLLTDLREEMERHGMCLAFVNMIPETmqiyMTKAKIYD--NQIMTSSAKVVIIY---GEMNSTLEVS 281
Cdd:cd06364   171 WVGAIASDDDYGRNGIKAFLEEAEKLGICIAFSETIPRT----YSQEKILRivEVIKKSTAKVIVVFsseGDLEPLIKEL 246
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 282 FRR------WaylAAQRIWITTSqwdVITTRKDFslDFFHGTFTFAHHNVELPKFRHFMQTMNTSKYPVDisqSMLG--W 353
Cdd:cd06364   247 VRQnitgrqW---IASEAWITSS---LLATPEYF--PVLGGTIGFAIRRGEIPGLKEFLLRVHPSKSPSN---PFVKefW 315
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 354 NY-FNCSISKNSISKIDHFTL-----NNTLEWLaQHKF-DMFLSEEGYNLYNAVYAVAHTYHELIlqvesqkMAEP-KGL 425
Cdd:cd06364   316 EEtFNCSLSSSSKSNSSSSSRppctgSENLENV-QNPYtDVSQLRISYNVYKAVYAIAHALHDLL-------QCEPgKGP 387
                         410       420       430
                  ....*....|....*....|....*....|
gi 1958677300 426 FtdcqqiptsmcSVACIAGFRKIHQKQVTH 455
Cdd:cd06364   388 F-----------SNGSCADIKKVEPWQLLY 406
7tmC_TAS1R1 cd15289
type 1 taste receptor subtype 1, member of the class C of seven-transmembrane G ...
506-756 1.44e-32

type 1 taste receptor subtype 1, member of the class C of seven-transmembrane G protein-coupled receptors; This group represents TAS1R1, which is a member of the type I taste receptor (TAS1R) family that belongs to the class C of G protein-coupled receptors. The functional TAS1Rs are obligatory heterodimers built from three known members, TAS1R1-3. TAS1R1 combines with TAS1R3 to form an umami taste receptor, which is responsible for the perception of savory taste, such as the food additive mono-sodium glutamate (MSG); whereas the combination of TAS1R2-TAS1R3 forms a sweet-taste receptor for sugars and D-amino acids. On the other hand, the type II taste receptors (TAS2Rs), which belong to the class A family of GPCRs, recognize bitter tasting compounds. In the case of sweet, for example, the TAS1R2-TAS1R3 heterodimer activates phospholipase C (PLC) via alpha-gustducin, a heterodimeric G protein that is involved in perception of sweet and bitter tastes. This activation leads to generation of inositol (1, 4, 5)-trisphosphate (IP3) and diacylglycerol (DAG), and consequently increases intracellular Ca2+ mobilization and activates a cation channel, TRPM5. In contrast to the TAS1R2-TAS1R3 heterodimer, TAS1R3 alone could activate adenylate cyclase leading to cAMP formation in the absence of alpha-gustducin. Each TAS1R contains a large extracellular Venus flytrap-like domain in the N-terminus, cysteine-rich domain (CRD) and seven-transmembrane (7TM) domain, which are characteristics of the class C GPCRs. The Venus flytrap-like domain shares strong sequence homology to bacterial periplasmic binding proteins and possess the orthosteric amino acid and calcium binding sites for members of the class C, including CaSR, GABA-B1, GPRC6A, mGlu, and TAS1R receptors.


Pssm-ID: 320416  Cd Length: 253  Bit Score: 126.77  E-value: 1.44e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 506 PLGMALgctaLCFSTLTVLIL----FTFLKYKDTPIVKANNCLLsyillislifCFL---------CSLL-FIGHPNHIT 571
Cdd:cd15289     1 PVSWAL----LTALTLLLLLLagtaLLFALNLTTPVVKSAGGRT----------CFLmlgslaaasCSLYcHFGEPTWLA 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 572 CILQQTTFGVFFTVAISTVLAKTITVVMAFKISTPGNRM-KGMLTSGAPNLVIPICTLIQLVLCGIWLGTSPPFIDRDIQ 650
Cdd:cd15289    67 CLLKQPLFSLSFTVCLSCIAVRSFQIVCIFKLASKLPRFyETWAKNHGPELFILISSAVQLLISLLWLVLNPPVPTKDYD 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 651 SEPGKTIVICNKGSIFAFHFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVV 730
Cdd:cd15289   147 RYPDLIVLECSQTLSVGSFLELLYNCLLSISCFVFSYMGKDLPANYNEAKCITFSLLIYFISWISFFTTYSIYRGKYLMA 226
                         250       260
                  ....*....|....*....|....*.
gi 1958677300 731 VEVFSILASSAGLLGCIFVPKCYVIL 756
Cdd:cd15289   227 INVLAILSSLLGIFGGYFLPKVYIIL 252
7tmC_mGluRs cd15045
metabotropic glutamate receptors, member of the class C family of seven-transmembrane G ...
514-756 9.29e-31

metabotropic glutamate receptors, member of the class C family of seven-transmembrane G protein-coupled receptors; The metabotropic glutamate receptors (mGluRs) are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group I mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to (Gi/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320173 [Multi-domain]  Cd Length: 253  Bit Score: 121.58  E-value: 9.29e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 514 TALCFST----LTVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTVAIST 589
Cdd:cd15045     5 GAMAFASlgilLTLFVLVVFVRYRDTPVVKASGRELSYVLLAGILLSYVMTFVLVAKPSTIVCGLQRFGLGLCFTVCYAA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 590 VLAKTITVVMAFKISTPGNRmKGMLTSGAPNLVIPIC-TLIQLVLCGIWLGTSPPfidRDIQSEP--GKTIVICNKGSIF 666
Cdd:cd15045    85 ILTKTNRIARIFRLGKKSAK-RPRFISPRSQLVITGLlVSVQVLVLAVWLILSPP---RATHHYPtrDKNVLVCSSALDA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 667 AFHFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVVVEVFSILASSAGL--L 744
Cdd:cd15045   161 SYLIGLAYPILLIILCTVYAFKTRKIPEGFNEAKYIGFTMYTTCIIWLAFVPLYFTTASNIEVRITTLSVSISLSATvqL 240
                         250
                  ....*....|..
gi 1958677300 745 GCIFVPKCYVIL 756
Cdd:cd15045   241 ACLFAPKVYIIL 252
7tmC_TAS1R cd15046
type 1 taste receptors, member of the class C of seven-transmembrane G protein-coupled ...
506-756 1.25e-29

type 1 taste receptors, member of the class C of seven-transmembrane G protein-coupled receptors; This subfamily represents the type I taste receptors (TAS1Rs) that belongs to the class C family of G protein-coupled receptors. The functional TAS1Rs are obligatory heterodimers built from three known members, TAS1R1-3. TAS1R1 combines with TAS1R3 to form an umami taste receptor, which is responsible for the perception of savory taste, such as the food additive mono-sodium glutamate (MSG); whereas the combination of TAS1R2-TAS1R3 forms a sweet-taste receptor for sugars and D-amino acids. On the other hand, the type II taste receptors (TAS2Rs), which belong to the class A family of GPCRs, recognize bitter tasting compounds. In the case of sweet, for example, the TAS1R2-TAS1R3 heterodimer activates phospholipase C (PLC) via alpha-gustducin, a heterodimeric G protein that is involved in perception of sweet and bitter tastes. This activation leads to generation of inositol (1, 4, 5)-trisphosphate (IP3) and diacylglycerol (DAG), and consequently increases intracellular Ca2+ mobilization and activates a cation channel, TRPM5. In contrast to the TAS1R2-TAS1R3 heterodimer, TAS1R3 alone could activate adenylate cyclase leading to cAMP formation in the absence of alpha-gustducin. Each TAS1R contains a large extracellular Venus flytrap-like domain in the N-terminus, cysteine-rich domain (CRD) and seven-transmembrane (7TM) domain, which are characteristics of the class C GPCRs. The Venus flytrap-like domain shares strong sequence homology to bacterial periplasmic binding proteins and possess the orthosteric amino acid and calcium binding sites for members of the class C, including CaSR, GABA-B1, GPRC6A, mGlu, and TAS1R receptors.


Pssm-ID: 320174 [Multi-domain]  Cd Length: 253  Bit Score: 118.40  E-value: 1.25e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 506 PLGMALGCTALCFSTLTVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTV 585
Cdd:cd15046     1 APTVAVLLLAALGLLSTLAILVIFWRNFNTPVVRSAGGPMCFLMLTLLLVAYMSVPVYFGPPKVSTCLLRQALFPLCFTV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 586 AISTVLAKTITVVMAFKIST--PGNRMKGMLTSGaPNLVIPICTLIQLVLCGIWLGTSPPFIDRDIQSEPGKTIVICNKG 663
Cdd:cd15046    81 CLACIAVRSFQIVCIFKMASrfPRAYSYWVKYHG-PYVSIAFITVLKMVIVVIGMLATPPSPTTDTDPDPKITIVSCNPN 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 664 SIFAFHFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVVVEVFSILASSAGL 743
Cdd:cd15046   160 YRNSSLFNTSLDLLLSVVCFSFSYMGKDLPTNYNEAKFITFSLTFYFTSWISFCTFMLAYSGVLVTIVDLLATLLSLLAF 239
                         250
                  ....*....|...
gi 1958677300 744 LGCIFVPKCYVIL 756
Cdd:cd15046   240 SLGYFLPKCYIIL 252
PBP1_mGluR cd06362
ligand binding domain of metabotropic glutamate receptors (mGluR); Ligand binding domain of ...
81-411 2.25e-28

ligand binding domain of metabotropic glutamate receptors (mGluR); Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.


Pssm-ID: 380585 [Multi-domain]  Cd Length: 460  Bit Score: 119.32  E-value: 2.25e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300  81 LLFATDEINRNPYLLPNMSFMFsRIVGMCEDTLGSLER-----KYTPQS-NSWKFINYNCGIQEVCD-------VQLTGP 147
Cdd:cd06362    36 MLFAIDEINSRPDLLPNITLGF-VILDDCSSDTTALEQalhfiRDSLLSqESAGFCQCSDDPPNLDEsfqfydvVGVIGA 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 148 sWTTSLKLAINS-----RNPKVFFGPFNPNLSDHDQFPYVYQVATEDTCLSHAMVSLMLHFRWTWIGLVITDDDQGIQLL 222
Cdd:cd06362   115 -ESSSVSIQVANllrlfKIPQISYASTSDELSDKERYPYFLRTVPSDSFQAKAIVDILLHFNWTYVSVVYSEGSYGEEGY 193
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 223 TDLREEMERHGMCLAFVNMIPETMQiymtkAKIYDNQIMT----SSAKVVIIYGEMNSTLEVsFRrwaylAAQR------ 292
Cdd:cd06362   194 KAFKKLARKAGICIAESERISQDSD-----EKDYDDVIQKllqkKNARVVVLFADQEDIRGL-LR-----AAKRlgasgr 262
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 293 -IWITTSQWDVITTRKDFSLDFFHGTFTFAHHNVELPKFRHFMQTMNTSKYPVDIsqsmlgW------NYFNCSI-SKNS 364
Cdd:cd06362   263 fIWLGSDGWGTNIDDLKGNEDVALGALTVQPYSEEVPRFDDYFKSLTPSNNTRNP------WfrefwqELFQCSFrPSRE 336
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1958677300 365 ISKIDHFTLNNTLEWLAQHKFDMFlseegynLYNAVYAVAHTYHELI 411
Cdd:cd06362   337 NSCNDDKLLINKSEGYKQESKVSF-------VIDAVYAFAHALHKMH 376
7tmC_mGluR_group1 cd15285
metabotropic glutamate receptors in group 1, member of the class C family of ...
514-756 9.47e-28

metabotropic glutamate receptors in group 1, member of the class C family of seven-transmembrane G protein-coupled receptors; Group 1 mGluRs includes mGluR1 and mGluR5, as well as their closely related invertebrate receptors. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320412  Cd Length: 250  Bit Score: 112.73  E-value: 9.47e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 514 TALCFSTL----TVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTVAIST 589
Cdd:cd15285     5 VAMVFACVgilaTLFVTVVFIRHNDTPVVKASTRELSYIILAGILLCYASTFALLAKPSTISCYLQRILPGLSFAMIYAA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 590 VLAKT--ITVVMAFKISTPGNRmKGMLTSGAPNLVIP-ICTLIQLVLCGIWLGTSPPFIDRDIQSePGKTIVICNKgSIF 666
Cdd:cd15285    85 LVTKTnrIARILAGSKKKILTR-KPRFMSASAQVVITgILISVEVAIIVVMLILEPPDATLDYPT-PKRVRLICNT-STL 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 667 AFHFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVVveVFSILASSAGLLGC 746
Cdd:cd15285   162 GFVVPLGFDFLLILLCTLYAFKTRNLPENFNEAKFIGFTMYTTCVIWLAFLPIYFGSDNKEITL--CFSVSLSATVALVF 239
                         250
                  ....*....|
gi 1958677300 747 IFVPKCYVIL 756
Cdd:cd15285   240 LFFPKVYIIL 249
7tmC_mGluRs_group2_3 cd15934
metabotropic glutamate receptors in group 2 and 3, member of the class C family of ...
516-756 3.30e-27

metabotropic glutamate receptors in group 2 and 3, member of the class C family of seven-transmembrane G protein-coupled receptors; The metabotropic glutamate receptors (mGluRs) are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. The mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group I mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to (Gi/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320600  Cd Length: 252  Bit Score: 111.17  E-value: 3.30e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 516 LCFSTL----TVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTVAISTVL 591
Cdd:cd15934     7 VVFALLgilaTLFVIVVFIRYNDTPVVKASGRELSYVLLTGILLCYLMTFVLLAKPSVITCALRRLGLGLGFSICYAALL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 592 AKTITVvmaFKISTPGNR--MKGMLTSGAPNLVIPIC-TLIQLVLCGIWLGTSPPFIDRDIQsEPGKTIVICNkGSIFAF 668
Cdd:cd15934    87 TKTNRI---SRIFNSGKRsaKRPRFISPKSQLVICLGlISVQLIGVLVWLVVEPPGTRIDYP-RRDQVVLKCK-ISDSSL 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 669 HFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKG--KVMVVVEVFSILASSAGLLGC 746
Cdd:cd15934   162 LISLVYNMLLIILCTVYAFKTRKIPENFNEAKFIGFTMYTTCIIWLAFVPIYFGTSNdfKIQTTTLCVSISLSASVALGC 241
                         250
                  ....*....|
gi 1958677300 747 IFVPKCYVIL 756
Cdd:cd15934   242 LFAPKVYIIL 251
7tmC_mGluR2 cd15447
metabotropic glutamate receptor 2 in group 2, member of the class C family of ...
514-756 3.75e-27

metabotropic glutamate receptor 2 in group 2, member of the class C family of seven-transmembrane G protein-coupled receptors; The metabotropic glutamate receptors (mGluRs) in group 2 include mGluR 2 and 3. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320563  Cd Length: 254  Bit Score: 111.17  E-value: 3.75e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 514 TALCFSTLTVLILF-TFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTVAISTVLA 592
Cdd:cd15447     8 TISCLGILSTLFVVgVFVKNNETPVVKASGRELCYILLLGVLLCYLMTFIFIAKPSTAVCTLRRLGLGTSFAVCYSALLT 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 593 KTITVVMAFKISTPGNRMKGMLTsgaPNLVIPICTLI---QLVLCGIWLGTSPPFIDRDIQSEPGKTIVI-CNKGSIfAF 668
Cdd:cd15447    88 KTNRIARIFSGAKDGAQRPRFIS---PASQVAICLALiscQLLVVLIWLLVEAPGTRKETAPERRYVVTLkCNSRDS-SM 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 669 HFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVVVEVFSILASSAG--LLGC 746
Cdd:cd15447   164 LISLTYNVLLIILCTLYAFKTRKCPENFNEAKFIGFTMYTTCIIWLAFLPIFYVTSSDYRVQTTTMCISVSLSGsvVLGC 243
                         250
                  ....*....|
gi 1958677300 747 IFVPKCYVIL 756
Cdd:cd15447   244 LFAPKLHIIL 253
PBP1_GPCR_family_C-like cd06350
ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory ...
68-336 3.00e-25

ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate; categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (m; Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extracellular region is further divided into the ligand-binding domain (LBD) and the cysteine-rich domain. The LBD has sequence similarity to the LIVBP, which is a bacterial periplasmic protein (PBP), as well as to the extracellular region of both iGluR and the gamma-aminobutyric acid (GABA)b receptor. iGluRs are divided into three main subtypes based on pharmacological profile: NMDA, AMPA, and kainate receptors. All family C GPCRs have a large extracellular N terminus that contain a domain with homology to bacterial periplasmic amino acid-binding proteins.


Pssm-ID: 380573  Cd Length: 350  Bit Score: 107.77  E-value: 3.00e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300  68 FRIPARRYEVFLVLLFATDEINRNPYLLPNMSFMF-------SRIVGMCE--DTLGSLERKYTPQSNswkfiNYNCGIQE 138
Cdd:cd06350    20 GILNPRGVQLVEAMIYAIEEINNDSSLLPNVTLGYdirdtcsSSSVALESslEFLLDNGIKLLANSN-----GQNIGPPN 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 139 VcdVQLTGP-SWTTSL---KLAINSRNPKVFFGPFNPNLSDHDQFPYVYQVATEDTCLSHAMVSLMLHFRWTWIGLVITD 214
Cdd:cd06350    95 I--VAVIGAaSSSVSIavaNLLGLFKIPQISYASTSPELSDKIRYPYFLRTVPSDTLQAKAIADLLKHFNWNYVSTVYSD 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 215 DDQGIQLLTDLREEMERHGMCLAFVNMIPETmqiymTKAKIYDNQI----MTSSAKVVIIYGEMNSTLEvsfrrwaYLAA 290
Cdd:cd06350   173 DDYGRSGIEAFEREAKERGICIAQTIVIPEN-----STEDEIKRIIdklkSSPNAKVVVLFLTESDARE-------LLKE 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1958677300 291 -------QRIWITTSQWDVITTRKDFSLDFFHGTFTFAHHNVELPKFRHFMQT 336
Cdd:cd06350   241 akrrnltGFTWIGSDGWGDSLVILEGYEDVLGGAIGVVPRSKEIPGFDDYLKS 293
7tmC_mGluR_group2 cd15284
metabotropic glutamate receptors in group 2, member of the class C family of ...
522-756 4.35e-25

metabotropic glutamate receptors in group 2, member of the class C family of seven-transmembrane G protein-coupled receptors; The metabotropic glutamate receptors (mGluRs) in group 2 include mGluR 2 and 3. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320411  Cd Length: 254  Bit Score: 104.93  E-value: 4.35e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 522 TVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTVAISTVLAKTITVVMAF 601
Cdd:cd15284    17 TLFVIGVFIKHNNTPLVKASGRELCYILLFGVFLCYCMTFIFIAKPSPAICTLRRLGLGTSFAVCYSALLTKTNRIARIF 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 602 KISTPGNRMKGMLTSGAPNLVIPICTLIQLVLCGIWLGTSPPFIDRDIQSEPGKTIVI-CNKGSIfAFHFTLGYLDSLTL 680
Cdd:cd15284    97 SGVKDGAQRPRFISPSSQVFICLALISVQLLVVSVWLLVEAPGTRRYTLPEKRETVILkCNVRDS-SMLISLTYDVVLVI 175
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958677300 681 MSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVVVEVFSILASSAG--LLGCIFVPKCYVIL 756
Cdd:cd15284   176 LCTVYAFKTRKCPENFNEAKFIGFTMYTTCIIWLAFLPIFYVTSSDYRVQTTTMCISVSLSGfvVLGCLFAPKVHIIL 253
7tmC_mGluR3 cd15448
metabotropic glutamate receptor 3 in group 2, member of the class C family of ...
522-756 6.35e-25

metabotropic glutamate receptor 3 in group 2, member of the class C family of seven-transmembrane G protein-coupled receptors; The metabotropic glutamate receptors (mGluRs) in group 2 include mGluR 2 and 3. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320564  Cd Length: 254  Bit Score: 104.64  E-value: 6.35e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 522 TVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTVAISTVLAKTITVVMAF 601
Cdd:cd15448    17 TCMVITVFIKHNNTPLVKASGRELCYILLFGVFLSYCMTFFFIAKPSPVICTLRRLGLGTSFAVCYSALLTKTNCIARIF 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 602 KISTPGNRMKGMLTSGAPNLVIPICTLIQLVLCGIWLGTSPPFIDRDIQSEPGKTIVI-CN-KGSifAFHFTLGYLDSLT 679
Cdd:cd15448    97 DGVKNGAQRPKFISPSSQVFICLSLILVQIVVVSVWLILEAPGTRRYTLPEKRETVILkCNvKDS--SMLISLTYDVVLV 174
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958677300 680 LMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVVVEVFSILASSAG--LLGCIFVPKCYVIL 756
Cdd:cd15448   175 ILCTVYAFKTRKCPENFNEAKFIGFTMYTTCIIWLAFLPIFYVTSSDYRVQTTTMCISVSLSGfvVLGCLFAPKVHIIL 253
ANF_receptor pfam01094
Receptor family ligand binding region; This family includes extracellular ligand binding ...
77-410 2.35e-24

Receptor family ligand binding region; This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure.


Pssm-ID: 460062 [Multi-domain]  Cd Length: 347  Bit Score: 105.16  E-value: 2.35e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300  77 VFLVLLFATDEINRNPYLLPNMSFMFSRIVGMCEDTLGSLERKYTPQSNSWKFInyncgiqevcdvqltGPSWTTSLKLA 156
Cdd:pfam01094   2 VLLAVRLAVEDINADPGLLPGTKLEYIILDTCCDPSLALAAALDLLKGEVVAII---------------GPSCSSVASAV 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 157 IN----SRNPKVFFGPFNPNLSDHDQFPYVYQVATEDTCLSHAMVSLMLHFRWTWIGLVITDDDQGIQLLTDLREEMERH 232
Cdd:pfam01094  67 ASlaneWKVPLISYGSTSPALSDLNRYPTFLRTTPSDTSQADAIVDILKHFGWKRVALIYSDDDYGESGLQALEDALRER 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 233 GMCLAFVNMIPETMQIymtkAKIYDN--QIMTSSAKVVII--YGEMNSTLEVSFRRWAYLAAQRIWITTSQW-DVITTRK 307
Cdd:pfam01094 147 GIRVAYKAVIPPAQDD----DEIARKllKEVKSRARVIVVccSSETARRLLKAARELGMMGEGYVWIATDGLtTSLVILN 222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 308 DFSLDFFHGTFTFAHHNVELPKFRHFMQTMNTSkypvdisqsmlgwnyfncsiSKNSISKIDHFTLNNTLEwlaqhkfdm 387
Cdd:pfam01094 223 PSTLEAAGGVLGFRLHPPDSPEFSEFFWEKLSD--------------------EKELYENLGGLPVSYGAL--------- 273
                         330       340
                  ....*....|....*....|...
gi 1958677300 388 flseegynLYNAVYAVAHTYHEL 410
Cdd:pfam01094 274 --------AYDAVYLLAHALHNL 288
7tmC_mGluR_group3 cd15286
metabotropic glutamate receptors in group 3, member of the class C family of ...
522-766 3.74e-23

metabotropic glutamate receptors in group 3, member of the class C family of seven-transmembrane G protein-coupled receptors; The metabotropic glutamate receptors (mGluRs) in group 3 include mGluRs 4, 6, 7, and 8. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320413  Cd Length: 271  Bit Score: 99.88  E-value: 3.74e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 522 TVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTVAISTVLAKTITVVMAF 601
Cdd:cd15286    17 TLFVLVTFVRYNDTPIVRASGRELSYVLLTGIFLCYAITFLMVAEPGVGVCSLRRLFLGLGMSLSYAALLTKTNRIYRIF 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 602 ---KISTPGNRmkgmLTSGAPNLVIPIC-TLIQLVLCGIWLGTSPP--FID----RDIQSEPGKTIVICN--KGSIFAfh 669
Cdd:cd15286    97 eqgKKSVTPPR----FISPTSQLVITFSlISVQLLGVLAWFAVDPPhaLIDyeegRTPDPEQARGVLRCDmsDLSLIC-- 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 670 fTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHST-----KGKVMVVVEVFSILASSAGLL 744
Cdd:cd15286   171 -CLGYSLLLMVTCTVYAIKARGVPETFNEAKPIGFTMYTTCIVWLAFIPIFFGTaqsaeKLYIQTATLTVSMSLSASVSL 249
                         250       260
                  ....*....|....*....|..
gi 1958677300 745 GCIFVPKCYVILVRTDSNFLQK 766
Cdd:cd15286   250 GMLYMPKVYVILFHPEQNVQKR 271
7tmC_mGluR4 cd15452
metabotropic glutamate receptor 4 in group 3, member of the class C family of ...
522-762 5.03e-23

metabotropic glutamate receptor 4 in group 3, member of the class C family of seven-transmembrane G protein-coupled receptors; The receptors in group 3 include mGluRs 4, 6, 7, and 8. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320568 [Multi-domain]  Cd Length: 327  Bit Score: 100.83  E-value: 5.03e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 522 TVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTVAISTVLAKTITVVMAF 601
Cdd:cd15452    17 TLFVVVTFVRYNDTPIVKASGRELSYVLLTGIFLCYATTFLMIAEPDLGTCSLRRIFLGLGMSISYAALLTKTNRIYRIF 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 602 KistpgnrmKGMLTSGAPNLVIPICTL--------IQLVLCGIWLGTSP--PFID----RDIQSEPGKTIVICNKgSIFA 667
Cdd:cd15452    97 E--------QGKRSVSAPRFISPASQLvitfslisLQLLGVCVWFLVDPshSVVDyedqRTPDPQFARGVLKCDI-SDLS 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 668 FHFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHST-----KGKVMVVVEVFSILASSAG 742
Cdd:cd15452   168 LICLLGYSMLLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIIWLAFIPIFFGTsqsaeKMYIQTTTLTISVSLSASV 247
                         250       260
                  ....*....|....*....|
gi 1958677300 743 LLGCIFVPKCYVILVRTDSN 762
Cdd:cd15452   248 SLGMLYMPKVYVILFHPEQN 267
7tmC_mGluR6 cd15453
metabotropic glutamate receptor 6 in group 3, member of the class C family of ...
522-768 7.96e-23

metabotropic glutamate receptor 6 in group 3, member of the class C family of seven-transmembrane G protein-coupled receptors; The receptors in group 3 include mGluRs 4, 6, 7, and 8. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320569 [Multi-domain]  Cd Length: 273  Bit Score: 98.95  E-value: 7.96e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 522 TVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTVAISTVLAKTITVVMAF 601
Cdd:cd15453    17 TTTVVITFVRFNNTPIVRASGRELSYVLLTGIFLIYAITFLMVAEPGAAVCAFRRLFLGLGTTLSYSALLTKTNRIYRIF 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 602 KistpgnrmKGMLTSGAPNLVIPICTLI--------QLVLCGIWLGTSPP--FID----RDIQSEPGKTIVICNKgSIFA 667
Cdd:cd15453    97 E--------QGKRSVTPPPFISPTSQLVitfsltslQVVGVIAWLGAQPPhsVIDyeeqRTVDPEQARGVLKCDM-SDLS 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 668 FHFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHST-----KGKVMVVVEVFSILASSAG 742
Cdd:cd15453   168 LIGCLGYSLLLMVTCTVYAIKARGVPETFNEAKPIGFTMYTTCIIWLAFVPIFFGTaqsaeKIYIQTTTLTVSLSLSASV 247
                         250       260
                  ....*....|....*....|....*.
gi 1958677300 743 LLGCIFVPKCYVILVRTDSNfLQKYK 768
Cdd:cd15453   248 SLGMLYVPKTYVILFHPEQN-VQKRK 272
7tmC_TAS1R2a-like cd15287
type 1 taste receptor subtype 2a and similar proteins, member of the class C of ...
514-756 1.15e-22

type 1 taste receptor subtype 2a and similar proteins, member of the class C of seven-transmembrane G protein-coupled receptors; This group includes TAS1R2a and its similar proteins found in fish. They are members of the type I taste receptor (TAS1R) family that belongs to the class C of G protein-coupled receptors. The functional TAS1Rs are obligatory heterodimers built from three known members, TAS1R1-3. TAS1R1 combines with TAS1R3 to form an umami taste receptor, which is responsible for the perception of savory taste, such as the food additive mono-sodium glutamate (MSG); whereas the combination of TAS1R2-TAS1R3 forms a sweet-taste receptor for sugars and D-amino acids. On the other hand, the type II taste receptors (TAS2Rs), which belong to the class A family of GPCRs, recognize bitter tasting compounds. In the case of sweet, for example, the TAS1R2-TAS1R3 heterodimer activates phospholipase C (PLC) via alpha-gustducin, a heterodimeric G protein that is involved in perception of sweet and bitter tastes. This activation leads to generation of inositol (1, 4, 5)-trisphosphate (IP3) and diacylglycerol (DAG), and consequently increases intracellular Ca2+ mobilization and activates a cation channel, TRPM5. In contrast to the TAS1R2-TAS1R3 heterodimer, TAS1R3 alone could activate adenylate cyclase leading to cAMP formation in the absence of alpha-gustducin. Each TAS1R contains a large extracellular Venus flytrap-like domain in the N-terminus, cysteine-rich domain (CRD) and seven-transmembrane (7TM) domain, which are characteristics of the class C GPCRs. The Venus flytrap-like domain shares strong sequence homology to bacterial periplasmic binding proteins and possess the orthosteric amino acid and calcium binding sites for members of the class C, including CaSR, GABA-B1, GPRC6A, mGlu, and TAS1R receptors.


Pssm-ID: 320414  Cd Length: 252  Bit Score: 97.83  E-value: 1.15e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 514 TALCFSTLTVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTVAISTVLAK 593
Cdd:cd15287     9 GACVLVGLTLAVSVLFAINYNTPVVRSAGGPMCFLILGCLSLCSVSVFFYFGKPTVASCILRYFPFLLFYTVCLACFVVR 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 594 TITVVMAFKISTPGNRMKGMLTS-GAPNLVIPICTLIQLVLCGIWLGTSPPFIDRDIQSEPGKTIVICNkGSIFAFHFTL 672
Cdd:cd15287    89 SFQIVCIFKIAAKFPKLHSWWVKyHGQWLLIAVAFVIQALLLITGFSFSPPKPYNDTSWYPDKIILSCD-INLKATSMSL 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 673 GYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVVVEVFSILASSAGLLGCIFVPKC 752
Cdd:cd15287   168 VLLLSLCCLCFIFSYMGKDLPKNYNEAKAITFCLLLLILTWIIFATEYMLYRGKYIQLLNALAVLSSLYSFLLWYFLPKC 247

                  ....
gi 1958677300 753 YVIL 756
Cdd:cd15287   248 YIII 251
7tmC_mGluR5 cd15450
metabotropic glutamate receptor 5 in group 1, member of the class C family of ...
515-756 1.34e-21

metabotropic glutamate receptor 5 in group 1, member of the class C family of seven-transmembrane G protein-coupled receptors; Group 1 mGluRs includes mGluR1 and mGluR5, as well as their closely related invertebrate receptors. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320566  Cd Length: 250  Bit Score: 94.67  E-value: 1.34e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 515 ALCFSTL----TVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTVAISTV 590
Cdd:cd15450     6 AVVFACLgllaTLFVTVIFIIYRDTPVVKSSSRELCYIILAGICLGYLCTFCLIAKPKQIYCYLQRIGIGLSPAMSYSAL 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 591 LAKT--ITVVMAFKISTPGNRMKGMLTSGAPNLVIPICTLIQLVLCGIWLGTSPPFIDRDIQSePGKTIVICNKGSIFAF 668
Cdd:cd15450    86 VTKTnrIARILAGSKKKICTKKPRFMSACAQLVIAFILICIQLGIIVALFIMEPPDIMHDYPS-IREVYLICNTTNLGVV 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 669 HfTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKVMVVveVFSILASSAGLLGCIF 748
Cdd:cd15450   165 T-PLGYNGLLILSCTFYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKIITM--CFSVSLSATVALGCMF 241

                  ....*...
gi 1958677300 749 VPKCYVIL 756
Cdd:cd15450   242 VPKVYIIL 249
7tmC_mGluR7 cd15451
metabotropic glutamate receptor 7 in group 3, member of the class C family of ...
522-771 3.05e-21

metabotropic glutamate receptor 7 in group 3, member of the class C family of seven-transmembrane G protein-coupled receptors; The receptors in group 3 include mGluRs 4, 6, 7, and 8. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320567  Cd Length: 307  Bit Score: 95.09  E-value: 3.05e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 522 TVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTVAISTVLAKTITVVMAF 601
Cdd:cd15451    17 TIFVMATFIRYNDTPIVRASGRELSYVLLTGIFLCYIITFLMIAKPDVAVCSFRRIFLGLGMCISYAALLTKTNRIYRIF 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 602 KistpgnrmKGMLTSGAPNLVIPICTL--------IQLVLCGIWLGTSPP--FIDRD----IQSEPGKTIVICNKGSIfA 667
Cdd:cd15451    97 E--------QGKKSVTAPRLISPTSQLaitsslisVQLLGVLIWFAVDPPniIIDYDeqktMNPEQARGVLKCDITDL-Q 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 668 FHFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHST-----KGKVMVVVEVFSILASSAG 742
Cdd:cd15451   168 IICSLGYSILLMVTCTVYAIKTRGVPENFNEAKPIGFTMYTTCIVWLAFIPIFFGTaqsaeKLYIQTTTLTISMNLSASV 247
                         250       260
                  ....*....|....*....|....*....
gi 1958677300 743 LLGCIFVPKCYVILVRTDSNfLQKYKDKF 771
Cdd:cd15451   248 ALGMLYMPKVYIIIFHPELN-VQKRKRSF 275
7tmC_mGluR8 cd15454
metabotropic glutamate receptor 8 in group 3, member of the class C family of ...
522-771 1.09e-20

metabotropic glutamate receptor 8 in group 3, member of the class C family of seven-transmembrane G protein-coupled receptors; The receptors in group 3 include mGluRs 4, 6, 7, and 8. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320570 [Multi-domain]  Cd Length: 311  Bit Score: 93.54  E-value: 1.09e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 522 TVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTVAISTVLAKTITVVMAF 601
Cdd:cd15454    17 TTFVIVTFVRYNDTPIVRASGRELSYVLLTGIFLCYAITFLMIATPDTGICSFRRVFLGLGMCFSYAALLTKTNRIHRIF 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 602 KistpgnrmKGMLTSGAPNLVIPICTL--------IQLVLCGIWLGTSPPFI------DRDIQSEPGKTIVICNKgSIFA 667
Cdd:cd15454    97 E--------QGKKSVTAPKFISPASQLvitfslisVQLLGVFVWFAVDPPHTivdygeQRTLDPEKARGVLKCDI-SDLS 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 668 FHFTLGYLDSLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHST-----KGKVMVVVEVFSILASSAG 742
Cdd:cd15454   168 LICSLGYSILLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIIWLAFIPIFFGTaqsaeRMYIQTTTLTISMSLSASV 247
                         250       260
                  ....*....|....*....|....*....
gi 1958677300 743 LLGCIFVPKCYVILVRTDSNfLQKYKDKF 771
Cdd:cd15454   248 SLGMLYMPKVYIIIFHPEQN-VQKRKRSF 275
7tmC_mGluR1 cd15449
metabotropic glutamate receptor 1 in group 1, member of the class C family of ...
521-756 4.96e-20

metabotropic glutamate receptor 1 in group 1, member of the class C family of seven-transmembrane G protein-coupled receptors; Group 1 mGluRs includes mGluR1 and mGluR5, as well as their closely related invertebrate receptors. They are homodimeric class C G-protein coupled receptors which are activated by glutamate, the major excitatory neurotransmitter of the CNS. mGluRs are involved in regulating neuronal excitability and synaptic transmission via intracellular activation of second messenger signaling pathways. While the ionotropic glutamate receptor subtypes (AMPA, NMDA, and kainite) mediate fast excitatory postsynaptic transmission, mGluRs are known to mediate slower excitatory postsynaptic responses and to be involved in synaptic plasticity in the mammalian brain. In addition to seven-transmembrane helices, the class C GPCRs are characterized by a large N-terminal extracellular Venus flytrap-like domain, which is composed of two adjacent lobes separated by a cleft which binds an endogenous ligand. Moreover, they exist as either homo- or heterodimers, which are essential for their function. For instance, mGluRs form homodimers via interactions between the N-terminal Venus flytrap domains and the intermolecular disulphide bonds between cysteine residues located in the cysteine-rich domain (CRD). At least eight different subtypes of metabotropic receptors (mGluR1-8) have been identified and further classified into three groups based on their sequence homology, pharmacological properties, and signaling pathways. Group 1 (mGluR1 and mGluR5) receptors are predominantly located postsynaptically on neurons and are involved in long-term synaptic plasticity in the brain, including long-term potentiation (LTP) in the hippocampus and long-term depression (LTD) in the cerebellum. They are coupled to G(q/11) proteins, thereby activating phospholipase C to generate inositol-1,4,5-triphosphate (IP3) and diacyglycerol (DAG), which in turn lead to Ca2+ release and protein kinase C activation, respectively. Group 1 mGluR expression is shown to be strongly upregulated in animal models of epilepsy, brain injury, inflammatory, and neuropathic pain, as well as in patients with amyotrophic lateral sclerosis or multiple sclerosis. Group 2 (mGluR2 and mGluR3) and 3 (mGluR4, mGluR6, mGluR7, and mGluR8) receptors are predominantly localized presynaptically in the active region of neurotransmitter release. They are coupled to G(i/o) proteins, which leads to inhibition of adenylate cyclase activity and cAMP formation, and consequently to a decrease in protein kinase A (PKA) activity. Ultimately, activation of these receptors leads to inhibition of neurotransmitter release such as glutamate and GABA via inhibition of Ca2+ channels and activation of K+ channels. Furthermore, while activation of Group 1 mGluRs increases NMDA (N-methyl-D-aspartate) receptor activity and risk of neurotoxicity, Group 2 and 3 mGluRs decrease NMDA receptor activity and prevent neurotoxicity.


Pssm-ID: 320565  Cd Length: 250  Bit Score: 90.46  E-value: 4.96e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 521 LTVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTVAISTVLAKT--ITVV 598
Cdd:cd15449    16 VTMFVTLIFVLYRDTPVVKSSSRELCYIILAGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTnrIARI 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 599 MAFKISTPGNRMKGMLTSGAPNLVIPICTLIQLVLCGIWLGTSPPfidRDIQSEPG--KTIVICNKGSIFAFHfTLGYLD 676
Cdd:cd15449    96 LAGSKKKICTRKPRFMSAWAQVVIASILISVQLTLVVTLIIMEPP---MPILSYPSikEVYLICNTSNLGVVA-PLGYNG 171
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 677 SLTLMSFAVAFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGKvmVVVEVFSILASSAGLLGCIFVPKCYVIL 756
Cdd:cd15449   172 LLIMSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYK--IITTCFAVSLSVTVALGCMFTPKMYIII 249
NCD3G pfam07562
Nine Cysteines Domain of family 3 GPCR; This conserved sequence contains several ...
433-486 1.07e-17

Nine Cysteines Domain of family 3 GPCR; This conserved sequence contains several highly-conserved Cys residues that are predicted to form disulphide bridges. It is predicted to lie outside the cell membrane, tethered to the pfam00003 in several receptor proteins.


Pssm-ID: 462210  Cd Length: 53  Bit Score: 77.29  E-value: 1.07e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1958677300 433 PTSMCSVACIAGFRKIHQKQVTHCCFDCAHCPENEVSNeTDMEQCVRCPDDKYA 486
Cdd:pfam07562   1 PSSVCSESCPPGQRKSQQGGAPVCCWDCVPCPEGEISN-TDSDTCKKCPEGQWP 53
7tmC_TAS1R2 cd15288
type 1 taste receptor subtype 2, member of the class C of seven-transmembrane G ...
522-756 1.35e-16

type 1 taste receptor subtype 2, member of the class C of seven-transmembrane G protein-coupled receptors; This group represents TAS1R2, which is a member of the type I taste receptor (TAS1R) family that belongs to the class C of G protein-coupled receptors. The functional TAS1Rs are obligatory heterodimers built from three known members, TAS1R1-3. TAS1R1 combines with TAS1R3 to form an umami taste receptor, which is responsible for the perception of savory taste, such as the food additive mono-sodium glutamate (MSG); whereas the combination of TAS1R2-TAS1R3 forms a sweet-taste receptor for sugars and D-amino acids. On the other hand, the type II taste receptors (TAS2Rs), which belong to the class A family of GPCRs, recognize bitter tasting compounds. In the case of sweet, for example, the TAS1R2-TAS1R3 heterodimer activates phospholipase C (PLC) via alpha-gustducin, a heterodimeric G protein that is involved in perception of sweet and bitter tastes. This activation leads to generation of inositol (1, 4, 5)-trisphosphate (IP3) and diacylglycerol (DAG), and consequently increases intracellular Ca2+ mobilization and activates a cation channel, TRPM5. In contrast to the TAS1R2-TAS1R3 heterodimer, TAS1R3 alone could activate adenylate cyclase leading to cAMP formation in the absence of alpha-gustducin. Each TAS1R contains a large extracellular Venus flytrap-like domain in the N-terminus, cysteine-rich domain (CRD) and seven-transmembrane (7TM) domain, which are characteristics of the class C GPCRs. The Venus flytrap-like domain shares strong sequence homology to bacterial periplasmic binding proteins and possess the orthosteric amino acid and calcium binding sites for members of the class C, including CaSR, GABA-B1, GPRC6A, mGlu, and TAS1R receptors.


Pssm-ID: 320415  Cd Length: 254  Bit Score: 80.22  E-value: 1.35e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 522 TVLILFTFLKYKDTPIVKANNCLLSYILLISLIFCFLCSLLFIGHPNHITCILQQTTFGVFFTVAISTVLAKTITVVMAF 601
Cdd:cd15288    17 TLAILVIFGRHFQTPVVRSAGGRMCFLMLAPLLVAYVNVPVYVGIPTVFTCLCRQTLFPLCFTVCISCIAVRSFQIVCIF 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 602 KISTPGNRMKGM-LTSGAPNLVIPICTLIQLVLCGIWLGTSPPFIDRDIQSE-PGKTIVICNKGSIFAFHFTLGYLDSLT 679
Cdd:cd15288    97 KMARRLPRAYSYwVKYNGPYVFVALITLLKVVIVVINVLAHPTAPTTRADPDdPQVMILQCNPNYRLALLFNTSLDLLLS 176
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 680 LMSFAVAFLARNLPDRFNEAKFLTFSMLVF--CSVWI-TFLPVYHStkgkvmVVVEVFSILASSAGLLGC---IFVPKCY 753
Cdd:cd15288   177 VLGFCFAYMGKELPTNYNEAKFITLCMTFYfaSSVFLcTFMSVYEG------VLVTIFDALVTVINLLGIslgYFGPKCY 250

                  ...
gi 1958677300 754 VIL 756
Cdd:cd15288   251 MIL 253
PBP1_taste_receptor cd06363
ligand-binding domain of the T1R taste receptor; Ligand-binding domain of the T1R taste ...
74-410 5.32e-16

ligand-binding domain of the T1R taste receptor; Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.


Pssm-ID: 380586 [Multi-domain]  Cd Length: 418  Bit Score: 80.81  E-value: 5.32e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300  74 RYEVFLVLLFATDEINRNPYLLPNMSFMFsRIVGMCEDTL---GSLerkytpqsnswKFI--NYNCGIQEVCD------- 141
Cdd:cd06363    41 GYHLAQAMRFAVEEINNSSDLLPGVTLGY-EIFDTCSDAVnfrPTL-----------SFLsqNGSHDIEVQCNytnyqpr 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 142 -VQLTGPSwTTSLKL---AINSRN--PKVFFGPFNPNLSDHDQFPYVYQVATEDTCLSHAMVSLMLHFRWTWIGLVITDD 215
Cdd:cd06363   109 vVAVIGPD-SSELALttaKLLGFFlmPQISYGASSEELSNKLLYPSFLRTVPSDKYQVEAMVQLLQEFGWNWVAFLGSDD 187
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 216 DQGIQLLTDLREEMERHGMCLAFVNMIPETMQiymTKAKIYD--NQIMTSSAKVVIIYgemnstlevSFRRWAY-----L 288
Cdd:cd06363   188 EYGQDGLQLFSEKAANTGICVAYQGLIPTDTD---PKPKYQDilKKINQTKVNVVVVF---------APKQAAKaffeeV 255
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 289 AAQRI----WITTSQW---DVITTrkdfsldffhgtftfahhnveLPKfrhfMQTMNTskypvdisqsmlgwnyfncsis 361
Cdd:cd06363   256 IRQNLtgkvWIASEAWslnDTVTS---------------------LPG----IQSIGT---------------------- 288
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1958677300 362 knsiskidhfTLNNTLEWLAQHKFDMFLSEEGYNLYNAVYAVAHTYHEL 410
Cdd:cd06363   289 ----------VLGFAIQTGTLPGFQEFIYAFAFSVYAAVYAVAHALHNL 327
PBP1_GPC6A-like cd06361
ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a ...
162-339 1.17e-14

ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor; This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.


Pssm-ID: 380584 [Multi-domain]  Cd Length: 401  Bit Score: 76.64  E-value: 1.17e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 162 PKVFFGPFNPNLSDHDQFPYVYQVATEDTCLSHAMVSLMLHFRWTWIGLVITDDDQGIQLLTDLREEMERHGMCLAFVNM 241
Cdd:cd06361   127 PQISYESSAPILSDKLRFPSFLRTVPSDFHQTKAMAKLISHFGWNWVGIIYTDDDYGRSALESFIIQAEAENVCIAFKEV 206
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 242 IP-----ETMQIYMTkaKIYDNQIMTSSAKVVIIYGEmNSTLEVSFRRWAYLAAQRIWITTSQWDV---ITTRKDFS-LD 312
Cdd:cd06361   207 LPaylsdPTMNVRIN--DTIQTIQSSSQVNVVVLFLK-PSLVKKLFKEVIERNISKIWIASDNWSTareILKMPNINkVG 283
                         170       180
                  ....*....|....*....|....*..
gi 1958677300 313 FFHGtFTFAHHNVelPKFRHFMQTMNT 339
Cdd:cd06361   284 KILG-FTFKSGNI--SSFHNYLKNLLI 307
PBP1_glutamate_receptors-like cd06269
ligand-binding domain of family C G-protein couples receptors (GPCRs), membrane bound guanylyl ...
72-334 9.12e-10

ligand-binding domain of family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as natriuretic peptide receptors (NPRs), and N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of ionotropic glutamate rece; This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type 1 family. The family C GPCRs consists of metabotropic glutamate receptor (mGluR), a calcium-sensing receptor (CaSR), gamma-aminobutyric acid receptor (GABAbR), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing variants of the orphan receptors are not included in this CD. The family C GPCRs are activated by endogenous agonists such as amino acids, ions, and sugar based molecules. Their amino terminal ligand-binding region is homologous to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). The ionotropic glutamate receptors (iGluRs) have an integral ion channel and are subdivided into three major groups based on their pharmacology and structural similarities: NMDA receptors, AMPA receptors, and kainate receptors. The family of membrane bound guanylyl cyclases is further divided into three subfamilies: the ANP receptor (GC-A)/C-type natriuretic peptide receptor (GC-B), the heat-stable enterotoxin receptor (GC-C)/sensory organ specific membrane GCs such as retinal receptors (GC-E, GC-F), and olfactory receptors (GC-D and GC-G).


Pssm-ID: 380493 [Multi-domain]  Cd Length: 332  Bit Score: 60.89  E-value: 9.12e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300  72 ARRYEVFLvllFATDEINRNPYLLPNMSFMFSRIVGMCEDT---LGSLERKYTPQSnswkfinyncgiqevcdVQLTGPS 148
Cdd:cd06269    16 AKVLPAFE---LALSDVNSRPDLLPKTTLGLAIRDSECNPTqalLSACDLLAAAKV-----------------VAILGPG 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 149 WTTS----LKLAINSRNPKVFFGPFNPNLSDHDQFPYVYQVATEDTCLSHAMVSLMLHFRWTWIGLVITDDDQGIQLLTD 224
Cdd:cd06269    76 CSASaapvANLARHWDIPVLSYGATAPGLSDKSRYAYFLRTVPPDSKQADAMLALVRRLGWNKVVLIYSDDEYGEFGLEG 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 225 LREEMERHGMCLAFVNMIPETMQIYMTKAKiydNQIMTSSAKVVIIYgeMNSTLEVSFrrwaYLAAQRI--------WIT 296
Cdd:cd06269   156 LEELFQEKGGLITSRQSFDENKDDDLTKLL---RNLRDTEARVIILL--ASPDTARSL----MLEAKRLdmtskdyvWFV 226
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1958677300 297 TSQW-DVITTRKDFSLDFFHGTFTFAHHNVELPKFRHFM 334
Cdd:cd06269   227 IDGEaSSSDEHGDEARQAAEGAITVTLIFPVVKEFLKFS 265
PBP1_mGluR_groupII cd06375
ligand binding domain of the group II metabotropic glutamate receptor; Ligand binding domain ...
81-410 1.79e-09

ligand binding domain of the group II metabotropic glutamate receptor; Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes


Pssm-ID: 380598 [Multi-domain]  Cd Length: 462  Bit Score: 60.61  E-value: 1.79e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300  81 LLFATDEINRNPYLLPNMSfMFSRIVGMCEDTLGSLERkytpqsnSWKFI----------NYNC------GIQEVCDVQL 144
Cdd:cd06375    40 MLFAIDRINRDPHLLPGVR-LGVHILDTCSRDTYALEQ-------SLEFVrasltkvddsEYMCpddgsyAIQEDSPLPI 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 145 TGPSWTTSLKLAINSRN-------PKVFFGPFNPNLSDHDQFPYVYQVATEDTCLSHAMVSLMLHFRWTWIGLVITDDDQ 217
Cdd:cd06375   112 AGVIGGSYSSVSIQVANllrlfqiPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDY 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 218 GIQLLTDLREEMERHGMCLAFVNMIPETMqiymtKAKIYDNQI----MTSSAKVVIIYGEMNSTLEVsfrrwaYLAAQR- 292
Cdd:cd06375   192 GETGIEAFEQEARLRNICIATAEKVGRSA-----DRKSFDGVIrellQKPNARVVVLFTRSDDAREL------LAAAKRl 260
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 293 ----IWITTSQWDVITTRKDFSLDFFHGTFTFAHHNVELPKFRHFMQTM---NTSKYPvdisqsmlgW------NYFNCS 359
Cdd:cd06375   261 nasfTWVASDGWGAQESIVKGSEDVAEGAITLELASHPIPDFDRYFQSLtpyNNHRNP---------WfrdfweQKFQCS 331
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1958677300 360 ISKNSI--SKIDHFTLNNTLEWLAQHKFdMFlseegynLYNAVYAVAHTYHEL 410
Cdd:cd06375   332 LQNKSQaaSVSDKHLSIDSSNYEQESKI-MF-------VVNAVYAMAHALHNM 376
PBP1_mGluR_groupI cd06374
ligand binding domain of the group I metabotropic glutamate receptor; Ligand binding domain of ...
74-411 1.65e-07

ligand binding domain of the group I metabotropic glutamate receptor; Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.


Pssm-ID: 380597 [Multi-domain]  Cd Length: 474  Bit Score: 54.66  E-value: 1.65e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300  74 RYEVFLVLLfatDEINRNPYLLPNM--------SFMFSRI-----VGMCEDTLGSLE------RKYTPQSNSWKFINYNC 134
Cdd:cd06374    43 RVEAMFRTL---DKINKDPNLLPNItlgieirdSCWYSPValeqsIEFIRDSVASVEdekdtqNTPDPTPLSPPENRKPI 119
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 135 giqevcdVQLTGPSwttSLKLAINSRN-------PKVFFGPFNPNLSDHDQFPYVYQVATEDTCLSHAMVSLMLHFRWTW 207
Cdd:cd06374   120 -------VGVIGPG---SSSVTIQVQNllqlfhiPQIGYSATSIDLSDKSLYKYFLRVVPSDYLQARAMLDIVKRYNWTY 189
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 208 IGLVITDDDQGIQLLTDLREEMERHGMCLAfvnmipetmqiymTKAKIYDN-----------QIMT--SSAKVVIIYGEM 274
Cdd:cd06374   190 VSTVHTEGNYGESGIEAFKELAAEEGICIA-------------HSDKIYSNageeefdrllrKLMNtpNKARVVVCFCEG 256
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 275 NSTLevsfrrwAYLAAQRIWITTSQWDVI-----TTRKD----FSlDFFHGTFTFAHHNVELPKFRHFMQTM---NTSKY 342
Cdd:cd06374   257 ETVR-------GLLKAMRRLNATGHFLLIgsdgwADRKDvvegYE-DEAAGGITIKIHSPEVESFDEYYFNLkpeTNSRN 328
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958677300 343 PvdisqsmlgW------NYFNCSISKNSISKIDHFTLNNTLEWL-AQHKFDmflSEEGYnLYNAVYAVAHTYHELI 411
Cdd:cd06374   329 P---------WfrefwqHRFDCRLPGHPDENPYFKKCCTGEESLlGNYVQD---SKLGF-VINAIYAMAHALHRMQ 391
PBP1_mGluR_groupIII cd06376
ligand-binding domain of the group III metabotropic glutamate receptor; Ligand-binding domain ...
81-411 4.45e-07

ligand-binding domain of the group III metabotropic glutamate receptor; Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.


Pssm-ID: 380599 [Multi-domain]  Cd Length: 467  Bit Score: 53.27  E-value: 4.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300  81 LLFATDEINRNPYLLPNMSfMFSRIVGMCEDTLGSLERKYT-PQSnswkFINyncgiQEVCDVQ--------------LT 145
Cdd:cd06376    40 MLYALDQINSDPDLLPNVT-LGARILDTCSRDTYALEQSLTfVQA----LIQ-----KDTSDVRctngdppvfvkpekVV 109
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 146 GPSWTTSLKLAINSRN-------PKVFFGPFNPNLSDHDQFPYVYQVATEDTCLSHAMVSLMLHFRWTWIGLVITDDD-- 216
Cdd:cd06376   110 GVIGASASSVSIMVANilrlfqiPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGNyg 189
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 217 -QGIQLLTDLREEMerHGMCLAFVNMIPETMQIyMTKAKIYDNQIMTSSAKVVIIYG---EMNSTLEVSFRrwAYLAAQR 292
Cdd:cd06376   190 eKGVESFVQISREA--GGVCIAQSEKIPRERRT-GDFDKIIKRLLETPNARAVVIFAdedDIRRVLAAAKR--ANKTGHF 264
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 293 IWITTSQWDVITTRKDFSLDFFHGTFTFAHHNVELPKFRHFMQTMNTSKYPVDISQSMLGWNYFNCSISKNSISKIDHFT 372
Cdd:cd06376   265 LWVGSDSWGAKISPVLQQEDVAEGAITILPKRASIEGFDAYFTSRTLENNRRNVWFAEFWEENFNCKLTSSGSKKEDTLR 344
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1958677300 373 LNNTLEWLAQhkfDMFLSEEGYNLY--NAVYAVAHTYHELI 411
Cdd:cd06376   345 KCTGQERIGR---DSGYEQEGKVQFvvDAVYAMAHALHNMN 382
7tmC_GABA-B-like cd15047
gamma-aminobutyric acid type B receptor and related proteins, member of the class C family of ...
506-751 1.37e-06

gamma-aminobutyric acid type B receptor and related proteins, member of the class C family of seven-transmembrane G protein-coupled receptors; The type B receptor for gamma-aminobutyric acid, GABA-B, is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism. Also included in this group are orphan receptors, GPR156 and GPR158, which are closely related to the GABA-B receptor family.


Pssm-ID: 320175  Cd Length: 263  Bit Score: 50.64  E-value: 1.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 506 PLGMALGCTALCFSTLTVLILFTFLKYKDTPIVKANNcllsyillisLIFCFL----CSLLFIG---------HPNHITC 572
Cdd:cd15047     1 PLFIVFTVLSGIGILLALVFLIFNIKFRKNRVIKMSS----------PLFNNLillgCILCYISvilfglddsKPSSFLC 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 573 ILQQTTFGVFFTVAISTVLAKTITVvmaFKISTPGNRMKGMLTSGAPNLVIPICTLIQLVLCGIWLGTSPP-------FI 645
Cdd:cd15047    71 TARPWLLSIGFTLVFGALFAKTWRI---YRIFTNKKLKRIVIKDKQLLKIVGILLLIDIIILILWTIVDPLkptrvlvLS 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 646 DRDIQSEPGKTIVICNKGSIFAFH-FTLGYLDSLTLMSFAVAFLARNLPD-RFNEAKFLTFSM--LVFCSVWITFLPVYH 721
Cdd:cd15047   148 EISDDVKYEYVVHCCSSSNGIIWLgILLAYKGLLLLFGCFLAWKTRNVDIeEFNESKYIGISIynVLFLSVIGVPLSFVL 227
                         250       260       270
                  ....*....|....*....|....*....|
gi 1958677300 722 STKGKVMVVVEVFSILASSAGLLGCIFVPK 751
Cdd:cd15047   228 TDSPDTSYLIISAAILFCTTATLCLLFVPK 257
PBP1_GABAb_receptor cd06366
ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for ...
170-234 3.83e-06

ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA); Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb receptor or GABAbR). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha-i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.


Pssm-ID: 380589 [Multi-domain]  Cd Length: 404  Bit Score: 49.94  E-value: 3.83e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958677300 170 NPNLSDHDQFPYVYQVATEDTCLSHAMVSLMLHFRWTWIGLVITDDDQGIQLLTDLREEMERHGM 234
Cdd:cd06366   104 SPALSDRKRYPYFFRTVPSDTAFNPARIALLKHFGWKRVATIYQNDEVFSSTAEDLEELLEEANI 168
PBP1_ABC_transporter_GPCR_C-like cd04509
Family C of G-protein coupled receptors and their close homologs, the type 1 ...
71-273 4.34e-06

Family C of G-protein coupled receptors and their close homologs, the type 1 periplasmic-binding proteins of ATP-binding cassette transporter-like systems; This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type 1 periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, pheromone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts through either mGluRs or iGluRs. mGluRs subunits possess seven transmembrane segments and a large N-terminal extracellular domain. ABC-type leucine-isoleucine-valine binding protein (LIVBP) is a bacterial periplasmic binding protein that has homology with the amino-terminal domain of the glutamate-receptor ion channels (iGluRs). The extracellular regions of iGluRs are made of two PBP-like domains in tandem, a LIVBP-like domain that constitutes the N terminus (included in this model) followed by a domain related to lysine-arginine-ornithine-binding protein (LAOBP) that belongs to the type 2 periplasmic binding fold protein superfamily. The uncharacterized periplasmic components of various ABC-type transport systems are also included in this family.


Pssm-ID: 380490  Cd Length: 306  Bit Score: 49.23  E-value: 4.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300  71 PARRYEV--FLVLLFATDEINRNPYLLPNMSfMFSRIVGMCEDTLGSLErkytpQSNswKFINyNCGIQEVCDVQLTG-- 146
Cdd:cd04509    21 IVAQYGIqrFEAMEQALDDINADPNLLPNNT-LGIVIYDDCCDPKQALE-----QSN--KFVN-DLIQKDTSDVRCTNge 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 147 -PSWTTSLKL-----------AINSRN-------PKVFFGPFNPNLSDHDQFPYVYQVATEDTCLSHAMVSLMLHFRWTW 207
Cdd:cd04509    92 pPVFVKPEGIkgvighlcssvTIPVSNilelfgiPQITYAATAPELSDDRGYQLFLRVVPLDSDQAPAMADIVKEKVWQY 171
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 208 IGLVITDDDQGIQLLTDLREEMERHGMCLAFVNMIPETmqiymTKAKIYDNQIM----TSSAKVVIIYGE 273
Cdd:cd04509   172 VSIVHDEGQYGEGGARAFQDGLKKGGLCIAFSDGITAG-----EKTKDFDRLVArlkkENNIRFVVYFGY 236
7tmC_GPR158-like cd15293
orphan GPR158 and similar proteins, member of the class C family of seven-transmembrane G ...
508-756 1.21e-03

orphan GPR158 and similar proteins, member of the class C family of seven-transmembrane G protein-coupled receptors; This group includes orphan receptors GPR158, GPR158-like (also called GPR179) and similar proteins. These orphan receptors are closely related to the type B receptor for gamma-aminobutyric acid (GABA-B), which is activated by its endogenous ligand GABA, the principal inhibitory neurotransmitter. The functional GABA-B receptor is an obligatory heterodimer composed of two related subunits, GABA-B1, which is primarily involved in GABA ligand binding, and GABA-B2, which is responsible for both G-protein coupling and trafficking of the heterodimer to the plasma membrane. Activation of GABA-B couples to G(i/o)-type G proteins, which in turn modulate three major downstream effectors: adenylate cyclase, voltage-sensitive Ca2+ channels, and inwardly-rectifying K+ channels. Consequently, GABA-B receptor produces slow and sustained inhibitory responses by decreased neurotransmitter release via inhibition of Ca2+ channels and by postsynaptic hyperpolarization via the activation of K+ channels through the G-protein beta-gamma dimer. The GABA-B is expressed in both pre- and postsynaptic sites of glutamatergic and GABAergic neurons in the brain where it regulates synaptic activity. Thus, the GABA-B receptor agonist, baclofen, is used to treat muscle tightness and cramping caused by spasticity in multiple sclerosis patients. Moreover, GABA-B antagonists improves cognitive performance in mammals, while GABA-B agonists suppress cognitive behavior. In most of the class C family members, the extracellular Venus-flytrap domain in the N-terminus is connected to the seven-transmembrane (7TM) via a cysteine-rich domain (CRD). However, in the GABA-B receptor, the CRD is absent in both subunits and the Venus-flytrap ligand-binding domain is directly connected to the 7TM via a 10-15 amino acids linker, suggesting that GABA-B receptor may utilize a different activation mechanism.


Pssm-ID: 320420  Cd Length: 252  Bit Score: 41.43  E-value: 1.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 508 GMALGCTALCFSTLTVLILFTFlKYKDTPIVKANNclLSYILLISLIFCFLCSLLFIGH--PNHITCILQQTTFGVFFTV 585
Cdd:cd15293     4 IAVLAVQAICILLCLVLALVVF-RFRKVKVIKAAS--PILLELILFGALLLYFPVFILYfePSVFRCILRPWFRHLGFAI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 586 AISTVLAKTITVVMAFKISTpgNRmKGMLTSGApnLVIPICTLIQLVLC--GIWLGTSPPFIDRDIQSEP-GKTIVICnk 662
Cdd:cd15293    81 VYGALILKTYRILVVFRSRS--AR-RVHLTDRD--LLKRLGLIVLVVLGylAAWTAVNPPNVEVGLTLTSsGLKFNVC-- 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677300 663 gSIFAFHFTLgYLDSLTLMSFAV--AFLARNLPDRFNEAKFLTFSMLVFCSVWITFLPVYHSTKGK----VMVVVEVFSI 736
Cdd:cd15293   154 -SLDWWDYVM-AIAELLFLLWGVylCYAVRKAPSAFNESRYISLAIYNELLLSVIFNIIRFFLLPSlhpdLLFLLFFLHT 231
                         250       260
                  ....*....|....*....|
gi 1958677300 737 LASSAGLLGCIFVPKCYVIL 756
Cdd:cd15293   232 QLTVTVTLLLIFGPKFYLVL 251
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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