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Conserved domains on  [gi|1958720863|ref|XP_038951930|]
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protein FAM193B isoform X7 [Rattus norvegicus]

Protein Classification

PTZ00449 and FAM193_C domain-containing protein( domain architecture ID 11239807)

PTZ00449 and FAM193_C domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FAM193_C pfam15914
FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 ...
 527-579 2.06e-24

FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. This C-terminal region of these proteins carries the most conserved residues.


:

Pssm-ID: 464940  Cd Length: 57  Bit Score: 96.14  E-value: 2.06e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958720863 527 DVFLPK--DLDGVEMDETDREVEYFKRFCLDSAKQTR-QKVAVNWTNFSLKKTAPS 579
Cdd:pfam15914   1 DVFLPKdiDLDDVEMDDTEREVEYFKRFCLDSAPQTRkQKVHVNWKDFSLKKKTTA 56
DUF5585 super family cl39316
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 254-469 2.44e-05

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


The actual alignment was detected with superfamily member pfam17823:

Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 47.26  E-value: 2.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 254 ASLNMCELGMDSSGFKEGTMEAQTLTPSDLSGSSQKQPDINLDLSPLTLGSPQSHTLqAPSEPVPPWAERRDPHPPW-TE 332
Cdd:pfam17823 224 AGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRL-SPAKHMPSDTMARNPAAPMgAQ 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 333 VRGPPPAIPENGLVrrLNTVPNlsrviwvktPKPgKPSSEESPKEVPICKQERSEPVATGGKprkskrqgSQAKKTEASP 412
Cdd:pfam17823 303 AQGPIIQVSTDQPV--HNTAGE---------PTP-SPSNTTLEPNTPKSVASTNLAVVTTTK--------AQAKEPSASP 362

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958720863 413 APWPPANQ----EAPSAKSQMSS--PKQPGKGP----EPAKAGSAAEPGEGSRGsrPGPIQAASPKT 469
Cdd:pfam17823 363 VPVLHTSMipevEATSPTTQPSPllPTQGAAGPgillAPEQVATEATAGTASAG--PTPRSSGDPKT 427
 
Name Accession Description Interval E-value
FAM193_C pfam15914
FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 ...
 527-579 2.06e-24

FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. This C-terminal region of these proteins carries the most conserved residues.


Pssm-ID: 464940  Cd Length: 57  Bit Score: 96.14  E-value: 2.06e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958720863 527 DVFLPK--DLDGVEMDETDREVEYFKRFCLDSAKQTR-QKVAVNWTNFSLKKTAPS 579
Cdd:pfam15914   1 DVFLPKdiDLDDVEMDDTEREVEYFKRFCLDSAPQTRkQKVHVNWKDFSLKKKTTA 56
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 254-469 2.44e-05

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 47.26  E-value: 2.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 254 ASLNMCELGMDSSGFKEGTMEAQTLTPSDLSGSSQKQPDINLDLSPLTLGSPQSHTLqAPSEPVPPWAERRDPHPPW-TE 332
Cdd:pfam17823 224 AGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRL-SPAKHMPSDTMARNPAAPMgAQ 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 333 VRGPPPAIPENGLVrrLNTVPNlsrviwvktPKPgKPSSEESPKEVPICKQERSEPVATGGKprkskrqgSQAKKTEASP 412
Cdd:pfam17823 303 AQGPIIQVSTDQPV--HNTAGE---------PTP-SPSNTTLEPNTPKSVASTNLAVVTTTK--------AQAKEPSASP 362

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958720863 413 APWPPANQ----EAPSAKSQMSS--PKQPGKGP----EPAKAGSAAEPGEGSRGsrPGPIQAASPKT 469
Cdd:pfam17823 363 VPVLHTSMipevEATSPTTQPSPllPTQGAAGPgillAPEQVATEATAGTASAG--PTPRSSGDPKT 427
PHA03247 PHA03247
large tegument protein UL36; Provisional
 305-467 1.64e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.93  E-value: 1.64e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863  305 PQSHTLQAPSEPVPPWAERRDPHPPwtevrGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSSEESPKE--VPICK 382
Cdd:PHA03247  2680 PQRPRRRAARPTVGSLTSLADPPPP-----PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGpaTPGGP 2754

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863  383 QERSEPVATGGKPRKSKrqgSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPI 462
Cdd:PHA03247  2755 ARPARPPTTAGPPAPAP---PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831


                   ....*
gi 1958720863  463 QAASP 467
Cdd:PHA03247  2832 TSAQP 2836
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 216-525 9.74e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 38.98  E-value: 9.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 216 RPARERLLEWPDQELDRVSSFLSSRLQEIKSTVKDSLCASLNMCELGMDSSGFKEGTMEAqtlTPSDLSGSSQKQPDINL 295
Cdd:NF033839  223 QKEKHRQIVALIKELDELKKQALSEIDNVNTKVEIENTVHKIFADMDAVVTKFKKGLTQD---TPKEPGNKKPSAPKPGM 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 296 DLSPLTLGSPQSHTLQAPSEPVPPWAERRDPHPPwTEVRGPPPAIPenglvrrlntvPNLSRVIWVKTPKPGKPSSEESP 375
Cdd:NF033839  300 QPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVK-PQPEKPKPEVK-----------PQLETPKPEVKPQPEKPKPEVKP 367

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 376 KEVPICKQERSEPvatgGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSR 455
Cdd:NF033839  368 QPEKPKPEVKPQP----ETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVK 443

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 456 GSRPGPIQAASPKTDKKGSSWQNWPGGARARTLEQESEQIPGPAKPQslSQGKGRSRRSRNKQEKSASSL 525
Cdd:NF033839  444 PQPEKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQ--ADDKKPSTPNNLSKDKQPSNQ 511
 
Name Accession Description Interval E-value
FAM193_C pfam15914
FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 ...
 527-579 2.06e-24

FAM193 family C-terminal; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. This C-terminal region of these proteins carries the most conserved residues.


Pssm-ID: 464940  Cd Length: 57  Bit Score: 96.14  E-value: 2.06e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1958720863 527 DVFLPK--DLDGVEMDETDREVEYFKRFCLDSAKQTR-QKVAVNWTNFSLKKTAPS 579
Cdd:pfam15914   1 DVFLPKdiDLDDVEMDDTEREVEYFKRFCLDSAPQTRkQKVHVNWKDFSLKKKTTA 56
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 254-469 2.44e-05

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 47.26  E-value: 2.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 254 ASLNMCELGMDSSGFKEGTMEAQTLTPSDLSGSSQKQPDINLDLSPLTLGSPQSHTLqAPSEPVPPWAERRDPHPPW-TE 332
Cdd:pfam17823 224 AGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRL-SPAKHMPSDTMARNPAAPMgAQ 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 333 VRGPPPAIPENGLVrrLNTVPNlsrviwvktPKPgKPSSEESPKEVPICKQERSEPVATGGKprkskrqgSQAKKTEASP 412
Cdd:pfam17823 303 AQGPIIQVSTDQPV--HNTAGE---------PTP-SPSNTTLEPNTPKSVASTNLAVVTTTK--------AQAKEPSASP 362

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958720863 413 APWPPANQ----EAPSAKSQMSS--PKQPGKGP----EPAKAGSAAEPGEGSRGsrPGPIQAASPKT 469
Cdd:pfam17823 363 VPVLHTSMipevEATSPTTQPSPllPTQGAAGPgillAPEQVATEATAGTASAG--PTPRSSGDPKT 427
PHA03247 PHA03247
large tegument protein UL36; Provisional
 305-467 1.64e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.93  E-value: 1.64e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863  305 PQSHTLQAPSEPVPPWAERRDPHPPwtevrGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSSEESPKE--VPICK 382
Cdd:PHA03247  2680 PQRPRRRAARPTVGSLTSLADPPPP-----PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGpaTPGGP 2754

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863  383 QERSEPVATGGKPRKSKrqgSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPI 462
Cdd:PHA03247  2755 ARPARPPTTAGPPAPAP---PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831


                   ....*
gi 1958720863  463 QAASP 467
Cdd:PHA03247  2832 TSAQP 2836
PHA03378 PHA03378
EBNA-3B; Provisional
 295-507 3.94e-04

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 43.52  E-value: 3.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 295 LDLSPLTLGSPQSHTLQAPSEPVPPWAE---RRDPHPPWTEVRGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSS 371
Cdd:PHA03378  572 LQIQPLTSPTTSQLASSAPSYAQTPWPVphpSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTP 651

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 372 EESPKEVPICKQersepvATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQ--PGKGPEPAKAGSAAE 449
Cdd:PHA03378  652 HQPPQVEITPYK------PTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAapPGRAQRPAAATGRAR 725

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1958720863 450 PGEGSRGSRPGPIQAASPKTDKKGSSWQNWPGGArARTLEQESEQIPGPAKPQSLSQG 507
Cdd:PHA03378  726 PPAAAPGRARPPAAAPGRARPPAAAPGRARPPAA-APGRARPPAAAPGAPTPQPPPQA 782
PHA03247 PHA03247
large tegument protein UL36; Provisional
 279-505 4.00e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 4.00e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863  279 TPSDLSGSSQKQPdinldlsPLTLGSPQSHTLQAP-SEPVPPWAERRDPHPPWTEVRGPPPAIPENGLVRRLNTVPNLSR 357
Cdd:PHA03247  2600 APVDDRGDPRGPA-------PPSPLPPDTHAPDPPpPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR 2672

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863  358 VIWVKTPkPGKPSSEESPKEV--------PICKQERSEPVATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQM 429
Cdd:PHA03247  2673 AAQASSP-PQRPRRRAARPTVgsltsladPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATP 2751

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958720863  430 SSPKQPGKGPEPAKAGSAAEPGEGSRGSRPG-PIQAASPKTDKKGSSWQNWPGGARARTLEQESEQIPGPAKPQSLS 505
Cdd:PHA03247  2752 GGPARPARPPTTAGPPAPAPPAAPAAGPPRRlTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL 2828
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 303-545 4.92e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.05  E-value: 4.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 303 GSPQSHTLQAPSEPVPPWAERRDPHPPwtevRGPPPAIPENGlvrrlntvpnlsrviwvKTPKPGKPSSEESPKEVPICK 382
Cdd:PRK07764  590 PAPGAAGGEGPPAPASSGPPEEAARPA----APAAPAAPAAP-----------------APAGAAAAPAEASAAPAPGVA 648

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 383 QERSEPVATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEpakAGSAAEPGEGSRGSRPGPI 462
Cdd:PRK07764  649 APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA---ATPPAGQADDPAAQPPQAA 725

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 463 QAASPKTdkkgsswqnwPGGARARTLEQESEQIPGPAKPQSLSQGKGR-SRRSRNKQEKSASSLDDVFLPKDLDGVEMDE 541
Cdd:PRK07764  726 QGASAPS----------PAADDPVPLPPEPDDPPDPAGAPAQPPPPPApAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDD 795


                  ....
gi 1958720863 542 TDRE 545
Cdd:PRK07764  796 EDRR 799
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 298-515 8.04e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 8.04e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863  298 SPLTLGSPQSHTLQAPSEPVPPWAER----RDPHPPW----TEVRGPPPAIPENGLVRRLNTVPNLSrviwvKTPKPGKP 369
Cdd:PHA03307   174 LPLSSPEETARAPSSPPAEPPPSTPPaaasPRPPRRSspisASASSPAPAPGRSAADDAGASSSDSS-----SSESSGCG 248

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863  370 SSEESPKEVP-----ICKQERSEPVATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKA 444
Cdd:PHA03307   249 WGPENECPLPrpapiTLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSS 328

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958720863  445 GSAAEPGEGSRGSRPGPIQAASPkTDKKGSSwqnWPGGARARTleqeseQIPGPAKPQSLSQGKGRSRRSR 515
Cdd:PHA03307   329 TSSSSESSRGAAVSPGPSPSRSP-SPSRPPP---PADPSSPRK------RPRPSRAPSSPAASAGRPTRRR 389
PHA03247 PHA03247
large tegument protein UL36; Provisional
 298-499 3.21e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 3.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863  298 SPLTLGSPQSHTLQAPSEPVPPWAERRDPHPPWTEVRGPPPAIPENGL-----VRRLNTvpnlSRVIWVKTPKPGKPSSE 372
Cdd:PHA03247  2809 AAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVapggdVRRRPP----SRSPAAKPAAPARPPVR 2884

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863  373 ESPKEvPICKQERSEPVATGGKPRKSKRQgSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGE 452
Cdd:PHA03247  2885 RLARP-AVSRSTESFALPPDQPERPPQPQ-APPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958720863  453 ------------------GSRGSRPGPIQAASPKTDKKGSSWQNWpggarARTLEQESEQIPGPA 499
Cdd:PHA03247  2963 wlgalvpgrvavprfrvpQPAPSREAPASSTPPLTGHSLSRVSSW-----ASSLALHEETDPPPV 3022
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 383-503 3.78e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 3.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 383 QERSEPVATGGKPrkSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAgSAAEPGEGSRGSRPGPI 462
Cdd:PRK07764  381 LERRLGVAGGAGA--PAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPA-PPSPAGNAPAGGAPSPP 457

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1958720863 463 QAASPKtdkkgSSWQNWPGGARARTLEQESEQIPGPAKPQS 503
Cdd:PRK07764  458 PAAAPS-----AQPAPAPAAAPEPTAAPAPAPPAAPAPAAA 493
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 242-472 4.29e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 40.06  E-value: 4.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 242 QEIKSTVKDSLCASLNMCELGMDSSGFKEGTMEAQTLTPS---DLSGSSQKQPDINLDLSPLTLGSPQSHTLQAPSEPVP 318
Cdd:PTZ00449  483 QEIKKLIKKSKKKLAPIEEEDSDKHDEPPEGPEASGLPPKapgDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPG 562

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 319 PWAERRdphppwtevrgpPPAIPenglvrrlntvpnlsrviwVKTPKPGKPSSEESPKEVPickqersepvatggKPRKS 398
Cdd:PTZ00449  563 PAKEHK------------PSKIP-------------------TLSKKPEFPKDPKHPKDPE--------------EPKKP 597

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958720863 399 KRQGSQAKKTeASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPgEGSRGSR-PGPIQAASPKTDKK 472
Cdd:PTZ00449  598 KRPRSAQRPT-RPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERP-EGPKIIKsPKPPKSPKPPFDPK 670
PHA03247 PHA03247
large tegument protein UL36; Provisional
 299-467 5.54e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 5.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863  299 PLTLGSPQSHTLQAPSEPVP---PWAERRDPHPP--WTEVRG-----------PPPAIPENGLvrrlNTVPNLSRVIWVK 362
Cdd:PHA03247  2498 PGGGGPPDPDAPPAPSRLAPailPDEPVGEPVHPrmLTWIRGleelasddagdPPPPLPPAAP----PAAPDRSVPPPRP 2573

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863  363 TPKPGKPS--SEESPKEVPickQERSEPVATGGKPRKSKRQGSQAKKTEASPAPWPPAnqEAPSAKSQMSSPKQPGKGPE 440
Cdd:PHA03247  2574 APRPSEPAvtSRARRPDAP---PQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPP--PSPSPAANEPDPHPPPTVPP 2648

                          170       180       190
                   ....*....|....*....|....*....|.
gi 1958720863  441 PAKAGSAAEPGEGS---RGSRPG-PIQAASP 467
Cdd:PHA03247  2649 PERPRDDPAPGRVSrprRARRLGrAAQASSP 2679
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
309-465 6.95e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.45  E-value: 6.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 309 TLQAPSEPVPPWAERRDPHPPWTEVRGPPPAIPENGLVRRLNTVPNLSrviwVKTPKPGKPSSEESPKEVPICKQERSEP 388
Cdd:PRK07003  403 TGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVP----AKANARASADSRCDERDAQPPADSGSAS 478

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958720863 389 VATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGkgpEPAKAGSAAEPGEGSRGSRPGPIQAA 465
Cdd:PRK07003  479 APASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAA---PPAPEARPPTPAAAAPAARAGGAAAA 552
PLN03237 PLN03237
DNA topoisomerase 2; Provisional
 362-546 7.37e-03

DNA topoisomerase 2; Provisional


Pssm-ID: 215641 [Multi-domain]  Cd Length: 1465  Bit Score: 39.46  E-value: 7.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863  362 KTPKPGKP-------SSEESPKEVPICKQERSEPVATGGKPRKskRQGSQ----AKKTEASPAPWPPANQEAPSAKSQMS 430
Cdd:PLN03237  1200 QAPKKPAPkkttkkaSESETTEETYGSSAMETENVAEVVKPKG--RAGAKkkapAAAKEKEEEDEILDLKDRLAAYNLDS 1277

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863  431 SPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPIQAASPKTDKKGSswqnwPGGARARTLEQESEQIPGPAKPQSLSQGKGR 510
Cdd:PLN03237  1278 APAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFA-----VEVSLAERLKKKGGRKPAAANKKAAKPPAAA 1352

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1958720863  511 SRRSRNKQEKSASSLDDVFLPKDLDGVEMDETDREV 546
Cdd:PLN03237  1353 KKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKM 1388
dnaA PRK14086
chromosomal replication initiator protein DnaA;
312-501 9.58e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 39.04  E-value: 9.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 312 APSEPVPPWAERRDPHppwtevRGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSseespkevpicKQERSEPvat 391
Cdd:PRK14086   96 APPPPHARRTSEPELP------RPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPA-----------YQQRPEP--- 155

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 392 GGKPRKSKRQGSQAKKTEASP-APWPPANQEAPSA----------KSQMSSPKQPGKGPEPAKAGSAAE--------PGE 452
Cdd:PRK14086  156 GAWPRAADDYGWQQQRLGFPPrAPYASPASYAPEQerdrepydagRPEYDQRRRDYDHPRPDWDRPRRDrtdrpeppPGA 235

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958720863 453 GS--RGSRPGPIQAASPKTDKKGSswqnWPGGARARtleqeSEQIPGPAKP 501
Cdd:PRK14086  236 GHvhRGGPGPPERDDAPVVPIRPS----APGPLAAQ-----PAPAPGPGEP 277
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 216-525 9.74e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 38.98  E-value: 9.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 216 RPARERLLEWPDQELDRVSSFLSSRLQEIKSTVKDSLCASLNMCELGMDSSGFKEGTMEAqtlTPSDLSGSSQKQPDINL 295
Cdd:NF033839  223 QKEKHRQIVALIKELDELKKQALSEIDNVNTKVEIENTVHKIFADMDAVVTKFKKGLTQD---TPKEPGNKKPSAPKPGM 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 296 DLSPLTLGSPQSHTLQAPSEPVPPWAERRDPHPPwTEVRGPPPAIPenglvrrlntvPNLSRVIWVKTPKPGKPSSEESP 375
Cdd:NF033839  300 QPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVK-PQPEKPKPEVK-----------PQLETPKPEVKPQPEKPKPEVKP 367

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 376 KEVPICKQERSEPvatgGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQMSSPKQPGKGPEPAKAGSAAEPGEGSR 455
Cdd:NF033839  368 QPEKPKPEVKPQP----ETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVK 443

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958720863 456 GSRPGPIQAASPKTDKKGSSWQNWPGGARARTLEQESEQIPGPAKPQslSQGKGRSRRSRNKQEKSASSL 525
Cdd:NF033839  444 PQPEKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQ--ADDKKPSTPNNLSKDKQPSNQ 511
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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