|
Name |
Accession |
Description |
Interval |
E-value |
| Nucleic_acid_bd |
pfam13820 |
Putative nucleic acid-binding region; This is a family of putative nucleic acid-binding ... |
48-190 |
2.67e-60 |
|
Putative nucleic acid-binding region; This is a family of putative nucleic acid-binding proteins. Several members are annotated as being nuclear receptor coactivator 6 proteins but this could not be confirmed.
:
Pssm-ID: 463988 Cd Length: 143 Bit Score: 203.43 E-value: 2.67e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 48 IFVAFKGNIDDkdFKWKLDTILQSVPGLLHMESSKLKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQLRDLGILSV 127
Cdd:pfam13820 1 TFLAVKGNLRM--FQEKLDSIRENVAELLRTEKSKLKVRKVEPWNSVRVTFSIPREAALRLRLLAQHNDPRLRDLGILSV 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958759469 128 QIEGEGAINLALG---QNRSQDVRMnGPVVSGNSVRMEAGFPMASGPGLIRMTSPATVMMPQGGNA 190
Cdd:pfam13820 79 QIEGEGPINLTLAtmvQNPADDIIL-GCSTQLNSQRAEQGWTMLSALGLISDALPLHLRLAESGEY 143
|
|
| Med15 super family |
cl26621 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
377-788 |
7.95e-12 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
The actual alignment was detected with superfamily member pfam09606:
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 70.81 E-value: 7.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 377 QQASQAHTNFPQMSNPGQFTAPQMKSLQGGPS---RVPTPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMGPRP 453
Cdd:pfam09606 60 QQQPQGGQGNGGMGGGQQGMPDPINALQNLAGqgtRPQMMGPMGPGPGGPMGQQMGGPGTASNLLASLGRPQMPMGGAGF 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 454 PQNNPLSQGFQQPVSSPGRNP--MVQQGNVPPNFMVMQQQPPSQGPPSLHPGLGAGQANPNFMQGQVPSTTAATPGNSGA 531
Cdd:pfam09606 140 PSQMSRVGRMQPGGQAGGMMQpsSGQPGSGTPNQMGPNGGPGQGQAGGMNGGQQGPMGGQMPPQMGVPGMPGPADAGAQM 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 532 LQLQANQSVQHAGGQGAGPPQNQMQvshGPPNMMQPSLMGIHGNINNQQAGSSGVPQVTLGSMQGQPQQGPPSQLMGMHQ 611
Cdd:pfam09606 220 GQQAQANGGMNPQQMGGAPNQVAMQ---QQQPQQQGQQSQLGMGINQMQQMPQGVGGGAGQGGPGQPMGPPGQQPGAMPN 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 612 QIVPSQGQMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPhnqmMGPQGQVL 691
Cdd:pfam09606 297 VMSIGDQNNYQQQQTRQQQQQQGGNHPAAHQQQMNQSVGQGGQVVALGGLNHLETWNPGNFGGLGANP----MQRGQPGM 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 692 LQQNPMIEQIMTNQMQGNKAQFNSQNQSNVMP------GPAQIMRGPTPNmQGNMVQFTGQMSGQMLPQQGPVSNSPSQV 765
Cdd:pfam09606 373 MSSPSPVPGQQVRQVTPNQFMRQSPQPSVPSPqgpgsqPPQSHPGGMIPS-PALIPSPSPQMSQQPAQQRTIGQDSPGGS 451
|
410 420
....*....|....*....|...
gi 1958759469 766 MGIQGQVLRPPGPSPHMAQQHTD 788
Cdd:pfam09606 452 LNTPGQSAVNSPLNPQEEQLYRE 474
|
|
| PHA03247 super family |
cl33720 |
large tegument protein UL36; Provisional |
166-474 |
1.26e-05 |
|
large tegument protein UL36; Provisional
The actual alignment was detected with superfamily member PHA03247:
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 50.71 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 166 PMASGPGLIRMTSPATVMMPQGGNASSSMMAPGPNPELQPRTPRPASQSDAMDPLLSGLHIQQQSHPSGSLPPAHHP--- 242
Cdd:PHA03247 2614 PSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPtvg 2693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 243 -----MQPVPVNRQMNPANFPQLQQQQQQQQQQQQQQQQQQQQQLQTRPLQQHQQQQPQGI----RPQFTAPTQVPVPPG 313
Cdd:PHA03247 2694 sltslADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGParpaRPPTTAGPPAPAPPA 2773
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 314 WNQLPSGALQPPPAQGSLGPMTTNQGWKKAPLPSPMqAQLQARPSLATVQTPSHPPPPYPFGSQQASQAHTNFPQMSNP- 392
Cdd:PHA03247 2774 APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPA-AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPl 2852
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 393 GQFTAPqmkslqGGPSRVPTPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMGP-RPPQNNPLSQGFQQPVSSPG 471
Cdd:PHA03247 2853 GGSVAP------GGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPeRPPQPQAPPPPQPQPQPPPP 2926
|
...
gi 1958759469 472 RNP 474
Cdd:PHA03247 2927 PQP 2929
|
|
| PHA03247 super family |
cl33720 |
large tegument protein UL36; Provisional |
1041-1261 |
6.79e-04 |
|
large tegument protein UL36; Provisional
The actual alignment was detected with superfamily member PHA03247:
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1041 PPRGPLNPDSQRVPMQQSgnVPVMVSLQGPASVPPSPDKQRMPMPVNTPLGSNSRKMVYQESPQNSSSP-LGEMPSLPEA 1119
Cdd:PHA03247 2744 VPAGPATPGGPARPARPP--TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAvLAPAAALPPA 2821
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1120 ---GGSEVPSVSGGPSNMPSHLVVSQNQLMMTG--------PKPGPSPLSATQGATPQQPPVNSLPSshghhfPNVAAPT 1188
Cdd:PHA03247 2822 aspAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGsvapggdvRRRPPSRSPAAKPAAPARPPVRRLAR------PAVSRST 2895
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958759469 1189 QTSRPKTPNRASPRPYYPQTPNNRPPSTEPSEISLSPERLnasiaglfPPQINIPLPPRPNLNRGFDQQGLNP 1261
Cdd:PHA03247 2896 ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPP--------PPRPQPPLAPTTDPAGAGEPSGAVP 2960
|
|
| PHA03247 super family |
cl33720 |
large tegument protein UL36; Provisional |
1659-1926 |
1.52e-03 |
|
large tegument protein UL36; Provisional
The actual alignment was detected with superfamily member PHA03247:
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.77 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1659 PSTIPATPLTTNSGLMPPSVAVVGPlhiPQNIKFSSAPVTPNVPSSSPAPniQTGRPLVLSSRATPVPLPSPPCTS---S 1735
Cdd:PHA03247 2735 LPAAPAPPAVPAGPATPGGPARPAR---PPTTAGPPAPAPPAAPAAGPPR--RLTRPAVASLSESRESLPSPWDPAdppA 2809
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1736 PVVAPNPSVQQVKELNPDEASPQTNTSAdQSTLPSSQPTTVVSPLLANSPGSSANRRSPVSSSKGKG------KVDKIGQ 1809
Cdd:PHA03247 2810 AVLAPAAALPPAASPAGPLPPPTSAQPT-APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPaaparpPVRRLAR 2888
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1810 ILLTKACKKVtgSLEKGEEQYGADGETEGPGLETTTPGLMGTEQCSTELDSKTPTPSAPTllKMTSSPMGPSSTSTGPIL 1889
Cdd:PHA03247 2889 PAVSRSTESF--ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT--TDPAGAGEPSGAVPQPWL 2964
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1958759469 1890 pgGALPTSVRSVVTTLVPSELIS---TAPTTKGNHGGITS 1926
Cdd:PHA03247 2965 --GALVPGRVAVPRFRVPQPAPSreaPASSTPPLTGHSLS 3002
|
|
| Herpes_BLLF1 super family |
cl37540 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1483-1802 |
2.57e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
The actual alignment was detected with superfamily member pfam05109:
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 42.98 E-value: 2.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1483 SGAPNVTIKPPGLTDLEVTPPAVSGEDLKK-------ASVIPTLQDPSSKEPSNSLNLPHSNEPCSTLAHPELSEVSSNI 1555
Cdd:pfam05109 446 TGLPSSTHVPTNLTAPASTGPTVSTADVTSptpagttSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTP 525
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1556 APSIP-PVMSRPVSSSSISTPLPPNQITVFVTSNPITTSSNTSAALPTHLQSALMSTVVT-MPNVGNKVMvseGQSAAQS 1633
Cdd:pfam05109 526 AVTTPtPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTpTPNATSPTV---GETSPQA 602
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1634 NARPQFITpvfiNSSSIIQVMKGSQPSTIPATPLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVT----PNVPSSSP--A 1707
Cdd:pfam05109 603 NTTNHTLG----GTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPSTSDNStshmPLLTSAHPtgG 678
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1708 PNIQTGRPLVLSSRATPVPLPSP-PCTSSPVVAPNPSVQQVK--ELNPDEASPQTNTSADQStlPSSQPTTVVSpllANS 1784
Cdd:pfam05109 679 ENITQVTPASTSTHHVSTSSPAPrPGTTSQASGPGNSSTSTKpgEVNVTKGTPPKNATSPQA--PSGQKTAVPT---VTS 753
|
330
....*....|....*...
gi 1958759469 1785 PGSSANRRSPVSSSKGKG 1802
Cdd:pfam05109 754 TGGKANSTTGGKHTTGHG 771
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Nucleic_acid_bd |
pfam13820 |
Putative nucleic acid-binding region; This is a family of putative nucleic acid-binding ... |
48-190 |
2.67e-60 |
|
Putative nucleic acid-binding region; This is a family of putative nucleic acid-binding proteins. Several members are annotated as being nuclear receptor coactivator 6 proteins but this could not be confirmed.
Pssm-ID: 463988 Cd Length: 143 Bit Score: 203.43 E-value: 2.67e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 48 IFVAFKGNIDDkdFKWKLDTILQSVPGLLHMESSKLKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQLRDLGILSV 127
Cdd:pfam13820 1 TFLAVKGNLRM--FQEKLDSIRENVAELLRTEKSKLKVRKVEPWNSVRVTFSIPREAALRLRLLAQHNDPRLRDLGILSV 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958759469 128 QIEGEGAINLALG---QNRSQDVRMnGPVVSGNSVRMEAGFPMASGPGLIRMTSPATVMMPQGGNA 190
Cdd:pfam13820 79 QIEGEGPINLTLAtmvQNPADDIIL-GCSTQLNSQRAEQGWTMLSALGLISDALPLHLRLAESGEY 143
|
|
| Med15 |
pfam09606 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
377-788 |
7.95e-12 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 70.81 E-value: 7.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 377 QQASQAHTNFPQMSNPGQFTAPQMKSLQGGPS---RVPTPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMGPRP 453
Cdd:pfam09606 60 QQQPQGGQGNGGMGGGQQGMPDPINALQNLAGqgtRPQMMGPMGPGPGGPMGQQMGGPGTASNLLASLGRPQMPMGGAGF 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 454 PQNNPLSQGFQQPVSSPGRNP--MVQQGNVPPNFMVMQQQPPSQGPPSLHPGLGAGQANPNFMQGQVPSTTAATPGNSGA 531
Cdd:pfam09606 140 PSQMSRVGRMQPGGQAGGMMQpsSGQPGSGTPNQMGPNGGPGQGQAGGMNGGQQGPMGGQMPPQMGVPGMPGPADAGAQM 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 532 LQLQANQSVQHAGGQGAGPPQNQMQvshGPPNMMQPSLMGIHGNINNQQAGSSGVPQVTLGSMQGQPQQGPPSQLMGMHQ 611
Cdd:pfam09606 220 GQQAQANGGMNPQQMGGAPNQVAMQ---QQQPQQQGQQSQLGMGINQMQQMPQGVGGGAGQGGPGQPMGPPGQQPGAMPN 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 612 QIVPSQGQMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPhnqmMGPQGQVL 691
Cdd:pfam09606 297 VMSIGDQNNYQQQQTRQQQQQQGGNHPAAHQQQMNQSVGQGGQVVALGGLNHLETWNPGNFGGLGANP----MQRGQPGM 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 692 LQQNPMIEQIMTNQMQGNKAQFNSQNQSNVMP------GPAQIMRGPTPNmQGNMVQFTGQMSGQMLPQQGPVSNSPSQV 765
Cdd:pfam09606 373 MSSPSPVPGQQVRQVTPNQFMRQSPQPSVPSPqgpgsqPPQSHPGGMIPS-PALIPSPSPQMSQQPAQQRTIGQDSPGGS 451
|
410 420
....*....|....*....|...
gi 1958759469 766 MGIQGQVLRPPGPSPHMAQQHTD 788
Cdd:pfam09606 452 LNTPGQSAVNSPLNPQEEQLYRE 474
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
166-474 |
1.26e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 50.71 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 166 PMASGPGLIRMTSPATVMMPQGGNASSSMMAPGPNPELQPRTPRPASQSDAMDPLLSGLHIQQQSHPSGSLPPAHHP--- 242
Cdd:PHA03247 2614 PSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPtvg 2693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 243 -----MQPVPVNRQMNPANFPQLQQQQQQQQQQQQQQQQQQQQQLQTRPLQQHQQQQPQGI----RPQFTAPTQVPVPPG 313
Cdd:PHA03247 2694 sltslADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGParpaRPPTTAGPPAPAPPA 2773
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 314 WNQLPSGALQPPPAQGSLGPMTTNQGWKKAPLPSPMqAQLQARPSLATVQTPSHPPPPYPFGSQQASQAHTNFPQMSNP- 392
Cdd:PHA03247 2774 APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPA-AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPl 2852
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 393 GQFTAPqmkslqGGPSRVPTPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMGP-RPPQNNPLSQGFQQPVSSPG 471
Cdd:PHA03247 2853 GGSVAP------GGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPeRPPQPQAPPPPQPQPQPPPP 2926
|
...
gi 1958759469 472 RNP 474
Cdd:PHA03247 2927 PQP 2929
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
604-775 |
1.61e-05 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 49.81 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 604 SQLMGMHQQIVPsqgqMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMtPPKQMLPQQGPQMMAPhnqm 683
Cdd:TIGR01628 369 AHLQDQFMQLQP----RMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMP-TPMGPGGPLRPNGLAP---- 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 684 MGPQGQVLLQQNPMIEQimtNQMQGNKAQFNSQNQSNVMPGPAQimrGPTPNMQGNMVQFTGQMSgqmlpqqgpvSNSPS 763
Cdd:TIGR01628 440 MNAVRAPSRNAQNAAQK---PPMQPVMYPPNYQSLPLSQDLPQP---QSTASQGGQNKKLAQVLA----------SATPQ 503
|
170
....*....|..
gi 1958759469 764 QVMGIQGQVLRP 775
Cdd:TIGR01628 504 MQKQVLGERLFP 515
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1041-1261 |
6.79e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1041 PPRGPLNPDSQRVPMQQSgnVPVMVSLQGPASVPPSPDKQRMPMPVNTPLGSNSRKMVYQESPQNSSSP-LGEMPSLPEA 1119
Cdd:PHA03247 2744 VPAGPATPGGPARPARPP--TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAvLAPAAALPPA 2821
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1120 ---GGSEVPSVSGGPSNMPSHLVVSQNQLMMTG--------PKPGPSPLSATQGATPQQPPVNSLPSshghhfPNVAAPT 1188
Cdd:PHA03247 2822 aspAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGsvapggdvRRRPPSRSPAAKPAAPARPPVRRLAR------PAVSRST 2895
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958759469 1189 QTSRPKTPNRASPRPYYPQTPNNRPPSTEPSEISLSPERLnasiaglfPPQINIPLPPRPNLNRGFDQQGLNP 1261
Cdd:PHA03247 2896 ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPP--------PPRPQPPLAPTTDPAGAGEPSGAVP 2960
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1659-1926 |
1.52e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.77 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1659 PSTIPATPLTTNSGLMPPSVAVVGPlhiPQNIKFSSAPVTPNVPSSSPAPniQTGRPLVLSSRATPVPLPSPPCTS---S 1735
Cdd:PHA03247 2735 LPAAPAPPAVPAGPATPGGPARPAR---PPTTAGPPAPAPPAAPAAGPPR--RLTRPAVASLSESRESLPSPWDPAdppA 2809
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1736 PVVAPNPSVQQVKELNPDEASPQTNTSAdQSTLPSSQPTTVVSPLLANSPGSSANRRSPVSSSKGKG------KVDKIGQ 1809
Cdd:PHA03247 2810 AVLAPAAALPPAASPAGPLPPPTSAQPT-APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPaaparpPVRRLAR 2888
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1810 ILLTKACKKVtgSLEKGEEQYGADGETEGPGLETTTPGLMGTEQCSTELDSKTPTPSAPTllKMTSSPMGPSSTSTGPIL 1889
Cdd:PHA03247 2889 PAVSRSTESF--ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT--TDPAGAGEPSGAVPQPWL 2964
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1958759469 1890 pgGALPTSVRSVVTTLVPSELIS---TAPTTKGNHGGITS 1926
Cdd:PHA03247 2965 --GALVPGRVAVPRFRVPQPAPSreaPASSTPPLTGHSLS 3002
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
199-679 |
1.56e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.77 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 199 PNPELQPRTPRPASQSDAMDPllsGLHIQQ--------------QSHPSGSLPPAHHPMQPVPVNRQMNPANFPQLQQQQ 264
Cdd:PHA03247 2569 PPPRPAPRPSEPAVTSRARRP---DAPPQSarprapvddrgdprGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPT 2645
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 265 QQQQQQQQQQQQQQQQQLQTRplqqhqqQQPQGIRPQFTAPTQVPVPPGwnqlpsgalqPPPAQGSLgpmtTNQGWKKAP 344
Cdd:PHA03247 2646 VPPPERPRDDPAPGRVSRPRR-------ARRLGRAAQASSPPQRPRRRA----------ARPTVGSL----TSLADPPPP 2704
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 345 LPSPmqaqlQARPSLATVQTPSHPPPPYPFGSQQASQAhtnfpqmsNPGQFTAPQMKSLQGGPSRVPTPlqqphltnKSP 424
Cdd:PHA03247 2705 PPTP-----EPAPHALVSATPLPPGPAAARQASPALPA--------APAPPAVPAGPATPGGPARPARP--------PTT 2763
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 425 ASSPSSFQQGSPASSPTVNQTQQQMGPRPPQNNPL---SQGFQQPVSSPGRNPMVQQGNVPpnfmvmqqqppsqgppslh 501
Cdd:PHA03247 2764 AGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLpspWDPADPPAAVLAPAAALPPAASP------------------- 2824
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 502 pglgagqanpnfmQGQVPSTTAATPGNSGALQLQANQSVQHAGGQGAGPPqnqmqVSHGPPNMMQPSLMGIHGNINNQQA 581
Cdd:PHA03247 2825 -------------AGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGD-----VRRRPPSRSPAAKPAAPARPPVRRL 2886
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 582 GSSGVPQVTLGSMQGQPQQGPPSQLMGMHQQIVPSQGQMAQQQGTLNPQNPmiLSRAQLMPQGQMMVNAQNQNLGPSPQ- 660
Cdd:PHA03247 2887 ARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP--RPQPPLAPTTDPAGAGEPSGAVPQPWl 2964
|
490 500
....*....|....*....|....*
gi 1958759469 661 ------RMTPPKQMLPQQGPQMMAP 679
Cdd:PHA03247 2965 galvpgRVAVPRFRVPQPAPSREAP 2989
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1483-1802 |
2.57e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 42.98 E-value: 2.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1483 SGAPNVTIKPPGLTDLEVTPPAVSGEDLKK-------ASVIPTLQDPSSKEPSNSLNLPHSNEPCSTLAHPELSEVSSNI 1555
Cdd:pfam05109 446 TGLPSSTHVPTNLTAPASTGPTVSTADVTSptpagttSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTP 525
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1556 APSIP-PVMSRPVSSSSISTPLPPNQITVFVTSNPITTSSNTSAALPTHLQSALMSTVVT-MPNVGNKVMvseGQSAAQS 1633
Cdd:pfam05109 526 AVTTPtPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTpTPNATSPTV---GETSPQA 602
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1634 NARPQFITpvfiNSSSIIQVMKGSQPSTIPATPLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVT----PNVPSSSP--A 1707
Cdd:pfam05109 603 NTTNHTLG----GTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPSTSDNStshmPLLTSAHPtgG 678
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1708 PNIQTGRPLVLSSRATPVPLPSP-PCTSSPVVAPNPSVQQVK--ELNPDEASPQTNTSADQStlPSSQPTTVVSpllANS 1784
Cdd:pfam05109 679 ENITQVTPASTSTHHVSTSSPAPrPGTTSQASGPGNSSTSTKpgEVNVTKGTPPKNATSPQA--PSGQKTAVPT---VTS 753
|
330
....*....|....*...
gi 1958759469 1785 PGSSANRRSPVSSSKGKG 1802
Cdd:pfam05109 754 TGGKANSTTGGKHTTGHG 771
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1092-1398 |
3.63e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 42.60 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1092 SNSRKMVYQESPQNSSSPlgemPSLPEAGGSEVPSVSGGPSN--MPSHLVV--SQNQLMMTGPKPGPSPLSATQGATPQQ 1167
Cdd:pfam05109 414 TTTHKVIFSKAPESTTTS----PTLNTTGFAAPNTTTGLPSSthVPTNLTApaSTGPTVSTADVTSPTPAGTTSGASPVT 489
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1168 PPVNSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRPYYPQ-TPNNRPPS---TEPSEISLSPErlnasiaglfpPQINIP 1243
Cdd:pfam05109 490 PSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTpTPNATSPTlgkTSPTSAVTTPT-----------PNATSP 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1244 LPPRPNLNRGFDQQGLNPTTLKAIGQAPSNLTVSNPPNFAAPQAHKLDSVVvsSGKQSNPGTT---KRASPSNSRRSSPG 1320
Cdd:pfam05109 559 TPAVTTPTPNATIPTLGKTSPTSAVTTPTPNATSPTVGETSPQANTTNHTL--GGTSSTPVVTsppKNATSAVTTGQHNI 636
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958759469 1321 SSRKTTPSPGRQNSKAPklTLASQTSTTLLQNMELprnvLVGPTPLANPPLSGSFPNNNGLNSQNPTVPAPAVGTVVE 1398
Cdd:pfam05109 637 TSSSTSSMSLRPSSISE--TLSPSTSDNSTSHMPL----LTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTSQ 708
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1517-1887 |
6.56e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 41.44 E-value: 6.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1517 PTLQDPSSKEPSNSLNLPHSNEPCSTLAHPELSEVSSNIAPSIPPVMSRPVSSSSISTPLPPNQITVFVTSNPITTSSNT 1596
Cdd:pfam05109 432 PTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTS 511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1597 SAALPTHLQSALMSTVVT-MPNVGNKVMVSEGQSAAQSNARPQFITPVFINSSSIIQVMKGSQPSTIPATPLTTNS-GLM 1674
Cdd:pfam05109 512 AVTTPTPNATSPTPAVTTpTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTpNAT 591
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1675 PPSVAVVGPLHIPQNIKFSSAPVTPNV--PSSSPAPNIQTGRPLVLSSRATPVPLpsPPCTSSPVVAPNPSVQQVKELN- 1751
Cdd:pfam05109 592 SPTVGETSPQANTTNHTLGGTSSTPVVtsPPKNATSAVTTGQHNITSSSTSSMSL--RPSSISETLSPSTSDNSTSHMPl 669
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1752 PDEASPQTNTSADQSTLPSSQPTTVVSPLLANSPGSSANRRSPVSSSKGKgkvdKIGQILLTKACKKVTGSLEKGEE--- 1828
Cdd:pfam05109 670 LTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPGNSSTST----KPGEVNVTKGTPPKNATSPQAPSgqk 745
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958759469 1829 -------QYGADGETEGPGLETTTPGLMGTEQCSTELDSKTPTP-----SAPTLLKMTSSPMGPSSTSTGP 1887
Cdd:pfam05109 746 tavptvtSTGGKANSTTGGKHTTGHGARTSTEPTTDYGGDSTTPrtrynATTYLPPSTSSKLRPRWTFTSP 816
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Nucleic_acid_bd |
pfam13820 |
Putative nucleic acid-binding region; This is a family of putative nucleic acid-binding ... |
48-190 |
2.67e-60 |
|
Putative nucleic acid-binding region; This is a family of putative nucleic acid-binding proteins. Several members are annotated as being nuclear receptor coactivator 6 proteins but this could not be confirmed.
Pssm-ID: 463988 Cd Length: 143 Bit Score: 203.43 E-value: 2.67e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 48 IFVAFKGNIDDkdFKWKLDTILQSVPGLLHMESSKLKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQLRDLGILSV 127
Cdd:pfam13820 1 TFLAVKGNLRM--FQEKLDSIRENVAELLRTEKSKLKVRKVEPWNSVRVTFSIPREAALRLRLLAQHNDPRLRDLGILSV 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958759469 128 QIEGEGAINLALG---QNRSQDVRMnGPVVSGNSVRMEAGFPMASGPGLIRMTSPATVMMPQGGNA 190
Cdd:pfam13820 79 QIEGEGPINLTLAtmvQNPADDIIL-GCSTQLNSQRAEQGWTMLSALGLISDALPLHLRLAESGEY 143
|
|
| Med15 |
pfam09606 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
377-788 |
7.95e-12 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 70.81 E-value: 7.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 377 QQASQAHTNFPQMSNPGQFTAPQMKSLQGGPS---RVPTPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMGPRP 453
Cdd:pfam09606 60 QQQPQGGQGNGGMGGGQQGMPDPINALQNLAGqgtRPQMMGPMGPGPGGPMGQQMGGPGTASNLLASLGRPQMPMGGAGF 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 454 PQNNPLSQGFQQPVSSPGRNP--MVQQGNVPPNFMVMQQQPPSQGPPSLHPGLGAGQANPNFMQGQVPSTTAATPGNSGA 531
Cdd:pfam09606 140 PSQMSRVGRMQPGGQAGGMMQpsSGQPGSGTPNQMGPNGGPGQGQAGGMNGGQQGPMGGQMPPQMGVPGMPGPADAGAQM 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 532 LQLQANQSVQHAGGQGAGPPQNQMQvshGPPNMMQPSLMGIHGNINNQQAGSSGVPQVTLGSMQGQPQQGPPSQLMGMHQ 611
Cdd:pfam09606 220 GQQAQANGGMNPQQMGGAPNQVAMQ---QQQPQQQGQQSQLGMGINQMQQMPQGVGGGAGQGGPGQPMGPPGQQPGAMPN 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 612 QIVPSQGQMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPhnqmMGPQGQVL 691
Cdd:pfam09606 297 VMSIGDQNNYQQQQTRQQQQQQGGNHPAAHQQQMNQSVGQGGQVVALGGLNHLETWNPGNFGGLGANP----MQRGQPGM 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 692 LQQNPMIEQIMTNQMQGNKAQFNSQNQSNVMP------GPAQIMRGPTPNmQGNMVQFTGQMSGQMLPQQGPVSNSPSQV 765
Cdd:pfam09606 373 MSSPSPVPGQQVRQVTPNQFMRQSPQPSVPSPqgpgsqPPQSHPGGMIPS-PALIPSPSPQMSQQPAQQRTIGQDSPGGS 451
|
410 420
....*....|....*....|...
gi 1958759469 766 MGIQGQVLRPPGPSPHMAQQHTD 788
Cdd:pfam09606 452 LNTPGQSAVNSPLNPQEEQLYRE 474
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
430-698 |
2.12e-08 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 59.66 E-value: 2.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 430 SFQQGSPASSPTVNQTQQQMGPRPPQNNPLSQGFQQPVSSpGRNPMVQQGNVPpnfmvmqqqppsqgppSLHP-----GL 504
Cdd:pfam09770 103 NRQQPAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVRT-GYEKYKEPEPIP----------------DLQVdaslwGV 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 505 GAGQANPNFMQGQVPSTTAATPGNS----------GALQLQANQSVQHAGGQGAGPPQNQMQVSHGPPNMMQPSlmgihg 574
Cdd:pfam09770 166 APKKAAAPAPAPQPAAQPASLPAPSrkmmsleeveAAMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQ------ 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 575 ninnqqagssgvpqvtlgSMQGQPQQGPPSQLMGMHQQIVPSQGQMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQN 654
Cdd:pfam09770 240 ------------------IQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQ 301
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1958759469 655 LGPSPQRMTPPKQMLPQQGPQMMAP-HNQMMGPQGQVLLQQNPMI 698
Cdd:pfam09770 302 ILQNPNRLSAARVGYPQNPQPGVQPaPAHQAHRQQGSFGRQAPII 346
|
|
| Med15 |
pfam09606 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
268-733 |
3.25e-08 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 58.87 E-value: 3.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 268 QQQQQQQQQQQQQQLQTRPLQQHQQQQPQGIRPQFTAptqvPVPPGwNQLPSGALQPPPAQGSLGPMTTNQGWKK---AP 344
Cdd:pfam09606 64 QGGQGNGGMGGGQQGMPDPINALQNLAGQGTRPQMMG----PMGPG-PGGPMGQQMGGPGTASNLLASLGRPQMPmggAG 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 345 LPSPMQAQLQARPSLATvqtpsHPPPPYPFGSQQASQAHTNFPQMSnPGQFTAPQMKSLQGGPSRVPTPLQ--------- 415
Cdd:pfam09606 139 FPSQMSRVGRMQPGGQA-----GGMMQPSSGQPGSGTPNQMGPNGG-PGQGQAGGMNGGQQGPMGGQMPPQmgvpgmpgp 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 416 ---QPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMgpRPPQNNPLSQGFQQPVSSPGRNPMVQQGNVPPNFMvmqqQP 492
Cdd:pfam09606 213 adaGAQMGQQAQANGGMNPQQMGGAPNQVAMQQQQPQ--QQGQQSQLGMGINQMQQMPQGVGGGAGQGGPGQPM----GP 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 493 PSQGPPSLHPGLGAGQANPNFMQGQVPSTTAATPGNSGALQLQANQSVQHAGGQGAGPPQNQMQVshgppnmmqpslmGI 572
Cdd:pfam09606 287 PGQQPGAMPNVMSIGDQNNYQQQQTRQQQQQQGGNHPAAHQQQMNQSVGQGGQVVALGGLNHLET-------------WN 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 573 HGNINNQQAGSSGVPQVTLGSM------QGQPQQGPPSQLMGMHQQIVPSQGQMAQQQGTLNPQNPMILSRAQLMPQGQM 646
Cdd:pfam09606 354 PGNFGGLGANPMQRGQPGMMSSpspvpgQQVRQVTPNQFMRQSPQPSVPSPQGPGSQPPQSHPGGMIPSPALIPSPSPQM 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 647 MVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPHNQMMGPQGQVLLQQNPMIEQIMTNQMQGNKAQFNSQNQsnvMPGPA 726
Cdd:pfam09606 434 SQQPAQQRTIGQDSPGGSLNTPGQSAVNSPLNPQEEQLYREKYRQLTKYIEPLKRMIAKMENDPGDIDKMNK---MKRLL 510
|
....*..
gi 1958759469 727 QIMRGPT 733
Cdd:pfam09606 511 EILSNPS 517
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
166-474 |
1.26e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 50.71 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 166 PMASGPGLIRMTSPATVMMPQGGNASSSMMAPGPNPELQPRTPRPASQSDAMDPLLSGLHIQQQSHPSGSLPPAHHP--- 242
Cdd:PHA03247 2614 PSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPtvg 2693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 243 -----MQPVPVNRQMNPANFPQLQQQQQQQQQQQQQQQQQQQQQLQTRPLQQHQQQQPQGI----RPQFTAPTQVPVPPG 313
Cdd:PHA03247 2694 sltslADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGParpaRPPTTAGPPAPAPPA 2773
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 314 WNQLPSGALQPPPAQGSLGPMTTNQGWKKAPLPSPMqAQLQARPSLATVQTPSHPPPPYPFGSQQASQAHTNFPQMSNP- 392
Cdd:PHA03247 2774 APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPA-AVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPl 2852
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 393 GQFTAPqmkslqGGPSRVPTPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMGP-RPPQNNPLSQGFQQPVSSPG 471
Cdd:PHA03247 2853 GGSVAP------GGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPeRPPQPQAPPPPQPQPQPPPP 2926
|
...
gi 1958759469 472 RNP 474
Cdd:PHA03247 2927 PQP 2929
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
604-775 |
1.61e-05 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 49.81 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 604 SQLMGMHQQIVPsqgqMAQQQGTLNPQNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMtPPKQMLPQQGPQMMAPhnqm 683
Cdd:TIGR01628 369 AHLQDQFMQLQP----RMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMP-TPMGPGGPLRPNGLAP---- 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 684 MGPQGQVLLQQNPMIEQimtNQMQGNKAQFNSQNQSNVMPGPAQimrGPTPNMQGNMVQFTGQMSgqmlpqqgpvSNSPS 763
Cdd:TIGR01628 440 MNAVRAPSRNAQNAAQK---PPMQPVMYPPNYQSLPLSQDLPQP---QSTASQGGQNKKLAQVLA----------SATPQ 503
|
170
....*....|..
gi 1958759469 764 QVMGIQGQVLRP 775
Cdd:TIGR01628 504 MQKQVLGERLFP 515
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
597-740 |
2.13e-05 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 49.42 E-value: 2.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 597 QPQQGPPSQ-LMGMHQQIVPSQGQMAQQQGTLNPQNPMilsraqLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQ 675
Cdd:TIGR01628 384 QLPMGSPMGgAMGQPPYYGQGPQQQFNGQPLGWPRMSM------MPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKP 457
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958759469 676 MMAPHNQMMGPQGQVLLQQNPmieqimtnQMQGNKAQFNSqnqsnvMPGPAQIMRGPTPNMQGNM 740
Cdd:TIGR01628 458 PMQPVMYPPNYQSLPLSQDLP--------QPQSTASQGGQ------NKKLAQVLASATPQMQKQV 508
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
593-794 |
3.34e-05 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 49.26 E-value: 3.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 593 SMQGQPQQGPPSQLMGMHQQIVPSQGQMAQQQGTLNPQNPmilsrAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQq 672
Cdd:pfam09770 202 AMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQ-----QQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPD- 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 673 gpqmmaPHNQMMGPQGQVLLQQNPmieqimtnqmqgnkaqfnsqnqsNVMPGPAQIMrgPTPNMQGNMVQftgQMSGQML 752
Cdd:pfam09770 276 ------PAQPSIQPQAQQFHQQPP-----------------------PVPVQPTQIL--QNPNRLSAARV---GYPQNPQ 321
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1958759469 753 PQQGPVSNSPSQvmgiqgqvlRPPGPSPHMAQQHTDPATTAN 794
Cdd:pfam09770 322 PGVQPAPAHQAH---------RQQGSFGRQAPIITHPQQLAQ 354
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1041-1261 |
6.79e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 6.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1041 PPRGPLNPDSQRVPMQQSgnVPVMVSLQGPASVPPSPDKQRMPMPVNTPLGSNSRKMVYQESPQNSSSP-LGEMPSLPEA 1119
Cdd:PHA03247 2744 VPAGPATPGGPARPARPP--TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAvLAPAAALPPA 2821
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1120 ---GGSEVPSVSGGPSNMPSHLVVSQNQLMMTG--------PKPGPSPLSATQGATPQQPPVNSLPSshghhfPNVAAPT 1188
Cdd:PHA03247 2822 aspAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGsvapggdvRRRPPSRSPAAKPAAPARPPVRRLAR------PAVSRST 2895
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958759469 1189 QTSRPKTPNRASPRPYYPQTPNNRPPSTEPSEISLSPERLnasiaglfPPQINIPLPPRPNLNRGFDQQGLNP 1261
Cdd:PHA03247 2896 ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPP--------PPRPQPPLAPTTDPAGAGEPSGAVP 2960
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1070-1553 |
8.52e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 8.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1070 PASVPPSPDK-----QRMPMPVNTPLGSNSRKMVYQESPQNSSSPLGEMPSLP-EAGGSEVPSVSGGPSNMPSHLVVSQN 1143
Cdd:PHA03247 2557 PAAPPAAPDRsvpppRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRgPAPPSPLPPDTHAPDPPPPSPSPAAN 2636
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1144 QLMMTGPKPGPSPLSATQGATPQQPPVNSLPSSHGHHfPNVAAPTQTSRPktpnRASPRPYYPQTPNNRPPSTEPSEISL 1223
Cdd:PHA03247 2637 EPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRA-AQASSPPQRPRR----RAARPTVGSLTSLADPPPPPPTPEPA 2711
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1224 SPERLNAsiaglfppqinIPLPPRPNLNRgfdqQGLNPTTLKAIGQAPSNLTVSnPPNFAAPQAHKLDSVVVSSGKQSNP 1303
Cdd:PHA03247 2712 PHALVSA-----------TPLPPGPAAAR----QASPALPAAPAPPAVPAGPAT-PGGPARPARPPTTAGPPAPAPPAAP 2775
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1304 GTTKRASPSNSRRSSPGSSRKTTPSPgRQNSKAPKLTLASQTSTTLLQNMELPRNVLVGPTPLANPPLSGSFPNnnglns 1383
Cdd:PHA03247 2776 AAGPPRRLTRPAVASLSESRESLPSP-WDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP------ 2848
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1384 qnptvPAPAVGTVVEDNKESLNVPQDSDCQNSQGRKEQVNTELKAVPIQEAKMVVPEdqskkdgQPLDPNKLPSVEENKT 1463
Cdd:PHA03247 2849 -----SLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFAL-------PPDQPERPPQPQAPPP 2916
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1464 LMSPAMREAPTSLSQLLDNSGAPNVTIKPPGLTDLEVTPPAVSGEDLKKASVIPTLQDPSSKEPSNSLNLPHSNEPCSTL 1543
Cdd:PHA03247 2917 PQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPL 2996
|
490
....*....|
gi 1958759469 1544 AHPELSEVSS 1553
Cdd:PHA03247 2997 TGHSLSRVSS 3006
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1007-1397 |
8.88e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.54 E-value: 8.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1007 SQPQSQQQQQQMMMMLMMQQDPKSIRLPVSQNVHPPR----GPLNPDSQRVPMQQSGNVPVMVSLQG--PASVPPSPDKQ 1080
Cdd:PHA03247 2574 APRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGpappSPLPPDTHAPDPPPPSPSPAANEPDPhpPPTVPPPERPR 2653
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1081 RMPMPvntPLGSNSRKMVYQESPQNSSSPLG--EMPSLPEAGGS-----EVPSVSGGPSNMPSHLVVSQNQLMMTGPKPG 1153
Cdd:PHA03247 2654 DDPAP---GRVSRPRRARRLGRAAQASSPPQrpRRRAARPTVGSltslaDPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1154 PSPLSATQGATPQQPPVNSLPsshghhfpnvAAPTQTSRPKTPNrASPRPYYPQTPNNRPP--STEPSEISLSPERLNAS 1231
Cdd:PHA03247 2731 ASPALPAAPAPPAVPAGPATP----------GGPARPARPPTTA-GPPAPAPPAAPAAGPPrrLTRPAVASLSESRESLP 2799
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1232 IAGLFPPQINIPLPPRPNLNRGFDQQGLNPTTLKAIGQAPSnltvsnPPNFAAPQAHKLDSVVVSSGKQSNPGTTKRASP 1311
Cdd:PHA03247 2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPP------PPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAA 2873
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1312 SNSRRSSPGSSRKTTPSPGRQNS---------KAPKLTLASQTSTTLLQNMELPRNVLVGPTPLANPPLSGSFPNNNGLN 1382
Cdd:PHA03247 2874 KPAAPARPPVRRLARPAVSRSTEsfalppdqpERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAG 2953
|
410
....*....|....*
gi 1958759469 1383 SQNPTVPAPAVGTVV 1397
Cdd:PHA03247 2954 EPSGAVPQPWLGALV 2968
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1659-1926 |
1.52e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.77 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1659 PSTIPATPLTTNSGLMPPSVAVVGPlhiPQNIKFSSAPVTPNVPSSSPAPniQTGRPLVLSSRATPVPLPSPPCTS---S 1735
Cdd:PHA03247 2735 LPAAPAPPAVPAGPATPGGPARPAR---PPTTAGPPAPAPPAAPAAGPPR--RLTRPAVASLSESRESLPSPWDPAdppA 2809
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1736 PVVAPNPSVQQVKELNPDEASPQTNTSAdQSTLPSSQPTTVVSPLLANSPGSSANRRSPVSSSKGKG------KVDKIGQ 1809
Cdd:PHA03247 2810 AVLAPAAALPPAASPAGPLPPPTSAQPT-APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPaaparpPVRRLAR 2888
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1810 ILLTKACKKVtgSLEKGEEQYGADGETEGPGLETTTPGLMGTEQCSTELDSKTPTPSAPTllKMTSSPMGPSSTSTGPIL 1889
Cdd:PHA03247 2889 PAVSRSTESF--ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT--TDPAGAGEPSGAVPQPWL 2964
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1958759469 1890 pgGALPTSVRSVVTTLVPSELIS---TAPTTKGNHGGITS 1926
Cdd:PHA03247 2965 --GALVPGRVAVPRFRVPQPAPSreaPASSTPPLTGHSLS 3002
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
199-679 |
1.56e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.77 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 199 PNPELQPRTPRPASQSDAMDPllsGLHIQQ--------------QSHPSGSLPPAHHPMQPVPVNRQMNPANFPQLQQQQ 264
Cdd:PHA03247 2569 PPPRPAPRPSEPAVTSRARRP---DAPPQSarprapvddrgdprGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPT 2645
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 265 QQQQQQQQQQQQQQQQQLQTRplqqhqqQQPQGIRPQFTAPTQVPVPPGwnqlpsgalqPPPAQGSLgpmtTNQGWKKAP 344
Cdd:PHA03247 2646 VPPPERPRDDPAPGRVSRPRR-------ARRLGRAAQASSPPQRPRRRA----------ARPTVGSL----TSLADPPPP 2704
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 345 LPSPmqaqlQARPSLATVQTPSHPPPPYPFGSQQASQAhtnfpqmsNPGQFTAPQMKSLQGGPSRVPTPlqqphltnKSP 424
Cdd:PHA03247 2705 PPTP-----EPAPHALVSATPLPPGPAAARQASPALPA--------APAPPAVPAGPATPGGPARPARP--------PTT 2763
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 425 ASSPSSFQQGSPASSPTVNQTQQQMGPRPPQNNPL---SQGFQQPVSSPGRNPMVQQGNVPpnfmvmqqqppsqgppslh 501
Cdd:PHA03247 2764 AGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLpspWDPADPPAAVLAPAAALPPAASP------------------- 2824
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 502 pglgagqanpnfmQGQVPSTTAATPGNSGALQLQANQSVQHAGGQGAGPPqnqmqVSHGPPNMMQPSLMGIHGNINNQQA 581
Cdd:PHA03247 2825 -------------AGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGD-----VRRRPPSRSPAAKPAAPARPPVRRL 2886
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 582 GSSGVPQVTLGSMQGQPQQGPPSQLMGMHQQIVPSQGQMAQQQGTLNPQNPmiLSRAQLMPQGQMMVNAQNQNLGPSPQ- 660
Cdd:PHA03247 2887 ARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP--RPQPPLAPTTDPAGAGEPSGAVPQPWl 2964
|
490 500
....*....|....*....|....*
gi 1958759469 661 ------RMTPPKQMLPQQGPQMMAP 679
Cdd:PHA03247 2965 galvpgRVAVPRFRVPQPAPSREAP 2989
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
376-483 |
2.30e-03 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 43.10 E-value: 2.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 376 SQQASQAHTNFPQMSNPGQFTAPQMKSLQGGPSRVPTPLQQPHLTNKSPASSPSSFQ-----QGSPASSPTVNQTQQQMG 450
Cdd:pfam09770 211 AQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQrpqspQPDPAQPSIQPQAQQFHQ 290
|
90 100 110
....*....|....*....|....*....|....
gi 1958759469 451 PRPPQNNPLSQGFQQP-VSSPGRNPMVQQGNVPP 483
Cdd:pfam09770 291 QPPPVPVQPTQILQNPnRLSAARVGYPQNPQPGV 324
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1483-1802 |
2.57e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 42.98 E-value: 2.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1483 SGAPNVTIKPPGLTDLEVTPPAVSGEDLKK-------ASVIPTLQDPSSKEPSNSLNLPHSNEPCSTLAHPELSEVSSNI 1555
Cdd:pfam05109 446 TGLPSSTHVPTNLTAPASTGPTVSTADVTSptpagttSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTP 525
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1556 APSIP-PVMSRPVSSSSISTPLPPNQITVFVTSNPITTSSNTSAALPTHLQSALMSTVVT-MPNVGNKVMvseGQSAAQS 1633
Cdd:pfam05109 526 AVTTPtPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTpTPNATSPTV---GETSPQA 602
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1634 NARPQFITpvfiNSSSIIQVMKGSQPSTIPATPLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVT----PNVPSSSP--A 1707
Cdd:pfam05109 603 NTTNHTLG----GTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPSTSDNStshmPLLTSAHPtgG 678
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1708 PNIQTGRPLVLSSRATPVPLPSP-PCTSSPVVAPNPSVQQVK--ELNPDEASPQTNTSADQStlPSSQPTTVVSpllANS 1784
Cdd:pfam05109 679 ENITQVTPASTSTHHVSTSSPAPrPGTTSQASGPGNSSTSTKpgEVNVTKGTPPKNATSPQA--PSGQKTAVPT---VTS 753
|
330
....*....|....*...
gi 1958759469 1785 PGSSANRRSPVSSSKGKG 1802
Cdd:pfam05109 754 TGGKANSTTGGKHTTGHG 771
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
632-761 |
3.26e-03 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 42.49 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 632 PMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMM---APHnQMMGPQGQVLLQQNPMIEQIMTnqMQG 708
Cdd:TIGR01628 355 PLYVALAQRKEQRRAHLQDQFMQLQPRMRQLPMGSPMGGAMGQPPYygqGPQ-QQFNGQPLGWPRMSMMPTPMGP--GGP 431
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1958759469 709 NKAQFNSQNQSNVMPGPAQIMRGPTPNMQGnmVQFTGQMSGQMLPQQGPVSNS 761
Cdd:TIGR01628 432 LRPNGLAPMNAVRAPSRNAQNAAQKPPMQP--VMYPPNYQSLPLSQDLPQPQS 482
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1092-1398 |
3.63e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 42.60 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1092 SNSRKMVYQESPQNSSSPlgemPSLPEAGGSEVPSVSGGPSN--MPSHLVV--SQNQLMMTGPKPGPSPLSATQGATPQQ 1167
Cdd:pfam05109 414 TTTHKVIFSKAPESTTTS----PTLNTTGFAAPNTTTGLPSSthVPTNLTApaSTGPTVSTADVTSPTPAGTTSGASPVT 489
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1168 PPVNSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRPYYPQ-TPNNRPPS---TEPSEISLSPErlnasiaglfpPQINIP 1243
Cdd:pfam05109 490 PSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTpTPNATSPTlgkTSPTSAVTTPT-----------PNATSP 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1244 LPPRPNLNRGFDQQGLNPTTLKAIGQAPSNLTVSNPPNFAAPQAHKLDSVVvsSGKQSNPGTT---KRASPSNSRRSSPG 1320
Cdd:pfam05109 559 TPAVTTPTPNATIPTLGKTSPTSAVTTPTPNATSPTVGETSPQANTTNHTL--GGTSSTPVVTsppKNATSAVTTGQHNI 636
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958759469 1321 SSRKTTPSPGRQNSKAPklTLASQTSTTLLQNMELprnvLVGPTPLANPPLSGSFPNNNGLNSQNPTVPAPAVGTVVE 1398
Cdd:pfam05109 637 TSSSTSSMSLRPSSISE--TLSPSTSDNSTSHMPL----LTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTSQ 708
|
|
| KAR9 |
pfam08580 |
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal ... |
1148-1305 |
4.43e-03 |
|
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localizes at the shmoo tip in mating cells and at the tip of the growing bud in anaphase.
Pssm-ID: 430088 [Multi-domain] Cd Length: 684 Bit Score: 42.12 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1148 TGPKPGPSPlSATQGATPQQPPVNSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRP---------YYPQTPNNRPPSTEP 1218
Cdd:pfam08580 511 TATSETPTP-ALRPPSRPQPPPPGNRPRWNASTNTNDLDVGHNFKPLTLTTPSPTPsrssrssstLPPVSPLSRDKSRSP 589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1219 SEISLSPERLNASIAGLFPPQINIPLPPRPNLNrgfdqqglNPTTLKAIGQAPSNLTVSNPPNFAAPQAHKLDSVVVSSG 1298
Cdd:pfam08580 590 APTCRSVSRASRRRASRKPTRIGSPNSRTSLLD--------EPPYPKLTLSKGLPRTPRNRQSYAGTSPSRSVSVSSGLG 661
|
....*..
gi 1958759469 1299 KQSNPGT 1305
Cdd:pfam08580 662 PQTRPGT 668
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
700-812 |
5.72e-03 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 41.72 E-value: 5.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 700 QIMTNQMQGNKAQFNSQNQSNVMPG--PAQIMRGPTPNMQGNMVQFTGQMSGQMLPQQGPvsNSPSQVMGIQ--GQVLRP 775
Cdd:TIGR01628 369 AHLQDQFMQLQPRMRQLPMGSPMGGamGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGP--GGPLRPNGLApmNAVRAP 446
|
90 100 110
....*....|....*....|....*....|....*..
gi 1958759469 776 PGPSPHMAQQHTDPATTANNDVNLSQMMPDVSMQQTS 812
Cdd:TIGR01628 447 SRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQST 483
|
|
| PABP-1234 |
TIGR01628 |
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
660-826 |
5.97e-03 |
|
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.
Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 41.72 E-value: 5.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 660 QRMTPPKQMLPQQGPQMMAPH--NQMMGPQGQVLL-QQNPmieqimtnQMQGNKAQFNSQNQSNvMPGPAQIMRGPTPNM 736
Cdd:TIGR01628 366 QRRAHLQDQFMQLQPRMRQLPmgSPMGGAMGQPPYyGQGP--------QQQFNGQPLGWPRMSM-MPTPMGPGGPLRPNG 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 737 QGNMVQFTGQMSGQmlpQQGPVSNSPsqvMGIQGQVLRPPGPSPHMAQQHTDPATTANNDVNLSQMMPDVSMQ-QTSMVP 815
Cdd:TIGR01628 437 LAPMNAVRAPSRNA---QNAAQKPPM---QPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQVLASATPQmQKQVLG 510
|
170
....*....|....*
gi 1958759469 816 ----PHVQSMQGNSA 826
Cdd:TIGR01628 511 erlfPLVEAIEPALA 525
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1517-1887 |
6.56e-03 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 41.44 E-value: 6.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1517 PTLQDPSSKEPSNSLNLPHSNEPCSTLAHPELSEVSSNIAPSIPPVMSRPVSSSSISTPLPPNQITVFVTSNPITTSSNT 1596
Cdd:pfam05109 432 PTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTS 511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1597 SAALPTHLQSALMSTVVT-MPNVGNKVMVSEGQSAAQSNARPQFITPVFINSSSIIQVMKGSQPSTIPATPLTTNS-GLM 1674
Cdd:pfam05109 512 AVTTPTPNATSPTPAVTTpTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTpNAT 591
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1675 PPSVAVVGPLHIPQNIKFSSAPVTPNV--PSSSPAPNIQTGRPLVLSSRATPVPLpsPPCTSSPVVAPNPSVQQVKELN- 1751
Cdd:pfam05109 592 SPTVGETSPQANTTNHTLGGTSSTPVVtsPPKNATSAVTTGQHNITSSSTSSMSL--RPSSISETLSPSTSDNSTSHMPl 669
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759469 1752 PDEASPQTNTSADQSTLPSSQPTTVVSPLLANSPGSSANRRSPVSSSKGKgkvdKIGQILLTKACKKVTGSLEKGEE--- 1828
Cdd:pfam05109 670 LTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPGNSSTST----KPGEVNVTKGTPPKNATSPQAPSgqk 745
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958759469 1829 -------QYGADGETEGPGLETTTPGLMGTEQCSTELDSKTPTP-----SAPTLLKMTSSPMGPSSTSTGP 1887
Cdd:pfam05109 746 tavptvtSTGGKANSTTGGKHTTGHGARTSTEPTTDYGGDSTTPrtrynATTYLPPSTSSKLRPRWTFTSP 816
|
|
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