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Conserved domains on  [gi|1958719860|ref|XP_038951927|]
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protein FAM193B isoform X4 [Rattus norvegicus]

Protein Classification

PTZ00449 and FAM193_C domain-containing protein( domain architecture ID 11239807)

PTZ00449 and FAM193_C domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FAM193_C pfam15914
FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 ...
 722-774 1.07e-25

FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. This C-terminal region of these proteins carries the most conserved residues.


:

Pssm-ID: 464940  Cd Length: 57  Bit Score: 100.38  E-value: 1.07e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958719860 722 DVFLPK--DLDGVEMDETDREVEYFKRFCLDSAKQTR-QKVAVNWTNFSLKKTAPS 774
Cdd:pfam15914   1 DVFLPKdiDLDDVEMDDTEREVEYFKRFCLDSAPQTRkQKVHVNWKDFSLKKKTTA 56
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 500-662 3.89e-04

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 3.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860  500 PQSHTLQAPSEPVPPWAERRDPHPPwtevrGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSSEESPKE--VPICK 577
Cdd:PHA03247  2680 PQRPRRRAARPTVGSLTSLADPPPP-----PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGpaTPGGP 2754

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860  578 QERSEPVATGGKPRKSKrqgSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPI 657
Cdd:PHA03247  2755 ARPARPPTTAGPPAPAP---PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831


                   ....*
gi 1958719860  658 QAASP 662
Cdd:PHA03247  2832 TSAQP 2836
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 128-192 3.14e-03

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 3.14e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958719860  128 SDLTAPPNSPTGPAPHPASLIPSHPGSFSSASHPHLLPTTPAAPFPAQASECPMAAATATHPPGP 192
Cdd:PHA03247  2696 TSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP 2760
 
Name Accession Description Interval E-value
FAM193_C pfam15914
FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 ...
 722-774 1.07e-25

FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. This C-terminal region of these proteins carries the most conserved residues.


Pssm-ID: 464940  Cd Length: 57  Bit Score: 100.38  E-value: 1.07e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958719860 722 DVFLPK--DLDGVEMDETDREVEYFKRFCLDSAKQTR-QKVAVNWTNFSLKKTAPS 774
Cdd:pfam15914   1 DVFLPKdiDLDDVEMDDTEREVEYFKRFCLDSAPQTRkQKVHVNWKDFSLKKKTTA 56
PHA03247 PHA03247
large tegument protein UL36; Provisional
 500-662 3.89e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 3.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860  500 PQSHTLQAPSEPVPPWAERRDPHPPwtevrGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSSEESPKE--VPICK 577
Cdd:PHA03247  2680 PQRPRRRAARPTVGSLTSLADPPPP-----PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGpaTPGGP 2754

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860  578 QERSEPVATGGKPRKSKrqgSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPI 657
Cdd:PHA03247  2755 ARPARPPTTAGPPAPAP---PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831


                   ....*
gi 1958719860  658 QAASP 662
Cdd:PHA03247  2832 TSAQP 2836
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 449-664 2.20e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 41.48  E-value: 2.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860 449 ASLNMCELGMDSSGFKEGTMEAQTLTPSDLSGSSQKQPDINLDLSPLTLGSPQSHTLqAPSEPVPPWAERRDPHPPW-TE 527
Cdd:pfam17823 224 AGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRL-SPAKHMPSDTMARNPAAPMgAQ 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860 528 VRGPPPAIPENGLVrrLNTVPNlsrviwvktPKPgKPSSEESPKEVPICKQERSEPVATGGKprkskrqgSQAKKTEASP 607
Cdd:pfam17823 303 AQGPIIQVSTDQPV--HNTAGE---------PTP-SPSNTTLEPNTPKSVASTNLAVVTTTK--------AQAKEPSASP 362

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958719860 608 APWPPANQ----EAPSAKSQMSS--PKQPGKGP----EPAKAGSAAEPGEGSRGsrPGPIQAASPKT 664
Cdd:pfam17823 363 VPVLHTSMipevEATSPTTQPSPllPTQGAAGPgillAPEQVATEATAGTASAG--PTPRSSGDPKT 427
PHA03247 PHA03247
large tegument protein UL36; Provisional
 128-192 3.14e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 3.14e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958719860  128 SDLTAPPNSPTGPAPHPASLIPSHPGSFSSASHPHLLPTTPAAPFPAQASECPMAAATATHPPGP 192
Cdd:PHA03247  2696 TSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP 2760
 
Name Accession Description Interval E-value
FAM193_C pfam15914
FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 ...
 722-774 1.07e-25

FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. This C-terminal region of these proteins carries the most conserved residues.


Pssm-ID: 464940  Cd Length: 57  Bit Score: 100.38  E-value: 1.07e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958719860 722 DVFLPK--DLDGVEMDETDREVEYFKRFCLDSAKQTR-QKVAVNWTNFSLKKTAPS 774
Cdd:pfam15914   1 DVFLPKdiDLDDVEMDDTEREVEYFKRFCLDSAPQTRkQKVHVNWKDFSLKKKTTA 56
PHA03247 PHA03247
large tegument protein UL36; Provisional
 500-662 3.89e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 3.89e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860  500 PQSHTLQAPSEPVPPWAERRDPHPPwtevrGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSSEESPKE--VPICK 577
Cdd:PHA03247  2680 PQRPRRRAARPTVGSLTSLADPPPP-----PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGpaTPGGP 2754

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860  578 QERSEPVATGGKPRKSKrqgSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPI 657
Cdd:PHA03247  2755 ARPARPPTTAGPPAPAP---PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831


                   ....*
gi 1958719860  658 QAASP 662
Cdd:PHA03247  2832 TSAQP 2836
PHA03247 PHA03247
large tegument protein UL36; Provisional
 474-700 1.04e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 1.04e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860  474 TPSDLSGSSQKQPdinldlsPLTLGSPQSHTLQAP-SEPVPPWAERRDPHPPWTEVRGPPPAIPENGLVRRLNTVPNLSR 552
Cdd:PHA03247  2600 APVDDRGDPRGPA-------PPSPLPPDTHAPDPPpPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR 2672

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860  553 VIWVKTPkPGKPSSEESPKEV--------PICKQERSEPVATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQM 624
Cdd:PHA03247  2673 AAQASSP-PQRPRRRAARPTVgsltsladPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATP 2751

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958719860  625 SSPKQPGKGPEPAKAGSAAEPGEGSRGSRPG-PIQAASPKTDKKGSSWQNWPGGARARTLEQESEQIPGPAKPQSLS 700
Cdd:PHA03247  2752 GGPARPARPPTTAGPPAPAPPAAPAAGPPRRlTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL 2828
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 557-740 1.09e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 1.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860 557 KTPKPGKPSSEESPKEVPICKQERSEPVATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEp 636
Cdd:PRK07764  628 APAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA- 706

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860 637 akAGSAAEPGEGSRGSRPGPIQAASPKTdkkgsswqnwPGGARARTLEQESEQIPGPAKPQSLSQGKGR-SRRSRNKQEK 715
Cdd:PRK07764  707 --ATPPAGQADDPAAQPPQAAQGASAPS----------PAADDPVPLPPEPDDPPDPAGAPAQPPPPPApAPAAAPAAAP 774

                         170       180
                  ....*....|....*....|....*
gi 1958719860 716 SASSLDDVFLPKDLDGVEMDETDRE 740
Cdd:PRK07764  775 PPSPPSEEEEMAEDDAPSMDDEDRR 799
PHA03378 PHA03378
EBNA-3B; Provisional
 490-702 1.66e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 41.98  E-value: 1.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860 490 LDLSPLTLGSPQSHTLQAPSEPVPPWAE---RRDPHPPWTEVRGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSS 566
Cdd:PHA03378  572 LQIQPLTSPTTSQLASSAPSYAQTPWPVphpSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTP 651

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860 567 EESPKEVPICKQersepvATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQ--PGKGPEPAKAGSAAE 644
Cdd:PHA03378  652 HQPPQVEITPYK------PTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAapPGRAQRPAAATGRAR 725

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1958719860 645 PGEGSRGSRPGPIQAASPKTDKKGSSWQNWPGGArARTLEQESEQIPGPAKPQSLSQG 702
Cdd:PHA03378  726 PPAAAPGRARPPAAAPGRARPPAAAPGRARPPAA-APGRARPPAAAPGAPTPQPPPQA 782
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 449-664 2.20e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 41.48  E-value: 2.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860 449 ASLNMCELGMDSSGFKEGTMEAQTLTPSDLSGSSQKQPDINLDLSPLTLGSPQSHTLqAPSEPVPPWAERRDPHPPW-TE 527
Cdd:pfam17823 224 AGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRL-SPAKHMPSDTMARNPAAPMgAQ 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860 528 VRGPPPAIPENGLVrrLNTVPNlsrviwvktPKPgKPSSEESPKEVPICKQERSEPVATGGKprkskrqgSQAKKTEASP 607
Cdd:pfam17823 303 AQGPIIQVSTDQPV--HNTAGE---------PTP-SPSNTTLEPNTPKSVASTNLAVVTTTK--------AQAKEPSASP 362

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958719860 608 APWPPANQ----EAPSAKSQMSS--PKQPGKGP----EPAKAGSAAEPGEGSRGsrPGPIQAASPKT 664
Cdd:pfam17823 363 VPVLHTSMipevEATSPTTQPSPllPTQGAAGPgillAPEQVATEATAGTASAG--PTPRSSGDPKT 427
PHA03247 PHA03247
large tegument protein UL36; Provisional
 128-192 3.14e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 3.14e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958719860  128 SDLTAPPNSPTGPAPHPASLIPSHPGSFSSASHPHLLPTTPAAPFPAQASECPMAAATATHPPGP 192
Cdd:PHA03247  2696 TSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP 2760
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 585-730 4.07e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 4.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860 585 ATGGKPRKSKRQGSQAKKTEASPAPW---PPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSRGS-RPGPIQAA 660
Cdd:PRK07764  597 GEGPPAPASSGPPEEAARPAAPAAPAapaAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDgWPAKAGGA 676

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860 661 SPKTDKKGSSWQNWPGGARARTLEQESEQIPGPAKPQSLSQGKGRSRRSRNKQEKSASSLDDVFLPKDLD 730
Cdd:PRK07764  677 APAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPD 746
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 557-741 4.30e-03

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 40.62  E-value: 4.30e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860  557 KTPKPGKP-------SSEESPKEVPICKQERSEPVATGGKPRKskRQGSQ----AKKTEASPAPWPPANQEAPSAKSQMS 625
Cdd:PLN03237  1200 QAPKKPAPkkttkkaSESETTEETYGSSAMETENVAEVVKPKG--RAGAKkkapAAAKEKEEEDEILDLKDRLAAYNLDS 1277

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860  626 SPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPIQAASPKTDKKGSswqnwPGGARARTLEQESEQIPGPAKPQSLSQGKGR 705
Cdd:PLN03237  1278 APAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFA-----VEVSLAERLKKKGGRKPAAANKKAAKPPAAA 1352

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1958719860  706 SRRSRNKQEKSASSLDDVFLPKDLDGVEMDETDREV 741
Cdd:PLN03237  1353 KKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKM 1388
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 493-710 6.15e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.15  E-value: 6.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860  493 SPLTLGSPQSHTLQAPSEPVPPWAER-------RDPHPPW-TEVRGPPPAIPENGLVRRLNTVPNLSrviwvKTPKPGKP 564
Cdd:PHA03307   174 LPLSSPEETARAPSSPPAEPPPSTPPaaasprpPRRSSPIsASASSPAPAPGRSAADDAGASSSDSS-----SSESSGCG 248

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860  565 SSEESPKEVP-----ICKQERSEPVATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKA 639
Cdd:PHA03307   249 WGPENECPLPrpapiTLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSS 328

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958719860  640 GSAAEPGEGSRGSRPGPIQAASPkTDKKGSSWQNWPGGARARtleqeseqiPGPAKPQSLSQGKGRSRRSR 710
Cdd:PHA03307   329 TSSSSESSRGAAVSPGPSPSRSP-SPSRPPPPADPSSPRKRP---------RPSRAPSSPAASAGRPTRRR 389
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 578-698 8.18e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 8.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860 578 QERSEPVATGGKPrkSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAgSAAEPGEGSRGSRPGPI 657
Cdd:PRK07764  381 LERRLGVAGGAGA--PAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPA-PPSPAGNAPAGGAPSPP 457

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1958719860 658 QAASPKtdkkgSSWQNWPGGARARTLEQESEQIPGPAKPQS 698
Cdd:PRK07764  458 PAAAPS-----AQPAPAPAAAPEPTAAPAPAPPAAPAPAAA 493
PHA03247 PHA03247
large tegument protein UL36; Provisional
 493-694 8.38e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 8.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860  493 SPLTLGSPQSHTLQAPSEPVPPWAERRDPHPPWTEVRGPPPAIPENGL-----VRRLNTvpnlSRVIWVKTPKPGKPSSE 567
Cdd:PHA03247  2809 AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVapggdVRRRPP----SRSPAAKPAAPARPPVR 2884

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860  568 ESPKEvPICKQERSEPVATGGKPRKSKRQgSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGE 647
Cdd:PHA03247  2885 RLARP-AVSRSTESFALPPDQPERPPQPQ-APPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958719860  648 ------------------GSRGSRPGPIQAASPKTDKKGSSWQNWpggarARTLEQESEQIPGPA 694
Cdd:PHA03247  2963 wlgalvpgrvavprfrvpQPAPSREAPASSTPPLTGHSLSRVSSW-----ASSLALHEETDPPPV 3022
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 597-707 8.54e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 8.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958719860 597 GSQAKKTEASPAPWPPANQEAPSAksqmssPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPIQAASPKTDK--KGSSWQNW 674
Cdd:PRK07764  594 AAGGEGPPAPASSGPPEEAARPAA------PAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVavPDASDGGD 667

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1958719860 675 PGGARARTLEQESEQIPGPAKPQSLSQGKGRSR 707
Cdd:PRK07764  668 GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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