|
Name |
Accession |
Description |
Interval |
E-value |
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1-1052 |
0e+00 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 1775.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 1 MDSKTCESKKEDLLSS-GVISKGGSSSPFFVTSTHGAIIENTSSAGTLTQIPFFPKYEVELDSPRKSTSYPGKEHIERVL 79
Cdd:pfam15921 1 MEPKPCESNNEDLLSSsGITSNRGSSSPFFVSSIRGTIIENTSSTGTFTQIPIFPKYEVELDSPRKIIAYPGKEHIERVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 80 EEYSQQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEELRNQLQNTVHELEAAKSL 159
Cdd:pfam15921 81 EEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 160 KEDMLKDSSTQIEQLRKLMLSHEGVLQDIRSVLVDFEEASGKKICEHDSMSTMHFRSLGSAISKILRELDTEISFLKGRI 239
Cdd:pfam15921 161 KEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 240 FPVEDQLETLKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSVQSQLEIIQEQARNQNSMYMRQLS 319
Cdd:pfam15921 241 FPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 320 DLESTVSQLRSELRETKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQN 399
Cdd:pfam15921 321 DLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQN 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 400 KRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKNECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKV 479
Cdd:pfam15921 401 KRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 480 VEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALRLQMAEK 559
Cdd:pfam15921 481 VEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEK 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 560 DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNA 639
Cdd:pfam15921 561 DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNA 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 640 GSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKRNFRNKSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEG 719
Cdd:pfam15921 641 GSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEG 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 720 SDGHAMKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQER 799
Cdd:pfam15921 721 SDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQER 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 800 RLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNSSMKPRLLQPASVARSHSNVPSSQ 879
Cdd:pfam15921 801 RLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNSSMKPRLLQPASFTRTHSNVPSSQ 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 880 STASFLSHHSLKTNTLKEDPTRDLKQLLQELRSVINEEPAMPLSKTEEE--TPSLGALEDRVRDCITDSSLRSELCHRSN 957
Cdd:pfam15921 881 STASFLSHHSRKTNALKEDPTRDLKQLLQELRSVINEEPTVQLSKAEDKgrAPSLGALDDRVRDCIIESSLRSDICHSSS 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 958 NSLResTEGSKSSETLSREPVALHPGDLEDPSSCFTFTSTASPSVKISASRSFNSSPKKSPVHSLLTSSAEESVGSTPQY 1037
Cdd:pfam15921 961 NSLQ--TEGSKSSETCSREPVLLHAGELEDPSSCFTFPSTASPSVKNSASRSFHSSPKKSPVHSLLTSSAEGSIGSSSQY 1038
|
1050
....*....|....*
gi 1958677953 1038 RSAKPVHSSNSAKVS 1052
Cdd:pfam15921 1039 RSAKTIHSPDSVKDS 1053
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
75-813 |
1.00e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 102.06 E-value: 1.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 75 IERVLEEYSQQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRR---RESQSQEELRNQLQNTVH 151
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEeltAELQELEEKLEELRLEVS 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 152 ELEAAKSLKEDMLKDSSTQIEQLRKlmlsHEGVLQDIRSVLVDFEEASGKKICEHDSMSTmhfrslgsAISKILRELDTE 231
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQ----QKQILRERLANLERQLEELEAQLEELESKLD--------ELAEELAELEEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 232 ISFLKGRIFPVEDQLETLKSESQNkIELLLQQHQDRIEQL---ISEHEVEITGLTEKASSARSQANSVQSQLEI-IQEQA 307
Cdd:TIGR02168 346 LEELKEELESLEAELEELEAELEE-LESRLEELEEQLETLrskVAQLELQIASLNNEIERLEARLERLEDRRERlQQEIE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 308 RNQNSMYMRQLSDLESTVSQLRSELRETKRMYEDKIEELE---KQLVLANSELTEARTERDQFSQESGNLDDQLQKLLaD 384
Cdd:TIGR02168 425 ELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEelrEELEEAEQALDAAERELAQLQARLDSLERLQENLE-G 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 385 LHKREKELSLEKEQNK----RLWDR---DTGNSITIDHLRRELDDrNMEVQRLEALLKAMKNECQGQMERQM-------- 449
Cdd:TIGR02168 504 FSEGVKALLKNQSGLSgilgVLSELisvDEGYEAAIEAALGGRLQ-AVVVENLNAAKKAIAFLKQNELGRVTflpldsik 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 450 -AAIQGKN----ESLEKVSSLTAQLESTKEMLRKVVEEL-------------TAKKMNLESSERTVS------------- 498
Cdd:TIGR02168 583 gTEIQGNDreilKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvddldnaLELAKKLRPGYRIVTldgdlvrpggvit 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 499 ----DLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhLRNVQTECEALRLQMAEKDKVIEILRQQIENMT 574
Cdd:TIGR02168 663 ggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKE---LEELEEELEQLRKELEELSRQISALRKDLARLE 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 575 QlvgqhgrtagamqvEKAQLEKEINDRKLELQEFkilkdkkDAKIRELEARVSDLELEKVklvnagsERLRAVKDIRQER 654
Cdd:TIGR02168 740 A--------------EVEQLEERIAQLSKELTEL-------EAEIEELEERLEEAEEELA-------EAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 655 DQLLNEVKTSRTELNNLSEDYEVLKRNFRNKSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEgsdghamkvamGMQKQ 734
Cdd:TIGR02168 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE-----------SLAAE 860
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958677953 735 ITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALD 813
Cdd:TIGR02168 861 IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID 939
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
262-837 |
1.25e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 88.84 E-value: 1.25e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 262 QQHQDRIEQLISEHEVEITGLTEKASSARsQANSVQSQLEIIQEQARnqnsmyMRQLSDLESTVSQLRSELRETkrmyED 341
Cdd:COG1196 185 EENLERLEDILGELERQLEPLERQAEKAE-RYRELKEELKELEAELL------LLKLRELEAELEELEAELEEL----EA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 342 KIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELD 421
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 422 DRNMEVQRLEALLKAMKNECQgqmERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLT 501
Cdd:COG1196 334 ELEEELEELEEELEEAEEELE---EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 502 ASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALRLQMAEKDKVIEILRQQIENMTQLVGQHG 581
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 582 RTAGAMQVEKAQLE---------KEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKV-KLVNAGSERLRAVKDIR 651
Cdd:COG1196 491 ARLLLLLEAEADYEgflegvkaaLLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVvEDDEVAAAAIEYLKAAK 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 652 QERDQLLNEVKTSRTELNN-----------------LSEDYEVLKRNFRNKSEEMESTTNRLKMQLKSAQSELEQTRNTL 714
Cdd:COG1196 571 AGRATFLPLDKIRARAALAaalargaigaavdlvasDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVT 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 715 KTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVL 794
Cdd:COG1196 651 LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 1958677953 795 RSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLK 837
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
239-848 |
4.43e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.03 E-value: 4.43e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 239 IFPVEDQLETLKSESQnKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSVQSQLEIIQEQARNQNSmymrQL 318
Cdd:TIGR02168 195 LNELERQLKSLERQAE-KAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEE----KL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 319 SDLESTVSQLRSELRE-TKRMYE--DKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLE 395
Cdd:TIGR02168 270 EELRLEVSELEEEIEElQKELYAlaNEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 396 KEQnkrlwdrdtgnsitIDHLRRELDDRNMEVQRLEALLKAMKNECQG------QMERQMAAIQGKNESLE-KVSSLTAQ 468
Cdd:TIGR02168 350 KEE--------------LESLEAELEELEAELEELESRLEELEEQLETlrskvaQLELQIASLNNEIERLEaRLERLEDR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 469 LESTKEMLRKVVEELTAKKMnlESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNvqtE 548
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA---R 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 549 CEALRLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEkAQLEKEI-------------NDRKLELQEFKILKDKK 615
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVD-EGYEAAIeaalggrlqavvvENLNAAKKAIAFLKQNE 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 616 DAKIRELEARV------------------------SDLELEKVKLVNAGSERLRAVKdIRQERDQLLNEVKTSRTELNNL 671
Cdd:TIGR02168 570 LGRVTFLPLDSikgteiqgndreilkniegflgvaKDLVKFDPKLRKALSYLLGGVL-VVDDLDNALELAKKLRPGYRIV 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 672 SEDYEVLKRNF----------------RNKSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQI 735
Cdd:TIGR02168 649 TLDGDLVRPGGvitggsaktnssilerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 736 TAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKA 815
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDEL 808
|
650 660 670
....*....|....*....|....*....|...
gi 1958677953 816 SLQFAECQDIIQRQEQESVRLKLQHTLDVKELQ 848
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
340-668 |
2.17e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.72 E-value: 2.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 340 EDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRE 419
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 420 LDDRNMEVQRLEALLKAMKNEcQGQMERQMAAIQGKNESLEK-VSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVS 498
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAE-IEELEAQIEQLKEELKALREaLDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 499 DLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGD----HLRNVQTECEALRLQMAEKDKVIEILRQQIENMT 574
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAsleeALALLRSELEELSEELRELESKRSELRRELEELR 921
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 575 QLVGQHGRTAGAMQVEKAQLEKEINDR-KLELQEFKILKDKKDAKIRELEARVSDLELEKVKL--VNAGS-ERLRAVKDI 650
Cdd:TIGR02168 922 EKLAQLELRLEGLEVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRLKRLENKIKELgpVNLAAiEEYEELKER 1001
|
330
....*....|....*...
gi 1958677953 651 RQERDQLLNEVKTSRTEL 668
Cdd:TIGR02168 1002 YDFLTAQKEDLTEAKETL 1019
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
286-681 |
4.58e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 80.50 E-value: 4.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 286 ASSARSQANSVQSQLEIIQEQARNQNSMyMRQLSDLESTVSQLRSELRETKRMYEDK---IEELEKQLVLANSELTEART 362
Cdd:TIGR02169 666 ILFSRSEPAELQRLRERLEGLKRELSSL-QSELRRIENRLDELSQELSDASRKIGEIekeIEQLEQEEEKLKERLEELEE 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 363 ERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSItiDHLRRELDDRNMEVQRLEALLKAMknecq 442
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI--PEIQAELSKLEEEVSRIEARLREI----- 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 443 gqmerqmaaiqgkNESLEKVSSLTAQLESTKEMLRKVVEELTAKKmnlESSERTVSDLTASLQEKERAIEATNAEITKLR 522
Cdd:TIGR02169 818 -------------EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI---KSIEKEIENLNGKKEELEEELEELEAALRDLE 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 523 SRvdlklqeLQHLKNEGDHLRNvqtecealrlQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRK 602
Cdd:TIGR02169 882 SR-------LGDLKKERDELEA----------QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958677953 603 LELQEFKILKDKKdAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEvktsRTELNNLSEDYEVLKRN 681
Cdd:TIGR02169 945 EIPEEELSLEDVQ-AELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEE----RKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
417-794 |
5.53e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 5.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 417 RRELDDRNMEVQRLEALLKamknecqgQMERQMAAIQGKNESLEKVSSLTAQLE------STKEMLRKVvEELTAKKMNL 490
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILN--------ELERQLKSLERQAEKAERYKELKAELRelelalLVLRLEELR-EELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 491 ESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhLRNVQTECEALRLQMAEKDKVIEILRQQI 570
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE---ISRLEQQKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 571 EnmtqlvgQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDI 650
Cdd:TIGR02168 326 E-------ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 651 RQERDQLLNEVKTSRTELNNLSEDYEVLKRNF-RNKSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEGSDGHAmkvam 729
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA----- 473
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958677953 730 gmQKQITAKRGQIDALQSKVQFLEEavtsankekhfLKEEKSKLSQELSTVATEKNKMAGELEVL 794
Cdd:TIGR02168 474 --EQALDAAERELAQLQARLDSLER-----------LQENLEGFSEGVKALLKNQSGLSGILGVL 525
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
218-839 |
1.04e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.87 E-value: 1.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 218 GSAISKILRELDTEISFLKGRIFPVEDQLETLKSESQNkiellLQQHQDRIEQLISEHEVEITGLTEKASSA-RSQANSV 296
Cdd:TIGR02169 225 GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISE-----LEKRLEEIEQLLEELNKKIKDLGEEEQLRvKEKIGEL 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 297 QSQleiiQEQARNQNSMYMRQLSDLESTVSQLRSELRETKRmyedKIEELEKqlvlansELTEARTERDQFSQESGNLDD 376
Cdd:TIGR02169 300 EAE----IASLERSIAEKERELEDAEERLAKLEAEIDKLLA----EIEELER-------EIEEERKRRDKLTEEYAELKE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 377 QLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKNECQGQMERQMAAIQGKN 456
Cdd:TIGR02169 365 ELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 457 ESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLK-------- 528
Cdd:TIGR02169 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLkasiqgvh 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 529 --LQELQHLKNE---------GDHLRNVQTECEALRLQ--------------------MAEKDKVIEILR---------- 567
Cdd:TIGR02169 525 gtVAQLGSVGERyataievaaGNRLNNVVVEDDAVAKEaiellkrrkagratflplnkMRDERRDLSILSedgvigfavd 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 568 -----QQIEN--------------------------MTQLVGQHGRTAGAM----------QVEKAQLEKEINDRKLELQ 606
Cdd:TIGR02169 605 lvefdPKYEPafkyvfgdtlvvedieaarrlmgkyrMVTLEGELFEKSGAMtggsraprggILFSRSEPAELQRLRERLE 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 607 EFKILKDKKDAKIRELEARVSDLELEKvklvnagSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKRNFRNKS 686
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELSQEL-------SDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 687 EEMESTTNRL------KMQLKSAQSELEQ--TRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTS 758
Cdd:TIGR02169 758 SELKELEARIeeleedLHKLEEALNDLEArlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQE 837
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 759 ANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKL 838
Cdd:TIGR02169 838 LQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRK 917
|
.
gi 1958677953 839 Q 839
Cdd:TIGR02169 918 R 918
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
298-809 |
1.22e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 72.40 E-value: 1.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 298 SQLEIIQEQARNQNsmymRQLSDLESTVSQLRSELRETKRMYEdKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQ 377
Cdd:PRK03918 186 KRTENIEELIKEKE----KELEEVLREINEISSELPELREELE-KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 378 LQKLLADLHKREKELSLEKEQNKRLwDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKNECQGqMERQMAAIQGKNE 457
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEING-IEERIKELEEKEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 458 SLEKVSSLTAQLESTKEMLRKVV---EELTAKKMNLES-----SERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKL 529
Cdd:PRK03918 339 RLEELKKKLKELEKRLEELEERHelyEEAKAKKEELERlkkrlTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELK 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 530 QELQHLKNEGDHLRNVQTECEALRLQMAEKDK--VIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQE 607
Cdd:PRK03918 419 KEIKELKKAIEELKKAKGKCPVCGRELTEEHRkeLLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKL 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 608 FKILKDKKDAK-------IRELEARVSDLELEKVKLVNAGSERLRAVKDIRQERDqLLNEVKTSRTELNNLSEDYEVLKR 680
Cdd:PRK03918 499 KELAEQLKELEeklkkynLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE-LKKKLAELEKKLDELEEELAELLK 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 681 NFRNKS----EEMESTTNRLK------MQLKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKVq 750
Cdd:PRK03918 578 ELEELGfesvEELEERLKELEpfyneyLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY- 656
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 751 fleeavtsaNKEKHF-LKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 809
Cdd:PRK03918 657 ---------SEEEYEeLREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE 707
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
334-840 |
1.25e-11 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 68.98 E-value: 1.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 334 ETKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHkrEKELSLEKEQNKRLWDRDTGNSIti 413
Cdd:pfam05483 169 EKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDH--EKIQHLEEEYKKEINDKEKQVSL-- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 414 dhLRRELDDRNMEVQRLEALLKAMKNECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLESS 493
Cdd:pfam05483 245 --LLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIA 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 494 ERTVSDLT----ASLQEKERAIEATNAEITKLRSRV----DLKLQELQHLKNEGDHLR---------------------N 544
Cdd:pfam05483 323 TKTICQLTeekeAQMEELNKAKAAHSFVVTEFEATTcsleELLRTEQQRLEKNEDQLKiitmelqkksseleemtkfknN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 545 VQTECEALRLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEkaqlEKEINDRKLELQEFKILKDKKDAKIRELEA 624
Cdd:pfam05483 403 KEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAR----EKEIHDLEIQLTAIKTSEEHYLKEVEDLKT 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 625 RVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKRNFRNKSE-------EMESTTNRLK 697
Cdd:pfam05483 479 ELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEkemnlrdELESVREEFI 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 698 MQLKSAQSELEQTRNTLKTMEGSDGHAMKVAM-------GMQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEK 770
Cdd:pfam05483 559 QKGDEVKCKLDKSEENARSIEYEVLKKEKQMKilenkcnNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKV 638
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958677953 771 SKLSQELSTVATEKNKMAG----ELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQH 840
Cdd:pfam05483 639 NKLELELASAKQKFEEIIDnyqkEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKH 712
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
73-812 |
1.39e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.94 E-value: 1.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 73 EHIERVLEEYSQQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEELRNQLQNTVHE 152
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 153 LEAAKSLKEDmlkdSSTQIEQLRKLMLSHEGVLQDIRSVLVDFeeasgkkicehdsmstmhfRSLGSAISKILRELDTEI 232
Cdd:TIGR02169 331 IDKLLAEIEE----LEREIEEERKRRDKLTEEYAELKEELEDL-------------------RAELEEVDKEFAETRDEL 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 233 SFLKGRIFPVEDQLETLKSESQNKIELLLQQHQDrieqlISEHEVEITGLtekassaRSQANSVQSQLEIIQEQARNQNs 312
Cdd:TIGR02169 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEE-----LADLNAAIAGI-------EAKINELEEEKEDKALEIKKQE- 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 313 mymRQLSDLESTVSQLRSELRETKrmyeDKIEELEKQLVLANSELTEARTERDQFSQESGN-------LDDQLQ---KLL 382
Cdd:TIGR02169 455 ---WKLEQLAADLSKYEQELYDLK----EEYDRVEKELSKLQRELAEAEAQARASEERVRGgraveevLKASIQgvhGTV 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 383 ADLHKREKE--LSLEKEQNKRL----WDRDTGNSITIDHLRRE-------LDDRNMEVQRLEALLKAMKN---------E 440
Cdd:TIGR02169 528 AQLGSVGERyaTAIEVAAGNRLnnvvVEDDAVAKEAIELLKRRkagratfLPLNKMRDERRDLSILSEDGvigfavdlvE 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 441 CQGQMERQMAAIQGKN---ESLEKVSSLTAQ----------LESTKEMLRKVVEELTAKKMNLESSERtVSDLTASLQEK 507
Cdd:TIGR02169 608 FDPKYEPAFKYVFGDTlvvEDIEAARRLMGKyrmvtlegelFEKSGAMTGGSRAPRGGILFSRSEPAE-LQRLRERLEGL 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 508 ERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRN----VQTECEALRLQMAEKDKVIEILRQQIENMTQLVGQHGRT 583
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKeieqLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEAR 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 584 AGAMQVEKAQLEKEINDRKLELQEFKIlkDKKDAKIRELEARVSDLElekvklvnagsERLRAVkdirqerDQLLNEVKT 663
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDLEARLSHSRI--PEIQAELSKLEEEVSRIE-----------ARLREI-------EQKLNRLTL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 664 SRTELNNLSEDYEVLKRNFRNKSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEGSDGHamkvamgMQKQITAKRGQID 743
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD-------LKKERDELEAQLR 899
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958677953 744 ALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSqERRLKEKVANMEVAL 812
Cdd:TIGR02169 900 ELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS-LEDVQAELQRVEEEI 967
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
225-809 |
1.52e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 68.51 E-value: 1.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 225 LRELDTEISFLKGRIFPVEDQLETLKSESQNkiellLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSVQSQleiiQ 304
Cdd:TIGR04523 98 INKLNSDLSKINSEIKNDKEQKNKLEVELNK-----LEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQ----K 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 305 EQARNQNSMYMRQLSDLESTVSQLRSELREtKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 384
Cdd:TIGR04523 169 EELENELNLLEKEKLNIQKNIDKIKNKLLK-LELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTE 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 385 LHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKNECQgqmerqmaaiQGKNESL-EKVS 463
Cdd:TIGR04523 248 ISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKE----------QDWNKELkSELK 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 464 SLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR 543
Cdd:TIGR04523 318 NQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLE 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 544 NVQTECEALRLQMAEKDKVIE----ILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEIN--DRKLELQE---------F 608
Cdd:TIGR04523 398 SKIQNQEKLNQQKDEQIKKLQqekeLLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKnlDNTRESLEtqlkvlsrsI 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 609 KILKDKKDAKIRELEARVSDLElekvKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKRNFRNKSEE 688
Cdd:TIGR04523 478 NKIKQNLEQKQKELKSKEKELK----KLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFE 553
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 689 MesTTNRLKMQLKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTSANKekhflke 768
Cdd:TIGR04523 554 L--KKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKK------- 624
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1958677953 769 EKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 809
Cdd:TIGR04523 625 ENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEII 665
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
242-814 |
1.99e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 68.12 E-value: 1.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 242 VEDQLETLKSE---SQNKIELLLQQHQDRIEQL------ISEHEVEITGLTEKASSARSQANSVQSQLEIIQEQARNQNS 312
Cdd:TIGR04523 38 LEKKLKTIKNElknKEKELKNLDKNLNKDEEKInnsnnkIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 313 mymrQLSDLESTVSQLRSELRETKR---MYEDKIEELEKQLVLANS-------ELTEARTERDQFSQESGNLDDQLQKLL 382
Cdd:TIGR04523 118 ----QKNKLEVELNKLEKQKKENKKnidKFLTEIKKKEKELEKLNNkyndlkkQKEELENELNLLEKEKLNIQKNIDKIK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 383 ADLHKREKELSLEKEQNKR----------LWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKNECQGQMERQMAAI 452
Cdd:TIGR04523 194 NKLLKLELLLSNLKKKIQKnkslesqiseLKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQ 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 453 QGKNESLEKVSSLTAQLESTK---EMLRKVVEELTAK--KMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDL 527
Cdd:TIGR04523 274 KELEQNNKKIKELEKQLNQLKseiSDLNNQKEQDWNKelKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTN 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 528 KLQELQHLKNEgdhLRNVQTECEALRLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQE 607
Cdd:TIGR04523 354 SESENSEKQRE---LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 608 FKILKDKKDAKIRELEARVSDLELEKVKLVNAGSER-------LRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKR 680
Cdd:TIGR04523 431 LKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLetqlkvlSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEE 510
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 681 NFRNKSEEMESTTNRLKmQLKSAQSELEQTRNTLKTMEGSDGHAMKvAMGMQKQITAKRGQIDALQSKVQFLEEAVTSAN 760
Cdd:TIGR04523 511 KVKDLTKKISSLKEKIE-KLESEKKEKESKISDLEDELNKDDFELK-KENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQ 588
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 1958677953 761 KEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDK 814
Cdd:TIGR04523 589 ELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNK 642
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
417-799 |
2.56e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.17 E-value: 2.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 417 RRELDDRNMEVQRLEALLKAMKNE---CQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVE-ELTAKKMNLES 492
Cdd:TIGR02169 155 RRKIIDEIAGVAEFDRKKEKALEEleeVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREyEGYELLKEKEA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 493 SERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLrnvqTECEALRLQmaekdKVIEILRQQIEN 572
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL----GEEEQLRVK-----EKIGELEAEIAS 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 573 MTQLVGQHGRTAGAMQVEKAQLEKEIndrklelqefkilkDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQ 652
Cdd:TIGR02169 306 LERSIAEKERELEDAEERLAKLEAEI--------------DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 653 ERDQLLNEVKTSRTELNNLSEDYEVLKRnfrnKSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEGsdghamKVAmGMQ 732
Cdd:TIGR02169 372 ELEEVDKEFAETRDELKDYREKLEKLKR----EINELKRELDRLQEELQRLSEELADLNAAIAGIEA------KIN-ELE 440
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958677953 733 KQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQER 799
Cdd:TIGR02169 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVR 507
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
72-718 |
1.59e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 1.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 72 KEHIERV---LEEYSQQVKDLQR---------RLNEsnELHEKQKFYLRQSVIDLQTKLQEMQmerdamADIRRRESQsQ 139
Cdd:COG1196 185 EENLERLediLGELERQLEPLERqaekaeryrELKE--ELKELEAELLLLKLRELEAELEELE------AELEELEAE-L 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 140 EELRNQLQNTVHELEAAKSLKEDMLKDSSTQIEQLRKLMLSHEGVLQDIRSVLVDFEEASGKKIcehdsmstmhfrslgs 219
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE---------------- 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 220 AISKILRELDTEISFLKGRIfpveDQLETLKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSVQSQ 299
Cdd:COG1196 320 ELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 300 LEIIQEQARNQnsmymRQLSDLEstvsQLRSELRETKRMYEDKIEELEKQLVLANSELTEARTERDQfsqesgnLDDQLQ 379
Cdd:COG1196 396 AELAAQLEELE-----EAEEALL----ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE-------LEEEEE 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 380 KLLADLHKREKELSLEKEQnkrlwdrdtgnsitIDHLRRELDDRnmeVQRLEALLKAMKNEcqgQMERQMAAIQGKNESL 459
Cdd:COG1196 460 ALLELLAELLEEAALLEAA--------------LAELLEELAEA---AARLLLLLEAEADY---EGFLEGVKAALLLAGL 519
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 460 EKVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIE-ATNAEITKLRSRVDLKLQELQHLKNE 538
Cdd:COG1196 520 RGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGrATFLPLDKIRARAALAAALARGAIGA 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 539 GDHLRNVQTECEALRLQ-----MAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKd 613
Cdd:COG1196 600 AVDLVASDLREADARYYvlgdtLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAE- 678
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 614 kkdAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKRNFRNKSEEMESTT 693
Cdd:COG1196 679 ---AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
650 660
....*....|....*....|....*
gi 1958677953 694 NRLKMQLKSAQSELEQTRNTLKTME 718
Cdd:COG1196 756 LPEPPDLEELERELERLEREIEALG 780
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
222-718 |
7.47e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.16 E-value: 7.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 222 SKILRELDTEISFLKgRIFPVEDQLETLKSESQNKIElllqqhqdRIEQLISEHEVEITGLTEKASSARSQANSVQSQLE 301
Cdd:PRK03918 168 GEVIKEIKRRIERLE-KFIKRTENIEELIKEKEKELE--------EVLREINEISSELPELREELEKLEKEVKELEELKE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 302 IIqEQARNQNSMYMRQLSDLESTVSQLRSELRETKRMYED---------KIEELEKQLVLANSELTEARTERDQFSQESG 372
Cdd:PRK03918 239 EI-EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEleekvkelkELKEKAEEYIKLSEFYEEYLDELREIEKRLS 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 373 NLDDQ---LQKLLADLHKREKELSLEKEQNKRLWDRDtgNSITIDHlrRELDDRNMEVQRLEALLKAMKNECQGQMERQM 449
Cdd:PRK03918 318 RLEEEingIEERIKELEEKEERLEELKKKLKELEKRL--EELEERH--ELYEEAKAKKEELERLKKRLTGLTPEKLEKEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 450 AAIQGKNESLE----KVSSLTAQLESTKEMLRKVVEELTAKK---------MNLESSERTVSDLTASLQEKERAIEATNA 516
Cdd:PRK03918 394 EELEKAKEEIEeeisKITARIGELKKEIKELKKAIEELKKAKgkcpvcgreLTEEHRKELLEEYTAELKRIEKELKEIEE 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 517 EITKLRSR------VDLKLQELQHLKNEGDHLRNVQTECEALRLQMAEKDKviEILRQQIENMTQLVGQHGR------TA 584
Cdd:PRK03918 474 KERKLRKElrelekVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKA--EEYEKLKEKLIKLKGEIKSlkkeleKL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 585 GAMQVEKAQLEKEINDRKLELQEF-KILKDKKDAKIRELEARVSDLEL---EKVKLVNAGSE---RLRAVKDIRQERDQL 657
Cdd:PRK03918 552 EELKKKLAELEKKLDELEEELAELlKELEELGFESVEELEERLKELEPfynEYLELKDAEKElerEEKELKKLEEELDKA 631
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958677953 658 LNEVKTSRTELNNLSEDYEVLKRNF--------RNKSEEMESTTNRLKMQLKSAQSELEQTRNTLKTME 718
Cdd:PRK03918 632 FEELAETEKRLEELRKELEELEKKYseeeyeelREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK 700
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
225-606 |
9.85e-10 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 62.01 E-value: 9.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 225 LRELDTEISFLKGRIFPVEDQLETLKSESQNKIEL--LLQQHQDRIEQLISEHEveitGLTEKASSARSQANSVQSQLEI 302
Cdd:pfam19220 19 LEDLRSLKADFSQLIEPIEAILRELPQAKSRLLELeaLLAQERAAYGKLRRELA----GLTRRLSAAEGELEELVARLAK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 303 IQEQARNQnsmymrqlsdlESTVSQLRSELRETkrmyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL 382
Cdd:pfam19220 95 LEAALREA-----------EAAKEELRIELRDK----TAQAEALERQLAAETEQNRALEEENKALREEAQAAEKALQRAE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 383 ADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDD----RNMEVQRLEALLKAMKNEcQGQMERQMAAIQGKNES 458
Cdd:pfam19220 160 GELATARERLALLEQENRRLQALSEEQAAELAELTRRLAEletqLDATRARLRALEGQLAAE-QAERERAEAQLEEAVEA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 459 LE--------KVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRvdlkLQ 530
Cdd:pfam19220 239 HRaeraslrmKLEALTARAAATEQLLAEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQ----FQ 314
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958677953 531 ELQHLKNEGDHlrnvqtECEALRLQMAEKDKVIEILRQQIENMTQLVGQHGRtagAMQVEKAQLEKEINDRKLELQ 606
Cdd:pfam19220 315 EMQRARAELEE------RAEMLTKALAAKDAALERAEERIASLSDRIAELTK---RFEVERAALEQANRRLKEELQ 381
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
132-521 |
1.43e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 1.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 132 RRRESQSQEELRNQLQNTVHELEAAKSLKEDMLKDSSTQIEQLRKLMLShegvlqdirsvlvdfeeasgkkicehdsmst 211
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE------------------------------- 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 212 mhfrslgsaISKILRELDTEISFLKGRIFPVEDQLETLKSESQNKIELLLQQHQDRIE--QLISEHEVEITGLTEKASSA 289
Cdd:TIGR02168 724 ---------LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEaeEELAEAEAEIEELEAQIEQL 794
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 290 RSQANSVQSQLEIIQEQARNQNsmymRQLSDLESTVSQLRSELRETKRMYED---KIEELEKQLVLANSELTEARTERDQ 366
Cdd:TIGR02168 795 KEELKALREALDELRAELTLLN----EEAANLRERLESLERRIAATERRLEDleeQIEELSEDIESLAAEIEELEELIEE 870
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 367 FSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEAL---LKAMKNEcQG 443
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRidnLQERLSE-EY 949
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 444 QMERQMAA-----IQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAE 517
Cdd:TIGR02168 950 SLTLEEAEalenkIEDDEEEARrRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDRE 1029
|
....
gi 1958677953 518 ITKL 521
Cdd:TIGR02168 1030 ARER 1033
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
284-816 |
1.68e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.98 E-value: 1.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 284 EKASSARSQANSVQSQLEIIQEQARNQnsMYMRQLSDLESTVSQLRSELRETkrmyEDKIEELEKQLVLANSELTEAR-- 361
Cdd:PRK02224 169 ERASDARLGVERVLSDQRGSLDQLKAQ--IEEKEEKDLHERLNGLESELAEL----DEEIERYEEQREQARETRDEADev 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 362 -TERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEAL---LKAM 437
Cdd:PRK02224 243 lEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARreeLEDR 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 438 KNECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKkmnLESSERTVSDltaslqeKERAIEATNAE 517
Cdd:PRK02224 323 DEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESE---LEEAREAVED-------RREEIEELEEE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 518 ITKLRSRVDLKLQELQHLKnegDHLRNVQTECEALRLQMAEKDKVIEILRQQIENMTQLV--------GQ------HGRT 583
Cdd:PRK02224 393 IEELRERFGDAPVDLGNAE---DFLEELREERDELREREAELEATLRTARERVEEAEALLeagkcpecGQpvegspHVET 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 584 AGAMQVEKAQLEKEINDRKLELQEfkiLKDKKDA--KIRELEARVSDLElEKVKLVnagsERLRAVKDIRQERDQLlnEV 661
Cdd:PRK02224 470 IEEDRERVEELEAELEDLEEEVEE---VEERLERaeDLVEAEDRIERLE-ERREDL----EELIAERRETIEEKRE--RA 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 662 KTSRTELNNLSEDYEVLKRNFRNKSEEMESTTNRLKmQLKSAQSELEQTRNTLKTMEGS---------------DGHAMK 726
Cdd:PRK02224 540 EELRERAAELEAEAEEKREAAAEAEEEAEEAREEVA-ELNSKLAELKERIESLERIRTLlaaiadaedeierlrEKREAL 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 727 VAMGMQK--QITAKRGQIDALQSKVQflEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAG----------ELEVL 794
Cdd:PRK02224 619 AELNDERreRLAEKRERKRELEAEFD--EARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAeigaveneleELEEL 696
|
570 580
....*....|....*....|..
gi 1958677953 795 RSQERRLKEKVANMEVALDKAS 816
Cdd:PRK02224 697 RERREALENRVEALEALYDEAE 718
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
418-708 |
2.54e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 2.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 418 RELDDRNMEVQRLEALLKAMKNECQGQMERQMAAIQgknESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTV 497
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELS---DASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 498 SDLTASLQEKERAIEATNAEITKLRSRV-DLKLQELQH-LKNEGDHLRNVQTECEALRLQMAEKDKVIEILRQQIENMTQ 575
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALnDLEARLSHSrIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 576 LVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQERD 655
Cdd:TIGR02169 834 EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1958677953 656 QLLNEVKTSRTELNNLSEDYEVLKRNFRNKSEEMESTTN--RLKMQLKSAQSELE 708
Cdd:TIGR02169 914 KKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSleDVQAELQRVEEEIR 968
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
225-779 |
3.20e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 3.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 225 LRELDTEISFLKGRIFPVEDQLETLKSEsqnkiELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSVQSQLEIIQ 304
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAE-----EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 305 EQARNQNSMYMRQLSDLESTVSQLRSELRETKRMyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 384
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEA-EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 385 LHKREKELSLEKEQNKRLwdrdtgnSITIDHLRRELDDRNMEVQRLEALLKAMKNECQGQMERQMAAIQGKNESLEKVSS 464
Cdd:COG1196 416 LERLEEELEELEEALAEL-------EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 465 LTAQLESTKEMLRKVVEEL-TAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR 543
Cdd:COG1196 489 AAARLLLLLEAEADYEGFLeGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 544 NVQTECEALRLQMAEKDKVIEILRQQIENMTQLVG----QHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKI 619
Cdd:COG1196 569 AKAGRATFLPLDKIRARAALAAALARGAIGAAVDLvasdLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 620 RELEARVsdLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKRNFRNKSEEMESTTNRLKMQ 699
Cdd:COG1196 649 VTLEGEG--GSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 700 LKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKVQFL-------EEAVTSANKEKHFLKEEKSK 772
Cdd:COG1196 727 EEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALgpvnllaIEEYEELEERYDFLSEQRED 806
|
....*..
gi 1958677953 773 LSQELST 779
Cdd:COG1196 807 LEEARET 813
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
201-670 |
6.32e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.03 E-value: 6.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 201 KKICEHDSMST--MHFRSLGSAISKILRELDTEISFLKGRIFPVEDQLETLKSEsQNKIELLLQQHQDRIEQ-------- 270
Cdd:TIGR04523 208 KKIQKNKSLESqiSELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE-QNKIKKQLSEKQKELEQnnkkikel 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 271 --LISEHEVEITGLTEKASS-----ARSQANSVQSQLEIIQEQARNQN---SMYMRQLSDLESTVSQLRSELRETKRMYE 340
Cdd:TIGR04523 287 ekQLNQLKSEISDLNNQKEQdwnkeLKSELKNQEKKLEEIQNQISQNNkiiSQLNEQISQLKKELTNSESENSEKQRELE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 341 DKIEELEK----------QLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQN-------KRLW 403
Cdd:TIGR04523 367 EKQNEIEKlkkenqsykqEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIiknnseiKDLT 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 404 DRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKNEcqgqMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEEL 483
Cdd:TIGR04523 447 NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQN----LEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 484 TAKKMNLESserTVSDLTASLQEKERAIEATNAEITK--LRSRVDLKLQELQHLKNEGDHLRNVQTECEALrlqMAEKDK 561
Cdd:TIGR04523 523 KEKIEKLES---EKKEKESKISDLEDELNKDDFELKKenLEKEIDEKNKEIEELKQTQKSLKKKQEEKQEL---IDQKEK 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 562 VIEILRQQIENMTQLVgqhgrtagamqvekAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGS 641
Cdd:TIGR04523 597 EKKDLIKEIEEKEKKI--------------SSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWP 662
|
490 500
....*....|....*....|....*....
gi 1958677953 642 ERLRAVKDIRQERDQLLNEVKTSRTELNN 670
Cdd:TIGR04523 663 EIIKKIKESKTKIDDIIELMKDWLKELSL 691
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
296-518 |
9.28e-09 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 59.65 E-value: 9.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 296 VQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELRETKR------------MYEDKIEELEKQLVLANSELTEARTE 363
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQknglvdlseeakLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 364 RDQFSQESGNLDDQLQKLLAD-----LHKREKELSLEKEQnkrlwdrdtgnsitidhLRRELDDRNMEVQRLEALLKAMK 438
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSpviqqLRAQLAELEAELAE-----------------LSARYTPNHPDVIALRAQIAALR 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 439 NECQGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVE---ELTAKKMNLESSERTVSDLTASLQEK--ERAIE 512
Cdd:COG3206 305 AQLQQEAQRILASLEAELEALQaREASLQAQLAQLEARLAELPEleaELRRLEREVEVARELYESLLQRLEEArlAEALT 384
|
....*.
gi 1958677953 513 ATNAEI 518
Cdd:COG3206 385 VGNVRV 390
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
72-694 |
1.55e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.90 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 72 KEHIERVLEEYSQQVKDLQRrlnesnelhekqkfyLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEELRNQLQNTVH 151
Cdd:PRK02224 236 RDEADEVLEEHEERREELET---------------LEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLA 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 152 ELEaakslkedmlkdsstqieqlrklmlshegvlqdirsvlvdfeeasgkkicehdsmstmhfrslgsaiskiLRELDTE 231
Cdd:PRK02224 301 EAG----------------------------------------------------------------------LDDADAE 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 232 IsflkgrifpVEDQLETLKSEsqnkielllqqhQDRIEQLISEHEVEITGLTEKASSARSQANSVQSQLEIIQEQARNQN 311
Cdd:PRK02224 311 A---------VEARREELEDR------------DEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 312 SmymrQLSDLESTVSQLRSELRETkrmyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKE 391
Cdd:PRK02224 370 S----ELEEAREAVEDRREEIEEL----EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 392 LslekEQNKRLWDR----DTGNSITIDHLRRELDDRNMEVQRLEALLKamknecqgQMERQMAAIQGKNESLEKVSSLTA 467
Cdd:PRK02224 442 V----EEAEALLEAgkcpECGQPVEGSPHVETIEEDRERVEELEAELE--------DLEEEVEEVEERLERAEDLVEAED 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 468 QLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQE-------LQHLKNEGD 540
Cdd:PRK02224 510 RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEvaelnskLAELKERIE 589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 541 HLRNVQTECEALrlqmAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLE-----LQEFKILKDKK 615
Cdd:PRK02224 590 SLERIRTLLAAI----ADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEearedKERAEEYLEQV 665
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 616 DAKIRELEARVSDLElekvKLVNAGSERLRAVKDIRQERDQLLNEVKTSRT---ELNNLSEDYEVLKRNFRNKS-EEMES 691
Cdd:PRK02224 666 EEKLDELREERDDLQ----AEIGAVENELEELEELRERREALENRVEALEAlydEAEELESMYGDLRAELRQRNvETLER 741
|
...
gi 1958677953 692 TTN 694
Cdd:PRK02224 742 MLN 744
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
466-691 |
3.90e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.70 E-value: 3.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 466 TAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNV 545
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 546 QtecEALRLQMAEKDKVIEILRQQIENMTQL----VGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRE 621
Cdd:COG4942 99 L---EAQKEELAELLRALYRLGRQPPLALLLspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 622 LEARVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKRNFRNKSEEMES 691
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
107-797 |
5.29e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 57.36 E-value: 5.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 107 LRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEELRNQLQNTVHELEAAKSLKE--DMLKDSSTQIEQLRKLMLSHEGV 184
Cdd:TIGR00606 191 LRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENelDPLKNRLKEIEHNLSKIMKLDNE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 185 LQDIRSVLVDFEEASGkkicEHDSMSTMHFRSLGSAISKILRELDTEISFLKGRIFPVEDQLETLKSESQnkielLLQQH 264
Cdd:TIGR00606 271 IKALKSRKKQMEKDNS----ELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERR-----LLNQE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 265 QDRIEQLISEHEVEITGLTEKASSARSQANSVQSQLEI--------IQEQARNQNSMYMRQLSDLESTVSQLRSELRETK 336
Cdd:TIGR00606 342 KTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELdgfergpfSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 337 RMYEDKIEELEKQL-----------VLANSELTEARTERDQFSQESGNLDD------QLQKLLADLHKREKELSLEKEQN 399
Cdd:TIGR00606 422 RLKQEQADEIRDEKkglgrtielkkEILEKKQEELKFVIKELQQLEGSSDRileldqELRKAERELSKAEKNSLTETLKK 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 400 KRLWDRDtgNSITIDHLRRELDDRNMEVQRLEALLKAMKNECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEmLRKV 479
Cdd:TIGR00606 502 EVKSLQN--EKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQ-LEDW 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 480 VEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALRLQMAEK 559
Cdd:TIGR00606 579 LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAML 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 560 DKVIEILRQQIENMTqlvgQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKkdaKIRELEARVSDLELEK----VK 635
Cdd:TIGR00606 659 AGATAVYSQFITQLT----DENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPD---KLKSTESELKKKEKRRdemlGL 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 636 LVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKR-NFRNKSEEMEST----TNRLKMQLKSAQSELEQT 710
Cdd:TIGR00606 732 APGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTiMPEEESAKVCLTdvtiMERFQMELKDVERKIAQQ 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 711 RNTLKTMEGSdghamKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQE---LSTVATEKNKM 787
Cdd:TIGR00606 812 AAKLQGSDLD-----RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEklqIGTNLQRRQQF 886
|
730
....*....|
gi 1958677953 788 AGELEVLRSQ 797
Cdd:TIGR00606 887 EEQLVELSTE 896
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
79-487 |
6.09e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 6.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 79 LEEYSQQVKDLQRRLN----ESNELhEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEELRNQLQNTVHELE 154
Cdd:TIGR02169 676 LQRLRERLEGLKRELSslqsELRRI-ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 155 AAKSLKEDMlkdsstqieqlrklmlshEGVLQDIRSVLVDFEEASGkKICEHDSMSTMhfrslgSAISKILRELDTEISF 234
Cdd:TIGR02169 755 NVKSELKEL------------------EARIEELEEDLHKLEEALN-DLEARLSHSRI------PEIQAELSKLEEEVSR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 235 LKGRIFPVEDQLetlksesqNKIELLLQQHQDRIEQLisehEVEITGLTEKASSARSQANSVQSQLEIIQEQARNqnsmy 314
Cdd:TIGR02169 810 IEARLREIEQKL--------NRLTLEKEYLEKEIQEL----QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEE----- 872
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 315 mrqlsdLESTVSQLRSELRETKRmyedKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSL 394
Cdd:TIGR02169 873 ------LEAALRDLESRLGDLKK----ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 395 EKEQNKRLWDrdtgnsitidhlrreLDDRNMEVQRLEALLKAMKnecqgqmERQMAAIQGKNESLEKVSSLTAQ---LES 471
Cdd:TIGR02169 943 DEEIPEEELS---------------LEDVQAELQRVEEEIRALE-------PVNMLAIQEYEEVLKRLDELKEKrakLEE 1000
|
410
....*....|....*.
gi 1958677953 472 TKEMLRKVVEELTAKK 487
Cdd:TIGR02169 1001 ERKAILERIEEYEKKK 1016
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
583-816 |
7.21e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 7.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 583 TAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLElekvklvNAGSERLRAVKDIRQERDQLLNEVK 662
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE-------RRIAALARRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 663 TSRTELNNLSEDYEVLKRNFRNKSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQI 742
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958677953 743 DALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKAS 816
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
266-807 |
7.94e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 7.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 266 DRIEQLIsEHEVEITGLTEKASSARSQANsvqsQLEIIQEQARNQNSMyMRQLSDLESTVSQLRSELRETKrmyedkIEE 345
Cdd:COG4913 225 EAADALV-EHFDDLERAHEALEDAREQIE----LLEPIRELAERYAAA-RERLAELEYLRAALRLWFAQRR------LEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 346 LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADL--HKREKELSLEKEqnkrlwdrdtgnsitIDHLRRELDDR 423
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQIrgNGGDRLEQLERE---------------IERLERELEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 424 NMEVQRLEALLKAMKnecqgqmerqMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTakkmnlessertvsDLTAS 503
Cdd:COG4913 358 ERRRARLEALLAALG----------LPLPASAEEFAALRAEAAALLEALEEELEALEEALA--------------EAEAA 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 504 LQEKERAIEATNAEITKLRSR---VDLKLQEL-----QHLKNEGDHLR------NVQTECE-------------ALRLQM 556
Cdd:COG4913 414 LRDLRRELRELEAEIASLERRksnIPARLLALrdalaEALGLDEAELPfvgeliEVRPEEErwrgaiervlggfALTLLV 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 557 AEK--DKVIEILRqQIENMTQLVGQH-------------------------------------GRTAGAMQVEKA-QLEK 596
Cdd:COG4913 494 PPEhyAAALRWVN-RLHLRGRLVYERvrtglpdperprldpdslagkldfkphpfrawleaelGRRFDYVCVDSPeELRR 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 597 ------------------EINDRKLELQEFkILKDKKDAKIRELEARVSDLElekvklvnagsERLRAVKDIRQERDQLL 658
Cdd:COG4913 573 hpraitragqvkgngtrhEKDDRRRIRSRY-VLGFDNRAKLAALEAELAELE-----------EELAEAEERLEALEAEL 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 659 NEVKTSRTELNNLSE------DYEVLKRNFRNKSEEMESTTN------RLKMQLKSAQSELEQTRNTLKTMEGSDGhamk 726
Cdd:COG4913 641 DALQERREALQRLAEyswdeiDVASAEREIAELEAELERLDAssddlaALEEQLEELEAELEELEEELDELKGEIG---- 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 727 vamGMQKQITAKRGQIDALQSKvqfLEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVA 806
Cdd:COG4913 717 ---RLEKELEQAEEELDELQDR---LEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELE 790
|
.
gi 1958677953 807 N 807
Cdd:COG4913 791 R 791
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
363-832 |
8.12e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.31 E-value: 8.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 363 ERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKNECQ 442
Cdd:COG4717 54 EADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 443 G-QMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEEL-----TAKKMNLESSERTVSDLTASLQEKERAIEATNA 516
Cdd:COG4717 134 LeALEAELAELPERLEELEERLEELRELEEELEELEAELAELqeeleELLEQLSLATEEELQDLAEELEELQQRLAELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 517 EITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALRLQMAE----------------KDKVIEILRQQIENMTQLVGQH 580
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaallallglggsllslILTIAGVLFLVLGLLALLFLLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 581 GRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDL--ELEKVKLVNAGSERLRA---VKDIRQERD 655
Cdd:COG4717 294 AREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELldRIEELQELLREAEELEEelqLEELEQEIA 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 656 QLLNEVK-TSRTELNNLSEDYEvlkrNFRNKSEEMESTTNRLKMQLKSAQSELEQTrntlktmegsdghamkvamgmqkq 734
Cdd:COG4717 374 ALLAEAGvEDEEELRAALEQAE----EYQELKEELEELEEQLEELLGELEELLEAL------------------------ 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 735 itakrgQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATEknkmaGELEVLRSQERRLKEKVAnmEVALDK 814
Cdd:COG4717 426 ------DEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED-----GELAELLQELEELKAELR--ELAEEW 492
|
490 500
....*....|....*....|
gi 1958677953 815 ASLQFAEC--QDIIQRQEQE 832
Cdd:COG4717 493 AALKLALEllEEAREEYREE 512
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
225-573 |
9.80e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 9.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 225 LRELDTEISFLKGRIFPVEDQLETLKSESQNKIELL--LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSVQSQLEI 302
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELeqLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 303 IQEQARNQNSMymrqlsdlestvsqlRSELRETKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL 382
Cdd:TIGR02168 759 LEAEIEELEER---------------LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 383 ADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKNEcQGQMERQMAAIQGKNESLE-- 460
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE-RASLEEALALLRSELEELSee 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 461 ------KVSSLTAQLESTKEMLRKVVEELTAKK---------------MNLESSERTVSDLTASLQEKERAIEATNAEIT 519
Cdd:TIGR02168 903 lrelesKRSELRRELEELREKLAQLELRLEGLEvridnlqerlseeysLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1958677953 520 KLrSRVDLK-LQELQHLKNEGDHLRNvqtecealrlQMAEKDKVIEILRQQIENM 573
Cdd:TIGR02168 983 EL-GPVNLAaIEEYEELKERYDFLTA----------QKEDLTEAKETLEEAIEEI 1026
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
72-704 |
1.01e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 56.34 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 72 KEHIERVLEEYSQQVKDLQRRlneSNELHEKQKfYLRQSVIDLQTKL-------QEMQMER-DAMADIRRRESQ--SQEE 141
Cdd:pfam01576 70 KQELEEILHELESRLEEEEER---SQQLQNEKK-KMQQHIQDLEEQLdeeeaarQKLQLEKvTTEAKIKKLEEDilLLED 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 142 LRNQLQNTVHELEAAKSLKEDMLKDSSTQIEQLRKLMLSHEGVLQDIRSVLVdfEEASGKKICEhdsmstmhfrslgsai 221
Cdd:pfam01576 146 QNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLK--KEEKGRQELE---------------- 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 222 sKILRELDTEISFLKGRIFPVEDQLETLKSESQNKiELLLQQHQDRIEQ----------LISEHEVEITGLTEKASSARS 291
Cdd:pfam01576 208 -KAKRKLEGESTDLQEQIAELQAQIAELRAQLAKK-EEELQAALARLEEetaqknnalkKIRELEAQISELQEDLESERA 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 292 QANSVQSQ-------LEIIQ---EQARNQNSMYMRQLSDLESTVSQLRSELRETKRMYEDKIEELEKQLVLANSELTEar 361
Cdd:pfam01576 286 ARNKAEKQrrdlgeeLEALKtelEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTE-- 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 362 tERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKNEC 441
Cdd:pfam01576 364 -QLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSEL 442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 442 QGqMERQMAAIQGKNESLEK-VSSLTAQLESTKEMLrkvvEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITK 520
Cdd:pfam01576 443 ES-VSSLLNEAEGKNIKLSKdVSSLESQLQDTQELL----QEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVER 517
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 521 LRSRVDLKLQELQHlKNEGDHL---------RNVQTECEALRLQMAEK-------DKVIEILRQQIENMTQLVGQHGRTA 584
Cdd:pfam01576 518 QLSTLQAQLSDMKK-KLEEDAGtlealeegkKRLQRELEALTQQLEEKaaaydklEKTKNRLQQELDDLLVDLDHQRQLV 596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 585 GAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNevktS 664
Cdd:pfam01576 597 SNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVS----S 672
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 1958677953 665 RTELNNLSEDYEVLKRNFRNKSEEMESTTNRLKMQLKSAQ 704
Cdd:pfam01576 673 KDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATE 712
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
73-639 |
1.72e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 1.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 73 EHIERVLEEYSQQVKDLQRRLNESNElhekQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEELRNQLQN---T 149
Cdd:COG1196 263 AELEAELEELRLELEELELELEEAQA----EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEEleeE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 150 VHELEAAKSLKEDMLKDSSTQIEQLRKLMLSHEGVLQDIRSVLVDFEEASgkkicehdsmstMHFRSLGSAISKILRELD 229
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL------------LEALRAAAELAAQLEELE 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 230 TEISFLKGRIFPVEDQLETLKSESQNKIELLLQQHQDRIEQL--ISEHEVEITGLTEKASSARSQANSVQSQLEIIQEQA 307
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAeeEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 308 RNQNSMYMRQLSDLESTVSQLRSELRETKRMYEDKIEELEKQLVLANSEL-TEARTERDQFSQESGNLDDQLQKLLADLH 386
Cdd:COG1196 487 AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYeAALEAALAAALQNIVVEDDEVAAAAIEYL 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 387 KREKE-----LSLEKEQNKRLwdrdtgnsitidhlrRELDDRNMEVQRLEALLKAMKNECQGQMERQMAAIQGKNESLEK 461
Cdd:COG1196 567 KAAKAgratfLPLDKIRARAA---------------LAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 462 VSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAI-EATNAEITKLRSRVDLKLQELQHLKNEGD 540
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELeELAERLAEEELELEEALLAEEEEERELAE 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 541 HLRNVQTECEALRLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEIND--RKLE---------LQEFK 609
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERleREIEalgpvnllaIEEYE 791
|
570 580 590
....*....|....*....|....*....|
gi 1958677953 610 ILKDKKDakirELEARVSDLELEKVKLVNA 639
Cdd:COG1196 792 ELEERYD----FLSEQREDLEEARETLEEA 817
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
543-843 |
2.03e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 2.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 543 RNVQTECEALRLQMAEKDkvIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIREL 622
Cdd:COG1196 216 RELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 623 EARVSDLElekvklvnagSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLkrnfrnksEEMESTTNRLKMQLKS 702
Cdd:COG1196 294 LAELARLE----------QDIARLEERRRELEERLEELEEELAELEEELEELEEEL--------EELEEELEEAEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 703 AQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVAT 782
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958677953 783 EKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLD 843
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
340-602 |
5.51e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 5.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 340 EDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLekeqnkrlwdrdtgnsitidhLRRE 419
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA---------------------LEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 420 LDDRNMEVQRLEALLKAMKNEcqgqMERQMAAIQgKNESLEKVSSLTAQlESTKEMLRKVveeltakkmnlesseRTVSD 499
Cdd:COG4942 85 LAELEKEIAELRAELEAQKEE----LAELLRALY-RLGRQPPLALLLSP-EDFLDAVRRL---------------QYLKY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 500 LTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhlrnVQTECEALRLQMAEKDKVIEILRQQIENMTQLVGQ 579
Cdd:COG4942 144 LAPARREQAEELRADLAELAALRAELEAERAELEALLAE------LEEERAALEALKAERQKLLARLEKELAELAAELAE 217
|
250 260
....*....|....*....|...
gi 1958677953 580 HGRTAGAMQVEKAQLEKEINDRK 602
Cdd:COG4942 218 LQQEAEELEALIARLEAEAAAAA 240
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
356-818 |
5.91e-07 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 53.54 E-value: 5.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 356 ELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSIT---IDHLRRELDDRNMEVQRLEA 432
Cdd:pfam05622 1 DLSEAQEEKDELAQRCHELDQQVSLLQEEKNSLQQENKKLQERLDQLESGDDSGTPGgkkYLLLQKQLEQLQEENFRLET 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 433 LLKAMKNECQgQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLtASLQEKERAIE 512
Cdd:pfam05622 81 ARDDYRIKCE-ELEKEVLELQHRNEELTSLAEEAQALKDEMDILRESSDKVKKLEATVETYKKKLEDL-GDLRRQVKLLE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 513 ATNAEITK--------------LRSRVDL---KLQELQHlKNEGDHLRNVQTECEALRLQ------MAEKDKVIE---IL 566
Cdd:pfam05622 159 ERNAEYMQrtlqleeelkkanaLRGQLETykrQVQELHG-KLSEESKKADKLEFEYKKLEeklealQKEKERLIIerdTL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 567 RQQIENM--TQLVGQHGRTAGAMQVEKAQ---------LEKEINDRKLELQ-EFKILKDKKDAKIRELEARVSDLELEKV 634
Cdd:pfam05622 238 RETNEELrcAQLQQAELSQADALLSPSSDpgdnlaaeiMPAEIREKLIRLQhENKMLRLGQEGSYRERLTELQQLLEDAN 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 635 KLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKRNFrnkSEEMEsttnrlkmQLKSAQSELEQTRNTL 714
Cdd:pfam05622 318 RRKNELETQNRLANQRILELQQQVEELQKALQEQGSKAEDSSLLKQKL---EEHLE--------KLHEAQSELQKKKEQI 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 715 KTMEgsdghamkvamgmQKQITAKRGQIDALQSKVQFLEEAVtSANKEKHFLKEEKSKlsQELSTVATEKNKMAG-ELEV 793
Cdd:pfam05622 387 EELE-------------PKQDSNLAQKIDELQEALRKKDEDM-KAMEERYKKYVEKAK--SVIKTLDPKQNPASPpEIQA 450
|
490 500
....*....|....*....|....*
gi 1958677953 794 LRSQERRLKEKVANMEVALDKASLQ 818
Cdd:pfam05622 451 LKNQLLEKDKKIEHLERDFEKSKLQ 475
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
225-675 |
5.97e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 5.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 225 LRELDTEISFLKGRIfpveDQLETLKSESQNKIELLLQQHQ----DRIEQLisehEVEITGLTEKASSARSQANSVQSQL 300
Cdd:COG4913 297 LEELRAELARLEAEL----ERLEARLDALREELDELEAQIRgnggDRLEQL----EREIERLERELEERERRRARLEALL 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 301 EIIQEQARNQNSMYMRQLSDLESTVSQLRSELREtkrmYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQK 380
Cdd:COG4913 369 AALGLPLPASAEEFAALRAEAAALLEALEEELEA----LEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 381 LLADLhkrEKELSLEKEQ------------------------------------------NKRLWDRDTGNSITIDHLRR 418
Cdd:COG4913 445 LRDAL---AEALGLDEAElpfvgelievrpeeerwrgaiervlggfaltllvppehyaaaLRWVNRLHLRGRLVYERVRT 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 419 ELDDRNMEV---QRLEALLKAMKNECQGQMERQMaaiqGKNESLEKVSSlTAQLES-----TKEMLRKVVEELTAKKMNL 490
Cdd:COG4913 522 GLPDPERPRldpDSLAGKLDFKPHPFRAWLEAEL----GRRFDYVCVDS-PEELRRhpraiTRAGQVKGNGTRHEKDDRR 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 491 ESSERTV--SDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRN-------------VQTECEALRLQ 555
Cdd:COG4913 597 RIRSRYVlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaeyswdeidvasAEREIAELEAE 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 556 MAEKDK---VIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIR-----ELEARVS 627
Cdd:COG4913 677 LERLDAssdDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlelraLLEERFA 756
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1958677953 628 DLELEKVklvnagseRLRAVKDIRQERDQLLNEVKTSRTELNNLSEDY 675
Cdd:COG4913 757 AALGDAV--------ERELRENLEERIDALRARLNRAEEELERAMRAF 796
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
243-813 |
7.94e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 53.64 E-value: 7.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 243 EDQLETLKsESQNKIELLLQQHQDRIEQLISEHEV------EITGLTEKASSARSQANSVQSQLEII---------QEQA 307
Cdd:pfam01576 11 EEELQKVK-ERQQKAESELKELEKKHQQLCEEKNAlqeqlqAETELCAEAEEMRARLAARKQELEEIlhelesrleEEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 308 RNQNSMYMR-----QLSDLESTVSQ---LRSELRETKRMYEDKIEELEKQLVL---ANSELT-EARTERDQFSQESGNLD 375
Cdd:pfam01576 90 RSQQLQNEKkkmqqHIQDLEEQLDEeeaARQKLQLEKVTTEAKIKKLEEDILLledQNSKLSkERKLLEERISEFTSNLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 376 DQ------LQKL----------LADLHKREKELSLEKEQNKRLWDRDTGNsitidhLRRELDDRNMEVQRLEALLKAMKN 439
Cdd:pfam01576 170 EEeekaksLSKLknkheamisdLEERLKKEEKGRQELEKAKRKLEGESTD------LQEQIAELQAQIAELRAQLAKKEE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 440 ECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKemlrkvvEELTAKKMNLESSERTVSDLTASLQ----EKERAIEATN 515
Cdd:pfam01576 244 ELQAALARLEEETAQKNNALKKIRELEAQISELQ-------EDLESERAARNKAEKQRRDLGEELEalktELEDTLDTTA 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 516 AEiTKLRSRvdlKLQELQHLKNEGDHLRNVQtecEALRLQMAEKDKvieilrQQIENMTQLVGQHGRTAGAMQVEKAQLE 595
Cdd:pfam01576 317 AQ-QELRSK---REQEVTELKKALEEETRSH---EAQLQEMRQKHT------QALEELTEQLEQAKRNKANLEKAKQALE 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 596 KEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDY 675
Cdd:pfam01576 384 SENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDV 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 676 EVLKRNFRNKSEEMESTTnRLKMQLKSAQSELEQTRNTLKTMEGSDGHAMKvamGMQKQITAKRGQIDALQSKVQFLEEA 755
Cdd:pfam01576 464 SSLESQLQDTQELLQEET-RQKLNLSTRLRQLEDERNSLQEQLEEEEEAKR---NVERQLSTLQAQLSDMKKKLEEDAGT 539
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958677953 756 VTSANKEKHFLKEEKSKLSQELSTVATEKNKmagelevLRSQERRLKEKVANMEVALD 813
Cdd:pfam01576 540 LEALEEGKKRLQRELEALTQQLEEKAAAYDK-------LEKTKNRLQQELDDLLVDLD 590
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
318-831 |
9.00e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 53.37 E-value: 9.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 318 LSDLESTVSQLrSELRETKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGN-----------------LDDQLQK 380
Cdd:PRK01156 175 IDMLRAEISNI-DYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNamddynnlksalnelssLEDMKNR 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 381 LLADLHKREKELSLEKEQNKRLWD-RDTGNSITIDHL---RRELDDRNMEVQRLEALLKAMKNeCQGQMERQMAAIQgKN 456
Cdd:PRK01156 254 YESEIKTAESDLSMELEKNNYYKElEERHMKIINDPVyknRNYINDYFKYKNDIENKKQILSN-IDAEINKYHAIIK-KL 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 457 ESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLK 536
Cdd:PRK01156 332 SVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKEL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 537 NE--------GDHLRNVQTECEALRLQMAEKDKVIEILRQQ-----------IENMTQLVGQHGRTAGAMQVEKAQLEKE 597
Cdd:PRK01156 412 NEinvklqdiSSKVSSLNQRIRALRENLDELSRNMEMLNGQsvcpvcgttlgEEKSNHIINHYNEKKSRLEEKIREIEIE 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 598 INDRKLELQEFKILKD--------KKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELN 669
Cdd:PRK01156 492 VKDIDEKIVDLKKRKEyleseeinKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWL 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 670 NLSEDYEVLK-RNFRNKSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSK 748
Cdd:PRK01156 572 NALAVISLIDiETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGK 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 749 VQFLEEAVTsankEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQR 828
Cdd:PRK01156 652 IDNYKKQIA----EIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES 727
|
...
gi 1958677953 829 QEQ 831
Cdd:PRK01156 728 MKK 730
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
286-525 |
1.02e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 286 ASSARSQANSVQSQLEIIQEQARNQNsmymRQLSDLESTVSQLRSELRETKRMY---EDKIEELEKQLVLANSELTEART 362
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELE----KELAALKKEEKALLKQLAALERRIaalARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 363 ERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKNECQ 442
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 443 GQMERQMAAIQGKNESLekvssltAQLESTKEMLRKVVEELTAKKmnlESSERTVSDLTASLQEKERAIEATNAEITKLR 522
Cdd:COG4942 171 AERAELEALLAELEEER-------AALEALKAERQKLLARLEKEL---AELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
...
gi 1958677953 523 SRV 525
Cdd:COG4942 241 ERT 243
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
76-800 |
1.03e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 53.42 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 76 ERVLEEYSQQVKDLQRRLNESNELHEKQKFYlRQSVIDLQTKLQEMQM------ERDAMADIRRRESQ-SQEELRNQL-- 146
Cdd:PRK04863 323 ESDLEQDYQAASDHLNLVQTALRQQEKIERY-QADLEELEERLEEQNEvveeadEQQEENEARAEAAEeEVDELKSQLad 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 147 ---------------QNTVHELEAAKSL----------KEDMLKDSSTQIEQLRKLMLSHEGVLQDIRSVLVDFEEA--S 199
Cdd:PRK04863 402 yqqaldvqqtraiqyQQAVQALERAKQLcglpdltadnAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAyqL 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 200 GKKICEHDSMSTMH--FRSLgsaiskiLRELDTEiSFLKGRIFPVEDQLETLK--SESQNKIELLLQQHQDR-------- 267
Cdd:PRK04863 482 VRKIAGEVSRSEAWdvAREL-------LRRLREQ-RHLAEQLQQLRMRLSELEqrLRQQQRAERLLAEFCKRlgknldde 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 268 --IEQLISEHEVEITGLTEKASSARSQANSVQSQLEIIQEQaRNQNSMYMRQLSDLESTVSQLRS---ELRETKRMYEDK 342
Cdd:PRK04863 554 deLEQLQEELEARLESLSESVSEARERRMALRQQLEQLQAR-IQRLAARAPAWLAAQDALARLREqsgEEFEDSQDVTEY 632
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 343 IEEL---EKQLVLANSELTEART----ERDQFSQESGNLDDQLQKL--------LADLHK-----------------RE- 389
Cdd:PRK04863 633 MQQLlerERELTVERDELAARKQaldeEIERLSQPGGSEDPRLNALaerfggvlLSEIYDdvsledapyfsalygpaRHa 712
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 390 ---KELSLEKEQNKRLWDRdTGNSITIDHLRRELDDRNMEVQRLEallkamKNECQGQMERQMAAIQ-------GKNESL 459
Cdd:PRK04863 713 ivvPDLSDAAEQLAGLEDC-PEDLYLIEGDPDSFDDSVFSVEELE------KAVVVKIADRQWRYSRfpevplfGRAARE 785
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 460 EKVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVS----------------DLTASLQEKERAIEATNAEITKLRS 523
Cdd:PRK04863 786 KRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGshlavafeadpeaelrQLNRRRVELERALADHESQEQQQRS 865
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 524 RVD---LKLQELQHLKNEGDHLR--NVQTECEALRLQMAEKDKVIEILRQQIENMTQLVGQhgrtAGAMQVEKAQLEKEI 598
Cdd:PRK04863 866 QLEqakEGLSALNRLLPRLNLLAdeTLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPI----VSVLQSDPEQFEQLK 941
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 599 NDRKLELQEFKILKDKKDAkIRELEARVSDLELEK-VKLVNAGS---ERLRA-VKDIRQERDQLLNEVKTSRTELNNLSE 673
Cdd:PRK04863 942 QDYQQAQQTQRDAKQQAFA-LTEVVQRRAHFSYEDaAEMLAKNSdlnEKLRQrLEQAEQERTRAREQLRQAQAQLAQYNQ 1020
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 674 DYEVLKRNFRNKSEemesttnrlkmQLKSAQSELEQTrnTLKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKVQFLE 753
Cdd:PRK04863 1021 VLASLKSSYDAKRQ-----------MLQELKQELQDL--GVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCE 1087
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|...
gi 1958677953 754 EAVTSANKEkhfLKEEKSKLSQELSTVATEKN------KMAGELEVLRSQERR 800
Cdd:PRK04863 1088 AEMDNLTKK---LRKLERDYHEMREQVVNAKAgwcavlRLVKDNGVERRLHRR 1137
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
317-818 |
1.40e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 52.44 E-value: 1.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 317 QLSDLESTVSQLRSELRETKRMYEDKIEELEKqlvlanseltEARTERDQFSQESgnldDQLQKLLADLHKREKELSLEK 396
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQMELEHKRARIELEK----------KASALKRQLDRES----DRNQELQKRIRLLEKREAEAE 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 397 EQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKNEC---QGQMERQMAAIQGKNESLEkvssltaQLESTK 473
Cdd:pfam05557 69 EALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELselRRQIQRAELELQSTNSELE-------ELQERL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 474 EMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIE--ATNAEITKLR----SRVDLKLQELQHLKNEGDHLRNVQT 547
Cdd:pfam05557 142 DLLKAKASEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQsqEQDSEIVKNSkselARIPELEKELERLREHNKHLNENIE 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 548 ECEALRLQMAEkdkvieiLRQQIENMTQlvgqhgrtagaMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEA--- 624
Cdd:pfam05557 222 NKLLLKEEVED-------LKRKLEREEK-----------YREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDlsr 283
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 625 RVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSR---TELNNLSEDYEVLKRNFRNKSEEMESTTNRLKMQLK 701
Cdd:pfam05557 284 RIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQYLkkiEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILE 363
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 702 SAQSELEQTRNTLKTMEGSDGhAMKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSklSQELSTVA 781
Cdd:pfam05557 364 SYDKELTMSNYSPQLLERIEE-AEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQES--LADPSYSK 440
|
490 500 510
....*....|....*....|....*....|....*..
gi 1958677953 782 TEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQ 818
Cdd:pfam05557 441 EEVDSLRRKLETLELERQRLREQKNELEMELERRCLQ 477
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
132-575 |
1.46e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 132 RRRESQSQEELRNQLQNTVHELEAAKSLKEDMLKDSSTQIEQLRKLM--LSHEGVLQDIRSVLVDFEEAsgkkicehdsm 209
Cdd:COG4717 79 ELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLqlLPLYQELEALEAELAELPER----------- 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 210 stmhFRSLGSAISKIlRELDTEISFLKGRIFPVEDQLETLKSESQNKIELLLQQHQDRIEQL---ISEHEVEITGLTEKA 286
Cdd:COG4717 148 ----LEELEERLEEL-RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELqqrLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 287 SSARSQANSVQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELRETKRMYEDKIEELEKQLVLANSELTEARTERDQ 366
Cdd:COG4717 223 EELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 367 FSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRN--MEVQRLEALLKAMKNECQGQ 444
Cdd:COG4717 303 EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEeeLQLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 445 MERQMAAIQGKNESLEKvssLTAQLESTKEMLRKVVEELTAkkmnlESSERTVSDLTASLQEKERAIEATNAEITKLRSR 524
Cdd:COG4717 383 DEEELRAALEQAEEYQE---LKEELEELEEQLEELLGELEE-----LLEALDEEELEEELEELEEELEELEEELEELREE 454
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1958677953 525 VDLKLQELQHLKNEGDhLRNVQTECEALRLQM---AEKDKVIEILRQQIENMTQ 575
Cdd:COG4717 455 LAELEAELEQLEEDGE-LAELLQELEELKAELrelAEEWAALKLALELLEEARE 507
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
67-580 |
1.67e-06 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 52.45 E-value: 1.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 67 TSYPGKEHIERVLEEYSQ----QVKDL-QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEE 141
Cdd:pfam07111 122 AALAGAEMVRKNLEEGSQreleEIQRLhQEQLSSLTQAHEEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAEL 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 142 LRNQLQNTVHELEAAKSLKEDMLKDSSTQI---------EQLRKLMLSHEGVLQDIRS------------------VLVD 194
Cdd:pfam07111 202 LRKQLSKTQEELEAQVTLVESLRKYVGEQVppevhsqtwELERQELLDTMQHLQEDRAdlqatvellqvrvqslthMLAL 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 195 FEEASGKKICEHDSMSTMHFRSLGSAISKILRELDTEISFLKGRIFPVEDQLETLKSE---------SQNKIELLLQQH- 264
Cdd:pfam07111 282 QEEELTRKIQPSDSLEPEFPKKCRSLLNRWREKVFALMVQLKAQDLEHRDSVKQLRGQvaelqeqvtSQSQEQAILQRAl 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 265 QDRIEQLISEH------EVEITGLTEKASSARSQANSVQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSelRETKRM 338
Cdd:pfam07111 362 QDKAAEVEVERmsakglQMELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPS--LSNRLS 439
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 339 YEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRR 418
Cdd:pfam07111 440 YAVRKVHTIKGLMARKVALAQLRQESCPPPPPAPPVDADLSLELEQLREERNRLDAELQLSAHLIQQEVGRAREQGEAER 519
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 419 EldDRNMEVQRLEALLKAMKNECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKkmnLESSER-TV 497
Cdd:pfam07111 520 Q--QLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQEIYGQALQEKVAE---VETRLReQL 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 498 SDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALRLQMAEKDKVIEILRQQIENMTQLV 577
Cdd:pfam07111 595 SDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEARKEEGQRLARRVQELERDKNLMLATLQQEGLLSRY 674
|
...
gi 1958677953 578 GQH 580
Cdd:pfam07111 675 KQQ 677
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
115-809 |
3.29e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.59 E-value: 3.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 115 QTKLQEMQMERDAMADIRRRESQSQEELRNQLQNTVHELEAAKSLKEDMLKDSSTQIEQLRKLMLSHEGVLqdirsvlvd 194
Cdd:TIGR00606 425 QEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSL--------- 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 195 feeasgkkiCEHDSMSTMHFRSLGSAISKILRELDTEISfLKGRIFPVEDQLETLKSESQNKIElllqqhqdRIEQLISE 274
Cdd:TIGR00606 496 ---------TETLKKEVKSLQNEKADLDRKLRKLDQEME-QLNHHTTTRTQMEMLTKDKMDKDE--------QIRKIKSR 557
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 275 HEVEITG----------LTEKASSARSQANSVQSQLEIIQEQARNQNSM---YMRQLSDLESTVSQLRSELRE--TKRMY 339
Cdd:TIGR00606 558 HSDELTSllgyfpnkkqLEDWLHSKSKEINQTRDRLAKLNKELASLEQNknhINNELESKEEQLSSYEDKLFDvcGSQDE 637
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 340 EDKIEELEKQLVLANSE---LTEARTERDQFSQESGNLDDQLQKLLADLHKREKELsleKEQNKRLWDRDTGNSITIDHL 416
Cdd:TIGR00606 638 ESDLERLKEEIEKSSKQramLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAEL---QEFISDLQSKLRLAPDKLKST 714
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 417 RRELDDRNMEVQRLEALLKAMKNECQgQMERQMAAIQGKNESLEK-VSSLTAQLESTKEMLRKVVEELTAKKmNLESSER 495
Cdd:TIGR00606 715 ESELKKKEKRRDEMLGLAPGRQSIID-LKEKEIPELRNKLQKVNRdIQRLKNDIEEQETLLGTIMPEEESAK-VCLTDVT 792
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 496 TVSDLTASLQEKERAIEATNAEITKlrSRVDLKLQELQHLKNEGDH-LRNVQTECEALRLQMAEKDKVIeilrQQIENMT 574
Cdd:TIGR00606 793 IMERFQMELKDVERKIAQQAAKLQG--SDLDRTVQQVNQEKQEKQHeLDTVVSKIELNRKLIQDQQEQI----QHLKSKT 866
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 575 QLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLR----AVKDI 650
Cdd:TIGR00606 867 NELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKkaqdKVNDI 946
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 651 RQERDQLLNEVKTSRTELNNLSEDYEVLKrnfrnkseemESTTNRLKMQLKSAQSELEQTRNTLKTMEGSDGHAMKVAMG 730
Cdd:TIGR00606 947 KEKVKNIHGYMKDIENKIQDGKDDYLKQK----------ETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERW 1016
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 731 MQKQITAKRgqidaLQSKVQFLEEAVTSANKEKH-----FLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKV 805
Cdd:TIGR00606 1017 LQDNLTLRK-----RENELKEVEEELKQHLKEMGqmqvlQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091
|
....
gi 1958677953 806 ANME 809
Cdd:TIGR00606 1092 REPQ 1095
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
548-836 |
3.32e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 3.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 548 ECEALRLQMAEKDKVIEILRQQIENMtqlvgqhgrtagamQVEKAQLEK--EINDRKLELQEFKILKDKK--DAKIRELE 623
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLERL--------------RREREKAERyqALLKEKREYEGYELLKEKEalERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 624 ARVSDLELEKVKLVNAGSERLRAVKDIRQERDQLlnevktsRTELNNLSEDYEvlkRNFRNKSEEMESTTNRLKMQLKSA 703
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEEL-------NKKIKDLGEEEQ---LRVKEKIGELEAEIASLERSIAEK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 704 QSELEQtrntlktmegsdghamkvamgMQKQITAKRGQIDALQSKVQFLEEAVTSANKEKhflkeekSKLSQELSTVATE 783
Cdd:TIGR02169 314 ERELED---------------------AEERLAKLEAEIDKLLAEIEELEREIEEERKRR-------DKLTEEYAELKEE 365
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1958677953 784 KNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRL 836
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRL 418
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
555-819 |
3.42e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 3.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 555 QMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKV 634
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 635 KLVNAGSERLRAV-KDIRQERDQLLnevkTSRTELNNLSEDYEVLKRNFRNKSEEMEsttnrlkmQLKSAQSELEQTRNT 713
Cdd:COG4942 101 AQKEELAELLRALyRLGRQPPLALL----LSPEDFLDAVRRLQYLKYLAPARREQAE--------ELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 714 LktmegsdghamkvamgmQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEV 793
Cdd:COG4942 169 L-----------------EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
250 260
....*....|....*....|....*.
gi 1958677953 794 LRSQERRLKEKVANMEVALDKASLQF 819
Cdd:COG4942 232 LEAEAAAAAERTPAAGFAALKGKLPW 257
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
72-520 |
3.52e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 3.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 72 KEHIERVLEEYSQQVKDLQRRLNESnelhEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEELRNQLQNTVH 151
Cdd:TIGR04523 199 LELLLSNLKKKIQKNKSLESQISEL----KKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQK 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 152 ELEAAKSL---KEDMLKDSSTQIEQLRKLMLshegvlQDIRSVLVDFEEASGKKICEHD---SMSTMHFRSLGSAISKIL 225
Cdd:TIGR04523 275 ELEQNNKKikeLEKQLNQLKSEISDLNNQKE------QDWNKELKSELKNQEKKLEEIQnqiSQNNKIISQLNEQISQLK 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 226 RE---LDTEISFLKGRIFPVEDQLETLKSESQNKIELL--LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSVQSQL 300
Cdd:TIGR04523 349 KEltnSESENSEKQRELEEKQNEIEKLKKENQSYKQEIknLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEI 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 301 EIIQEQARNQNSmymrQLSDLESTVSQLRSELRETKRM----------YEDKIEELEKQLVLANSELTEARTERDQFSQE 370
Cdd:TIGR04523 429 ERLKETIIKNNS----EIKDLTNQDSVKELIIKNLDNTresletqlkvLSRSINKIKQNLEQKQKELKSKEKELKKLNEE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 371 SGNLDDQLQKL---LADLHKREKELSLEKEQ--------NKRLWDRDTGNsiTIDHLRRELDDRNMEVQRLE---ALLKA 436
Cdd:TIGR04523 505 KKELEEKVKDLtkkISSLKEKIEKLESEKKEkeskisdlEDELNKDDFEL--KKENLEKEIDEKNKEIEELKqtqKSLKK 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 437 MKNECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNA 516
Cdd:TIGR04523 583 KQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWP 662
|
....
gi 1958677953 517 EITK 520
Cdd:TIGR04523 663 EIIK 666
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
453-680 |
3.99e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 51.08 E-value: 3.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 453 QGKNESLEKVSSLTAQLESTKEMLRKVVEEL-----TAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRvdl 527
Cdd:PRK05771 39 ELSNERLRKLRSLLTKLSEALDKLRSYLPKLnplreEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENE--- 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 528 kLQELQHLKNEGDHLRNVQTECEALR--------LQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEIN 599
Cdd:PRK05771 116 -IKELEQEIERLEPWGNFDLDLSLLLgfkyvsvfVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVE 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 600 D--RKLELQEFKILKDKK-DAKIRELEARVSDLElekvklvnagSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYE 676
Cdd:PRK05771 195 EelKKLGFERLELEEEGTpSELIREIKEELEEIE----------KERESLLEELKELAKKYLEELLALYEYLEIELERAE 264
|
....
gi 1958677953 677 VLKR 680
Cdd:PRK05771 265 ALSK 268
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
119-792 |
4.34e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.99 E-value: 4.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 119 QEMQMERDAMADIRRRESQSQEELRNQLQNTVHELEAAKSLKEDMLKDSSTQIEQLRKLMLSHEGVLQDIRSVLVDFEEA 198
Cdd:pfam12128 290 QLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGK 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 199 SGKKICEHDSMstmhfrslgsaISKILRELDTEISFLKGRIFPVEDQLETLKSESQNKIELLLQQHQDRIEQLISEHEVE 278
Cdd:pfam12128 370 HQDVTAKYNRR-----------RSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 279 ITGLTEKASSARSQANSVQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELRETKrmYEDKIEELEKQLVLANSELT 358
Cdd:pfam12128 439 EYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQ--ARKRRDQASEALRQASRRLE 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 359 EARTERDQFSQEsgnLDDQLQKLLADLHKR------------EKELSLEKEQNKRLWDRDTGNSITIDHLRrelddrnME 426
Cdd:pfam12128 517 ERQSALDELELQ---LFPQAGTLLHFLRKEapdweqsigkviSPELLHRTDLDPEVWDGSVGGELNLYGVK-------LD 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 427 VQRLEALLKAMKNEcqgQMERQMAAIQgknESLEKVSSLTAQLESTKEMLRKVVEELTAK----KMNLESSERTVSDLTA 502
Cdd:pfam12128 587 LKRIDVPEWAASEE---ELRERLDKAE---EALQSAREKQAAAEEQLVQANGELEKASREetfaRTALKNARLDLRRLFD 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 503 SLQ-EKERAIEATNAEITKL-RSRVDLKLQELQHLKNEGDHLRNVQTECEALRLQMAEKDKVIEilrqqienmtqlvgqh 580
Cdd:pfam12128 661 EKQsEKDKKNKALAERKDSAnERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVE---------------- 724
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 581 GRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVnagserlRAVKDIRQERdqllNE 660
Cdd:pfam12128 725 GALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLE-------RKIERIAVRR----QE 793
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 661 VKTSRTELNnlsEDYEVLKRNFRNKSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEGSDGHAmkvamgmQKQITAKRG 740
Cdd:pfam12128 794 VLRYFDWYQ---ETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQ-------QVRLSENLR 863
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 1958677953 741 QIDALQSKVQFLEEAVTSANKEkHFLKEEKSKLSQELSTVATEKNKMAGELE 792
Cdd:pfam12128 864 GLRCEMSKLATLKEDANSEQAQ-GSIGERLAQLEDLKLKRDYLSESVKKYVE 914
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
619-839 |
5.66e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 5.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 619 IRELEARVSDLELEKVKLvnagsERLRAVKDIRQERDQLLnevktSRTELNNLSEDYEVLkrnfRNKSEEMESTTNRLKM 698
Cdd:COG1196 195 LGELERQLEPLERQAEKA-----ERYRELKEELKELEAEL-----LLLKLRELEAELEEL----EAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 699 QLKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELS 778
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958677953 779 TVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQ 839
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
282-711 |
6.03e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 6.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 282 LTEKASSARSQANSVQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELRETKRMYEDKIEELEKQLVLANSELTEAR 361
Cdd:PTZ00121 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 362 TERDQFSQESGNLDDQLQKllADLHKREKELSLEKEQNKrlwdrdtgnsitIDHLRRELDDRNMEVQRLEALLKAMKNEC 441
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKK--ADELKKAEELKKAEEKKK------------AEEAKKAEEDKNMALRKAEEAKKAEEARI 1594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 442 QGQMERQMAAIQGKNESLEKVSSLTAQLESTK--EMLRKVVEELTA------------KKMNLESSERTVSDLTASLQEK 507
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKkaEEEKKKVEQLKKkeaeekkkaeelKKAEEENKIKAAEEAKKAEEDK 1674
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 508 ERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALRLQMAE---KDKVIEILRQQIEN---MTQLVGQHG 581
Cdd:PTZ00121 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEeenKIKAEEAKKEAEEDkkkAEEAKKDEE 1754
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 582 RTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIR-ELEARVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNE 660
Cdd:PTZ00121 1755 EKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRmEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKE 1834
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1958677953 661 VKTSRTELNNLSEDYEVLKRNFRNKSEE---MESTTNRLKMQLKSAQSELEQTR 711
Cdd:PTZ00121 1835 VADSKNMQLEEADAFEKHKFNKNNENGEdgnKEADFNKEKDLKEDDEEEIEEAD 1888
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
297-785 |
7.25e-06 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 50.21 E-value: 7.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 297 QSQLEIIQEQARNQNSMYMRQLSDLeSTVSQLRSELRETKRMYEDKIEELE-------KQLVLANSELTEARTERDQFSQ 369
Cdd:pfam10174 73 QLTIQALQDELRAQRDLNQLLQQDF-TTSPVDGEDKFSTPELTEENFRRLQseherqaKELFLLRKTLEEMELRIETQKQ 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 370 ESGNLDDQLQKLLADLHKRekelSLEKEQNKRLWDRdtgnsitidhlRRELDDRNMEVQRLEALLKAMKNECQGQMERQM 449
Cdd:pfam10174 152 TLGARDESIKKLLEMLQSK----GLPKKSGEEDWER-----------TRRIAEAEMQLGHLEVLLDQKEKENIHLREELH 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 450 AAIQGKNESlekvssltaqleSTKEMLRKVVEELTAKKMNLESSERTVSDLTASL-----------QEKERAIEATNA-- 516
Cdd:pfam10174 217 RRNQLQPDP------------AKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLktngllhtedrEEEIKQMEVYKShs 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 517 -----EITKLRSRVDLKLQELQHLKNEGDHLRN-------------------------VQTECEALRLQMAEKDKVIEIL 566
Cdd:pfam10174 285 kfmknKIDQLKQELSKKESELLALQTKLETLTNqnsdckqhievlkesltakeqraaiLQTEVDALRLRLEEKESFLNKK 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 567 RQQIENMTQlvgQHGRTAGAMQVEKAQLekEINDRKLELQEFKI------LKDkKDAKIRELEARVSDLELEK------- 633
Cdd:pfam10174 365 TKQLQDLTE---EKSTLAGEIRDLKDML--DVKERKINVLQKKIenlqeqLRD-KDKQLAGLKERVKSLQTDSsntdtal 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 634 VKLVNAGSERLRAVKDIRQERD----QLLNEVKTSRTELNNLSEDYEVLKRNFRNKseemESTTNRLKMQLKSAQSELEQ 709
Cdd:pfam10174 439 TTLEEALSEKERIIERLKEQREredrERLEELESLKKENKDLKEKVSALQPELTEK----ESSLIDLKEHASSLASSGLK 514
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 710 TRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQ------SKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATE 783
Cdd:pfam10174 515 KDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRtnpeinDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENE 594
|
..
gi 1958677953 784 KN 785
Cdd:pfam10174 595 KN 596
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
71-517 |
7.37e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 7.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 71 GKEHIERVLEEYSQQVKDLQRRLNESNELHE------KQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEELRN 144
Cdd:PRK03918 308 ELREIEKRLSRLEEEINGIEERIKELEEKEErleelkKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 145 QLQNTVHELEAAKSLKEDMLKDSSTQIEQLRKlmlshegVLQDIRSVLVDFEEASGK------KICEHDSmstmhfrslg 218
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKK-------EIKELKKAIEELKKAKGKcpvcgrELTEEHR---------- 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 219 saiSKILRELDTEISFLKGRIFPVEDQLETLKSESQnKIELLLQqhqdRIEQLISEHEV--EITGLTEKASSARSQansv 296
Cdd:PRK03918 451 ---KELLEEYTAELKRIEKELKEIEEKERKLRKELR-ELEKVLK----KESELIKLKELaeQLKELEEKLKKYNLE---- 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 297 qsQLEIIQEQARNQNsmymRQLSDLESTVSQLRSELRETKRmYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDD 376
Cdd:PRK03918 519 --ELEKKAEEYEKLK----EKLIKLKGEIKSLKKELEKLEE-LKKKLAELEKKLDELEEELAELLKELEELGFESVEELE 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 377 QLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKN--------ECQGQMERQ 448
Cdd:PRK03918 592 ERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKkyseeeyeELREEYLEL 671
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958677953 449 MAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTAsLQEKERAIEATNAE 517
Cdd:PRK03918 672 SRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE-LREKVKKYKALLKE 739
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
492-716 |
7.38e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 7.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 492 SSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE----GDHLRNVQTECEALRLQMAEKDKVIEILR 567
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRiaalARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 568 QQIENMTQLVGQHGRTAGAM-QVEKAQL---EKEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSER 643
Cdd:COG4942 97 AELEAQKEELAELLRALYRLgRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958677953 644 LRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLkrnfRNKSEEMESTTNRLKMQLKSAQSELEQTRNTLKT 716
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAEL----AAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
442-807 |
2.09e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 442 QGQMErqmaAIQGKNESLEKVSSLTAQL---ESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEI 518
Cdd:PRK03918 134 QGEID----AILESDESREKVVRQILGLddyENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREI 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 519 TKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALRLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQvEKAQLEKEI 598
Cdd:PRK03918 210 NEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE-EKVKELKEL 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 599 NDRKLELQEFKILKDKKDAKIRELEARVSDLElekvklvnagsERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVL 678
Cdd:PRK03918 289 KEKAEEYIKLSEFYEEYLDELREIEKRLSRLE-----------EEINGIEERIKELEEKEERLEELKKKLKELEKRLEEL 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 679 KRNFRNKSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEgsdghamKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTS 758
Cdd:PRK03918 358 EERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELE-------KAKEEIEEEISKITARIGELKKEIKELKKAIEE 430
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958677953 759 ANKEK------------HFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVAN 807
Cdd:PRK03918 431 LKKAKgkcpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK 491
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
309-802 |
2.32e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.56 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 309 NQNSMYMRQLSDLESTVSQLRSELRETKrmyeDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKR 388
Cdd:pfam05483 240 KQVSLLLIQITEKENKMKDLTFLLEESR----DKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKAL 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 389 EKELSLEKEQNKRLWDRDTGNSITIDHLRRE----LDDRNMEVQRLEALLKAMKNECQG---QMERQMAAIQGKNESLEK 461
Cdd:pfam05483 316 EEDLQIATKTICQLTEEKEAQMEELNKAKAAhsfvVTEFEATTCSLEELLRTEQQRLEKnedQLKIITMELQKKSSELEE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 462 VSSLTAQLESTKEMLRKVVEE----LTAKKMNLESSER---TVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQH 534
Cdd:pfam05483 396 MTKFKNNKEVELEELKKILAEdeklLDEKKQFEKIAEElkgKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVED 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 535 LKNE--GDHLRNVQ--TECEALRLQMAE-----KDKVIEILRQQ--IENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKL 603
Cdd:pfam05483 476 LKTEleKEKLKNIEltAHCDKLLLENKEltqeaSDMTLELKKHQedIINCKKQEERMLKQIENLEEKEMNLRDELESVRE 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 604 ELQ----EFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLK 679
Cdd:pfam05483 556 EFIqkgdEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYE 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 680 RNFRNKSEEMESTTNRLKMQLKSAQSELEQTR----NTLKTMEGSDG---HAMKVAMGMQKQITAKRGQIDALQSKVQ-- 750
Cdd:pfam05483 636 IKVNKLELELASAKQKFEEIIDNYQKEIEDKKiseeKLLEEVEKAKAiadEAVKLQKEIDKRCQHKIAEMVALMEKHKhq 715
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958677953 751 ---FLEEAVTSANKEKHFLKEEKS---KLSQELSTVATEKNKMAGELEVLRSQERRLK 802
Cdd:pfam05483 716 ydkIIEERDSELGLYKNKEQEQSSakaALEIELSNIKAELLSLKKQLEIEKEEKEKLK 773
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
487-705 |
3.32e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 3.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 487 KMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSR---VDLKLQELQHLKNegdhLRNVQTECEALRLQMAEKDKVI 563
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglVDLSEEAKLLLQQ----LSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 564 EILRQQIENMTQLVGQHGRTAGAmqvekAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSER 643
Cdd:COG3206 243 AALRAQLGSGPDALPELLQSPVI-----QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILAS 317
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958677953 644 LRA-VKDIRQERDQLLNEVKTSRTELNNLSE---DYEVLKRNFRNKSEEMESTTNRLKmQLKSAQS 705
Cdd:COG3206 318 LEAeLEALQAREASLQAQLAQLEARLAELPEleaELRRLEREVEVARELYESLLQRLE-EARLAEA 382
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
120-539 |
3.52e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.18 E-value: 3.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 120 EMQMERDAMADIRRRESQSQEELRNQLQNTVHELEAAKSLKEDMLK---DSSTQIEQLRKLMLSHEGVLQDIRSVLVDFE 196
Cdd:pfam05483 353 EFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKfknNKEVELEELKKILAEDEKLLDEKKQFEKIAE 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 197 EASGKKicehdsmstMHFRSLGSAISKILRELDTEISFLKGRIFPVEDQLETLKSESQNK--IELLLQQHQDRIeqlise 274
Cdd:pfam05483 433 ELKGKE---------QELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEklKNIELTAHCDKL------ 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 275 hEVEITGLTEKASSARSQANSVQSQLeiiqEQARNQNSMYMRQLSDLESTVSQLRSELRETKRMYEDKIEELEKQLVLAN 354
Cdd:pfam05483 498 -LLENKELTQEASDMTLELKKHQEDI----INCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSE 572
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 355 SELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALL 434
Cdd:pfam05483 573 ENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKF 652
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 435 KAMKNECQGQMERQMAAIQGKNESLE----------------------KVSSLTAQLESTKEMLRKVVEELTAKKMNLES 492
Cdd:pfam05483 653 EEIIDNYQKEIEDKKISEEKLLEEVEkakaiadeavklqkeidkrcqhKIAEMVALMEKHKHQYDKIIEERDSELGLYKN 732
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1958677953 493 SERTVSDLTASLqekERAIEATNAEITKLRSRVDLKLQELQHLKNEG 539
Cdd:pfam05483 733 KEQEQSSAKAAL---EIELSNIKAELLSLKKQLEIEKEEKEKLKMEA 776
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
552-812 |
3.80e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 552 LRLQMAEKDKVIEILRQQIENMTQLVGQHGrtagAMQVEKAQLE--KEINDRKLELQEFKILKDKKDAKIRELEARVSDL 629
Cdd:COG4913 213 VREYMLEEPDTFEAADALVEHFDDLERAHE----ALEDAREQIEllEPIRELAERYAAARERLAELEYLRAALRLWFAQR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 630 ELEKVKlvnagserlRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKRNFR-NKSEEMEsttnRLKMQLKSAQSELE 708
Cdd:COG4913 289 RLELLE---------AELEELRAELARLEAELERLEARLDALREELDELEAQIRgNGGDRLE----QLEREIERLERELE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 709 QTRN-------TLKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKvqfLEEAVTSANKEKHFLKEEKSKLSQELSTVA 781
Cdd:COG4913 356 ERERrrarleaLLAALGLPLPASAEEFAALRAEAAALLEALEEELEA---LEEALAEAEAALRDLRRELRELEAEIASLE 432
|
250 260 270
....*....|....*....|....*....|.
gi 1958677953 782 TEKNKMAGELEVLRsqeRRLKEKVANMEVAL 812
Cdd:COG4913 433 RRKSNIPARLLALR---DALAEALGLDEAEL 460
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
223-396 |
4.00e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 48.13 E-value: 4.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 223 KILRELDTEISFLKGRIFPVEDQL-------ETLKSESQnKIEL--LLQQHQDRIEQlISEhevEITGLTEKASSARSQA 293
Cdd:PRK10929 79 KLSAELRQQLNNERDEPRSVPPNMstdaleqEILQVSSQ-LLEKsrQAQQEQDRARE-ISD---SLSQLPQQQTEARRQL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 294 NSVQSQLeiiQEQARNQNSMYMRQLSDLESTVSQLRSelretkrmyedKIEELEKQLVLANSELTEARTERDQFSQESGN 373
Cdd:PRK10929 154 NEIERRL---QTLGTPNTPLAQAQLTALQAESAALKA-----------LVDELELAQLSANNRQELARLRSELAKKRSQQ 219
|
170 180
....*....|....*....|....*.
gi 1958677953 374 LDDQLQKL---LADLHKREKELSLEK 396
Cdd:PRK10929 220 LDAYLQALrnqLNSQRQREAERALES 245
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
276-518 |
4.02e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 4.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 276 EVEITGLTEKASSARSQANSVQSQLEIIQEqarnqnsmymrQLSDLESTVSQLRSELRETkrmyEDKIEELEKQLVLANS 355
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQA-----------ELEELNEEYNELQAELEAL----QAEIDKLQAEIAEAEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 356 ELTEARTERDQF---SQESGNLDDQLQKLL-----ADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEV 427
Cdd:COG3883 80 EIEERREELGERaraLYRSGGSVSYLDVLLgsesfSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAEL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 428 QRLEALLKAMKNEcqgqMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQE 506
Cdd:COG3883 160 EALKAELEAAKAE----LEAQQAEQEALLAQLSaEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
250
....*....|..
gi 1958677953 507 KERAIEATNAEI 518
Cdd:COG3883 236 AAAAAAAAASAA 247
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
292-849 |
4.99e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 4.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 292 QANSVQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELRETKrmyEDKIEELEKQLVLANSELTEARTERDQFSQES 371
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEE---EKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 372 GNLDDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgnsitidhlrrelddrnMEVQRLEALLKAMKNECQGQMERQMAA 451
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKKEKEE--------------------------IEELEKELKELEIKREAEEEEEEELEK 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 452 IQGKNESLEKVSSLTAQLEStkEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQE 531
Cdd:pfam02463 364 LQEKLEQLEEELLAKKKLES--ERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIEL 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 532 LQHLKNEGDHLRNVQTECEALRLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKIL 611
Cdd:pfam02463 442 KQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 612 KDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKRNFRNKSEEMES 691
Cdd:pfam02463 522 GRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDP 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 692 TTNRLKMQLKSAQSELEQTRNT-----LKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFL 766
Cdd:pfam02463 602 ILNLAQLDKATLEADEDDKRAKvvegiLKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 767 KEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKV----ANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTL 842
Cdd:pfam02463 682 QEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEellaDRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEE 761
|
....*..
gi 1958677953 843 DVKELQG 849
Cdd:pfam02463 762 KEEEKSE 768
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
75-573 |
5.80e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 5.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 75 IERVLEEYSQQVKDLQRRLNESNELhEKQKFYLRQSVIDLQTKLQEmqmerdamadIRRRESQSQEELRnQLQNTVHELE 154
Cdd:PRK03918 219 LREELEKLEKEVKELEELKEEIEEL-EKELESLEGSKRKLEEKIRE----------LEERIEELKKEIE-ELEEKVKELK 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 155 AAKSLKEDMLKdsstqieqLRKLMLSHEGVLQDIRSVLVDFEE---ASGKKICEHDSMStmhfrSLGSAISKILRELDTE 231
Cdd:PRK03918 287 ELKEKAEEYIK--------LSEFYEEYLDELREIEKRLSRLEEeinGIEERIKELEEKE-----ERLEELKKKLKELEKR 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 232 ISFLKGR------IFPVEDQLETLKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSVQSQLEIIqE 305
Cdd:PRK03918 354 LEELEERhelyeeAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL-K 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 306 QARNQNSMYMRQLSDlESTVSQLRSELRETKRMyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLddQLQKLLADL 385
Cdd:PRK03918 433 KAKGKCPVCGRELTE-EHRKELLEEYTAELKRI-EKELKEIEEKERKLRKELRELEKVLKKESELIKLK--ELAEQLKEL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 386 HKREKELSLEK-EQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKNECQgQMERQMAAIQGK-----NESL 459
Cdd:PRK03918 509 EEKLKKYNLEElEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLD-ELEEELAELLKEleelgFESV 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 460 EKVSSLTAQLESTKE---MLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKlqELQHLK 536
Cdd:PRK03918 588 EELEERLKELEPFYNeylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE--EYEELR 665
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1958677953 537 NEGDHLRN----VQTECEALRLQMAEKDKVIEILRQQIENM 573
Cdd:PRK03918 666 EEYLELSRelagLRAELEELEKRREEIKKTLEKLKEELEER 706
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
48-727 |
5.95e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.27 E-value: 5.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 48 TQIPFFPKYEVELDSPRKSTSY-PGKEHIERVLEEYSQQVKDLQRRLNESNELHEKQKFYLRQ--SVIDLQTKLQEMQME 124
Cdd:TIGR00618 274 AQEAVLEETQERINRARKAAPLaAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQqsSIEEQRRLLQTLHSQ 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 125 RDAMADIRRRESQSQEELRNQLQNT--VHELEAAKSLKEDMLKDSSTQIEQLRKLMLSHEGVLQDIRSVLVDFEEASGKK 202
Cdd:TIGR00618 354 EIHIRDAHEVATSIREISCQQHTLTqhIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQ 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 203 ICEHDSMSTMHFRSLGSAISKILRELDTEISF--LKGRIFPVEDQLETLKSESQNKIE-----LLLQQHQDRIEQLISEH 275
Cdd:TIGR00618 434 ELQQRYAELCAAAITCTAQCEKLEKIHLQESAqsLKEREQQLQTKEQIHLQETRKKAVvlarlLELQEEPCPLCGSCIHP 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 276 EVEITGLTEKASSARSQansvqsqLEIIQEQARNQNSmymrqlsdLESTVSQLRSELRETKRmYEDKIEELEKQLvlanS 355
Cdd:TIGR00618 514 NPARQDIDNPGPLTRRM-------QRGEQTYAQLETS--------EEDVYHQLTSERKQRAS-LKEQMQEIQQSF----S 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 356 ELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwdrdtGNSITIDHLRRELDDRNM--EVQRLEAL 433
Cdd:TIGR00618 574 ILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLR------KLQPEQDLQDVRLHLQQCsqELALKLTA 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 434 LKAMKNECQGQMERQMAAI--QGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAI 511
Cdd:TIGR00618 648 LHALQLTLTQERVREHALSirVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENAS 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 512 EATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALRLQMAEKdkvieiLRQQIENMTQLVGQHGRTAGAMQVEK 591
Cdd:TIGR00618 728 SSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQ------TGAELSHLAAEIQFFNRLREEDTHLL 801
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 592 AQLEKEINDRKLELQEFKILKDKKDAKirELEARVSDLElEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNNL 671
Cdd:TIGR00618 802 KTLEAEIGQEIPSDEDILNLQCETLVQ--EEEQFLSRLE-EKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958677953 672 sEDYEVLKRNFR-NKSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEGSDGHAMKV 727
Cdd:TIGR00618 879 -NGINQIKIQFDgDALIKFLHEITLYANVRLANQSEGRFHGRYADSHVNARKYQGLA 934
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
412-660 |
6.80e-05 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 46.07 E-value: 6.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 412 TIDHLRRELDDRNMEVQRLEALLKAMKnecqgqmerqmAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLE 491
Cdd:pfam00038 55 EIEDLRRQLDTLTVERARLQLELDNLR-----------LAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 492 SS---------------ERTVSDLTASLQEKERAIEATNAeitklrSRVDLklqelqhlkneGDHLRNVQTECEalrlQM 556
Cdd:pfam00038 124 AKieslkeelaflkknhEEEVRELQAQVSDTQVNVEMDAA------RKLDL-----------TSALAEIRAQYE----EI 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 557 AEKDK--VIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARvsdLELEKV 634
Cdd:pfam00038 183 AAKNReeAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQKASLERQLAETEER---YELQLA 259
|
250 260
....*....|....*....|....*.
gi 1958677953 635 KLVNAGSERLRAVKDIRQERDQLLNE 660
Cdd:pfam00038 260 DYQELISELEAELQETRQEMARQLRE 285
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
472-842 |
1.06e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 472 TKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLK----------------LQELQHL 535
Cdd:COG4717 65 KPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLekllqllplyqelealEAELAEL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 536 KNEGDHLRNVQTECEALRLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ-LEKEINDRKLELQEFKILKDK 614
Cdd:COG4717 145 PERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEeLQQRLAELEEELEEAQEELEE 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 615 KDAKIRELEARVSDLELEKVK----------------------------------------LVNAGSERLRAVKDIRQER 654
Cdd:COG4717 225 LEEELEQLENELEAAALEERLkearlllliaaallallglggsllsliltiagvlflvlglLALLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 655 DQLLNEVKTSRTELNNLSEDYEVLKRNFRNKSEEMESTTNRL-----------KMQLKSAQSELEQTRNTLKTMEGSDGH 723
Cdd:COG4717 305 EELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIeelqellreaeELEEELQLEELEQEIAALLAEAGVEDE 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 724 AMKVAMGMQKQitakrgQIDALQSKVQFLEEAVTSANKEKHFL--KEEKSKLSQELSTVATEKNKMAGELEVLRSQERRL 801
Cdd:COG4717 385 EELRAALEQAE------EYQELKEELEELEEQLEELLGELEELleALDEEELEEELEELEEELEELEEELEELREELAEL 458
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1958677953 802 KEKVANME--VALDKASLQFAECQDIIQRQEQESVRLKLQHTL 842
Cdd:COG4717 459 EAELEQLEedGELAELLQELEELKAELRELAEEWAALKLALEL 501
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
219-462 |
1.52e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 219 SAISKI------LRELDTEISFLKGRIFPVEDQLETLkSESQNKIELLLQQHQDRI-----EQLISEHEVEITGLtEKAS 287
Cdd:COG4913 607 DNRAKLaaleaeLAELEEELAEAEERLEALEAELDAL-QERREALQRLAEYSWDEIdvasaEREIAELEAELERL-DASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 288 SARSQANSVQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELRETKRMYEDKIEELEKQLVLANSELTEARTERDQF 367
Cdd:COG4913 685 DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVE 764
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 368 SQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSIT----IDHLRRELDD-RNMEVQRLEALLKAMKNEC- 441
Cdd:COG4913 765 RELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDAdlesLPEYLALLDRlEEDGLPEYEERFKELLNENs 844
|
250 260 270
....*....|....*....|....*....|..
gi 1958677953 442 -------QGQMERQMAAIQGK----NESLEKV 462
Cdd:COG4913 845 iefvadlLSKLRRAIREIKERidplNDSLKRI 876
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
476-848 |
2.30e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 2.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 476 LRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEAlrlQ 555
Cdd:TIGR04523 105 LSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEK---E 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 556 MAEKDKVIEILRQQIenmtqlvgqhgrtagamqvekaqlekeindRKLELQEFKIlkDKKDAKIRELEARVSDLELEKVK 635
Cdd:TIGR04523 182 KLNIQKNIDKIKNKL------------------------------LKLELLLSNL--KKKIQKNKSLESQISELKKQNNQ 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 636 LVNAgserlraVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKRNFRNKSEEMEsTTNRLKMQLKSAQSELEQTRNTLK 715
Cdd:TIGR04523 230 LKDN-------IEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELE-QNNKKIKELEKQLNQLKSEISDLN 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 716 TMEGSDGHAmkvamGMQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLR 795
Cdd:TIGR04523 302 NQKEQDWNK-----ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLK 376
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1958677953 796 SQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQ 848
Cdd:TIGR04523 377 KENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIE 429
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
461-656 |
2.47e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 461 KVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELqhlkneGD 540
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL------GE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 541 HLRNVQTECEALRL-----------QMAEKdkvIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFK 609
Cdd:COG3883 91 RARALYRSGGSVSYldvllgsesfsDFLDR---LSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELE 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1958677953 610 ILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQERDQ 656
Cdd:COG3883 168 AAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
73-469 |
2.51e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 73 EHIERVLEEYSQQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDamaDIRRRESQSQEELRnQLQNTVHE 152
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE---ELQQRLAELEEELE-EAQEELEE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 153 LEAakslKEDMLKDSSTQIEQLRKlmLSHEGVLQDIRSVLVDFEEASGKKICEHDSMSTMHFRSLGSAIskILRELDTEI 232
Cdd:COG4717 225 LEE----ELEQLENELEAAALEER--LKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLA--LLFLLLARE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 233 SFLKGRIFPVEDQLETLKSESQNKIELLLQQHQDRIEQLISEHEVEITGLtEKASSARSQANSVQSQLEIIQEQARNQNS 312
Cdd:COG4717 297 KASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRI-EELQELLREAEELEEELQLEELEQEIAAL 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 313 MYMRQLSDLESTVSQLrsELRETKRMYEDKIEELEKQLVLANSELTE--ARTERDQFSQESGNLDDQLQKL---LADLHK 387
Cdd:COG4717 376 LAEAGVEDEEELRAAL--EQAEEYQELKEELEELEEQLEELLGELEEllEALDEEELEEELEELEEELEELeeeLEELRE 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 388 REKELSLEKEQ---NKRLWDRDTgnsiTIDHLRRELDDRNMEVQRLEALLKAMKNECQGQMERQMAAIqgknesLEKVSS 464
Cdd:COG4717 454 ELAELEAELEQleeDGELAELLQ----ELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPV------LERASE 523
|
....*
gi 1958677953 465 LTAQL 469
Cdd:COG4717 524 YFSRL 528
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
227-421 |
2.52e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 2.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 227 ELDTEISFLKGRIFPVEDQLEtlksESQNKIELLLQQHQdrieqlISEHEVEITGLTEKASSARSQANSVQSQLEIIQ-- 304
Cdd:COG3206 172 EARKALEFLEEQLPELRKELE----EAEAALEEFRQKNG------LVDLSEEAKLLLQQLSELESQLAEARAELAEAEar 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 305 -EQARNQNSMYMRQLSDL--ESTVSQLRSELRETKRmyedKIEELEKQLVLANSELTEARTE----RDQFSQESGNLDDQ 377
Cdd:COG3206 242 lAALRAQLGSGPDALPELlqSPVIQQLRAQLAELEA----ELAELSARYTPNHPDVIALRAQiaalRAQLQQEAQRILAS 317
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1958677953 378 LQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELD 421
Cdd:COG3206 318 LEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVE 361
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
72-307 |
2.70e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 2.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 72 KEHIERVLEEYSQQVKDLQRRLNES-NELhekQKFYLRQSVIDLQtklQEMQMERDAMADIRRRESQSQEELrNQLQNTV 150
Cdd:COG3206 170 REEARKALEFLEEQLPELRKELEEAeAAL---EEFRQKNGLVDLS---EEAKLLLQQLSELESQLAEARAEL-AEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 151 HELEAAKSLKEDMLKD--SSTQIEQLRKLMLSHEGVLQDIRSVLVDfeeasgkkicEHDSMstmhfRSLGSAISKILREL 228
Cdd:COG3206 243 AALRAQLGSGPDALPEllQSPVIQQLRAQLAELEAELAELSARYTP----------NHPDV-----IALRAQIAALRAQL 307
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958677953 229 DTEISFLKGRIfpvEDQLETLKSEsQNKIELLLQQHQDRIEQLiSEHEVEITGLTEKASSARSQANSVQSQLEIIQEQA 307
Cdd:COG3206 308 QQEAQRILASL---EAELEALQAR-EASLQAQLAQLEARLAEL-PELEAELRRLEREVEVARELYESLLQRLEEARLAE 381
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
242-742 |
2.79e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.33 E-value: 2.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 242 VEDQLETLKSESQnKIELLLQQhqdrIEQLISEH---------EVEItgltEKASSARSQANSVQSQLEIIQEQARNQNS 312
Cdd:PRK04863 798 LAERYATLSFDVQ-KLQRLHQA----FSRFIGSHlavafeadpEAEL----RQLNRRRVELERALADHESQEQQQRSQLE 868
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 313 MYMRQLSDLESTVSQLRSELRETkrmYEDKIEELEKQLvlanSELTEARterdQFSQESGNLDDQLQKLLADLHKREKEL 392
Cdd:PRK04863 869 QAKEGLSALNRLLPRLNLLADET---LADRVEEIREQL----DEAEEAK----RFVQQHGNALAQLEPIVSVLQSDPEQF 937
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 393 SLEK---EQNKRLWDRdtgnsitidhLRRELDDRNMEVQRLEALLKAmknecqgqmerQMAAIQGKNESLekVSSLTAQL 469
Cdd:PRK04863 938 EQLKqdyQQAQQTQRD----------AKQQAFALTEVVQRRAHFSYE-----------DAAEMLAKNSDL--NEKLRQRL 994
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 470 ESTKEMLRKVVEELTakkmnlessertvsdltaslQEKERAIEAtNAEITKLRSRVDLKLQELQHLKNEGDHLrNVQTEC 549
Cdd:PRK04863 995 EQAEQERTRAREQLR--------------------QAQAQLAQY-NQVLASLKSSYDAKRQMLQELKQELQDL-GVPADS 1052
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 550 EALRLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEinDRKLELQEFKILKDKKD-AKIRELeARVSD 628
Cdd:PRK04863 1053 GAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKL--ERDYHEMREQVVNAKAGwCAVLRL-VKDNG 1129
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 629 LE--LEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNNLSED--------------YEVLKRNFRN---KSEEM 689
Cdd:PRK04863 1130 VErrLHRRELAYLSADELRSMSDKALGALRLAVADNEHLRDVLRLSEDpkrperkvqfyiavYQHLRERIRQdiiRTDDP 1209
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 1958677953 690 ESTTNRLKMQLKSAQSELEQTRNTLKTMEGSdghamkVAMGMQKQITAKRGQI 742
Cdd:PRK04863 1210 VEAIEQMEIELSRLTEELTSREQKLAISSES------VANIIRKTIQREQNRI 1256
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
286-659 |
2.97e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 45.29 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 286 ASSARSQANSVQSQLEIIQEQARNQNSMYMRQlSDLESTVSQLrselrETKRMYEDKIEELEKQLVLANSELTEARTERD 365
Cdd:PRK11281 31 SNGDLPTEADVQAQLDALNKQKLLEAEDKLVQ-QDLEQTLALL-----DKIDRQKEETEQLKQQLAQAPAKLRQAQAELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 366 QFSQEsgnLDDQLQKLLADLHKREkelsLEKEQNKRL-----WDRD--TGNSITI------DHLRRELDDRNMEVQRLEA 432
Cdd:PRK11281 105 ALKDD---NDEETRETLSTLSLRQ----LESRLAQTLdqlqnAQNDlaEYNSQLVslqtqpERAQAALYANSQRLQQIRN 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 433 LLK-------AMKNECQGQMERQMAAIQGKNE----SLEKVSSLTaqlestkEMLRKVVEELTAKKMNLessERTVSDLT 501
Cdd:PRK11281 178 LLKggkvggkALRPSQRVLLQAEQALLNAQNDlqrkSLEGNTQLQ-------DLLQKQRDYLTARIQRL---EHQLQLLQ 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 502 ASLQEKERAI-EATnaeitklrsrvdlkLQELQHLKNEGDHLRN--VQTECEAlRLQMAEKdkvieiLRQQIENMTQLVG 578
Cdd:PRK11281 248 EAINSKRLTLsEKT--------------VQEAQSQDEAARIQANplVAQELEI-NLQLSQR------LLKATEKLNTLTQ 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 579 QHGRTA----GAMQVEKAqLEKEINDRKLELQEFKILKDKK-----DAKIRELEARVSDLELEKVklvnagserlravkD 649
Cdd:PRK11281 307 QNLRVKnwldRLTQSERN-IKEQISVLKGSLLLSRILYQQQqalpsADLIEGLADRIADLRLEQF--------------E 371
|
410
....*....|
gi 1958677953 650 IRQERDQLLN 659
Cdd:PRK11281 372 INQQRDALFQ 381
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
72-839 |
3.14e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.17 E-value: 3.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 72 KEHIERVLEEYSQQVKDLQRRLNESNELHEKQKfylrQSVIDLQTKLQEMQMERDAMADIRRRESQSQEELRNQ---LQN 148
Cdd:pfam01576 154 RKLLEERISEFTSNLAEEEEKAKSLSKLKNKHE----AMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQiaeLQA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 149 TVHELEAAKSLKEDMLKDSSTQIEQLrklMLSHEGVLQDIRSVLVDFEEASGKKICEhdsmstmhfRSLGSAISKILREL 228
Cdd:pfam01576 230 QIAELRAQLAKKEEELQAALARLEEE---TAQKNNALKKIRELEAQISELQEDLESE---------RAARNKAEKQRRDL 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 229 DTEISFLKGRIfpvEDQLET--LKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSArsqANSVQSQLEiiqeQ 306
Cdd:pfam01576 298 GEELEALKTEL---EDTLDTtaAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQA---LEELTEQLE----Q 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 307 ARNQNSMYMRQLSDLESTVSQLRSELR---ETKRMYEDKIEELEKQLVLANSELTEARTERDQfsqesgnLDDQLQKLLA 383
Cdd:pfam01576 368 AKRNKANLEKAKQALESENAELQAELRtlqQAKQDSEHKRKKLEGQLQELQARLSESERQRAE-------LAEKLSKLQS 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 384 DLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKNECQGQMERQMAAIQGKNESLEKVS 463
Cdd:pfam01576 441 ELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLS 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 464 SLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR 543
Cdd:pfam01576 521 TLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLE 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 544 NVQT---------------------------------------ECEALRLQMAEKDKVIEILRQQIENMTQLVGQHGRTA 584
Cdd:pfam01576 601 KKQKkfdqmlaeekaisaryaeerdraeaeareketralslarALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNV 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 585 GAMQVEKAQLEKEINDRKLELQEFKI-LKDKKDAKI--------------RELEARVSDLELEKVKLVNAGSERLRAVKD 649
Cdd:pfam01576 681 HELERSKRALEQQVEEMKTQLEELEDeLQATEDAKLrlevnmqalkaqfeRDLQARDEQGEEKRRQLVKQVRELEAELED 760
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 650 IRQERDQLLNEVKTSRTELNNLSEDYEVLKRNfrnkSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEGSDGHAMKVAM 729
Cdd:pfam01576 761 ERKQRAQAVAAKKKLELDLKELEAQIDAANKG----REEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLK 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 730 GMQKQI--------TAKRGQIDALQSKVQFLEEaVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRL 801
Cdd:pfam01576 837 NLEAELlqlqedlaASERARRQAQQERDELADE-IASGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKS 915
|
810 820 830 840
....*....|....*....|....*....|....*....|.
gi 1958677953 802 KEKVANM--EVALDKASLQFAE-CQDIIQRQEQEsVRLKLQ 839
Cdd:pfam01576 916 TLQVEQLttELAAERSTSQKSEsARQQLERQNKE-LKAKLQ 955
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
243-713 |
3.26e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 243 EDQLETLKsesqNKIELL--LQQHQDRIEQL---ISEHEVEITGLT-EKASSARSQANSVQSQLEiiQEQARNQnsmymR 316
Cdd:COG4913 241 HEALEDAR----EQIELLepIRELAERYAAArerLAELEYLRAALRlWFAQRRLELLEAELEELR--AELARLE-----A 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 317 QLSDLESTVSQLRSELRETKRMYE----DKIEELEKQLVLANSELTEARTERDQFSQESGNLD-------DQLQKLLADL 385
Cdd:COG4913 310 ELERLEARLDALREELDELEAQIRgnggDRLEQLEREIERLERELEERERRRARLEALLAALGlplpasaEEFAALRAEA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 386 HKREKEL-SLEKEQNKRLWDRDTgnsiTIDHLRRELDDRNMEVQRLE-----------ALLKAMKNECqGQMERQM--AA 451
Cdd:COG4913 390 AALLEALeEELEALEEALAEAEA----ALRDLRRELRELEAEIASLErrksniparllALRDALAEAL-GLDEAELpfVG 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 452 --IQGKNE------SLEKV---------------SSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKE 508
Cdd:COG4913 465 elIEVRPEeerwrgAIERVlggfaltllvppehyAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKP 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 509 RAIEAT-NAEitkLRSRVDLK----LQELQH----------LKNEGDH----------------------LRNVQTECEA 551
Cdd:COG4913 545 HPFRAWlEAE---LGRRFDYVcvdsPEELRRhpraitragqVKGNGTRhekddrrrirsryvlgfdnrakLAALEAELAE 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 552 LRLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGA--MQVEKAQLEKEINDRKLELQEFkilkDKKDAKIRELEARVSDL 629
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERREALQRLAEYswDEIDVASAEREIAELEAELERL----DASSDDLAALEEQLEEL 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 630 ELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEV--------------LKRNFRNKSEEMESTTNR 695
Cdd:COG4913 698 EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLelralleerfaaalGDAVERELRENLEERIDA 777
|
570
....*....|....*...
gi 1958677953 696 LKMQLKSAQSELEQTRNT 713
Cdd:COG4913 778 LRARLNRAEEELERAMRA 795
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
565-771 |
3.81e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 3.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 565 ILRQQIEN-MTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKD---AKIRELEARVSDL--ELEKVKLVN 638
Cdd:COG4717 46 MLLERLEKeADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEeleEELEELEAELEELreELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 639 AGSERLRAVKDIRQERDQL---LNEVKTSRTELNNLSEDYEVLKRNFRNKSEEMESTTNRLKMQLKSAQSELEQTRNTLk 715
Cdd:COG4717 126 QLLPLYQELEALEAELAELperLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEEL- 204
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958677953 716 tmegsdghamkvamgmQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKS 771
Cdd:COG4717 205 ----------------QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEER 244
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
603-792 |
4.12e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 4.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 603 LELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNnlsedyevlkrnf 682
Cdd:COG1579 10 LDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIK------------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 683 RNKSEEMESTTNRlkmQLKSAQSELEQTRNTLKTMEgsdghamKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTSANKE 762
Cdd:COG1579 77 KYEEQLGNVRNNK---EYEALQKEIESLKRRISDLE-------DEILELMERIEELEEELAELEAELAELEAELEEKKAE 146
|
170 180 190
....*....|....*....|....*....|
gi 1958677953 763 khfLKEEKSKLSQELSTVATEKNKMAGELE 792
Cdd:COG1579 147 ---LDEELAELEAELEELEAEREELAAKIP 173
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
261-715 |
4.22e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 4.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 261 LQQHQDRIEQLISEHEVEITGLTEKassaRSQANSVQSQLEIIQEQARNQnsmymRQLSDLESTVSQLRSELREtkrmye 340
Cdd:COG4717 93 LQEELEELEEELEELEAELEELREE----LEKLEKLLQLLPLYQELEALE-----AELAELPERLEELEERLEE------ 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 341 dkIEELEKQLVLANSELTEARTERDQ-FSQESGNLDDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgnsitIDHLRRE 419
Cdd:COG4717 158 --LRELEEELEELEAELAELQEELEElLEQLSLATEEELQDLAEELEELQQRLAELEEE--------------LEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 420 LDDRNMEVQRLEALLKAMKNECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSD 499
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 500 -LTASLQEKERAIEATNAEITKLRSRV----DLKLQELQHLKNEGDHLRNVQTECEALRLQMAekdkvIEILRQQIENMT 574
Cdd:COG4717 302 kEAEELQALPALEELEEEELEELLAALglppDLSPEELLELLDRIEELQELLREAEELEEELQ-----LEELEQEIAALL 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 575 QLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEfkilkdKKDAKIRELEARVSDLELEKVKlvNAGSERLRAVKDIRQER 654
Cdd:COG4717 377 AEAGVEDEEELRAALEQAEEYQELKEELEELEE------QLEELLGELEELLEALDEEELE--EELEELEEELEELEEEL 448
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958677953 655 DQLLNEVKTSRTELNNLSED--YEVLKRNFRNKSEEMESTTNRlKMQLKSAQSELEQTRNTLK 715
Cdd:COG4717 449 EELREELAELEAELEQLEEDgeLAELLQELEELKAELRELAEE-WAALKLALELLEEAREEYR 510
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
242-671 |
4.24e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.52 E-value: 4.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 242 VEDQLETLKSESQNKIE--LLLQQHQDRIEQL--ISEHEVEITGLTEKASSARSQANSVQSQLEIIQEQArnqNSMYMRQ 317
Cdd:PRK11281 41 VQAQLDALNKQKLLEAEdkLVQQDLEQTLALLdkIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDN---DEETRET 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 318 LSDLesTVSQLRSELRETkrmyEDKIEELEKQLVLANSELTEART--ERDQF--------SQESGNL------------D 375
Cdd:PRK11281 118 LSTL--SLRQLESRLAQT----LDQLQNAQNDLAEYNSQLVSLQTqpERAQAalyansqrLQQIRNLlkggkvggkalrP 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 376 DQLQKLLADLHKrekeLSLEKEQNKRLWdrdTGNSITIDHLRRELDDRNMEVQRLEALLKAMKNecqgqmerqmaAIQGK 455
Cdd:PRK11281 192 SQRVLLQAEQAL----LNAQNDLQRKSL---EGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQE-----------AINSK 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 456 N--ESLEKVssltAQLESTKEMLRKVVEELTAKKM--NLESSERTVsdltaslqekeRAIEATNAeitklrsrvdLKLQE 531
Cdd:PRK11281 254 RltLSEKTV----QEAQSQDEAARIQANPLVAQELeiNLQLSQRLL-----------KATEKLNT----------LTQQN 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 532 LQhLKNEGDHL----RNVQTECEALR--LQMAEkdkvieILRQQIENMTQLVgqhgrtagamqvEKAQLEKEINDrkLEL 605
Cdd:PRK11281 309 LR-VKNWLDRLtqseRNIKEQISVLKgsLLLSR------ILYQQQQALPSAD------------LIEGLADRIAD--LRL 367
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958677953 606 QEFKILKdKKDaKIRELEARVSDLELEKVKLVNAgserlravkdirQERDQLLNEVKTSRT-------ELNNL 671
Cdd:PRK11281 368 EQFEINQ-QRD-ALFQPDAYIDKLEAGHKSEVTD------------EVRDALLQLLDERRElldqlnkQLNNQ 426
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
223-451 |
4.26e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.23 E-value: 4.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 223 KILRELDTeisFLKGRIFPVEDQLETLkSESQNKIELLLQQHQDRIEQL-------ISEHEVEITGLTEKASSARSQANS 295
Cdd:PHA02562 163 SVLSEMDK---LNKDKIRELNQQIQTL-DMKIDHIQQQIKTYNKNIEEQrkkngenIARKQNKYDELVEEAKTIKAEIEE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 296 VQSQLEIIQEQARNQNSmymrQLSDLESTVSQLRSELRETKR---MYED----------------KIEELEKQLVLANSE 356
Cdd:PHA02562 239 LTDELLNLVMDIEDPSA----ALNKLNTAAAKIKSKIEQFQKvikMYEKggvcptctqqisegpdRITKIKDKLKELQHS 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 357 LTEARTERDQFSQESGNLDDQLQKLLA---DLHKREKELSLEKEQNKRLWDrdtgnsiTIDHLRRELDDRNMEVQRLEAL 433
Cdd:PHA02562 315 LEKLDTAIDELEEIMDEFNEQSKKLLElknKISTNKQSLITLVDKAKKVKA-------AIEELQAEFVDNAEELAKLQDE 387
|
250 260
....*....|....*....|..
gi 1958677953 434 LKAMKNECQG----QMERQMAA 451
Cdd:PHA02562 388 LDKIVKTKSElvkeKYHRGIVT 409
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
216-402 |
4.93e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 4.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 216 SLGSAISKILRELDTEISFLKGRIFPVEDQLETLKSEsQNKIELLLQQHQDRI---EQLISEHEVEITGLTEKASSARSQ 292
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKE-EKALLKQLAALERRIaalARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 293 ANSVQSQLEIIQEQARNQ-NSMYM--------------------RQLSDLESTVSQLRS---ELRETKRMYEDKIEELEK 348
Cdd:COG4942 92 IAELRAELEAQKEELAELlRALYRlgrqpplalllspedfldavRRLQYLKYLAPARREqaeELRADLAELAALRAELEA 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958677953 349 QLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRL 402
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
587-814 |
6.21e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.85 E-value: 6.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 587 MQVEKAQLEKEINDRkLELQEF----KILKDKkdakIRELEARVSDLEL------EKVKLVNAGSERLRAVKDIRQER-- 654
Cdd:PHA02562 145 MQLSAPARRKLVEDL-LDISVLsemdKLNKDK----IRELNQQIQTLDMkidhiqQQIKTYNKNIEEQRKKNGENIARkq 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 655 ---DQLLNEVKTSRTELNNLSEDYEVLKRNFRNKSEEMESTTN---RLKMQLKSAQSELE--QTRNTLKT-MEGSDGHAM 725
Cdd:PHA02562 220 nkyDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTaaaKIKSKIEQFQKVIKmyEKGGVCPTcTQQISEGPD 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 726 KVAMGMQK--QITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKE 803
Cdd:PHA02562 300 RITKIKDKlkELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAE 379
|
250
....*....|.
gi 1958677953 804 KVANMEVALDK 814
Cdd:PHA02562 380 ELAKLQDELDK 390
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
268-403 |
6.93e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.69 E-value: 6.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 268 IEQLISEHEVEITGLTEKASSARSQANSVQSqleiiqeqarnqnSMYMRQLSDLESTVSQLRSELREtkrmYEDKIEELE 347
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEEREL-------------TEEEEEIRRLEEQVERLEAEVEE----LEAELEEKD 440
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958677953 348 KQLVLANSELTEARTERDQ---FSQESGNLD---DQLQKLLADLHKREKELSLEKEQNKRLW 403
Cdd:COG2433 441 ERIERLERELSEARSEERReirKDREISRLDreiERLERELEEERERIEELKRKLERLKELW 502
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
113-308 |
6.98e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 6.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 113 DLQTKLQEMQMERDAMADIRRRESQSQEELR------NQLQNTVHELEAAKSLKEDMLKDSSTQIEQLRKLMLSHEGVLQ 186
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAalerriAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 187 DIRSVLVDFEEASGKKICEHDSMSTMHFRSLgSAISKILRELDTEISFLKGRIFPVEDQLETLKSESQNKIELL--LQQH 264
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPEDFLDAVRRL-QYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLaeLEEE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1958677953 265 QDRIEQLISEHEVEITGLTEKASSARSQANSVQSQLEIIQEQAR 308
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
461-646 |
7.36e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 7.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 461 KVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRvdlklqeLQHLKNEgD 540
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQ-------LGNVRNN-K 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 541 HLRNVQTECEALRLQMAEKDKVIEILRQQIEnmtqlvgqhgrtagAMQVEKAQLEKEINDRKLELQEfkiLKDKKDAKIR 620
Cdd:COG1579 90 EYEALQKEIESLKRRISDLEDEILELMERIE--------------ELEEELAELEAELAELEAELEE---KKAELDEELA 152
|
170 180
....*....|....*....|....*.
gi 1958677953 621 ELEARVSDLELEKVKLVNAGSERLRA 646
Cdd:COG1579 153 ELEAELEELEAEREELAAKIPPELLA 178
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
226-718 |
7.52e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.89 E-value: 7.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 226 RELDTEISFLKGRIFPVEDQLETLKSESQNKIELLLQQHQDRIEQLISEHEvEITGLT---------EKASSARSQANSV 296
Cdd:TIGR01612 817 KEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHE-QFAELTnkikaeisdDKLNDYEKKFNDS 895
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 297 QSQL-EI---IQEQARNQNSM-----YMRQLSDLESTVSQLRSE--------------LRETKRMYEDKIEELEKQLVLA 353
Cdd:TIGR01612 896 KSLInEInksIEEEYQNINTLkkvdeYIKICENTKESIEKFHNKqnilkeilnknidtIKESNLIEKSYKDKFDNTLIDK 975
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 354 NSELTEARTERDQFSQESGNldDQLQKLLADLHKrekelSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEAL 433
Cdd:TIGR01612 976 INELDKAFKDASLNDYEAKN--NELIKYFNDLKA-----NLGKNKENMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIA 1048
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 434 LKAMKNECQGQMERQMaaiqGKN------ESLEKVSSLTAQLESTKEMLR-------------KVVEELTAKKMNLESSE 494
Cdd:TIGR01612 1049 IHTSIYNIIDEIEKEI----GKNiellnkEILEEAEINITNFNEIKEKLKhynfddfgkeeniKYADEINKIKDDIKNLD 1124
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 495 RTVSDLTASLQE----KERAIEATNAEITKLRSRVDLKL---------QELQHLKNEGDHLRNVQTECEALRLQMA--EK 559
Cdd:TIGR01612 1125 QKIDHHIKALEEikkkSENYIDEIKAQINDLEDVADKAIsnddpeeieKKIENIVTKIDKKKNIYDEIKKLLNEIAeiEK 1204
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 560 DKV-----------------------IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEIN---DRKLELQEFKILKD 613
Cdd:TIGR01612 1205 DKTsleevkginlsygknlgklflekIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGiemDIKAEMETFNISHD 1284
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 614 K-KDAKI--RELEARVSDLELEKVKLVNAGSERlRAVKDIRQERDQLLNEVKTSRTE----LNNLSEDYEVLKRN-FRNK 685
Cdd:TIGR01612 1285 DdKDHHIisKKHDENISDIREKSLKIIEDFSEE-SDINDIKKELQKNLLDAQKHNSDinlyLNEIANIYNILKLNkIKKI 1363
|
570 580 590
....*....|....*....|....*....|...
gi 1958677953 686 SEEMESTTNRLKMQLKSAQSELEQTRNTLKTME 718
Cdd:TIGR01612 1364 IDEVKEYTKEIEENNKNIKDELDKSEKLIKKIK 1396
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
109-809 |
9.78e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 9.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 109 QSVIDLQTKLQEMQMERDA-MADIRRRESQSQEELRNQLQNTVHELEAAKSLKEDMLKDSSTQIEQLRKLMLSHEGVLQD 187
Cdd:pfam01576 327 QEVTELKKALEEETRSHEAqLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHK 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 188 IRSVLVDFEEASGKKicehdSMSTMHFRSLGSAISKILRELDTEISFLkgrifpveDQLETLKSESQNKIELLLQQHQDR 267
Cdd:pfam01576 407 RKKLEGQLQELQARL-----SESERQRAELAEKLSKLQSELESVSSLL--------NEAEGKNIKLSKDVSSLESQLQDT 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 268 IEQLISEHEVEITgLTEKASSARSQANSVQSQLEIIQEQARNQNsmymRQLSDLESTVSQLRSELRE---TKRMYEDKIE 344
Cdd:pfam01576 474 QELLQEETRQKLN-LSTRLRQLEDERNSLQEQLEEEEEAKRNVE----RQLSTLQAQLSDMKKKLEEdagTLEALEEGKK 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 345 ELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADL-HKREKELSLEKEQNKrlWDRDTGNSITIDHLRRELDDR 423
Cdd:pfam01576 549 RLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLdHQRQLVSNLEKKQKK--FDQMLAEEKAISARYAEERDR 626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 424 nMEVQRLEALLKAMknecqgQMERQMAAIQGKNESLEKVS-SLTAQLE---STKEMLRKVVEELTAKKMNLESSertVSD 499
Cdd:pfam01576 627 -AEAEAREKETRAL------SLARALEEALEAKEELERTNkQLRAEMEdlvSSKDDVGKNVHELERSKRALEQQ---VEE 696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 500 LTASLQEKERAIEATnaEITKLRSRVDLKLQELQHLknegdhlRNVQTECEalrlQMAEKDKviEILRQQIENMTQLVGQ 579
Cdd:pfam01576 697 MKTQLEELEDELQAT--EDAKLRLEVNMQALKAQFE-------RDLQARDE----QGEEKRR--QLVKQVRELEAELEDE 761
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 580 HGRTAGAMQVEKaQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLElekvklvnagserlRAVKDIRQERDQLLN 659
Cdd:pfam01576 762 RKQRAQAVAAKK-KLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQ--------------RELEEARASRDEILA 826
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 660 EVKTSRTELNNLSEDYEVLkrnfrnksEEMESTTNRLKMQLKSAQSELEQtrntlktmEGSDGHAMKVAMGMQKQitakr 739
Cdd:pfam01576 827 QSKESEKKLKNLEAELLQL--------QEDLAASERARRQAQQERDELAD--------EIASGASGKSALQDEKR----- 885
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958677953 740 gqidALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQ-------ELSTVATEKNKMAGELEVLRSQERRLKEKVANME 809
Cdd:pfam01576 886 ----RLEARIAQLEEELEEEQSNTELLNDRLRKSTLqveqlttELAAERSTSQKSESARQQLERQNKELKAKLQEME 958
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
242-399 |
1.06e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 242 VEDQLETLKSEsQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSA-----RSQANSVQSQLEIIQEQARNQNSMYMR 316
Cdd:COG3206 217 LLQQLSELESQ-LAEARAELAEAEARLAALRAQLGSGPDALPELLQSPviqqlRAQLAELEAELAELSARYTPNHPDVIA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 317 QLSDLESTVSQLRSELRETKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLD------DQLQKLLADLHKREK 390
Cdd:COG3206 296 LRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRrlerevEVARELYESLLQRLE 375
|
....*....
gi 1958677953 391 ELSLEKEQN 399
Cdd:COG3206 376 EARLAEALT 384
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
473-848 |
1.12e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.17 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 473 KEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQE----LQHLKNE-GDHLRNVQT 547
Cdd:pfam05483 161 KETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEdhekIQHLEEEyKKEINDKEK 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 548 ECEALRLQMAEKDK-------VIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEF----KILKDKKD 616
Cdd:pfam05483 241 QVSLLLIQITEKENkmkdltfLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSmstqKALEEDLQ 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 617 AKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKRNFRNKSEEMESTTnRL 696
Cdd:pfam05483 321 IATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMT-KF 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 697 KMQLKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQE 776
Cdd:pfam05483 400 KNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTE 479
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958677953 777 LSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASlqfaecQDIIQRQEQESVRLKLQHTLDVKELQ 848
Cdd:pfam05483 480 LEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQ------EDIINCKKQEERMLKQIENLEEKEMN 545
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
504-669 |
1.14e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 504 LQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhLRNVQTECEALRLQMAEKDKVIEILRQQIENMTQLVGQhgrt 583
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEAR---LEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGN---- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 584 agamqvekAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKT 663
Cdd:COG1579 85 --------VRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEA 156
|
....*.
gi 1958677953 664 SRTELN 669
Cdd:COG1579 157 ELEELE 162
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
366-536 |
1.16e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 42.65 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 366 QF--SQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitIDHLRRELDDRNMEVQRLEALLkamkNECQG 443
Cdd:PRK09039 41 QFflSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDS-------VANLRASLSAAEAERSRLQALL----AELAG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 444 QMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTakkmnlesseRTVSDLTASLQEKERAIEATNAEITKLRS 523
Cdd:PRK09039 110 AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALR----------RQLAALEAALDASEKRDRESQAKIADLGR 179
|
170
....*....|....
gi 1958677953 524 RVDLKL-QELQHLK 536
Cdd:PRK09039 180 RLNVALaQRVQELN 193
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
219-661 |
1.18e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.89 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 219 SAISKILRELDTEISFLKGRIFPVEDQLETLKSESqnkiELLLQQHQDRIEQL--------------------ISEHEVE 278
Cdd:pfam10174 229 KALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNG----LLHTEDREEEIKQMevykshskfmknkidqlkqeLSKKESE 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 279 ITGLTEKASSARSQANSVQSQLEIIQEQ--ARNQNSMYM----------------------RQLSDLESTVSQLRSELRE 334
Cdd:pfam10174 305 LLALQTKLETLTNQNSDCKQHIEVLKESltAKEQRAAILqtevdalrlrleekesflnkktKQLQDLTEEKSTLAGEIRD 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 335 TKRMYE----------DKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLwD 404
Cdd:pfam10174 385 LKDMLDvkerkinvlqKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQRERE-D 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 405 RDtgnsitidhLRRELDDRNMEVQRLEALLKAMKNECQGQmERQMAAIQGKNESL--------EKVSSLTAQLESTKEML 476
Cdd:pfam10174 464 RE---------RLEELESLKKENKDLKEKVSALQPELTEK-ESSLIDLKEHASSLassglkkdSKLKSLEIAVEQKKEEC 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 477 RKVVEELTaKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALRL-Q 555
Cdd:pfam10174 534 SKLENQLK-KAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLrQ 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 556 MAEKDKVIEILrqqienmtQLVGQHGRTAGAMQVEKAQLEKEI---NDRKLELQEFKILKDKKDAKIRELEARVSDLELe 632
Cdd:pfam10174 613 MKEQNKKVANI--------KHGQQEMKKKGAQLLEEARRREDNladNSQQLQLEELMGALEKTRQELDATKARLSSTQQ- 683
|
490 500
....*....|....*....|....*....
gi 1958677953 633 kvklvnAGSERLRAVKDIRQERDQLLNEV 661
Cdd:pfam10174 684 ------SLAEKDGHLTNLRAERRKQLEEI 706
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
586-837 |
1.28e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 42.21 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 586 AMQVEKAQLEKEINDRKLELQEFKilkdkkdAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSR 665
Cdd:COG1340 5 ELSSSLEELEEKIEELREEIEELK-------EKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 666 TELNNLSEDYEVLKRNFRNKSEEMEStTNRLKMQLKSAQSELEQTRNTLKTMEGSDGHAMKVAmgmqKQITAKRGQIDAL 745
Cdd:COG1340 78 EERDELNEKLNELREELDELRKELAE-LNKAGGSIDKLRKEIERLEWRQQTEVLSPEEEKELV----EKIKELEKELEKA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 746 QSKVQFLEEAVTSANKEKHfLKEEKSKLSQELSTVATE----KNKMA---GELEVLRSQERRLKEKVANMEVALDKASLQ 818
Cdd:COG1340 153 KKALEKNEKLKELRAELKE-LRKEAEEIHKKIKELAEEaqelHEEMIelyKEADELRKEADELHKEIVEAQEKADELHEE 231
|
250
....*....|....*....
gi 1958677953 819 FAECQDIIQRQEQESVRLK 837
Cdd:COG1340 232 IIELQKELRELRKELKKLR 250
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
586-836 |
1.49e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 586 AMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSR 665
Cdd:pfam07888 49 AQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 666 TELNNLSEDYEVLKRNFRNKSEEMESTTNRLK---MQLKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQI 742
Cdd:pfam07888 129 ARIRELEEDIKTLTQRVLERETELERMKERAKkagAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQV 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 743 DALQSKVQFLEEAVTSANK---EKHFLKEEKSK--------------LSQELSTVATEKNKMAGELEVLRSQERRLKEKV 805
Cdd:pfam07888 209 LQLQDTITTLTQKLTTAHRkeaENEALLEELRSlqerlnaserkvegLGEELSSMAAQRDRTQAELHQARLQAAQLTLQL 288
|
250 260 270
....*....|....*....|....*....|..
gi 1958677953 806 ANMEVALDKASLQFA-ECQDIIQRQEQESVRL 836
Cdd:pfam07888 289 ADASLALREGRARWAqERETLQQSAEADKDRI 320
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
477-804 |
1.51e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 477 RKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKL--------RSRVDLKLQELQHLKNEGDH---LRNV 545
Cdd:pfam07888 55 RQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELeekykelsASSEELSEEKDALLAQRAAHearIREL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 546 QTECEALRLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEAR 625
Cdd:pfam07888 135 EEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDT 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 626 VSDLelekvklvnagSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKRNFRNKSEEMESTTNRL-KMQLKSAQ 704
Cdd:pfam07888 215 ITTL-----------TQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELhQARLQAAQ 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 705 SELEQTRNTLKTMEGSdGHAMKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEkskLSQELSTVATEK 784
Cdd:pfam07888 284 LTLQLADASLALREGR-ARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREKLEVE---LGREKDCNRVQL 359
|
330 340
....*....|....*....|.
gi 1958677953 785 NKMAGELEVLRSQERRL-KEK 804
Cdd:pfam07888 360 SESRRELQELKASLRVAqKEK 380
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
340-538 |
1.58e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 340 EDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKEL-SLEKEqnkrlwdrdtgnsitIDHLRR 418
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIdKLQAE---------------IAEAEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 419 ELDDRNmevQRLEALLKAMKNecQGQMERQMAAIQGKN---ESLEKVSSLTAQLESTKEMLRKV---VEELTAKKMNLES 492
Cdd:COG3883 80 EIEERR---EELGERARALYR--SGGSVSYLDVLLGSEsfsDFLDRLSALSKIADADADLLEELkadKAELEAKKAELEA 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958677953 493 SERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE 538
Cdd:COG3883 155 KLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAE 200
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
479-621 |
1.73e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 479 VVEEltAKKMNLESSERtVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhlrnVQTECEALRLQMAE 558
Cdd:PRK00409 503 IIEE--AKKLIGEDKEK-LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEK------LQEEEDKLLEEAEK 573
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958677953 559 K-DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLE--KEINDRKLELQEFKILKDKKDAKIRE 621
Cdd:PRK00409 574 EaQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEarKRLNKANEKKEKKKKKQKEKQEELKV 639
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
89-464 |
1.75e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.19 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 89 LQRRLNESNELHEKQKFYLRQSVIDlqtkLQEMQMERDAMaDIRRRESQSQ-EELRNQLQNTVHELEAAKSLKEDMLKDS 167
Cdd:pfam07888 36 LEECLQERAELLQAQEAANRQREKE----KERYKRDREQW-ERQRRELESRvAELKEELRQSREKHEELEEKYKELSASS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 168 STQIEQLRKLMLSHEGVLQDIRSVLVDFEEASGKKICEHDSMSTMHFRSLGSAISKilRELDTEISFLKGRIFPVEDQLE 247
Cdd:pfam07888 111 EELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQR--KEEEAERKQLQAKLQQTEEELR 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 248 TLKSESQNkiellLQQHQDRIEQLISEHEVEITGLTEKASSARsqansvqsQLEIIQEQARNQNSMYMRQLSDLESTVSQ 327
Cdd:pfam07888 189 SLSKEFQE-----LRNSLAQRDTQVLQLQDTITTLTQKLTTAH--------RKEAENEALLEELRSLQERLNASERKVEG 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 328 LRSELRETKRMYEDKIEELEK---QLVLANSELTEA----RTERDQFSQESGNL-------DDQLQKLLADLHKREKELS 393
Cdd:pfam07888 256 LGEELSSMAAQRDRTQAELHQarlQAAQLTLQLADAslalREGRARWAQERETLqqsaeadKDRIEKLSAELQRLEERLQ 335
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958677953 394 LEKEQNKRLwdrDTGNSITIDHLRRELDDRNMEVQRLEALLK-AMKNECQGQMERQ--MAAIQGKNESLEKVSS 464
Cdd:pfam07888 336 EERMEREKL---EVELGREKDCNRVQLSESRRELQELKASLRvAQKEKEQLQAEKQelLEYIRQLEQRLETVAD 406
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
221-370 |
1.80e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 221 ISKILRELDTEISFLKGRIFPVEDQLETLKSESQNkiellLQQHQDRIEQLISEHEVEITGLTEKASSARS--QANSVQS 298
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELED-----LEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYEALQK 96
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958677953 299 QLEIIQEQARNQNSMY---MRQLSDLESTVSQLRSELRETKRMYEDKIEELEKQLVLANSELTEARTERDQFSQE 370
Cdd:COG1579 97 EIESLKRRISDLEDEIlelMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
243-604 |
1.86e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 243 EDQLETLKSESQNKIELLL-----QQHQDRI----EQLISEHEVeiTGLTEKASSARSQANSVQSQLEIIQEQARNQNSM 313
Cdd:COG3096 784 EKRLEELRAERDELAEQYAkasfdVQKLQRLhqafSQFVGGHLA--VAFAPDPEAELAALRQRRSELERELAQHRAQEQQ 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 314 YMRQLSDLESTVSQLRSELRETKRM----YEDKIEELEKQLvlanSELTEARTERDQFSQESGNLDDQLQKLLADLHKRE 389
Cdd:COG3096 862 LRQQLDQLKEQLQLLNKLLPQANLLadetLADRLEELREEL----DAAQEAQAFIQQHGKALAQLEPLVAVLQSDPEQFE 937
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 390 kELSLEKEQnkrlwdrdtgnsitIDHLRRELDdrnmevQRLEALLKAMKNecqgqmeRQMAAIQGKNESLEKVSSLTAQL 469
Cdd:COG3096 938 -QLQADYLQ--------------AKEQQRRLK------QQIFALSEVVQR-------RPHFSYEDAVGLLGENSDLNEKL 989
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 470 estKEMLRKVVEELTAKKMNLEssertvsdltaslQEKERAIEAtNAEITKLRSRVDLKLQELQHLKNEGDHLrNVQTEC 549
Cdd:COG3096 990 ---RARLEQAEEARREAREQLR-------------QAQAQYSQY-NQVLASLKSSRDAKQQTLQELEQELEEL-GVQADA 1051
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1958677953 550 EALRLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMqvekAQLEKEIndRKLE 604
Cdd:COG3096 1052 EAEERARIRRDELHEELSQNRSRRSQLEKQLTRCEAEM----DSLQKRL--RKAE 1100
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
492-713 |
1.90e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 492 SSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhLRNVQTECEALRLQMAEKDKVIEILRQQIE 571
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAE---LEALQAEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 572 NMTQLVGQHGRTAGAMQV-----------EKAQLEKEINDRKLE-LQEFKILKDKKDAKIRELEARVSDLELEKVKLVNA 639
Cdd:COG3883 90 ERARALYRSGGSVSYLDVllgsesfsdflDRLSALSKIADADADlLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958677953 640 GSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKRNFRNKSEEMESTTNRLKMQLKSAQSELEQTRNT 713
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 243
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
560-762 |
2.05e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 560 DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLElEKVK---- 635
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERR-EELGerar 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 636 --------------LVNAGS-----ERLRAVKDIRQERDQLLNEVKTSRTELNNlsedyevLKRNFRNKSEEMESTTNRL 696
Cdd:COG3883 94 alyrsggsvsyldvLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEA-------KKAELEAKLAELEALKAEL 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958677953 697 KMQLKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTSANKE 762
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
460-809 |
2.24e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 42.15 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 460 EKVSSLTAQLESTKEMLRKVVEELTakkmNLESSERTVSDLTASLQEKERAI-----------EATNAEITKLRSRVDLK 528
Cdd:pfam06160 86 KALDEIEELLDDIEEDIKQILEELD----ELLESEEKNREEVEELKDKYRELrktllanrfsyGPAIDELEKQLAEIEEE 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 529 LQELQHLKNEGDHLrnvqtecealrlqmaEKDKVIEILRQQIENMTQLVGQ-HGRTAGAMQVEKAQLEkEIND--RKLEL 605
Cdd:pfam06160 162 FSQFEELTESGDYL---------------EAREVLEKLEEETDALEELMEDiPPLYEELKTELPDQLE-ELKEgyREMEE 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 606 QEFKILKDKKDAKIRELEARVSDLE--LEKVKLVNAgSERLRAVKD-IRQERDQLLNEVKTSRTELNNLSEDYEVL---K 679
Cdd:pfam06160 226 EGYALEHLNVDKEIQQLEEQLEENLalLENLELDEA-EEALEEIEErIDQLYDLLEKEVDAKKYVEKNLPEIEDYLehaE 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 680 RNFRNKSEEMEsttnRLKMQLKSAQSELEQTRNTLKtmegsdghamkvamgmqkqitakrgQIDALQSKVQFLEEAVtsA 759
Cdd:pfam06160 305 EQNKELKEELE----RVQQSYTLNENELERVRGLEK-------------------------QLEELEKRYDEIVERL--E 353
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1958677953 760 NKEKHF--LKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 809
Cdd:pfam06160 354 EKEVAYseLQEELEEILEQLEEIEEEQEEFKESLQSLRKDELEAREKLDEFK 405
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
244-576 |
2.44e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.12 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 244 DQLETLKSESQNkiellLQQHQDRIEQLISEHEVEITGLTEKASSARSQA---NSVQSQLEIIQEQARNQNSMYMRQLSD 320
Cdd:pfam10174 468 EELESLKKENKD-----LKEKVSALQPELTEKESSLIDLKEHASSLASSGlkkDSKLKSLEIAVEQKKEECSKLENQLKK 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 321 LESTVSQLRselreTKRMYEDKIEELEKQLVLANSELTEARTErdqfsqesgnlddqLQKLLADLHKREKELSLEKEQNK 400
Cdd:pfam10174 543 AHNAEEAVR-----TNPEINDRIRLLEQEVARYKEESGKAQAE--------------VERLLGILREVENEKNDKDKKIA 603
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 401 RLWDRDTgnsitidhlrRELDDRNMEVQRLEALLKAMKNECQGQMERQMaaiqgKNESLEKVSSLTAQLESTKEMLRKVV 480
Cdd:pfam10174 604 ELESLTL----------RQMKEQNKKVANIKHGQQEMKKKGAQLLEEAR-----RREDNLADNSQQLQLEELMGALEKTR 668
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 481 EELTAKKMNLESSERtvsdltaSLQEKERAIEATNAEITK-LRSRVDLKLQELQHLKNEGD-----------HLRNVQTE 548
Cdd:pfam10174 669 QELDATKARLSSTQQ-------SLAEKDGHLTNLRAERRKqLEEILEMKQEALLAAISEKDaniallelsssKKKKTQEE 741
|
330 340
....*....|....*....|....*...
gi 1958677953 549 CEALRlqmAEKDKVIEILRQQIENMTQL 576
Cdd:pfam10174 742 VMALK---REKDRLVHQLKQQTQNRMKL 766
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
334-837 |
2.53e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 334 ETKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITI 413
Cdd:TIGR04523 68 EKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEI 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 414 DHLRRELDDRNMEVQRLEALLKAMKNEcQGQMERQmaaIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLESS 493
Cdd:TIGR04523 148 KKKEKELEKLNNKYNDLKKQKEELENE-LNLLEKE---KLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISEL 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 494 ERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdhLRNVQTECEALRLQMAEKDKVIEILRQQIENM 573
Cdd:TIGR04523 224 KKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQ---LSEKQKELEQNNKKIKELEKQLNQLKSEISDL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 574 TQlvgqhgrtaGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQE 653
Cdd:TIGR04523 301 NN---------QKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 654 RDQLLNEVKTSRTELNNLsedyEVLKRNFRNKSEEMESTTNRLKMQLKSAQSELEQtrntlktmegsdghamkvamgmqk 733
Cdd:TIGR04523 372 IEKLKKENQSYKQEIKNL----ESQINDLESKIQNQEKLNQQKDEQIKKLQQEKEL------------------------ 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 734 qitakrgqidaLQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALD 813
Cdd:TIGR04523 424 -----------LEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELK 492
|
490 500
....*....|....*....|....
gi 1958677953 814 KASLQFAECQDIIQRQEQESVRLK 837
Cdd:TIGR04523 493 SKEKELKKLNEEKKELEEKVKDLT 516
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
73-346 |
2.54e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 73 EHIERVLEEYSQQVKdLQRRLNESNELHEKqkfylrqsvIDLQTKLQEMQMERDAMADIRRRESQSQ-EELRNQL----- 146
Cdd:COG3096 334 DHLNLVQTALRQQEK-IERYQEDLEELTER---------LEEQEEVVEEAAEQLAEAEARLEAAEEEvDSLKSQLadyqq 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 147 ------------QNTVHELEAAKSL----------KEDMLKDSSTQIEQLRKLMLSHEGVLQDIRSVLVDFEEASG--KK 202
Cdd:COG3096 404 aldvqqtraiqyQQAVQALEKARALcglpdltpenAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYElvCK 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 203 ICEHDSMSTMHfrslgSAISKILRELdTEISFLKGRIFPVEDQLETL--KSESQNKIELLLQQ----------HQDRIEQ 270
Cdd:COG3096 484 IAGEVERSQAW-----QTARELLRRY-RSQQALAQRLQQLRAQLAELeqRLRQQQNAERLLEEfcqrigqqldAAEELEE 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 271 LISEHEVEITGLTEKASSARSQANSVQSQLEIIQEQAR------------------------------NQNSMYMRQLSD 320
Cdd:COG3096 558 LLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKelaarapawlaaqdalerlreqsgealadsQEVTAAMQQLLE 637
|
330 340
....*....|....*....|....*.
gi 1958677953 321 LESTVSQLRSELRETKRMYEDKIEEL 346
Cdd:COG3096 638 REREATVERDELAARKQALESQIERL 663
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
307-574 |
3.84e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 41.21 E-value: 3.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 307 ARNQNSMYMRQLSDLESTVSQ--LRSE--LRETKRMyEDKIEELEKQ----------LVLANSELTEARTERDQFSQESG 372
Cdd:pfam05622 181 LRGQLETYKRQVQELHGKLSEesKKADklEFEYKKL-EEKLEALQKEkerliierdtLRETNEELRCAQLQQAELSQADA 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 373 NLD------DQLQKLLADLHKREKELSLEKEqNKRLWDRDTGNSIT-IDHLRRELDDRNMEVQRLEALLKAMKN---ECQ 442
Cdd:pfam05622 260 LLSpssdpgDNLAAEIMPAEIREKLIRLQHE-NKMLRLGQEGSYRErLTELQQLLEDANRRKNELETQNRLANQrilELQ 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 443 GQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLE--------SSERTVSDLTASLQEKERAIEAT 514
Cdd:pfam05622 339 QQVEELQKALQEQGSKAEDSSLLKQKLEEHLEKLHEAQSELQKKKEQIEelepkqdsNLAQKIDELQEALRKKDEDMKAM 418
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 515 NAEITKLRSRVDLKLQELQHLKNEGdhlrnVQTECEALRLQMAEKDKVIEILRQQIENMT 574
Cdd:pfam05622 419 EERYKKYVEKAKSVIKTLDPKQNPA-----SPPEIQALKNQLLEKDKKIEHLERDFEKSK 473
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
446-716 |
4.30e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 446 ERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRV 525
Cdd:COG4372 31 EQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 526 DLKLQELQHLKNEGDHLR----NVQTECEALRLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDR 601
Cdd:COG4372 111 EELQEELEELQKERQDLEqqrkQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLK 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 602 KLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQERDQllnEVKTSRTELNNLSEDYEVLKRN 681
Cdd:COG4372 191 EANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELE---EDKEELLEEVILKEIEELELAI 267
|
250 260 270
....*....|....*....|....*....|....*
gi 1958677953 682 FRNKSEEMESTTNRLKMQLKSAQSELEQTRNTLKT 716
Cdd:COG4372 268 LVEKDTEEEELEIAALELEALEEAALELKLLALLL 302
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
302-787 |
4.45e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.58 E-value: 4.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 302 IIQEQARNqNSMYMRQLSDLESTVSQLRselretkrmyeDKIEELEKQLVlaNSELTEARTERDQFSQE--------SGN 373
Cdd:TIGR01612 683 IVKENAID-NTEDKAKLDDLKSKIDKEY-----------DKIQNMETATV--ELHLSNIENKKNELLDIiveikkhiHGE 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 374 LDDQLQKLLADLHKREKELS------------LEKEQNKRLWDRDTGN-SITIDHLRRELDDRNMEVQR----------- 429
Cdd:TIGR01612 749 INKDLNKILEDFKNKEKELSnkindyakekdeLNKYKSKISEIKNHYNdQINIDNIKDEDAKQNYDKSKeyiktisiked 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 430 -LEALLKAMKNECQGQMERQMAAIQGKNESLEKVSSltaQLESTKEMLRKVVEELTAKKMNLesSERTVSDLTASLQEKE 508
Cdd:TIGR01612 829 eIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDS---EHEQFAELTNKIKAEISDDKLND--YEKKFNDSKSLINEIN 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 509 RAIEATNAEITKLRsRVDLKLQELQHLKNEGDHLRNVQTecealrlqmaekdKVIEILRQQIENMTQlvgqhgrTAGAMQ 588
Cdd:TIGR01612 904 KSIEEEYQNINTLK-KVDEYIKICENTKESIEKFHNKQN-------------ILKEILNKNIDTIKE-------SNLIEK 962
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 589 VEKAQLEKEINDRKLELQefKILKDKK----DAKIRELEARVSDLE--LEKVK---LVNAGSERLRAVKDIRQERDQLLN 659
Cdd:TIGR01612 963 SYKDKFDNTLIDKINELD--KAFKDASlndyEAKNNELIKYFNDLKanLGKNKenmLYHQFDEKEKATNDIEQKIEDANK 1040
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 660 EVKTSR----TELNNLSED--------YEVLKRNFRNKSEEMESTTNRLKMQLK-------------SAQSELEQTRNTL 714
Cdd:TIGR01612 1041 NIPNIEiaihTSIYNIIDEiekeigknIELLNKEILEEAEINITNFNEIKEKLKhynfddfgkeeniKYADEINKIKDDI 1120
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 715 KTMEGSDGHAMKVAMGMQKQ----ITAKRGQIDALQSKV-------------QFLEEAVTSANKEKhFLKEEKSKLSQEL 777
Cdd:TIGR01612 1121 KNLDQKIDHHIKALEEIKKKsenyIDEIKAQINDLEDVAdkaisnddpeeieKKIENIVTKIDKKK-NIYDEIKKLLNEI 1199
|
570
....*....|
gi 1958677953 778 STVATEKNKM 787
Cdd:TIGR01612 1200 AEIEKDKTSL 1209
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
343-440 |
4.73e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 4.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 343 IEELEKQLVLANSELTEARTERDQFSQESgnlddqlqklLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDD 422
Cdd:COG0542 413 LDELERRLEQLEIEKEALKKEQDEASFER----------LAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQ 482
|
90
....*....|....*...
gi 1958677953 423 RNMEVQRLEALLKAMKNE 440
Cdd:COG0542 483 RYGKIPELEKELAELEEE 500
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
223-836 |
4.96e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 4.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 223 KILRELDTEISFLKGRIFPVEDQLETLKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSVQSQLEI 302
Cdd:TIGR00618 260 QLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSS 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 303 IQEQARNQNSMYMRQ-LSDLESTVSQLRSELRETKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQK- 380
Cdd:TIGR00618 340 IEEQRRLLQTLHSQEiHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAf 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 381 --LLADLHKREKELSLEKEQNKRLwdrdtgnSITIDHLRRELDDRNMEVQRLEALLKAMKnecqgqmerqmaaiqgknES 458
Cdd:TIGR00618 420 rdLQGQLAHAKKQQELQQRYAELC-------AAAITCTAQCEKLEKIHLQESAQSLKERE------------------QQ 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 459 LEKVSSLTAQLESTKEMLRKVVEELTAKKMNLESS------ERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQ-E 531
Cdd:TIGR00618 475 LQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGScihpnpARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTsE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 532 LQHLKNEGDHLRNVQTECEALRLQMAEKDKVIEILRQQIENMTQLVGQHGR----TAGAMQVEKAQLEKEINDRKLELQE 607
Cdd:TIGR00618 555 RKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEaedmLACEQHALLRKLQPEQDLQDVRLHL 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 608 FKI---LKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAvkdIRQERDQLLNEVKTSRTELNNLSEDYEVLKRNFRN 684
Cdd:TIGR00618 635 QQCsqeLALKLTALHALQLTLTQERVREHALSIRVLPKELLA---SRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELET 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 685 KSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQ--------IDALQSKVQFLEEAV 756
Cdd:TIGR00618 712 HIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEevtaalqtGAELSHLAAEIQFFN 791
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 757 TSANKEKHFLKEEKSKLSQELSTVATEKN----KMAGELEVLRSQERRLKEKVANmevaLDKASLQFAECQDIIQRQEQE 832
Cdd:TIGR00618 792 RLREEDTHLLKTLEAEIGQEIPSDEDILNlqceTLVQEEEQFLSRLEEKSATLGE----ITHQLLKYEECSKQLAQLTQE 867
|
....
gi 1958677953 833 SVRL 836
Cdd:TIGR00618 868 QAKI 871
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
636-763 |
5.05e-03 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 40.60 E-value: 5.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 636 LVNAGSERLR--AVKDIRQERDQLLNEVKTSRTELnnlsedyevlkRNFRNK---------SEEMESTTNRLKMQLKSAQ 704
Cdd:COG3524 166 LVNQLSERARedAVRFAEEEVERAEERLRDAREAL-----------LAFRNRngildpeatAEALLQLIATLEGQLAELE 234
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958677953 705 SELEQTRNTLktmegSDGHAmkvamgmqkQITAKRGQIDALQSKVQFLEEAVTSANKEK 763
Cdd:COG3524 235 AELAALRSYL-----SPNSP---------QVRQLRRRIAALEKQIAAERARLTGASGGD 279
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
225-398 |
5.46e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 5.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 225 LRELDTEIsflkgrifpveDQLETLKSESQNKIELLlQQHQDRIEQLISEHEVEITGLTEKASSARSQANSVQSQLEIIQ 304
Cdd:COG1579 12 LQELDSEL-----------DRLEHRLKELPAELAEL-EDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 305 EQARNQNSMymRQLSDLESTVSQLRSELRETkrmyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 384
Cdd:COG1579 80 EQLGNVRNN--KEYEALQKEIESLKRRISDL----EDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAE 153
|
170
....*....|....
gi 1958677953 385 LHKREKELSLEKEQ 398
Cdd:COG1579 154 LEAELEELEAEREE 167
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
73-391 |
5.90e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 40.61 E-value: 5.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 73 EHIERVLEEYSQQVKDLQRRLNESNELHEKQkfylRQSVIDLQTKLQEMqmeRDAMADIRRRESQSQEELRNQLQNTVHE 152
Cdd:pfam06160 89 DEIEELLDDIEEDIKQILEELDELLESEEKN----REEVEELKDKYREL---RKTLLANRFSYGPAIDELEKQLAEIEEE 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 153 LEAAKSLKE--------DMLKDSSTQIEQLRKLMLSHEGVLQDIRSVLVD-FEE-ASGkkiceHDSMSTMHFRSLGSAIS 222
Cdd:pfam06160 162 FSQFEELTEsgdylearEVLEKLEEETDALEELMEDIPPLYEELKTELPDqLEElKEG-----YREMEEEGYALEHLNVD 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 223 KILRELDTEISFLkgrifpvEDQLETLKSEsqnKIELLLQQHQDRIEQL--ISEHEVEitgltekassARSQANSVQSQL 300
Cdd:pfam06160 237 KEIQQLEEQLEEN-------LALLENLELD---EAEEALEEIEERIDQLydLLEKEVD----------AKKYVEKNLPEI 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 301 EIIQEQARNQNSMYMRQLSDL----------ESTVSQLRSELRETKRMYEDKIEELEKQLVlANSELTEARTERDQFSQE 370
Cdd:pfam06160 297 EDYLEHAEEQNKELKEELERVqqsytlneneLERVRGLEKQLEELEKRYDEIVERLEEKEV-AYSELQEELEEILEQLEE 375
|
330 340
....*....|....*....|.
gi 1958677953 371 SGNLDDQLQKLLADLHKREKE 391
Cdd:pfam06160 376 IEEEQEEFKESLQSLRKDELE 396
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
494-719 |
6.82e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 6.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 494 ERTVSDLTASLQEKERAIEATNAEITKLRSRVDLkLQELqhlknegdhlRNVQTECEALRLQMAEKDKVIEILRQQienm 573
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQIEL-LEPI----------RELAERYAAARERLAELEYLRAALRLW---- 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 574 tqlvgQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERL-RAVKDIRQ 652
Cdd:COG4913 285 -----FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLeRELEERER 359
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958677953 653 ERDQLLNEVKT-------SRTELNNLSEDYEVLKRNFRNKSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEG 719
Cdd:COG4913 360 RRARLEALLAAlglplpaSAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
643-809 |
7.69e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 39.62 E-value: 7.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 643 RLRAVKDIRQERDQLLNEVKTSRTE-LNNLSEDYEVLKRNfrnkSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEGSD 721
Cdd:smart00787 127 RLEAKKMWYEWRMKLLEGLKEGLDEnLEGLKEDYKLLMKE----LELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 722 GHAMKVAM----GMQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELstvatEKNKMAGELEVlrsq 797
Cdd:smart00787 203 PTELDRAKeklkKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL-----EQCRGFTFKEI---- 273
|
170
....*....|..
gi 1958677953 798 eRRLKEKVANME 809
Cdd:smart00787 274 -EKLKEQLKLLQ 284
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
252-441 |
9.86e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 9.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 252 ESQNKIELLLQQHQDRIEQLISEHEVEIT-GLTEKASSARSQAN----SVQSQLEIIQEqARNQNSMYMRQLSDLESTVS 326
Cdd:PTZ00121 1754 EEKKKIAHLKKEEEKKAEEIRKEKEAVIEeELDEEDEKRRMEVDkkikDIFDNFANIIE-GGKEGNLVINDSKEMEDSAI 1832
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958677953 327 QlrsELRETKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL-ADLHKREKELSLEKEQNKRLWDR 405
Cdd:PTZ00121 1833 K---EVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEeADEIEKIDKDDIEREIPNNNMAG 1909
|
170 180 190
....*....|....*....|....*....|....*.
gi 1958677953 406 DTGNSITIDHLRRELDDRNMEVQRLEALLKAMKNEC 441
Cdd:PTZ00121 1910 KNNDIIDDKLDKDEYIKRDAEETREEIIKISKKDMC 1945
|
|
| |
