NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958704069|ref|XP_038951615|]
View 

transcription factor AP-2-alpha isoform X2 [Rattus norvegicus]

Protein Classification

AP-2 family transcription factor( domain architecture ID 10505561)

AP-2 family transcription factor is a sequence-specific DNA-binding protein that interacts with inducible viral and cellular enhancer elements to regulate transcription of selected genes

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TF_AP-2 pfam03299
Transcription factor AP-2;
213-407 5.59e-115

Transcription factor AP-2;


:

Pssm-ID: 460877  Cd Length: 196  Bit Score: 334.98  E-value: 5.59e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958704069 213 FCSVPGRLSLLSSTSKYKVTVAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRSLREKLDKIGLNLPAGRRKAANVTLLT 292
Cdd:pfam03299   1 FCEVPGRLSLLSSTSKYKVTVAEVRRRLSGPECLNASLLGGNLRRAKSKNGGEILREKLEKIGLKLPAGRRKAANVTLFT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958704069 293 SLVEGEAVHLARDFGYVCETEFPAKAVAEFLNRQH-SDPNEQVTRKNMLLATKQICKEFTDLLAQDRSPLGNSRPNPILE 371
Cdd:pfam03299  81 SLVEGEALHLAKDLGKLCETEFPAKQIAEELVREHlGDPNELEARKNMLEAFKQCMSELVDLLSSVRPPLTGRVPKPSKN 160

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1958704069 372 PGIQSCLTHFNLISHGFGSPAVCAAVTALQNYLTEA 407
Cdd:pfam03299 161 NSLNHSMEHFSLATHGFGIPAQRAWLRALQKIGEEM 196
 
Name Accession Description Interval E-value
TF_AP-2 pfam03299
Transcription factor AP-2;
213-407 5.59e-115

Transcription factor AP-2;


Pssm-ID: 460877  Cd Length: 196  Bit Score: 334.98  E-value: 5.59e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958704069 213 FCSVPGRLSLLSSTSKYKVTVAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRSLREKLDKIGLNLPAGRRKAANVTLLT 292
Cdd:pfam03299   1 FCEVPGRLSLLSSTSKYKVTVAEVRRRLSGPECLNASLLGGNLRRAKSKNGGEILREKLEKIGLKLPAGRRKAANVTLFT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958704069 293 SLVEGEAVHLARDFGYVCETEFPAKAVAEFLNRQH-SDPNEQVTRKNMLLATKQICKEFTDLLAQDRSPLGNSRPNPILE 371
Cdd:pfam03299  81 SLVEGEALHLAKDLGKLCETEFPAKQIAEELVREHlGDPNELEARKNMLEAFKQCMSELVDLLSSVRPPLTGRVPKPSKN 160

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1958704069 372 PGIQSCLTHFNLISHGFGSPAVCAAVTALQNYLTEA 407
Cdd:pfam03299 161 NSLNHSMEHFSLATHGFGIPAQRAWLRALQKIGEEM 196
 
Name Accession Description Interval E-value
TF_AP-2 pfam03299
Transcription factor AP-2;
213-407 5.59e-115

Transcription factor AP-2;


Pssm-ID: 460877  Cd Length: 196  Bit Score: 334.98  E-value: 5.59e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958704069 213 FCSVPGRLSLLSSTSKYKVTVAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRSLREKLDKIGLNLPAGRRKAANVTLLT 292
Cdd:pfam03299   1 FCEVPGRLSLLSSTSKYKVTVAEVRRRLSGPECLNASLLGGNLRRAKSKNGGEILREKLEKIGLKLPAGRRKAANVTLFT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958704069 293 SLVEGEAVHLARDFGYVCETEFPAKAVAEFLNRQH-SDPNEQVTRKNMLLATKQICKEFTDLLAQDRSPLGNSRPNPILE 371
Cdd:pfam03299  81 SLVEGEALHLAKDLGKLCETEFPAKQIAEELVREHlGDPNELEARKNMLEAFKQCMSELVDLLSSVRPPLTGRVPKPSKN 160

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1958704069 372 PGIQSCLTHFNLISHGFGSPAVCAAVTALQNYLTEA 407
Cdd:pfam03299 161 NSLNHSMEHFSLATHGFGIPAQRAWLRALQKIGEEM 196
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH