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Conserved domains on  [gi|1958742941|ref|XP_038952714|]
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zinc finger protein 608 isoform X4 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SFP1 super family cl25788
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 511-592 2.53e-07

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


The actual alignment was detected with superfamily member COG5189:

Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 54.72  E-value: 2.53e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958742941  511 SSSEDSKPGKRVRTNSRSTPTTPQGKPETtfLDQGCSSPVLID-----CPHPNCNKKYKHINGLRYHQAHAHLDPENKLE 585
Cdd:COG5189    306 STGEMIDVRKLPCTNSSSNGKLAHGGERN--IDTPSRMLKVKDgkpykCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHEN 383


                   ....*..
gi 1958742941  586 FEPDSED 592
Cdd:COG5189    384 PSPEKMN 390
 
Name Accession Description Interval E-value
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 511-592 2.53e-07

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 54.72  E-value: 2.53e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958742941  511 SSSEDSKPGKRVRTNSRSTPTTPQGKPETtfLDQGCSSPVLID-----CPHPNCNKKYKHINGLRYHQAHAHLDPENKLE 585
Cdd:COG5189    306 STGEMIDVRKLPCTNSSSNGKLAHGGERN--IDTPSRMLKVKDgkpykCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHEN 383


                   ....*..
gi 1958742941  586 FEPDSED 592
Cdd:COG5189    384 PSPEKMN 390
 
Name Accession Description Interval E-value
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 511-592 2.53e-07

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 54.72  E-value: 2.53e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958742941  511 SSSEDSKPGKRVRTNSRSTPTTPQGKPETtfLDQGCSSPVLID-----CPHPNCNKKYKHINGLRYHQAHAHLDPENKLE 585
Cdd:COG5189    306 STGEMIDVRKLPCTNSSSNGKLAHGGERN--IDTPSRMLKVKDgkpykCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHEN 383


                   ....*..
gi 1958742941  586 FEPDSED 592
Cdd:COG5189    384 PSPEKMN 390
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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