|
Name |
Accession |
Description |
Interval |
E-value |
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
89-261 |
7.90e-27 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 109.88 E-value: 7.90e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 89 KKLTKQDNLALVKSL-------NlslskdggkKFRYIENLEKCVKLEVLNLSYNLIAKIEKVDKLLRLRELNLSYNKISK 161
Cdd:cd21340 12 KNITKIDNLSLCKNLkvlylydN---------KITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 162 IEGLENMCN------------------------------LQKLNLAGNEIEHIpgWFSKKLKSLRVLNLKGNKISSLQDV 211
Cdd:cd21340 83 VEGLENLTNleelhienqrlppgekltfdprslaalsnsLRVLNISGNNIDSL--EPLAPLRNLEQLDASNNQISDLEEL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1958764994 212 SK-LKPLQDLTSLTLIDNPVVALPHYLQFIIFHLRSLESLEGQPVTTQDRQ 261
Cdd:cd21340 161 LDlLSSWPSLRELDLTGNPVCKKPKYRDKIILASKSLEVLDGKEITDTERQ 211
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
452-1047 |
6.54e-26 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 115.80 E-value: 6.54e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 452 RLSELHHEIEAAEQ-KVLRATQEFKQLEEAIRQKKISEAEKDLLLKQLSGRLRHLNKLRQEALDLEAQLEKQRKEIAEKH 530
Cdd:COG1196 201 QLEPLERQAEKAERyRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 531 EEINSAQLATDLLdskdpkqshmKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQQLTDGQIAANEAL 610
Cdd:COG1196 281 LELEEAQAEEYEL----------LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 611 KKDLEgvisglqeylgtikgQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKELAELENALQEQHEV 690
Cdd:COG1196 351 EELEE---------------AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 691 NASLQQAQGDLSAYETELETQLK-LKDAETSQLKQELENLVRRTQLEQSVLQTELEKERQSLRDALGKAQSSEEKQQENS 769
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEeEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 770 ELRAQLKQLQDDNSLLKKQLKDFQSHLNHVVDGLIHPEEVAARVDELRkrlkLGAGEMRIHSPSDVLGKSLADLQKQ--- 846
Cdd:COG1196 496 LLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA----LAAALQNIVVEDDEVAAAAIEYLKAaka 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 847 ----FSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFKQACERALEARIkfDKRQHNARIQQLENEIHYLQEN 922
Cdd:COG1196 572 gratFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL--VAARLEAALRRAVTLAGRLREV 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 923 LKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKRREDARSQEQFLGLDTELKSLKKAVAASDKLAAAELTIAKEQLK 1002
Cdd:COG1196 650 TLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ 729
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1958764994 1003 SLHgTVMRINQERAEELQEAERSSREAMQAAKDLSRAEAEIELLQ 1047
Cdd:COG1196 730 LEA-EREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
438-1120 |
4.48e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.05 E-value: 4.48e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 438 QLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAI----RQKKISEAEKDLLLKQLSGRLRHLNKLRQEAL 513
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIsrleQQKQILRERLANLERQLEELEAQLEELESKLD 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 514 DLEAQLEKQRKEIAEKHEEINSAQlatDLLDSKDPKQSHMKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIK 593
Cdd:TIGR02168 334 ELAEELAELEEKLEELKEELESLE---AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 594 DLEQQLTDGQIAANEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENM 673
Cdd:TIGR02168 411 RLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 674 RKELAELENALQEQHEVNASLQQAQGDLSAYE----TELETQLKLKDAETSQLKQELENLVRRTqLEQSVLQTELEKERQ 749
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGLSGILgvlsELISVDEGYEAAIEAALGGRLQAVVVEN-LNAAKKAIAFLKQNE 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 750 SLRDAL--GKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLNHVVDGLIhpeeVAARVDELRKRLKLGAGEM 827
Cdd:TIGR02168 570 LGRVTFlpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVL----VVDDLDNALELAKKLRPGY 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 828 RIHSPSDVL---------GKSLADLQKQFSEI-LARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFKQACERALEAR 897
Cdd:TIGR02168 646 RIVTLDGDLvrpggvitgGSAKTNSSILERRReIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 898 IKF-----DKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKrredARSQEQFLGL 972
Cdd:TIGR02168 726 RQIsalrkDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI----EQLKEELKAL 801
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 973 DTELKSLKKAVAASdKLAAAELTIAKEQLKSLHGTVMRINQERAEELQEAERSSREAMQAAKDLSRAEAEIEL-LQHLLR 1051
Cdd:TIGR02168 802 REALDELRAELTLL-NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESeLEALLN 880
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958764994 1052 EREGQF------RDEMENAHVGSKGANLQLLEIEALKEAMAKQRAEItrlrdVLNLTGTgkKGGIENVVEEIAEL 1120
Cdd:TIGR02168 881 ERASLEealallRSELEELSEELRELESKRSELRRELEELREKLAQL-----ELRLEGL--EVRIDNLQERLSEE 948
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
96-250 |
6.91e-20 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 93.84 E-value: 6.91e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 96 NLALVKSLNLSlskdgGKKFRYI-ENLEKCVKLEVLNLSYNLIAKI-EKVDKLLRLRELNLSYNKISKI-EGLENMCNLQ 172
Cdd:COG4886 134 NLTNLKELDLS-----NNQLTDLpEPLGNLTNLKSLDLSNNQLTDLpEELGNLTNLKELDLSNNQITDLpEPLGNLTNLE 208
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958764994 173 KLNLAGNEIEHIPGWFSkKLKSLRVLNLKGNKISSLQDVSKLKplqDLTSLTLIDNPVVALPHYLQfiifhLRSLESL 250
Cdd:COG4886 209 ELDLSGNQLTDLPEPLA-NLTNLETLDLSNNQLTDLPELGNLT---NLEELDLSNNQLTDLPPLAN-----LTNLKTL 277
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
82-250 |
1.46e-18 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 89.61 E-value: 1.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 82 YITEALIKKLTKQDNLALVKSLNLSLSKDGGKKFRYIENLEKCVKLEVLNLSYNLIAKI-EKVDKLLRLRELNLSYNKIS 160
Cdd:COG4886 70 SLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSGNQLTDLpEELANLTNLKELDLSNNQLT 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 161 KI-EGLENMCNLQKLNLAGNEIEHIPGWFSkKLKSLRVLNLKGNKISSLQDVskLKPLQDLTSLTLIDNPVVALPHYLQf 239
Cdd:COG4886 150 DLpEPLGNLTNLKSLDLSNNQLTDLPEELG-NLTNLKELDLSNNQITDLPEP--LGNLTNLEELDLSGNQLTDLPEPLA- 225
|
170
....*....|.
gi 1958764994 240 iifHLRSLESL 250
Cdd:COG4886 226 ---NLTNLETL 233
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
258-985 |
7.26e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 89.73 E-value: 7.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 258 QDRQEAFERFSlEEIERLEKDLEKKTVETEELKNKQTKFLEEI-KHQDKLNKSLKEEAMLQKQScEELESDLNTKKEllk 336
Cdd:TIGR02168 284 EELQKELYALA-NEISRLEQQKQILRERLANLERQLEELEAQLeELESKLDELAEELAELEEKL-EELKEELESLEA--- 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 337 qktvELTRACQKQYELEQelafyKIDAKFEPLNYYPSEYAEmdkspdespyIGKSRYKRNmfATETYIVSDAQAVQVRKm 416
Cdd:TIGR02168 359 ----ELEELEAELEELES-----RLEELEEQLETLRSKVAQ----------LELQIASLN--NEIERLEARLERLEDRR- 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 417 vpdgGQLRHEHAPRAQAPPDVQLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDLLLK 496
Cdd:TIGR02168 417 ----ERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 497 QLSGRLRHLNKLRQEALDLEAQLEK---------QRKEIAEKHEEINSAQLATDL-------LDSKDPKQSHMKAQKRGK 560
Cdd:TIGR02168 493 SLERLQENLEGFSEGVKALLKNQSGlsgilgvlsELISVDEGYEAAIEAALGGRLqavvvenLNAAKKAIAFLKQNELGR 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 561 EQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQQ-----------------LTDGQIAANEALKKDLEGVISGLQE 623
Cdd:TIGR02168 573 VTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFdpklrkalsyllggvlvVDDLDNALELAKKLRPGYRIVTLDG 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 624 YL----GTIKGQAAQAQNecrklqdekeTLLQRLTEVKQEKDELEIVAMDAENMRKELAELENALQEqhevnasLQQAQG 699
Cdd:TIGR02168 653 DLvrpgGVITGGSAKTNS----------SILERRREIEELEEKIEELEEKIAELEKALAELRKELEE-------LEEELE 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 700 DLSAYETELETQLKLKDAETSQLKQELENLVRRTQlEQSVLQTELEKERQSLRDALGKAQSSEEKQQENSE-LRAQLKQL 778
Cdd:TIGR02168 716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIA-QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEeLEAQIEQL 794
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 779 QDDNSLLKKQLKDFQSHLNhvvdglihpeevAARVDELRKRLKLGAGEMRIHSpsdvLGKSLADLQKQF---SEILARSQ 855
Cdd:TIGR02168 795 KEELKALREALDELRAELT------------LLNEEAANLRERLESLERRIAA----TERRLEDLEEQIeelSEDIESLA 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 856 WEKEEAQVRERKLHEEMALQQEKLANGQEEFKQACERALEARikfdkrqhnARIQQLENEIHYLQENLKSMEKIQGLTDL 935
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELS---------EELRELESKRSELRRELEELREKLAQLEL 929
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 1958764994 936 QLQEADEEKERILAQLQELEKKKRREDARSQE----QFLGLDTELKSLKKAVAA 985
Cdd:TIGR02168 930 RLEGLEVRIDNLQERLSEEYSLTLEEAEALENkiedDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
440-1134 |
8.17e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 89.73 E-value: 8.17e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 440 EDTGKQIVAAQ---TRLSELHHEIEAAEQKVLR---ATQEFKQLEEAIRQKKIS---------EAEKDLLLKQLSGRLRH 504
Cdd:TIGR02168 175 KETERKLERTRenlDRLEDILNELERQLKSLERqaeKAERYKELKAELRELELAllvlrleelREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 505 LNKLRQEALDLEAQLEKQRKEIAEKHEEINSAQLATDLLDSKDPKQSHMKAQKRGKEQQLDIMNKQYT----QLESRLDE 580
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEaqleELESKLDE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 581 ILCRIATETEEIKDLEQQLTD--GQIAANEALKKDLEGVISGLQEYLGT-------IKGQAAQAQNECRKLQDEKETLLQ 651
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESleAELEELEAELEELESRLEELEEQLETlrskvaqLELQIASLNNEIERLEARLERLED 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 652 RLTEVKQEKDEL--EIVAMDAENMRKELAELENALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELENL 729
Cdd:TIGR02168 415 RRERLQQEIEELlkKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 730 VRRTQ----LEQSVLQTELEKERQS-LRDALGKAQSSEEKQQENSE--LRAQLKQLQDDNslLKKQLKDFQSHLNHVVDG 802
Cdd:TIGR02168 495 ERLQEnlegFSEGVKALLKNQSGLSgILGVLSELISVDEGYEAAIEaaLGGRLQAVVVEN--LNAAKKAIAFLKQNELGR 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 803 LIHPEEVAARVDELR-KRLKLGAGEMRIHSPSDVLGKSLADLQKQFSEILARSQW------------------------- 856
Cdd:TIGR02168 573 VTFLPLDSIKGTEIQgNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVvddldnalelakklrpgyrivtldg 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 857 -------------EKEEAQVRERK-----LHEEMALQQEKLANGQEEFKQAceRALEARIKFDKRQHNARIQQLENEIHY 918
Cdd:TIGR02168 653 dlvrpggvitggsAKTNSSILERRreieeLEEKIEELEEKIAELEKALAEL--RKELEELEEELEQLRKELEELSRQISA 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 919 LQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKRREDARSQEqflgLDTELKSLKKAVAAsdklAAAELTIAK 998
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE----AEAEIEELEAQIEQ----LKEELKALR 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 999 EQLKSLHGTVMRINQERAEELQEAERSSREAMQAAKDLSRAEAEIELLQHLLREREGQFRDEMENAHVGSKGANLQLLEI 1078
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNER 882
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958764994 1079 EALKEAMAKQRAEITRLRDvlnltgtgkkgGIENVVEEIAELRHAVSAQNEYISSM 1134
Cdd:TIGR02168 883 ASLEEALALLRSELEELSE-----------ELRELESKRSELRRELEELREKLAQL 927
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
82-250 |
5.92e-17 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 84.60 E-value: 5.92e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 82 YITEALIKKLTKQDNLALVKSLNLSLSKDGGKKFRYIENLEKCVKLEVLNLSYNliakiEKVDKLLRLRELNLSYNKISK 161
Cdd:COG4886 53 LSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN-----EELSNLTNLESLDLSGNQLTD 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 162 I-EGLENMCNLQKLNLAGNEIEHIPGWFSkKLKSLRVLNLKGNKISSLQDVskLKPLQDLTSLTLIDNPVVALPHYLQfi 240
Cdd:COG4886 128 LpEELANLTNLKELDLSNNQLTDLPEPLG-NLTNLKSLDLSNNQLTDLPEE--LGNLTNLKELDLSNNQITDLPEPLG-- 202
|
170
....*....|
gi 1958764994 241 ifHLRSLESL 250
Cdd:COG4886 203 --NLTNLEEL 210
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
436-1022 |
2.59e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.60 E-value: 2.59e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 436 DVQLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDLLLKQLSGRLRHLNKLRQEALDL 515
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 516 EAQLEKQRKEIAEKHEEINSAQLATdlldskdpKQSHMKAQKRGKEQQLDImnkqyTQLESRLDEILCRIATETEEIKDL 595
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEEL--------AEELLEALRAAAELAAQL-----EELEEAEEALLERLERLEEELEEL 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 596 EQQLTDGQIAANEALKKDLEgvisglqeylgtIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRK 675
Cdd:COG1196 427 EEALAELEEEEEEEEEALEE------------AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 676 ELAELENALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELENLVRRTQLEQSVLQTELEKERQSLRDAL 755
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRA 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 756 GKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLNHVVDGLIHPEEVAARVDELRKRLKLGAGEMRIHSPSDV 835
Cdd:COG1196 575 TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 836 LGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFKQACERALEARIKfDKRQHNARIQQLENE 915
Cdd:COG1196 655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE-EELEEEALEEQLEAE 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 916 IHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKRR----------EDARSQEQFLGLDTELKSLKKAvaa 985
Cdd:COG1196 734 REELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAlgpvnllaieEYEELEERYDFLSEQREDLEEA--- 810
|
570 580 590
....*....|....*....|....*....|....*..
gi 1958764994 986 sdklaaaeltiakeqLKSLHGTVMRINQERAEELQEA 1022
Cdd:COG1196 811 ---------------RETLEEAIEEIDRETRERFLET 832
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
431-1098 |
1.29e-15 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 82.58 E-value: 1.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 431 AQAPPDVQLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISeaeKDLLLKQLSGRLRHLNKLRQ 510
Cdd:pfam12128 238 KIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRT---LDDQWKEKRDELNGELSAAD 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 511 EALdleAQLEKQRKEIAEKH---EEINSAQLATDlLDSKDPKQSHMKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIAT 587
Cdd:pfam12128 315 AAV---AKDRSELEALEDQHgafLDADIETAAAD-QEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNR 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 588 ETEEIKDLEQQLTDGQIAANEALKKDLEGVISGLQEylgtikgqaaQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVA 667
Cdd:pfam12128 391 DIAGIKDKLAKIREARDRQLAVAEDDLQALESELRE----------QLEAGKLEFNEEEYRLKSRLGELKLRLNQATATP 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 668 MDAENMRKELAELENALQEQHEVNASLQQAQGDLSAYETELETQL-KLKDAE--TSQLKQELENLVRRTQLEQSVLQTEL 744
Cdd:pfam12128 461 ELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASeALRQASrrLEERQSALDELELQLFPQAGTLLHFL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 745 EKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKdfqshlnhvVDGLIHPEEVAARvDELRKRLklga 824
Cdd:pfam12128 541 RKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLD---------LKRIDVPEWAASE-EELRERL---- 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 825 gemrihspsDVLGKSL---ADLQKQFSEILARSQWEKEEAQVRE---RKLHEEMALQQEKLANGQEEFKQACERALEARi 898
Cdd:pfam12128 607 ---------DKAEEALqsaREKQAAAEEQLVQANGELEKASREEtfaRTALKNARLDLRRLFDEKQSEKDKKNKALAER- 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 899 kfdKRQHNARIQQLENEIHYLQENLKSM-EKIQGltdlQLQEADEEKeriLAQLQELEKKKRREDARSQEQFL----GLD 973
Cdd:pfam12128 677 ---KDSANERLNSLEAQLKQLDKKHQAWlEEQKE----QKREARTEK---QAYWQVVEGALDAQLALLKAAIAarrsGAK 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 974 TELKSLKKAVAAS-DKLAAAELTIAK--EQLKSLHGTVMRINQERAEELQ----EAERSSREAMQAAKDLSRAEAEIELL 1046
Cdd:pfam12128 747 AELKALETWYKRDlASLGVDPDVIAKlkREIRTLERKIERIAVRRQEVLRyfdwYQETWLQRRPRLATQLSNIERAISEL 826
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 1958764994 1047 QHLLREREGQFRDEMENAHVGSKGANLQLLEieaLKEAMAKQRAEITRLRDV 1098
Cdd:pfam12128 827 QQQLARLIADTKLRRAKLEMERKASEKQQVR---LSENLRGLRCEMSKLATL 875
|
|
| LRR_9 |
pfam14580 |
Leucine-rich repeat; |
130-279 |
6.06e-15 |
|
Leucine-rich repeat;
Pssm-ID: 405295 [Multi-domain] Cd Length: 175 Bit Score: 74.03 E-value: 6.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 130 LNLSYNLIAKIEKVDKLL-RLRELNLSYNKISKIEGLENMCNLQKLNLAGNEIEHIPGWFSKKLKSLRVLNLKGNKISSL 208
Cdd:pfam14580 24 LDLRGYKIPIIENLGATLdQFDTIDFSDNEIRKLDGFPLLRRLKTLLLNNNRICRIGEGLGEALPNLTELILTNNNLQEL 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958764994 209 QDVSKLKPLQDLTSLTLIDNPVVALPHYLQFIIFHLRSLESLEGQPVTTQDRQEAFERFSLEEIERLEKDL 279
Cdd:pfam14580 104 GDLDPLASLKKLTFLSLLRNPVTNKPHYRLYVIYKVPQLRLLDFRKVKQKERQAAEKMFRSKQGKQLAKEI 174
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
451-1131 |
1.40e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 78.96 E-value: 1.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 451 TRLSELHHEIEAAE--QKVLRATQEFKQLEEAiRQKKISEAEKDLLLKQLSGRLRHLNKLRQEALDLEAQLEKQRKEIAE 528
Cdd:TIGR02169 198 QQLERLRREREKAEryQALLKEKREYEGYELL-KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 529 KHEEIN------SAQLATDLLDSKdPKQSHMKAQKRGKEQQLDIMNKQYTQLESRLDEILcriatetEEIKDLEQQLTDG 602
Cdd:TIGR02169 277 LNKKIKdlgeeeQLRVKEKIGELE-AEIASLERSIAEKERELEDAEERLAKLEAEIDKLL-------AEIEELEREIEEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 603 QIaaneaLKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEivamdaENMRKELAELEN 682
Cdd:TIGR02169 349 RK-----RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK------RELDRLQEELQR 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 683 ALQEQHEVNASLQQAQGDLSAYETELET-QLKLKDAET--SQLKQELENL---VRRTQLEQSVLQTELEKERQSLRDALG 756
Cdd:TIGR02169 418 LSEELADLNAAIAGIEAKINELEEEKEDkALEIKKQEWklEQLAADLSKYeqeLYDLKEEYDRVEKELSKLQRELAEAEA 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 757 KAQSSEEKQQENselRAQLKQLQDDNSLLKKQLKDFQS---------------HLNHVVdglIHPEEVAARVDELRKRLK 821
Cdd:TIGR02169 498 QARASEERVRGG---RAVEEVLKASIQGVHGTVAQLGSvgeryataievaagnRLNNVV---VEDDAVAKEAIELLKRRK 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 822 LGA------GEMR-IHSPSDVLGKS--------LADLQKQF---------SEILARSQWEKEE--AQVRERKLHEEMALQ 875
Cdd:TIGR02169 572 AGRatflplNKMRdERRDLSILSEDgvigfavdLVEFDPKYepafkyvfgDTLVVEDIEAARRlmGKYRMVTLEGELFEK 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 876 QEKLANGQEEFKQACERALEARIKFdkRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELE 955
Cdd:TIGR02169 652 SGAMTGGSRAPRGGILFSRSEPAEL--QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 956 KKKRREDARSQEqflgLDTELKSLKKAVAASD--------KLAAAELTIAKEQLK------SLHGTVMRINQERAEELQE 1021
Cdd:TIGR02169 730 QEEEKLKERLEE----LEEDLSSLEQEIENVKselkeleaRIEELEEDLHKLEEAlndleaRLSHSRIPEIQAELSKLEE 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 1022 AERSSREAMQAA-KDLSRAEAEIELLQHLLREREGQFRD-EMENAHVGSKGANLQlLEIEALKEAMAKQRAEITRLRDVL 1099
Cdd:TIGR02169 806 EVSRIEARLREIeQKLNRLTLEKEYLEKEIQELQEQRIDlKEQIKSIEKEIENLN-GKKEELEEELEELEAALRDLESRL 884
|
730 740 750
....*....|....*....|....*....|..
gi 1958764994 1100 nltgTGKKGGIENVVEEIAELRHAVSAQNEYI 1131
Cdd:TIGR02169 885 ----GDLKKERDELEAQLRELERKIEELEAQI 912
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
436-1102 |
1.09e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.25 E-value: 1.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 436 DVQLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDLLLKQLSGRLRHLNKLRQEALDL 515
Cdd:TIGR02168 308 RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 516 EAQLEKQ----RKEIAEKHEEINSAQLATDLLDS--KDPKQSHMKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATET 589
Cdd:TIGR02168 388 VAQLELQiaslNNEIERLEARLERLEDRRERLQQeiEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELR 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 590 EEIKDLEQQLTDGQIAANEaLKKDLEGVISGLQEYLGTIKGQAAQAQNecrklQDEKETLLQRLTEV--KQEKDELEIVA 667
Cdd:TIGR02168 468 EELEEAEQALDAAERELAQ-LQARLDSLERLQENLEGFSEGVKALLKN-----QSGLSGILGVLSELisVDEGYEAAIEA 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 668 MDAENM------RKELAELENALQEQHEVN------------ASLQQAQGDLSAYETELETQLKLKDAETSQLKQELENL 729
Cdd:TIGR02168 542 ALGGRLqavvveNLNAAKKAIAFLKQNELGrvtflpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYL 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 730 VRRTQLEQSvLQTELEKERQSLRDAL--------------------GKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQL 789
Cdd:TIGR02168 622 LGGVLVVDD-LDNALELAKKLRPGYRivtldgdlvrpggvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKAL 700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 790 KD----FQSHLNHVVDGLIHPEEVAARVDELRKRL-KLGAGEMRIHSPSDVLGKSLADLQKQFSEILARSQWEKEEAQVR 864
Cdd:TIGR02168 701 AElrkeLEELEEELEQLRKELEELSRQISALRKDLaRLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 865 ErklhEEMALQQEKLANGQEEFKQACERALEARikfdkrqhnARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEK 944
Cdd:TIGR02168 781 E----AEIEELEAQIEQLKEELKALREALDELR---------AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI 847
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 945 ERILAQLQELEKkkrrEDARSQEQFLGLDTELKSLKKAVAASDKLAAAeltiAKEQLKSLHGTVMRINQERAEELQEAER 1024
Cdd:TIGR02168 848 EELSEDIESLAA----EIEELEELIEELESELEALLNERASLEEALAL----LRSELEELSEELRELESKRSELRRELEE 919
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958764994 1025 SSREAMQAAKDLSRAEAEIELLQHLLREregQFRDEMENAhvgSKGANLQLLEIEALKEAMAKQRAEITRLRDVlNLT 1102
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQERLSE---EYSLTLEEA---EALENKIEDDEEEARRRLKRLENKIKELGPV-NLA 990
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
808-1101 |
1.36e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.74 E-value: 1.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 808 EVAARVDELRKRLKLGAGEMRIHSpsdvlgksLADLQKQFSEILArsqwEKEEAQVRERKLHEEMALQQEKLANGQEEFK 887
Cdd:COG1196 210 EKAERYRELKEELKELEAELLLLK--------LRELEAELEELEA----ELEELEAELEELEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 888 QACERALEARIKFdkRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKRREDARSQE 967
Cdd:COG1196 278 ELELELEEAQAEE--YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 968 QFLGLDTELKSLKKAVAASDKLAAAELTIAKEQLKSLHGTVMRINQERAEELQEAERSSREAMQAAKDLSRAEAEIELLQ 1047
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1958764994 1048 HLLREREGQFRDEMENAHVGSKGANLQLLEIEALKEAMAKQRAEITRLRDVLNL 1101
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
270-824 |
1.26e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 1.26e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 270 EEIERLEKDLEKKTVETEELKNKQTKFLEEIKHQDKLNKSLKEEAMLQKQSCEELESDLNTKKELLKQKTVELTRACQKQ 349
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 350 YELEQELAfyKIDAKFEplnyypseyAEMDKSPDESPYIGKSRYKRNMFATETYIVSDAQAVQVRKMvpDGGQLRHEHAP 429
Cdd:COG1196 326 AELEEELE--ELEEELE---------ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL--EELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 430 RAQAPPDVQLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDLLLKQLSGRLRHLNKLR 509
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 510 QEALDLEAQLEKQRKEIAEKHEEINSAQlATDLLDSKDPKQSHMKAQKRGKEQQLDIM----NKQYTQLESRLDEILCRI 585
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAE-ADYEGFLEGVKAALLLAGLRGLAGAVAVLigveAAYEAALEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 586 ATETEEIkdleqqltdgQIAANEALKKDLEGVISGLQeyLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEI 665
Cdd:COG1196 552 VVEDDEV----------AAAAIEYLKAAKAGRATFLP--LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 666 VAMDAENMRKELAELENALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELENLVRRTQLEQSVLQTELE 745
Cdd:COG1196 620 DTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 746 KERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNsLLKKQLKDFQSHLNHVVDGLIHP---EEVAARVDELRKRLK- 821
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE-LLEELLEEEELLEEEALEELPEPpdlEELERELERLEREIEa 778
|
...
gi 1958764994 822 LGA 824
Cdd:COG1196 779 LGP 781
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
83-250 |
1.35e-12 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 71.12 E-value: 1.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 83 ITEALIKKLTKQDNLALVKSLNLSLSKDGGKKFRYIENLEKCVKLEVLNLSYNLIAKIEKVDKLLRLRELNLSYNkiski 162
Cdd:COG4886 32 LLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN----- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 163 EGLENMCNLQKLNLAGNEIEHIPGWFSkKLKSLRVLNLKGNKISSLQDVskLKPLQDLTSLTLIDNPVVALPHylqfIIF 242
Cdd:COG4886 107 EELSNLTNLESLDLSGNQLTDLPEELA-NLTNLKELDLSNNQLTDLPEP--LGNLTNLKSLDLSNNQLTDLPE----ELG 179
|
....*...
gi 1958764994 243 HLRSLESL 250
Cdd:COG4886 180 NLTNLKEL 187
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
497-1060 |
1.20e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 69.56 E-value: 1.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 497 QLSGRLRHLNKLRQEALDLEAQLEkQRKEIAEKHEEINSAQLATDLLDSKDPKQSHMKAQKRgkeqqldimnkqYTQLES 576
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIE-LLEPIRELAERYAAARERLAELEYLRAALRLWFAQRR------------LELLEA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 577 RLDEIlcriateTEEIKDLEQQltdgqIAANEALKKDLEGVISGLQEYLGTIKGQA-AQAQNECRKLQDEKETLLQRLTE 655
Cdd:COG4913 296 ELEEL-------RAELARLEAE-----LERLEARLDALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRAR 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 656 VKQEkdeLEIVAMDAENMRKELAELENALQEQHEvnaSLQQAQGDLSAYETELETQLKLKDAETSQLKQELENLVRRtql 735
Cdd:COG4913 364 LEAL---LAALGLPLPASAEEFAALRAEAAALLE---ALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR--- 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 736 eQSVLQTELEKERQSLRDALGKAQS------------SEEKQQENS---------------------------------- 769
Cdd:COG4913 435 -KSNIPARLLALRDALAEALGLDEAelpfvgelievrPEEERWRGAiervlggfaltllvppehyaaalrwvnrlhlrgr 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 770 ----ELRAQLKQLQ----DDNSLLKK---QLKDFQSHLNHVvdgLIHPEEVA--ARVDELRK-----------RLKLGAG 825
Cdd:COG4913 514 lvyeRVRTGLPDPErprlDPDSLAGKldfKPHPFRAWLEAE---LGRRFDYVcvDSPEELRRhpraitragqvKGNGTRH 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 826 EM--RIHSPSD-VLGKS----LADLQKQfseiLARSQWEKEEAQVRERKLHEEMALQQEKLANgqeefKQACERALEARI 898
Cdd:COG4913 591 EKddRRRIRSRyVLGFDnrakLAALEAE----LAELEEELAEAEERLEALEAELDALQERREA-----LQRLAEYSWDEI 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 899 kfDKRQHNARIQQLENEihyLQENLKSMEKIQGLTDlQLQEADEEKERILAQLQELEKKKRRedarsqeqflgLDTELKS 978
Cdd:COG4913 662 --DVASAEREIAELEAE---LERLDASSDDLAALEE-QLEELEAELEELEEELDELKGEIGR-----------LEKELEQ 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 979 LKKAV-AASDKLAAAELTIAKEQLKSLhgtvmrinQERAEELQEAERSSREAMQAAKDLSRAEAEIELLQHLLREREGQF 1057
Cdd:COG4913 725 AEEELdELQDRLEAAEDLARLELRALL--------EERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAF 796
|
...
gi 1958764994 1058 RDE 1060
Cdd:COG4913 797 NRE 799
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
584-970 |
1.63e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 1.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 584 RIATETEEIKDLEQQLTDGQIAANEALKK--DLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKD 661
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKEleELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 662 ELEIVAMDAENMRKEL-AELENALQEQHEVNASLQQAQGDLSAYET---ELETQLKLKDAETSQLKQELENLVRRTQLEQ 737
Cdd:TIGR02168 758 ELEAEIEELEERLEEAeEELAEAEAEIEELEAQIEQLKEELKALREaldELRAELTLLNEEAANLRERLESLERRIAATE 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 738 SVLqTELEKERQSLRDALGKAQSSEEKQQEN-SELRAQLKQLQDDNSLLKKQLKDFQSHLNHVVDGLihpEEVAARVDEL 816
Cdd:TIGR02168 838 RRL-EDLEEQIEELSEDIESLAAEIEELEELiEELESELEALLNERASLEEALALLRSELEELSEEL---RELESKRSEL 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 817 RKRLKLgagemrihspsdvlgksladLQKQFSEILARsqweKEEAQVRERKLHEEMALQQEKLANGQEEfkqaceraLEA 896
Cdd:TIGR02168 914 RRELEE--------------------LREKLAQLELR----LEGLEVRIDNLQERLSEEYSLTLEEAEA--------LEN 961
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958764994 897 RIKFDKRQHNARIQQLENEIHYLQE-NLKSMEKIQGLTDlQLQEADEEKERILAQLQELEKKKRREDARSQEQFL 970
Cdd:TIGR02168 962 KIEDDEEEARRRLKRLENKIKELGPvNLAAIEEYEELKE-RYDFLTAQKEDLTEAKETLEEAIEEIDREARERFK 1035
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
509-1121 |
3.65e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 67.76 E-value: 3.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 509 RQEAL-DLEAQLEkqRKEIAEKHEEINSAQLAtdlLDSKDPKQSHMKAQKRGKEQQLDimnkqytqlesRLDEILCRIAT 587
Cdd:PRK02224 185 QRGSLdQLKAQIE--EKEEKDLHERLNGLESE---LAELDEEIERYEEQREQARETRD-----------EADEVLEEHEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 588 ETEEIKDLEQQLTDGQ--IAANEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELei 665
Cdd:PRK02224 249 RREELETLEAEIEDLRetIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEEL-- 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 666 vamdaenmRKELAELENALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELENlvRRTQLEqsvlqtELE 745
Cdd:PRK02224 327 --------RDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVED--RREEIE------ELE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 746 KERQSLRDALGKAQSSEEKQQENSELraqlkqLQDDNSLLKKQLKDFQSHLnhvvdglihpEEVAARVDELRKRLKLGag 825
Cdd:PRK02224 391 EEIEELRERFGDAPVDLGNAEDFLEE------LREERDELREREAELEATL----------RTARERVEEAEALLEAG-- 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 826 emriHSPSdvLGKSLADlqkqfSEILARSQWEKEEAQVRERKLhEEMALQQEKLANGQEEFKQACERALEARIKFDKRQH 905
Cdd:PRK02224 453 ----KCPE--CGQPVEG-----SPHVETIEEDRERVEELEAEL-EDLEEEVEEVEERLERAEDLVEAEDRIERLEERRED 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 906 -NARIQQLENEIHYLQENLKSMEKiqgltDLQLQEADEEKERILAQLQELEKKKRREDARSQEQFLG-LDTELKSLKKAV 983
Cdd:PRK02224 521 lEELIAERRETIEEKRERAEELRE-----RAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAeLKERIESLERIR 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 984 AASDKLAAAEltiakEQLKSLhgtvmrinQERAEELQEAERSSREAMQAakdlsraeaeiellqhlLREREGQFRDEMEN 1063
Cdd:PRK02224 596 TLLAAIADAE-----DEIERL--------REKREALAELNDERRERLAE-----------------KRERKRELEAEFDE 645
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 1064 AHVGSKGANLQLLE--IEALKEAMAKQRAEITRLRDvlnltgtgKKGGIENVVEEIAELR 1121
Cdd:PRK02224 646 ARIEEAREDKERAEeyLEQVEEKLDELREERDDLQA--------EIGAVENELEELEELR 697
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
119-244 |
1.09e-10 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 65.34 E-value: 1.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 119 ENLEKCVKLEVLNLSYNLIAKIEKVDKLLRLRELNLSYNKISKIEGLENMCNLQKLNLAGNEIEHIPGWFSKKLKSLRVL 198
Cdd:COG4886 222 EPLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSL 301
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1958764994 199 NLKGNKISSLQDVSKLKPLQDLTSLTLIDNPVVALPHYLQFIIFHL 244
Cdd:COG4886 302 LLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLL 347
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
148-205 |
5.45e-10 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 55.99 E-value: 5.45e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958764994 148 RLRELNLSYNKISKIEG--LENMCNLQKLNLAGNEIEHI-PGWFSKkLKSLRVLNLKGNKI 205
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLsPGAFSG-LPSLRYLDLSGNRL 61
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
631-1060 |
6.23e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 63.25 E-value: 6.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 631 QAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKELAELENALQeQHEVNASLQQAQGDLSAYETELEt 710
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ-LLPLYQELEALEAELAELPERLE- 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 711 QLKLKDAETSQLKQELENLVRRTQLEQSVLQTELEKERQSLRDALGKAQSS-EEKQQENSELRAQLKQLQDDNSLLKKQL 789
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEElEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 790 KDFQSHLNHvvdglihpEEVAARVDELRKRLKLGAGEMRIHSPSDVLGKSLADLQK----------QFSEILARSQWEKE 859
Cdd:COG4717 230 EQLENELEA--------AALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGvlflvlgllaLLFLLLAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 860 EAQVRERKLHEEMALQQEKLANGQEEFKqaCERALEARIKFDKRQHNARIQQLENEIHYLQENLK---SMEKIQGLTDLQ 936
Cdd:COG4717 302 KEAEELQALPALEELEEEELEELLAALG--LPPDLSPEELLELLDRIEELQELLREAEELEEELQleeLEQEIAALLAEA 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 937 LQEADEEKERILAQLQEL-EKKKRREDARSQ-EQFLGLDTELKSLKKAVAASDKLA--AAELTIAKEQLKSLHGTVMRIN 1012
Cdd:COG4717 380 GVEDEEELRAALEQAEEYqELKEELEELEEQlEELLGELEELLEALDEEELEEELEelEEELEELEEELEELREELAELE 459
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1958764994 1013 Q-----ERAEELQEAERSSREAMQAAKDLSRAEAEIELLQHLLREREGQFRDE 1060
Cdd:COG4717 460 AeleqlEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
629-958 |
9.17e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 9.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 629 KGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKEL-AELENALQEQHEVNASLQQAQGDLSAYE-- 705
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIeKEIEQLEQEEEKLKERLEELEEDLSSLEqe 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 706 --------TELETQLKLKDAETSQLKQELENLVRRtqLEQSVLQT------ELEKERQSLRDALGKAQSSEEKQQENSEL 771
Cdd:TIGR02169 753 ienvkselKELEARIEELEEDLHKLEEALNDLEAR--LSHSRIPEiqaelsKLEEEVSRIEARLREIEQKLNRLTLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 772 RAQLKQ-LQDDNSLLKKQLKDFQSHLnhvvdglihpEEVAARVDELRKRLKLGAGEMRihspsdVLGKSLADLQKQFSEI 850
Cdd:TIGR02169 831 LEKEIQeLQEQRIDLKEQIKSIEKEI----------ENLNGKKEELEEELEELEAALR------DLESRLGDLKKERDEL 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 851 ---LARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFKQaceraLEARIKFDKR--QHNARIQQLENEIHYLQENLKS 925
Cdd:TIGR02169 895 eaqLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE-----IEDPKGEDEEipEEELSLEDVQAELQRVEEEIRA 969
|
330 340 350
....*....|....*....|....*....|...
gi 1958764994 926 MEKIQGLtdlqlqeADEEKERILAQLQELEKKK 958
Cdd:TIGR02169 970 LEPVNML-------AIQEYEEVLKRLDELKEKR 995
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
577-1096 |
9.82e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 63.01 E-value: 9.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 577 RLDEILCRIATETEEIKDLEQQLTDGQ-IAANEALKKDLEGVISGLQEY-----LGTIKGQAAQAQNECRKLQDEKETLL 650
Cdd:COG4913 236 DLERAHEALEDAREQIELLEPIRELAErYAAARERLAELEYLRAALRLWfaqrrLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 651 QRLTEVKQEKDELEIVAMDAENMRKELAElenalQEQHEVNASLQQAQGDLSAYETELEtQLKLKDAETsqlKQELENLV 730
Cdd:COG4913 316 ARLDALREELDELEAQIRGNGGDRLEQLE-----REIERLERELEERERRRARLEALLA-ALGLPLPAS---AEEFAALR 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 731 RRTQLeqsvLQTELEKERQSLRDALGKAQSSEEKQQEN-SELRAQLKQLQDDNSLLKKQLKDFQSHLNHV---------- 799
Cdd:COG4913 387 AEAAA----LLEALEEELEALEEALAEAEAALRDLRRElRELEAEIASLERRKSNIPARLLALRDALAEAlgldeaelpf 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 800 -----------------VDGLIHP------------EEVAARVDELRKRLKLGAGEMRIHSPSDVLGKSLAD-------- 842
Cdd:COG4913 463 vgelievrpeeerwrgaIERVLGGfaltllvppehyAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDslagkldf 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 843 ------------LQKQFSEILARSQWE--------KEEAQVRERKLHEEMALQQEKLAN---GQE-----EFKQACERAL 894
Cdd:COG4913 543 kphpfrawleaeLGRRFDYVCVDSPEElrrhpraiTRAGQVKGNGTRHEKDDRRRIRSRyvlGFDnraklAALEAELAEL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 895 EARIkfdkRQHNARIQQLENEIHYLQENLKSMEKIQgltdlQLQEADEEKERILAQLQELEKKKRREDARSQeqflgldt 974
Cdd:COG4913 623 EEEL----AEAEERLEALEAELDALQERREALQRLA-----EYSWDEIDVASAEREIAELEAELERLDASSD-------- 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 975 ELKSLKKAVAAsdklAAAELTIAKEQLKSLHGTVMRINQERA---EELQEAERSSREAMQAAKDLSRAEAEIELLQHLLR 1051
Cdd:COG4913 686 DLAALEEQLEE----LEAELEELEEELDELKGEIGRLEKELEqaeEELDELQDRLEAAEDLARLELRALLEERFAAALGD 761
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1958764994 1052 EREGQFRDEMENahvgskganlqllEIEALKEAMAKQRAEITRLR 1096
Cdd:COG4913 762 AVERELRENLEE-------------RIDALRARLNRAEEELERAM 793
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
440-794 |
1.16e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 62.73 E-value: 1.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 440 EDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDLLLKQlsgrlrhLNKLRQEALDLEAQL 519
Cdd:TIGR04523 162 NDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQ-------ISELKKQNNQLKDNI 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 520 EKQRKEIAEKHEEINSAQlaTDLLDSKDpKQSHMKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATET---------- 589
Cdd:TIGR04523 235 EKKQQEINEKTTEISNTQ--TQLNQLKD-EQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNnqkeqdwnke 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 590 --EEIKDLEQQLTD--GQIAANEALKKDLEGVISGLQEYLG-------TIKGQAAQAQNECRKLQDEKETLLQRLTEVKQ 658
Cdd:TIGR04523 312 lkSELKNQEKKLEEiqNQISQNNKIISQLNEQISQLKKELTnsesensEKQRELEEKQNEIEKLKKENQSYKQEIKNLES 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 659 EKDELEIVAMDAENMRKELAELENALQEQHEVnasLQQAQGDLSAYETELETQLKLKDAETSQLKQELENLVRRTQLEQ- 737
Cdd:TIGR04523 392 QINDLESKIQNQEKLNQQKDEQIKKLQQEKEL---LEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLEt 468
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958764994 738 --SVLQTELEKERQSLRDalgKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQS 794
Cdd:TIGR04523 469 qlKVLSRSINKIKQNLEQ---KQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKE 524
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
590-959 |
1.23e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 1.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 590 EEIKDLEQQLTDGQIAANEalkkdLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEivaMD 669
Cdd:TIGR02169 681 ERLEGLKRELSSLQSELRR-----IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE---QE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 670 AENMRKELAELENALQEQHEVNASLQQAQGDLsaYETELETQLKLKDAETSQLKQELENLVRRTQLEQSVLQtELEKERQ 749
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDL--EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLN-RLTLEKE 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 750 SLRDalgkaqSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLnhvvdglihpEEVAARVDELRKRLKLGAGEMRi 829
Cdd:TIGR02169 830 YLEK------EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL----------EELEAALRDLESRLGDLKKERD- 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 830 hspsdvlgkslaDLQKQFSEilARSQWEKEEAQVRERKLHeeMALQQEKLANGQEEFKQaceraLEARIKFDK------- 902
Cdd:TIGR02169 893 ------------ELEAQLRE--LERKIEELEAQIEKKRKR--LSELKAKLEALEEELSE-----IEDPKGEDEeipeeel 951
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958764994 903 --RQHNARIQQLENEIHYLQE-NLKSMEK----IQGLTDLQLQEA--DEEKERILAQLQELEKKKR 959
Cdd:TIGR02169 952 slEDVQAELQRVEEEIRALEPvNMLAIQEyeevLKRLDELKEKRAklEEERKAILERIEEYEKKKR 1017
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
460-1060 |
2.36e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 61.91 E-value: 2.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 460 IEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDLLLKQLSGRLRHLNKLRQEaldlEAQLEKQRKEIaekheeinsaqla 539
Cdd:TIGR00618 224 LEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQ----EAVLEETQERI------------- 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 540 tDLLDSKDPKQSHMKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQQLTDGQIAANEALKKDLEGVIS 619
Cdd:TIGR00618 287 -NRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVAT 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 620 GLQEylgtIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKELAELENALQEQHEVNASLQQAQG 699
Cdd:TIGR00618 366 SIRE----ISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 700 DLSAYETELETQLKLKDAETSQLKQELENLVRRTQLEQSVLQTELEKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQ 779
Cdd:TIGR00618 442 LCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDID 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 780 DDNSLLKKQLKDFQSHLNHVVDGlihpEEVAARVDELRKRLKLGAGEM---------------RIHSPSDVLGKSLADLQ 844
Cdd:TIGR00618 522 NPGPLTRRMQRGEQTYAQLETSE----EDVYHQLTSERKQRASLKEQMqeiqqsfsiltqcdnRSKEDIPNLQNITVRLQ 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 845 KQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFKQACERALEAR-----IKFDKRQHNARIQQLENEihYL 919
Cdd:TIGR00618 598 DLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHAlqltlTQERVREHALSIRVLPKE--LL 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 920 QENLKSMEKIQGLTDlQLQEADEEKERILAQLQELEKKKRREDARSQEQFLGldteLKSLKKAVAASDKLAAAELTIAKE 999
Cdd:TIGR00618 676 ASRQLALQKMQSEKE-QLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENA----SSSLGSDLAAREDALNQSLKELMH 750
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958764994 1000 QLKSLHGTVMRINQERAEELQEAERSSREAMQAAKDLSRAEAEIELLQHLLREREGQFRDE 1060
Cdd:TIGR00618 751 QARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQE 811
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
510-757 |
2.53e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.55 E-value: 2.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 510 QEALDLEAQLEKQRKEIAEKHEEINSAQlatdlldskdpkqshmkAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATET 589
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALK-----------------KEEKALLKQLAALERRIAALARRIRALEQELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 590 EEIKDLEQQLTDGQiAANEALKKDLEGVI-----SGLQEYLGTIKGQ--AAQAQNECRKLQDEKETLLQRLTEVKQEKDE 662
Cdd:COG4942 83 AELAELEKEIAELR-AELEAQKEELAELLralyrLGRQPPLALLLSPedFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 663 LEIVAMDAENMRKELAELENALQEQHEVNASLQQAQGDLSAyetELETQLKLKDAETSQLKQELENLVRR-TQLEQSVLQ 741
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLA---RLEKELAELAAELAELQQEAEELEALiARLEAEAAA 238
|
250
....*....|....*.
gi 1958764994 742 TELEKERQSLRDALGK 757
Cdd:COG4942 239 AAERTPAAGFAALKGK 254
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
452-1092 |
2.56e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.08 E-value: 2.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 452 RLSELHHEIEAAEQKVLRATQEFKQLEEAIR---QKKISEAEKDLLLKQLSgRLRHLNKLRQEALDLEAQLEKQRKEIAE 528
Cdd:PTZ00121 1177 KAEAARKAEEVRKAEELRKAEDARKAEAARKaeeERKAEEARKAEDAKKAE-AVKKAEEAKKDAEEAKKAEEERNNEEIR 1255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 529 KHEEINSAQLATDLLDSKdpKQSHMKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQQLTDGQIAANE 608
Cdd:PTZ00121 1256 KFEEARMAHFARRQAAIK--AEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADA 1333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 609 ALKKDLEGvisglQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMD----------AENMRKELA 678
Cdd:PTZ00121 1334 AKKKAEEA-----KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEkkkadeakkkAEEDKKKAD 1408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 679 ELENALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAET---SQLKQELENLVRRTqlEQSVLQTELEKERQSLRDAL 755
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAkkkAEEAKKAEEAKKKA--EEAKKADEAKKKAEEAKKAD 1486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 756 GKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLNHV-----VDGLIHPEEVAaRVDELRKRLKL-------G 823
Cdd:PTZ00121 1487 EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAeeakkADEAKKAEEKK-KADELKKAEELkkaeekkK 1565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 824 AGEMRIHSPSDVLGKSLADLQKQFSE----ILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEfKQACERALEARIK 899
Cdd:PTZ00121 1566 AEEAKKAEEDKNMALRKAEEAKKAEEarieEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE-KKKVEQLKKKEAE 1644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 900 FDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKRREDARSQEQFLGLDTELK-- 977
Cdd:PTZ00121 1645 EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKka 1724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 978 -SLKKAVAASDKLAAAELTIAKEQLKSLHGTVMRINQERAEELQEAERSSREAMQAAKDLSRAEAEIELLqhllrEREGQ 1056
Cdd:PTZ00121 1725 eEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM-----EVDKK 1799
|
650 660 670
....*....|....*....|....*....|....*.
gi 1958764994 1057 FRDEMENAHVGSKGANLQLLEIEALKEAMAKQRAEI 1092
Cdd:PTZ00121 1800 IKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEV 1835
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
259-1002 |
2.83e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 2.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 259 DRQEAFERFSLEEIERLEKDLEKKtvetEELKNKQTKfLEEIKHQDKLNKSLKEEAMLqkqscEELESDLNTKKELLKQK 338
Cdd:TIGR02169 187 ERLDLIIDEKRQQLERLRREREKA----ERYQALLKE-KREYEGYELLKEKEALERQK-----EAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 339 TVELTRACQKQYELEQELAfyKIDAKFEPLNyypSEYAEMDKSPDESPYIGKSRYKRNMFATETYiVSDAQAvQVRKMVP 418
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLE--ELNKKIKDLG---EEEQLRVKEKIGELEAEIASLERSIAEKERE-LEDAEE-RLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 419 DGGQLRHEHA--PRAQAPPDVQLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKiseAEKDLLLK 496
Cdd:TIGR02169 330 EIDKLLAEIEelEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK---REINELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 497 QLSGRLRHLNKLRQEALDLEAQLEKQRKEIAEKHEEINSAQL----ATDLLDSKDPKQSHMKAQKRGKEQQLDIMNKQYT 572
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALeikkQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELS 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 573 QLESRLDEILCRIATETEEIKdleqqltdGQIAANEALKKDLEGVIsGLQEYLGTIKGQ--------------------- 631
Cdd:TIGR02169 487 KLQRELAEAEAQARASEERVR--------GGRAVEEVLKASIQGVH-GTVAQLGSVGERyataievaagnrlnnvvvedd 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 632 --AAQAQNECRKLQDEKETLLQrLTEVKQEKDELEIVAMD-----AENMRKELAELENA---------------LQEQHE 689
Cdd:TIGR02169 558 avAKEAIELLKRRKAGRATFLP-LNKMRDERRDLSILSEDgvigfAVDLVEFDPKYEPAfkyvfgdtlvvedieAARRLM 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 690 VNASLQQAQGDL-------------SAYETELETQLKLKDAETSQLKQELENLVRRTQLEQSVLQTELEKERQSLRDAlg 756
Cdd:TIGR02169 637 GKYRMVTLEGELfeksgamtggsraPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDA-- 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 757 kaqsseekQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLNHVVDGLIHPE----EVAARVDELRK-----RLKLGAGEM 827
Cdd:TIGR02169 715 --------SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKselkELEARIEELEEdlhklEEALNDLEA 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 828 RI-HSPSDVLGKSLADLQKQFSEILARSQwekeEAQVRERKLHEEMALQQEKLANGQE-----EFKQACERALEARIKFD 901
Cdd:TIGR02169 787 RLsHSRIPEIQAELSKLEEEVSRIEARLR----EIEQKLNRLTLEKEYLEKEIQELQEqridlKEQIKSIEKEIENLNGK 862
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 902 KRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKRREDARSQEQFlgldTELKSLKK 981
Cdd:TIGR02169 863 KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE----EELSEIED 938
|
810 820
....*....|....*....|.
gi 1958764994 982 AVAASDKLAAAELTIAKEQLK 1002
Cdd:TIGR02169 939 PKGEDEEIPEEELSLEDVQAE 959
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
436-753 |
3.21e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 3.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 436 DVQLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDLLLKQLSgrlRHLNKLRQEALDL 515
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE---QEIENVKSELKEL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 516 EAQLEKQRKEIAEKHEEINSaqLATDLLDSKDPKqshMKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDL 595
Cdd:TIGR02169 764 EARIEELEEDLHKLEEALND--LEARLSHSRIPE---IQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 596 EQQL--TDGQIAANEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIvamDAENM 673
Cdd:TIGR02169 839 QEQRidLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA---QIEKK 915
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 674 RKELAELENALQEQHEVNASLQQAQGDLSAYETELETQLKLKdAETSQLKQELENL-------------VRRTQLEQSVL 740
Cdd:TIGR02169 916 RKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQ-AELQRVEEEIRALepvnmlaiqeyeeVLKRLDELKEK 994
|
330
....*....|...
gi 1958764994 741 QTELEKERQSLRD 753
Cdd:TIGR02169 995 RAKLEEERKAILE 1007
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
444-662 |
3.23e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.16 E-value: 3.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 444 KQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQ--KKISEAEKDL--LLKQLSGRLRHLNKLRQEALDLEAQL 519
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAleRRIAALARRIraLEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 520 EKQRKEIAE------KHEEINSAQLatdLLDSKDPKQSHMKAQKRGkeQQLDIMNKQYTQLESRLDEILCRIATETEEIK 593
Cdd:COG4942 100 EAQKEELAEllralyRLGRQPPLAL---LLSPEDFLDAVRRLQYLK--YLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958764994 594 DLEQQLtdgqiAANEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDE 662
Cdd:COG4942 175 ELEALL-----AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
449-1021 |
5.50e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.44 E-value: 5.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 449 AQTRLSELHHEIEAAEQKVLRAT-----QEFKQLEEAIRQKKISEAEKDLLLKQLSGRLRHLNKLRQEALDLEAQLEKQR 523
Cdd:PRK02224 185 QRGSLDQLKAQIEEKEEKDLHERlngleSELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLR 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 524 KEIAEKHEEinsaqlatdlldskdpkQSHMKAQKRGKEQQLDimnkqytQLESRLDEILCRIATETEEIKDLEQQltdgq 603
Cdd:PRK02224 265 ETIAETERE-----------------REELAEEVRDLRERLE-------ELEEERDDLLAEAGLDDADAEAVEAR----- 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 604 iaanealKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEivaMDAENMRKELAELENA 683
Cdd:PRK02224 316 -------REELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE---SELEEAREAVEDRREE 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 684 LQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELenlvrrtqleqsvlqTELEKERQSLRDALGKAQ---- 759
Cdd:PRK02224 386 IEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRERE---------------AELEATLRTARERVEEAEalle 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 760 ------------------SSEEKQQENSELRAQLKQLQDDNSLLKKQLkdfqshlnhvvDGLIHPEEVAARVDELRKRLK 821
Cdd:PRK02224 451 agkcpecgqpvegsphveTIEEDRERVEELEAELEDLEEEVEEVEERL-----------ERAEDLVEAEDRIERLEERRE 519
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 822 LGAGEMRIHSPS-DVLGKSLADLQKQFSEILARSQWEKEEAQvrerKLHEEMALQQEKLANGQEEfKQACERALEARIKF 900
Cdd:PRK02224 520 DLEELIAERRETiEEKRERAEELRERAAELEAEAEEKREAAA----EAEEEAEEAREEVAELNSK-LAELKERIESLERI 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 901 DKRQhnARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKRREDARSQEQFLG--------L 972
Cdd:PRK02224 595 RTLL--AAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEqveekldeL 672
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 1958764994 973 DTELKSLKKAVAASDKlAAAELTIAKEQLKSLHGTVMRIN--QERAEELQE 1021
Cdd:PRK02224 673 REERDDLQAEIGAVEN-ELEELEELRERREALENRVEALEalYDEAEELES 722
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
535-769 |
5.94e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.39 E-value: 5.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 535 SAQLATDLLDSKDPKQSHMKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQQL--TDGQIAANEALKK 612
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELaaLEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 613 DLEGVISGLQEYLgtikgqAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKELAELENALQEQHEVNA 692
Cdd:COG4942 94 ELRAELEAQKEEL------AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958764994 693 SLQQAQGDLSAYETELETQLKLKDAETSQLKQELENLVRRTQLEQSVLQtELEKERQSLRDALGKAQSSEEKQQENS 769
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELA-ELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
481-960 |
6.33e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 60.17 E-value: 6.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 481 IRQKKISEAEKDLllKQLSGRLRHLNKLRQEALDLEAQLEKQRKEIAEKHEEINSAQLATDLLDskdpkqshMKAQKRGK 560
Cdd:COG4717 68 LNLKELKELEEEL--KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP--------LYQELEAL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 561 EQQLDIMNKQYTQLESRLDEILCRIatetEEIKDLEQQLTDGQIAANEALKKDLEGVISGLQeylgtikgqaaQAQNECR 640
Cdd:COG4717 138 EAELAELPERLEELEERLEELRELE----EELEELEAELAELQEELEELLEQLSLATEEELQ-----------DLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 641 KLQDEKETLLQRLTEVKQEKDELEivamdaenmrKELAELENALQEQHEVNaSLQQAQGDLSAyETELETQLKLKDAETS 720
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELE----------EELEQLENELEAAALEE-RLKEARLLLLI-AAALLALLGLGGSLLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 721 QLKQELENLVRRTQLeQSVLQTELEKERQSLRDALGKAQSSEEKQQ-ENSELRAQLKQLQDDNSLLKKQLKDFQSHLNHV 799
Cdd:COG4717 271 LILTIAGVLFLVLGL-LALLFLLLAREKASLGKEAEELQALPALEElEEEELEELLAALGLPPDLSPEELLELLDRIEEL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 800 VdglihpeEVAARVDELRKRLKlgagemrihspsdvlgksLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKL 879
Cdd:COG4717 350 Q-------ELLREAEELEEELQ------------------LEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEEL 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 880 ANGQEEFKQACERALEARIKFDKRQHNARIQQLENEIHYLQENLKSM-EKIQGL--------TDLQLQEADEEKERILAQ 950
Cdd:COG4717 405 EELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELrEELAELeaeleqleEDGELAELLQELEELKAE 484
|
490
....*....|
gi 1958764994 951 LQELEKKKRR 960
Cdd:COG4717 485 LRELAEEWAA 494
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
444-820 |
7.48e-09 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 60.36 E-value: 7.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 444 KQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQL-------EEAIR-QKKISEAEKDLLlkQLSGRLRHLNKLRQEALDL 515
Cdd:PRK04863 300 RQLAAEQYRLVEMARELAELNEAESDLEQDYQAAsdhlnlvQTALRqQEKIERYQADLE--ELEERLEEQNEVVEEADEQ 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 516 EAQLEkQRKEIAEkhEEINS--AQLAtdlldskDPKQSHMKAQKRgkeqqldimNKQYTQLESRLDEI--LCRIATETEE 591
Cdd:PRK04863 378 QEENE-ARAEAAE--EEVDElkSQLA-------DYQQALDVQQTR---------AIQYQQAVQALERAkqLCGLPDLTAD 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 592 -IKDLEQQLTDGQIAANEALKkDLEGVISGLQEylgtIKGQAAQAQNECRKLQDE--KETLLQRLTEVKQEKDELEIVAM 668
Cdd:PRK04863 439 nAEDWLEEFQAKEQEATEELL-SLEQKLSVAQA----AHSQFEQAYQLVRKIAGEvsRSEAWDVARELLRRLREQRHLAE 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 669 DAENMRKELAELENALQEQHEVNASLQQAQGDLSA---YETELETQLKLKDAETSQLKQELENLV-RRTQLEQSvlQTEL 744
Cdd:PRK04863 514 QLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKnldDEDELEQLQEELEARLESLSESVSEAReRRMALRQQ--LEQL 591
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958764994 745 EKERQSLRdalGKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLkdfQSHLNHVVDGLIHPEEVAARVDELRKRL 820
Cdd:PRK04863 592 QARIQRLA---ARAPAWLAAQDALARLREQSGEEFEDSQDVTEYM---QQLLERERELTVERDELAARKQALDEEI 661
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
270-1094 |
1.78e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.21 E-value: 1.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 270 EEIERLEKDLEKKTVETEELKNKQTKFLEEIKHQDKLNKSLKEEAMLQKQSCEELESDLNTKKELLKQKTVELTRACQKQ 349
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 350 YELEQElafyKIDAKFEPLNYYPSEYAEMDKSpdespyigksrykrnmfatetyIVSDAQAVQVRKMVPDGGQLRHEHAP 429
Cdd:pfam02463 246 LRDEQE----EIESSKQEIEKEEEKLAQVLKE----------------------NKEEEKEKKLQEEELKLLAKEEEELK 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 430 RAQAPPDVQLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEK-DLLLKQLSGRLRHLNKL 508
Cdd:pfam02463 300 SELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELeKLQEKLEQLEEELLAKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 509 RQEALDLEAQLEKQRKEIAEKHEEINSAQLATDLLDSKDpkqshMKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATE 588
Cdd:pfam02463 380 KLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLE-----DLLKEEKKEELEILEEEEESIELKQGKLTEEKEELE 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 589 TEEIKDLEQQLTDGQIAANEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRK-------LQDEKETLLQRLTEVKQEKD 661
Cdd:pfam02463 455 KQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSglkvllaLIKDGVGGRIISAHGRLGDL 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 662 ELEIVAMDAENMRKELAELENALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELENLVRRTQLEQSVLQ 741
Cdd:pfam02463 535 GVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLE 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 742 TELE-------------KERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLNHVVDGLIHPEE 808
Cdd:pfam02463 615 ADEDdkrakvvegilkdTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEI 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 809 VAARVDELRKRLKLGA------------GEMRIHSPSDVLGKSLADLQKQFSEI---LARSQWEKEEAQVRERKLHEEMA 873
Cdd:pfam02463 695 LRRQLEIKKKEQREKEelkklkleaeelLADRVQEAQDKINEELKLLKQKIDEEeeeEEKSRLKKEEKEEEKSELSLKEK 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 874 LQQEKLANGQEEFKQACERALEARIKFDKR----------QHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEE 943
Cdd:pfam02463 775 ELAEEREKTEKLKVEEEKEEKLKAQEEELRaleeelkeeaELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 944 KERILAQLQELEKKKRREDARSQEQFLGLDTELKSLKKAVAASDKLAAAELTIAKEQLKSLHGTVMRINQERAEELQEAE 1023
Cdd:pfam02463 855 ELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYE 934
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958764994 1024 RSSREAMQAAKDLSRAEAEIELLQHLLREREGQFRDEMENAHVGSKgANLQLLEIEALKEAMAKQRAEITR 1094
Cdd:pfam02463 935 EEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAI-EEFEEKEERYNKDELEKERLEEEK 1004
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
438-1052 |
1.92e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.92 E-value: 1.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 438 QLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEaiRQKKISEAEKDLLlkqlsgrlrhlnKLRQEALDLEA 517
Cdd:PRK03918 194 LIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE--LKEEIEELEKELE------------SLEGSKRKLEE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 518 QLEKQRKEIAEKHEEINSaqlatdlLDSKDPKQSHMKaqkrGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQ 597
Cdd:PRK03918 260 KIRELEERIEELKKEIEE-------LEEKVKELKELK----EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 598 QLTDGQiaANEALKKDLEGVISGLQEYLGTIKGQaAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIvamdaENMRKEL 677
Cdd:PRK03918 329 RIKELE--EKEERLEELKKKLKELEKRLEELEER-HELYEEAKAKKEELERLKKRLTGLTPEKLEKEL-----EELEKAK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 678 AELENALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQE-LENLVRRTQLEQSVLQTELEKERQSLRDALG 756
Cdd:PRK03918 401 EEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEhRKELLEEYTAELKRIEKELKEIEEKERKLRK 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 757 KAQSSEEKQQENSELRAQLKqlqddnslLKKQLKDFQSHLNHvvdglIHPEEVAARVDELRK-RLKLGAGEMRIHSPSDV 835
Cdd:PRK03918 481 ELRELEKVLKKESELIKLKE--------LAEQLKELEEKLKK-----YNLEELEKKAEEYEKlKEKLIKLKGEIKSLKKE 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 836 LgKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFKQACERALEArikfdkRQHNARIQQLENE 915
Cdd:PRK03918 548 L-EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLEL------KDAEKELEREEKE 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 916 IHYLQENLKSMEKiqgltdlQLQEADEEKERILAQLQELEKKKRRED-ARSQEQFLGLDTELKSLKKAVaasdklaaael 994
Cdd:PRK03918 621 LKKLEEELDKAFE-------ELAETEKRLEELRKELEELEKKYSEEEyEELREEYLELSRELAGLRAEL----------- 682
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958764994 995 tiakEQLKSLHGTVMRINQERAEELQEAERSSREamqaAKDLSRAEAEIELLQHLLRE 1052
Cdd:PRK03918 683 ----EELEKRREEIKKTLEKLKEELEEREKAKKE----LEKLEKALERVEELREKVKK 732
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
445-729 |
3.78e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 3.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 445 QIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIR--QKKISEAEKDLLLKQLSGRLRHLNKLRQEALDLEAQLEKQ 522
Cdd:TIGR02169 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHklEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREI 817
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 523 RKEIAEKHEEinsAQLATDLLDSKDPKQSHMKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQQltdg 602
Cdd:TIGR02169 818 EQKLNRLTLE---KEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE---- 890
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 603 qiaanealKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVA---MDAENMRKELAE 679
Cdd:TIGR02169 891 --------RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPeeeLSLEDVQAELQR 962
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1958764994 680 LENALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELENL 729
Cdd:TIGR02169 963 VEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
641-1054 |
3.82e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.77 E-value: 3.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 641 KLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKEL----AELENALQEQHEVNASLQQAQGDLSAYETELETQLKLKD 716
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIkekeKELEEVLREINEISSELPELREELEKLEKEVKELEELKE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 717 AETSQLKQELENLVRRTQLEQSVLQT-----ELEKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKD 791
Cdd:PRK03918 239 EIEELEKELESLEGSKRKLEEKIRELeerieELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 792 FQSHLNHVVDGLIHPEEVAARVDELRKRLKlgagemrihspsdVLGKSLADLqKQFSEILARSQWEKEEAQVRERKLHEe 871
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEELKKKLK-------------ELEKRLEEL-EERHELYEEAKAKKEELERLKKRLTG- 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 872 maLQQEKLANGQEEFKQACERALEARIKFdkrqhNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEE-KERILAQ 950
Cdd:PRK03918 384 --LTPEKLEKELEELEKAKEEIEEEISKI-----TARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEhRKELLEE 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 951 LQELEKKKRREDARSQEQFLGLDTELKSLKKAVAASDKLAAAELTIakEQLKSLHGTVMRINQERAEE-LQEAERSSREA 1029
Cdd:PRK03918 457 YTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELA--EQLKELEEKLKKYNLEELEKkAEEYEKLKEKL 534
|
410 420
....*....|....*....|....*
gi 1958764994 1030 MQAAKDLSRAEAEIELLQHLLRERE 1054
Cdd:PRK03918 535 IKLKGEIKSLKKELEKLEELKKKLA 559
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
270-778 |
5.65e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.23 E-value: 5.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 270 EEIERLEKDLEKKTVETEELKNKQTKF---LEEIKHQDKLN----KSLKEEAMLQKQSCEELESDLNTKKELLKQktvEL 342
Cdd:COG4913 338 DRLEQLEREIERLERELEERERRRARLealLAALGLPLPASaeefAALRAEAAALLEALEEELEALEEALAEAEA---AL 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 343 TRACQKQYELEQELAFYKidAKfePLNYyPSEYAEM--------DKSPDESPYIGK---------------SRYKRNmFA 399
Cdd:COG4913 415 RDLRRELRELEAEIASLE--RR--KSNI-PARLLALrdalaealGLDEAELPFVGElievrpeeerwrgaiERVLGG-FA 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 400 TeTYIVSDAQAVQVRKMV---PDGGQLRHEHAPRAQAPPDV--------------------------------------- 437
Cdd:COG4913 489 L-TLLVPPEHYAAALRWVnrlHLRGRLVYERVRTGLPDPERprldpdslagkldfkphpfrawleaelgrrfdyvcvdsp 567
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 438 -QLEDTGKQI-VAAQTRLSELHHEIEA-------------AEQKVLRATQEFKQLEEAIRQKKISEAEKDLLLKQLSGRL 502
Cdd:COG4913 568 eELRRHPRAItRAGQVKGNGTRHEKDDrrrirsryvlgfdNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERR 647
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 503 RHLNKLrQEALDLEAQLEKQRKEIAEKHEEINSAQLATDLLdskdpkqshmkaqkRGKEQQLDIMNKQYTQLESRLDEIL 582
Cdd:COG4913 648 EALQRL-AEYSWDEIDVASAEREIAELEAELERLDASSDDL--------------AALEEQLEELEAELEELEEELDELK 712
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 583 CRIATETEEIKDLEQQLTDGQIAANEALKKDLEGVISGLQEYLGTIKGQAAQA------QNECRKLQDEKETLLQRLTEV 656
Cdd:COG4913 713 GEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERelrenlEERIDALRARLNRAEEELERA 792
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 657 --------KQEKDELEIVAMDAENMRKELAELEN-ALQEQHE--VNASLQQAQGDLSAYETELETQLKLKDAETSQLKQE 725
Cdd:COG4913 793 mrafnrewPAETADLDADLESLPEYLALLDRLEEdGLPEYEErfKELLNENSIEFVADLLSKLRRAIREIKERIDPLNDS 872
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958764994 726 LENLV----RRTQLEQSVLQTELEKE-RQSLRDALGKAQSSEEKQQENSelRAQLKQL 778
Cdd:COG4913 873 LKRIPfgpgRYLRLEARPRPDPEVREfRQELRAVTSGASLFDEELSEAR--FAALKRL 928
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
261-1105 |
6.66e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.05 E-value: 6.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 261 QEAFERFsLEEIERLEKDLEKKTVETEELKNKQTKFLEE--IKHQDKLNK-SLKEEAML-----QKQSCEELESDL-NTK 331
Cdd:pfam15921 73 KEHIERV-LEEYSHQVKDLQRRLNESNELHEKQKFYLRQsvIDLQTKLQEmQMERDAMAdirrrESQSQEDLRNQLqNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 332 KELLKQKTVELTRACQKQYELEQelaFYKIDAKFEP-LNYYPSEYAEMDKSPdespyiGKSRYKRNMFATetyivsdaqa 410
Cdd:pfam15921 152 HELEAAKCLKEDMLEDSNTQIEQ---LRKMMLSHEGvLQEIRSILVDFEEAS------GKKIYEHDSMST---------- 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 411 VQVRKMVPDGGQLRHEHapraqappDVQLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEfkQLEEAIRQKKIseae 490
Cdd:pfam15921 213 MHFRSLGSAISKILREL--------DTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQD--RIEQLISEHEV---- 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 491 kdlllkQLSGRLRHLNKLRQEALDLEAQLEKQrKEIAEKHEEINSAQLaTDLLDSKDPKQSHMKAQKRGKEQQLDIMNKQ 570
Cdd:pfam15921 279 ------EITGLTEKASSARSQANSIQSQLEII-QEQARNQNSMYMRQL-SDLESTVSQLRSELREAKRMYEDKIEELEKQ 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 571 YTQLESRLDEILCRIATETEEIKDLEQQLTDgQIAANEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEK---- 646
Cdd:pfam15921 351 LVLANSELTEARTERDQFSQESGNLDDQLQK-LLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNmevq 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 647 --ETLLQRLTEVKQEKDELEIVAMDAENMRKE-LAELENALQEQHEVnasLQQAQGDLSAYETELETQLKLKDAETSQLk 723
Cdd:pfam15921 430 rlEALLKAMKSECQGQMERQMAAIQGKNESLEkVSSLTAQLESTKEM---LRKVVEELTAKKMTLESSERTVSDLTASL- 505
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 724 QELENLVRRTQLEQSVLQTELEKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQshlnhvvdgl 803
Cdd:pfam15921 506 QEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMT---------- 575
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 804 ihpeevaarvdELRKRLKLGAGEMRIHSPSdvLGKSLADLQKQFSEIlaRSQWEKEEAQVRERKLH-EEMALQQEKLANG 882
Cdd:pfam15921 576 -----------QLVGQHGRTAGAMQVEKAQ--LEKEINDRRLELQEF--KILKDKKDAKIRELEARvSDLELEKVKLVNA 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 883 QEEFKQACERALEARIKFDKRQHNAR--IQQLENEIHYLQENLKS----MEKIQGLTDLQLQEADEEKERILAQLQELEK 956
Cdd:pfam15921 641 GSERLRAVKDIKQERDQLLNEVKTSRneLNSLSEDYEVLKRNFRNkseeMETTTNKLKMQLKSAQSELEQTRNTLKSMEG 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 957 KkrreDARSQEQFLGLDTELKSLKKAVAAsdklaaaeltiAKEQLKSLHGTVMRINQERAEELQEAERSSREAMQAAKDL 1036
Cdd:pfam15921 721 S----DGHAMKVAMGMQKQITAKRGQIDA-----------LQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEK 785
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958764994 1037 SRAEAEIELLqhllREREGQFRDEMENAHVGSKGANLQLLEIEalkEAMAKQRAEITRLR-----DVLNLTGTG 1105
Cdd:pfam15921 786 NKMAGELEVL----RSQERRLKEKVANMEVALDKASLQFAECQ---DIIQRQEQESVRLKlqhtlDVKELQGPG 852
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
170-227 |
6.99e-08 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 50.22 E-value: 6.99e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958764994 170 NLQKLNLAGNEIEHI-PGWFsKKLKSLRVLNLKGNKISSLQDVSklkpLQDLTSLTLID 227
Cdd:pfam13855 2 NLRSLDLSNNRLTSLdDGAF-KGLSNLKVLDLSNNLLTTLSPGA----FSGLPSLRYLD 55
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
438-798 |
8.30e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 8.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 438 QLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDL--LLKQLSGRLRHLNKLRQEALDL 515
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALeaELAELPERLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 516 EAQLEKQRKEIAEKHEEINSAQLATDLLDSKDPKQ-----SHMKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATETE 590
Cdd:COG4717 162 EEELEELEAELAELQEELEELLEQLSLATEEELQDlaeelEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 591 EIKDLEQQLTDGQIAANEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQE----------- 659
Cdd:COG4717 242 EERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALpaleeleeeel 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 660 KDELEIVAMDAENMRKELAELENALQEQHEVNASLQQA--QGDLSAYETELETQLKLKDAET-SQLKQELENLVRRTQLE 736
Cdd:COG4717 322 EELLAALGLPPDLSPEELLELLDRIEELQELLREAEELeeELQLEELEQEIAALLAEAGVEDeEELRAALEQAEEYQELK 401
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958764994 737 Q--SVLQTELEKERQSLRDALgKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLNH 798
Cdd:COG4717 402 EelEELEEQLEELLGELEELL-EALDEEELEEELEELEEELEELEEELEELREELAELEAELEQ 464
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
259-703 |
1.47e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.82 E-value: 1.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 259 DRQEAFErfslEEIERLEKDLEKKTVETEELKNKQTKFLEEIKHQDKLNKSLKEEAmlqkqscEELESDLNTKKELLKQK 338
Cdd:PRK02224 314 ARREELE----DRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEA-------AELESELEEAREAVEDR 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 339 TVELTracqkqyELEQEL-----AFYKIDAKFEPLNYYPSEYAEmdkspDESPYIGKSRYKRNMFATETYIVSDAQAVQV 413
Cdd:PRK02224 383 REEIE-------ELEEEIeelreRFGDAPVDLGNAEDFLEELRE-----ERDELREREAELEATLRTARERVEEAEALLE 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 414 RKMVPDGGQlrhehaPRAQAPPDVQLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDL 493
Cdd:PRK02224 451 AGKCPECGQ------PVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEEL 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 494 LLKQLSG----RLRhLNKLRQEALDLEAQLEKQRKEIAEKHEEINSAQLATDLLDSKDP----------KQSHMKAQKRG 559
Cdd:PRK02224 525 IAERRETieekRER-AEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAelkeriesleRIRTLLAAIAD 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 560 KEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQQLTDGQIAANEALKKDLEgvisglqEYLgtikgqaAQAQNEC 639
Cdd:PRK02224 604 AEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAE-------EYL-------EQVEEKL 669
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958764994 640 RKLQDEKETLLQRLTEVKQEKDELeivamdaENMRKELAELEN---ALQEQHEVNASLQQAQGDLSA 703
Cdd:PRK02224 670 DELREERDDLQAEIGAVENELEEL-------EELRERREALENrveALEALYDEAEELESMYGDLRA 729
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
445-783 |
1.90e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 55.73 E-value: 1.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 445 QIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIrqkkiseaekdLLLKQLSGRlrhLNKLRQEALDleaqlekqrK 524
Cdd:PRK04863 838 ELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGL-----------SALNRLLPR---LNLLADETLA---------D 894
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 525 EIAEKHEEINSAQLATDLLDSKDPKQSHMKAQK---RGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIK-------- 593
Cdd:PRK04863 895 RVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVsvlQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQrrahfsye 974
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 594 DLEQQLTDGQiAANEALKKDLEgvisGLQEYLGTIKGQAAQAQNECRK-------LQDEKETLLQRLTEVKQEKDELEIV 666
Cdd:PRK04863 975 DAAEMLAKNS-DLNEKLRQRLE----QAEQERTRAREQLRQAQAQLAQynqvlasLKSSYDAKRQMLQELKQELQDLGVP 1049
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 667 AmdAENMRKELA----ELENALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELEN----------LVRR 732
Cdd:PRK04863 1050 A--DSGAEERARarrdELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNakagwcavlrLVKD 1127
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1958764994 733 TQLEQSVLQTEL-EKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNS 783
Cdd:PRK04863 1128 NGVERRLHRRELaYLSADELRSMSDKALGALRLAVADNEHLRDVLRLSEDPK 1179
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
479-1100 |
1.95e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 1.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 479 EAIRQKKISEAEKDLLLKQLSGRLRHLNKLRQEALDLEA-QLEKQRKEIAEKHEEINSAqlatdlldskDPKQSHMKAQK 557
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQAlLKEKREYEGYELLKEKEAL----------ERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 558 RGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDL---EQQLTDGQIAANEALKKDLEGVISGLQEYLGTIKGQAAQ 634
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 635 AQNECRKLQDEKETLLQRLTEVKQEKDEL-EIVAMDAENMRKELAELEnalqeqhEVNASLQQAQGDLSAYETELEtqlK 713
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLtEEYAELKEELEDLRAELE-------EVDKEFAETRDELKDYREKLE---K 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 714 LKDAetsqlKQELENLVRRTQLEQSVLQTELEKERQSLRDALGK----AQSSEEKQQENSELRAQLKQLQDDNSLLKKQL 789
Cdd:TIGR02169 397 LKRE-----INELKRELDRLQEELQRLSEELADLNAAIAGIEAKinelEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 790 KDFQSHLNHVVDGLihpEEVAARVDELRKRLKLGAGEMRIHSP-SDVLGKSLADLQKQFSEILarsqwekeeaqvrerKL 868
Cdd:TIGR02169 472 YDLKEEYDRVEKEL---SKLQRELAEAEAQARASEERVRGGRAvEEVLKASIQGVHGTVAQLG---------------SV 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 869 HEEMALQQEKLANGQEEFKQACERALEAR-IKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTD--LQLQEADEEKE 945
Cdd:TIGR02169 534 GERYATAIEVAAGNRLNNVVVEDDAVAKEaIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGfaVDLVEFDPKYE 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 946 RILAQ-------LQELEKKKRREDarsQEQFLGLDTEL---------KSLKKAVAASDKLA-AAELTIAKEQLKSLHGTV 1008
Cdd:TIGR02169 614 PAFKYvfgdtlvVEDIEAARRLMG---KYRMVTLEGELfeksgamtgGSRAPRGGILFSRSePAELQRLRERLEGLKREL 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 1009 MRINQERAEELQEAERSSREAMQAAKDLSRAEAEIELLQhllrEREGQFRDEMENahvgsKGANLQLL--EIEALKEAMA 1086
Cdd:TIGR02169 691 SSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE----QEEEKLKERLEE-----LEEDLSSLeqEIENVKSELK 761
|
650
....*....|....
gi 1958764994 1087 KQRAEITRLRDVLN 1100
Cdd:TIGR02169 762 ELEARIEELEEDLH 775
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
438-800 |
2.16e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.41 E-value: 2.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 438 QLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDL---------LLKQLSGRLRHLNKL 508
Cdd:TIGR04523 282 KIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIIsqlneqisqLKKELTNSESENSEK 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 509 RQEALDLEAQLEKQRKEIAEKHEEINSAQLATDLLDSKDPKQshmKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATE 588
Cdd:TIGR04523 362 QRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQ---EKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKN 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 589 TEEIKDLEQqltdgQIAANEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAM 668
Cdd:TIGR04523 439 NSEIKDLTN-----QDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVK 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 669 DAENMRKELAELENALQ-EQHEVNASLQQAQGDLSAYETE-----LETQLKLKDAETSQLKQELENLvRRTQLEQSVLQT 742
Cdd:TIGR04523 514 DLTKKISSLKEKIEKLEsEKKEKESKISDLEDELNKDDFElkkenLEKEIDEKNKEIEELKQTQKSL-KKKQEEKQELID 592
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958764994 743 ELEKERQSLRDALgkaqssEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLNHVV 800
Cdd:TIGR04523 593 QKEKEKKDLIKEI------EEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLK 644
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
444-1067 |
2.22e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 55.34 E-value: 2.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 444 KQIVAAQTRLSELHHEIEAAEQKVLRATQefkQLEEAIRQKKISEAEKDLLLKQLSGRLRHLNKLRQEALdlEAQLEKQR 523
Cdd:COG3096 347 EKIERYQEDLEELTERLEEQEEVVEEAAE---QLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAI--QYQQAVQA 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 524 KEIAEKHEEIN--SAQLATDLLDSKDPKQSHMKAQKRGKEQQLDIMNKQYTQLESRLdEILCRIATETEEikdleqqlTD 601
Cdd:COG3096 422 LEKARALCGLPdlTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAY-ELVCKIAGEVER--------SQ 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 602 GQIAANEALK-----KDLEGVISGLQEYLGTIKgQAAQAQNECRKLQDEketLLQRLTEVKQEKDELEIVAMDAEnmrKE 676
Cdd:COG3096 493 AWQTARELLRryrsqQALAQRLQQLRAQLAELE-QRLRQQQNAERLLEE---FCQRIGQQLDAAEELEELLAELE---AQ 565
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 677 LAELENALQEQHEVNASLQQAQGDLSAYETELETQ----LKLKDAET---SQLKQELENLVRRTQLEQSVLqtELEKERQ 749
Cdd:COG3096 566 LEELEEQAAEAVEQRSELRQQLEQLRARIKELAARapawLAAQDALErlrEQSGEALADSQEVTAAMQQLL--EREREAT 643
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 750 SLRDALGKAQSSEEKQ-----QENSELRAQLKQLQD------------------------------------DNSLLKKQ 788
Cdd:COG3096 644 VERDELAARKQALESQierlsQPGGAEDPRLLALAErlggvllseiyddvtledapyfsalygparhaivvpDLSAVKEQ 723
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 789 LKDFQSHLNHVV----------DGLIHPEEVAARV------------------------------------DELRKRL-K 821
Cdd:COG3096 724 LAGLEDCPEDLYliegdpdsfdDSVFDAEELEDAVvvklsdrqwrysrfpevplfgraarekrleelraerDELAEQYaK 803
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 822 LGAGEMRI----HSPSDVLGKSLA------------DLQKQFSEILAR-SQWEKEEAQVRE-------------RKLHEE 871
Cdd:COG3096 804 ASFDVQKLqrlhQAFSQFVGGHLAvafapdpeaelaALRQRRSELERElAQHRAQEQQLRQqldqlkeqlqllnKLLPQA 883
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 872 MALQQEKLANGQEEFKQACERALEARIKFdkRQHNARIQQLENEIHYLQENLKSMEKIQgltdLQLQEADEEKERILAQL 951
Cdd:COG3096 884 NLLADETLADRLEELREELDAAQEAQAFI--QQHGKALAQLEPLVAVLQSDPEQFEQLQ----ADYLQAKEQQRRLKQQI 957
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 952 QELEKKKRREDARSQEQFLGLDTELKSLKKAVAASDKLAAAELTIAKEQLKSLHGTVMRINQERA----------EELQE 1021
Cdd:COG3096 958 FALSEVVQRRPHFSYEDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLAslkssrdakqQTLQE 1037
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958764994 1022 AER--------SSREAMQAA----------------------KDLSRAEAEIELLQHLLRERE---GQFRDEMENAHVG 1067
Cdd:COG3096 1038 LEQeleelgvqADAEAEERArirrdelheelsqnrsrrsqleKQLTRCEAEMDSLQKRLRKAErdyKQEREQVVQAKAG 1116
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
126-181 |
2.78e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 48.67 E-value: 2.78e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 126 KLEVLNLSYNLIAKIEKV--DKLLRLRELNLSYNKISKIEG--LENMCNLQKLNLAGNEI 181
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGafKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGNRL 61
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
539-770 |
3.29e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 54.07 E-value: 3.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 539 ATDLLDSKDPKQSHMKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQQLTDGQiAANEALKKDLEGVI 618
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE-AEIEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 619 SGLQEYLGTIKGQAA--QAQNecrkLQD--EKETLLQRLTEvkQEKDELEIVAMDAENMRKELAELENALQEQHEVNASL 694
Cdd:COG3883 93 RALYRSGGSVSYLDVllGSES----FSDflDRLSALSKIAD--ADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958764994 695 QQAQGDLSAYETELETQLKLKDAETSQLKQELENLVRRTQLEQSVLQTELEKERQSLRDALGKAQSSEEKQQENSE 770
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 242
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
561-789 |
5.61e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 54.15 E-value: 5.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 561 EQQLDIMNKQyTQLEsrldeilcriATETEEIKDLEQQL-----TDGQIAANEALKKDLEGVISGLQEY---LGTIKGQA 632
Cdd:PRK11281 42 QAQLDALNKQ-KLLE----------AEDKLVQQDLEQTLalldkIDRQKEETEQLKQQLAQAPAKLRQAqaeLEALKDDN 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 633 AQAQNE------CRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENmRKELA--ELENALQEQHEVNASL---QQAQGDL 701
Cdd:PRK11281 111 DEETREtlstlsLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQT-QPERAqaALYANSQRLQQIRNLLkggKVGGKAL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 702 SAYE-TELETQLKLKDAETSQLKQELENLVRRTQLEQSVL------QTELEKERQSLRDALG--KAQSSEE--KQQENSE 770
Cdd:PRK11281 190 RPSQrVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRdyltarIQRLEHQLQLLQEAINskRLTLSEKtvQEAQSQD 269
|
250
....*....|....*....
gi 1958764994 771 LRAQLKQlqddNSLLKKQL 789
Cdd:PRK11281 270 EAARIQA----NPLVAQEL 284
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
448-921 |
5.98e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.89 E-value: 5.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 448 AAQTRLSELHHEIEAAEQKVLRAT-----------------QEFKQLEEAIR--QKKISEAEKDllLKQLSGRLRhlnKL 508
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARetrdeadevleeheerrEELETLEAEIEdlRETIAETERE--REELAEEVR---DL 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 509 RQEALDLEAQLEKQRKEIAEKHEEINSAQLATDLLDSKDPkqshmKAQKRGKEQQLDI--MNKQYTQLESRLDEILCRIA 586
Cdd:PRK02224 285 RERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDE-----ELRDRLEECRVAAqaHNEEAESLREDADDLEERAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 587 TETEEIKDLEQQLTDGQIAANEAlkkdlEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIV 666
Cdd:PRK02224 360 ELREEAAELESELEEAREAVEDR-----REEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEAT 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 667 AMDAENMRKELAEL----------------------ENALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAET--SQL 722
Cdd:PRK02224 435 LRTARERVEEAEALleagkcpecgqpvegsphvetiEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDriERL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 723 KQELENLV-----RRTQLEQSVLQ-TELEKERQSLR-DALGKAQSSEEKQQENSELRAQLKQLQDDnsllKKQLKDFQSH 795
Cdd:PRK02224 515 EERREDLEeliaeRRETIEEKRERaEELRERAAELEaEAEEKREAAAEAEEEAEEAREEVAELNSK----LAELKERIES 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 796 LNHVVDGLIHPEEVAARVDELRKRLklgagemrihspsdvlgKSLADLQKQFSEILArsqwEKEEaqvRERKLHEE---- 871
Cdd:PRK02224 591 LERIRTLLAAIADAEDEIERLREKR-----------------EALAELNDERRERLA----EKRE---RKRELEAEfdea 646
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1958764994 872 -MALQQEKLANGQEEFKQACERALEARIKFDKRQhnARIQQLENEIHYLQE 921
Cdd:PRK02224 647 rIEEAREDKERAEEYLEQVEEKLDELREERDDLQ--AEIGAVENELEELEE 695
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
514-964 |
6.03e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 53.90 E-value: 6.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 514 DLEAQLEKQRKEIAEKHEEINSAQLATDLLDSkdpkqshMKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIK 593
Cdd:TIGR00606 636 DEESDLERLKEEIEKSSKQRAMLAGATAVYSQ-------FITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAP 708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 594 DlEQQLTDGQIAANEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTE-------VKQEKDELEIV 666
Cdd:TIGR00606 709 D-KLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEqetllgtIMPEEESAKVC 787
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 667 AMDAENMRKELAELENALQEQHEVNASLQQAQGDLSAyeTELETQLKLKDAETSQLKQELENLVRRTQLEQSVLQ----- 741
Cdd:TIGR00606 788 LTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTV--QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQhlksk 865
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 742 -TELEKERQSLRDALGKAQS----SEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLNHVVDGLIHPEEVAA-RVDE 815
Cdd:TIGR00606 866 tNELKSEKLQIGTNLQRRQQfeeqLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQdKVND 945
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 816 LRKRLKLGAGEMRihSPSDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFK----QACE 891
Cdd:TIGR00606 946 IKEKVKNIHGYMK--DIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERwlqdNLTL 1023
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 892 RALEARIK--------FDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKRREDA 963
Cdd:TIGR00606 1024 RKRENELKeveeelkqHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKY 1103
|
.
gi 1958764994 964 R 964
Cdd:TIGR00606 1104 R 1104
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
258-1014 |
6.14e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.82 E-value: 6.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 258 QDRQEAFERFSLEEIERLEKDLEKKTVETEELKNKQTKFLEEIKH-QDKLNKSLKEEAMLQKQSCEELESDLNTKKELLK 336
Cdd:pfam02463 267 LAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDdEEKLKESEKEKKKAEKELKKEKEEIEELEKELKE 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 337 QKTVELTRACQKQYELEQELAFYKIDAKFeplnyypseyaeMDKSPDESPYIGKSRYKRNMFATETYIVSDAQAVQVRKM 416
Cdd:pfam02463 347 LEIKREAEEEEEEELEKLQEKLEQLEEEL------------LAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELA 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 417 vpdggQLRHEHAPRAQAPPDVQLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDLLLK 496
Cdd:pfam02463 415 -----RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELL 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 497 QLSGRLRHLNKLRQEALDLEAQLE----------------KQRKEIAEKHEEINSAQLATDLLDSKDPKQSHMKAQKRGK 560
Cdd:pfam02463 490 LSRQKLEERSQKESKARSGLKVLLalikdgvggriisahgRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRA 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 561 EQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQQLTDGQIAANEALKKDLE-GVISGLQEYLGTIKGQAAQAQNEC 639
Cdd:pfam02463 570 LTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVvEGILKDTELTKLKESAKAKESGLR 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 640 RKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKELAELENALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAET 719
Cdd:pfam02463 650 KGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQE 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 720 SQLKQELENLVRRTQLEQSVLQTELEKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDN-SLLKKQLKDFQSHLNH 798
Cdd:pfam02463 730 AQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKeEKLKAQEEELRALEEE 809
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 799 VVDGLIHPEEVAARVDELRKRLKLGAGEMRIHSPSDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQ--Q 876
Cdd:pfam02463 810 LKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDelE 889
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 877 EKLANGQEEFKQACERALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEK 956
Cdd:pfam02463 890 SKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAK 969
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958764994 957 KK--------RREDARSQEQFLGLDTELKSLKkavAASDKLAAAELTIAKEQLKSLHGTVMRINQE 1014
Cdd:pfam02463 970 EElgkvnlmaIEEFEEKEERYNKDELEKERLE---EEKKKLIRAIIEETCQRLKEFLELFVSINKG 1032
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
450-1005 |
1.03e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 53.30 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 450 QTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAE--KDLLLKQLSGRLRHL----NKLRQEALDLEAQLEKQR 523
Cdd:pfam12128 353 QSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAgiKDKLAKIREARDRQLavaeDDLQALESELREQLEAGK 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 524 KEIAEKHEE-----------INSAQLATDLLDSKDPKQSHMKAQKRGKEQQldimNKQYTQLESRLDEILCRIATETEEI 592
Cdd:pfam12128 433 LEFNEEEYRlksrlgelklrLNQATATPELLLQLENFDERIERAREEQEAA----NAEVERLQSELRQARKRRDQASEAL 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 593 KDLEQQLTDGQiAANEALKKDLEGVISGLQEYLGTikgQAAQAQNECRKLQDEK---ETLLQRLTEVKQEKDE------- 662
Cdd:pfam12128 509 RQASRRLEERQ-SALDELELQLFPQAGTLLHFLRK---EAPDWEQSIGKVISPEllhRTDLDPEVWDGSVGGElnlygvk 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 663 LEIVAMDA-------ENMRKELAELENALQEQHEVNASLQQAQGDLSAYETELetQLKLKDAETSqLKQELENLVRrtql 735
Cdd:pfam12128 585 LDLKRIDVpewaaseEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKA--SREETFARTA-LKNARLDLRR---- 657
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 736 eqsvlqteLEKERQSLRDALGKAQSSEEKQQENS--ELRAQLKQLQDDNSLLKKQLKD--------FQSHLNHVVDGL-- 803
Cdd:pfam12128 658 --------LFDEKQSEKDKKNKALAERKDSANERlnSLEAQLKQLDKKHQAWLEEQKEqkrearteKQAYWQVVEGALda 729
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 804 ---IHPEEVAARVDELRKRLKLGAGEM-RIHSPSDVLGKSLADLQKQFSEILAR-SQWEKEEAQVRE--RKLHEEMALQQ 876
Cdd:pfam12128 730 qlaLLKAAIAARRSGAKAELKALETWYkRDLASLGVDPDVIAKLKREIRTLERKiERIAVRRQEVLRyfDWYQETWLQRR 809
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 877 EKLANGQEEFKQACER------ALEARIKFDKRQHNARIQQLENEIHYLQENLKSME-KIQGLTDLQL----QEADEEKE 945
Cdd:pfam12128 810 PRLATQLSNIERAISElqqqlaRLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRcEMSKLATLKEdansEQAQGSIG 889
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958764994 946 RILAQLQELEKKKRREDARSQEQFLGLDTELKSLKKAVAAS--DKLAAAELTIAKEQLKSLH 1005
Cdd:pfam12128 890 ERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADHSGSGLAEtwESLREEDHYQNDKGIRLLD 951
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
638-1129 |
1.08e-06 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 53.22 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 638 ECRKLQDE----KETLLQRLTEVKQEKDELEIVAMDAENMRKELAELENALQEQHEVNASLQQAQgdlsayETELETQLK 713
Cdd:pfam07111 74 ELRRLEEEvrllRETSLQQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGS------QRELEEIQR 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 714 LKDAETSQLKQE----LENLVRRTQ-LEQSVLQTELEKErqslrdalGKAQSSEEKQQENSELRAQLKQLQDDnslLKKQ 788
Cdd:pfam07111 148 LHQEQLSSLTQAheeaLSSLTSKAEgLEKSLNSLETKRA--------GEAKQLAEAQKEAELLRKQLSKTQEE---LEAQ 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 789 LKDFQSHLNHVVDGLihPEEVAARVDELRKrlklgagemrihspsdvlgKSLADLQKQFSEILARSQWEKEEAQVRERKL 868
Cdd:pfam07111 217 VTLVESLRKYVGEQV--PPEVHSQTWELER-------------------QELLDTMQHLQEDRADLQATVELLQVRVQSL 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 869 HEEMALQQEKLANG-------QEEFKQACER----------ALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQG 931
Cdd:pfam07111 276 THMLALQEEELTRKiqpsdslEPEFPKKCRSllnrwrekvfALMVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQA 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 932 LTDLQLQE--ADEEKERI--------LAQLQELEKKKRREDARSQEQF-----------LGLDTELKSLKKAVAASDKLa 990
Cdd:pfam07111 356 ILQRALQDkaAEVEVERMsakglqmeLSRAQEARRRQQQQTASAEEQLkfvvnamsstqIWLETTMTRVEQAVARIPSL- 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 991 AAELTIAKEQLKSLHGTVMR---INQERAEELQEAERS-------SREAMQAAKDLSRAEAEIELLQHLLREREGQFRDE 1060
Cdd:pfam07111 435 SNRLSYAVRKVHTIKGLMARkvaLAQLRQESCPPPPPAppvdadlSLELEQLREERNRLDAELQLSAHLIQQEVGRAREQ 514
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958764994 1061 MEnahvgskganlqlLEIEALKEAMAKQRAEITRLRDVLNLTGT---GKKGGIENVVEEIAELRHAVSAQNE 1129
Cdd:pfam07111 515 GE-------------AERQQLSEVAQQLEQELQRAQESLASVGQqleVARQGQQESTEEAASLRQELTQQQE 573
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
479-790 |
1.60e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.61 E-value: 1.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 479 EAIRQKKISEAEKDLLLKQLSGRLRHLNKL---RQEALDLEAQLEKQRKEIAEKHEEINSAQlatdlldskdpkqshmKA 555
Cdd:PRK11281 46 DALNKQKLLEAEDKLVQQDLEQTLALLDKIdrqKEETEQLKQQLAQAPAKLRQAQAELEALK----------------DD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 556 QKRGKEQQLDIMNkqYTQLESRLDEILcriateteeikdleQQLTDGQIAANEAlkkdlEGVISGLQEylGTIKGQAAQA 635
Cdd:PRK11281 110 NDEETRETLSTLS--LRQLESRLAQTL--------------DQLQNAQNDLAEY-----NSQLVSLQT--QPERAQAALY 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 636 QNECRKLQdeketLLQRLTEVKQEKDELEIVAMDAENMRKELAELENALQEQH-EVNASLQ---QAQGDL-SAYETELET 710
Cdd:PRK11281 167 ANSQRLQQ-----IRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSlEGNTQLQdllQKQRDYlTARIQRLEH 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 711 QLklkdaetsQLKQELENLVRRTQLEQSVlqteleKERQSLRDAlGKAQSSEEKQQEnSELRAQL-----KQLQDDNSLL 785
Cdd:PRK11281 242 QL--------QLLQEAINSKRLTLSEKTV------QEAQSQDEA-ARIQANPLVAQE-LEINLQLsqrllKATEKLNTLT 305
|
....*
gi 1958764994 786 KKQLK 790
Cdd:PRK11281 306 QQNLR 310
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
438-789 |
1.78e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 52.65 E-value: 1.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 438 QLEDTGKQIVAAQTRLSELHHEIE-------AAEQKVLRATQEFKQLEEAIR-QKKISEAEKDLllKQLSGRLRHLNKLR 509
Cdd:COG3096 293 ELFGARRQLAEEQYRLVEMARELEelsaresDLEQDYQAASDHLNLVQTALRqQEKIERYQEDL--EELTERLEEQEEVV 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 510 QEALDLEAQLEKQRKEIAEKHEEINSaQLAtDLLDSKDPKQSHM-----------KAQKRGKEQQLDIMN--KQYTQLES 576
Cdd:COG3096 371 EEAAEQLAEAEARLEAAEEEVDSLKS-QLA-DYQQALDVQQTRAiqyqqavqaleKARALCGLPDLTPENaeDYLAAFRA 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 577 RLDEIlcriateTEEIKDLEQQLTDGQIAANEaLKKDLEGVISGLQEylgTIKGQAAQAQNECRKLQDEKETLLQRLTEV 656
Cdd:COG3096 449 KEQQA-------TEEVLELEQKLSVADAARRQ-FEKAYELVCKIAGE---VERSQAWQTARELLRRYRSQQALAQRLQQL 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 657 KQEKDELEIVAMDAENMRKELAELENALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELENL-VRRTQL 735
Cdd:COG3096 518 RAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLrARIKEL 597
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958764994 736 EQS-----VLQTELEKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQL 789
Cdd:COG3096 598 AARapawlAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAARKQAL 656
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
85-235 |
1.85e-06 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 51.71 E-value: 1.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 85 EALIKKLTKQDNlalVKSLNLSLSKDGGKKFRYI-ENLEKCVKLEVLNLSYNLI------AKIEKVDKLLRLRELNLSYN 157
Cdd:COG5238 254 IALAEALKNNTT---VETLYLSGNQIGAEGAIALaKALQGNTTLTSLDLSVNRIgdegaiALAEGLQGNKTLHTLNLAYN 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 158 KISK------IEGLENMCNLQKLNLAGNEI---------EHIPGWfskklKSLRVLNLKGNKISSLQDVSKLKPLQ--DL 220
Cdd:COG5238 331 GIGAqgaialAKALQENTTLHSLDLSDNQIgdegaialaKYLEGN-----TTLRELNLGKNNIGKQGAEALIDALQtnRL 405
|
170
....*....|....*
gi 1958764994 221 TSLTLIDNPVVALPH 235
Cdd:COG5238 406 HTLILDGNLIGAEAQ 420
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
436-698 |
1.88e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.33 E-value: 1.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 436 DVQLEDTGKQIVAAQTRLSELHHEIEAAEQKVlratQEFKQLEEAIRqkkiSEAEKDLLLKQLSGRLRHLNKLRQEALDL 515
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAAL----EEFRQKNGLVD----LSEEAKLLLQQLSELESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 516 EAQLEKQRKEIAekheeiNSAQLATDLLDSkdpkqshmkaqkrgkeQQLDIMNKQYTQLESRLDEILCRIATETEEIKDL 595
Cdd:COG3206 239 EARLAALRAQLG------SGPDALPELLQS----------------PVIQQLRAQLAELEAELAELSARYTPNHPDVIAL 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 596 EQQLtdgqiaanEALKKDLEgviSGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRK 675
Cdd:COG3206 297 RAQI--------AALRAQLQ---QEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARE 365
|
250 260
....*....|....*....|...
gi 1958764994 676 ELAELENALQEqhevnASLQQAQ 698
Cdd:COG3206 366 LYESLLQRLEE-----ARLAEAL 383
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
244-913 |
2.09e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.43 E-value: 2.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 244 LRSLES----LEGQPVTTQDRQEAFERFSLEEIE--------RLEKDLEKKTVETEELKNKQTKFLEEIKHQDKLNKSLK 311
Cdd:pfam15921 226 LRELDTeisyLKGRIFPVEDQLEALKSESQNKIElllqqhqdRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 312 EEAMLQKQSCEELESDLNTKKELLKQKTVELTRACQ-KQYELEQELAFYKidakfeplnyypSEYAEmdkspdespyigk 390
Cdd:pfam15921 306 EQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEdKIEELEKQLVLAN------------SELTE------------- 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 391 SRYKRNMFATETYIVSDaqavQVRKMVPDGGQLRHEHAPRAQAPPDVQLEDTGKQIVaaqtrLSELHHEIEAAEQKVlra 470
Cdd:pfam15921 361 ARTERDQFSQESGNLDD----QLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSIT-----IDHLRRELDDRNMEV--- 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 471 tQEFKQLEEAIRQKKISEAEKDLLLKQlsGRLRHLNKLRQealdLEAQLEKQRKEIAEKHEEINSAQLAtdlLDSKDPKQ 550
Cdd:pfam15921 429 -QRLEALLKAMKSECQGQMERQMAAIQ--GKNESLEKVSS----LTAQLESTKEMLRKVVEELTAKKMT---LESSERTV 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 551 SHMKAQKRGKEQQLDIMNKQYTQLESRLDEILcriaTETEEIKDLEQQLTDGQiAANEALKKDLEG---VISGLQEYLGT 627
Cdd:pfam15921 499 SDLTASLQEKERAIEATNAEITKLRSRVDLKL----QELQHLKNEGDHLRNVQ-TECEALKLQMAEkdkVIEILRQQIEN 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 628 IKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKEL----AELEnaLQEQHEVNASLQQAQGdlsa 703
Cdd:pfam15921 574 MTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELearvSDLE--LEKVKLVNAGSERLRA---- 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 704 yeteletqlkLKDAEtsQLKQELENLVRRTQLEQSVLQTELEKERQSLRDalgkaqSSEEKQQENSELRAQLKQLQDDNS 783
Cdd:pfam15921 648 ----------VKDIK--QERDQLLNEVKTSRNELNSLSEDYEVLKRNFRN------KSEEMETTTNKLKMQLKSAQSELE 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 784 LLKKQLKDFQSHLNHVVD-GLIHPEEVAAR---VDELRKRLKLGAGEM-RIHSPSDVLGKSLADLQKQFSEILARSQWEK 858
Cdd:pfam15921 710 QTRNTLKSMEGSDGHAMKvAMGMQKQITAKrgqIDALQSKIQFLEEAMtNANKEKHFLKEEKNKLSQELSTVATEKNKMA 789
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958764994 859 EEAQV---RERKLHEEMALQQEKLANGQEEFKQA---CERALEARIKFdKRQHNARIQQLE 913
Cdd:pfam15921 790 GELEVlrsQERRLKEKVANMEVALDKASLQFAECqdiIQRQEQESVRL-KLQHTLDVKELQ 849
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
473-667 |
2.17e-06 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 51.94 E-value: 2.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 473 EFKQLEEAIRQKkISEAEKDL--LLKQLSGRLRHLNKLRQEALDLEAQLEKQRKEIaEKHEEINSAQLATDLLDSKDPKQ 550
Cdd:PHA02562 224 ELVEEAKTIKAE-IEELTDELlnLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVI-KMYEKGGVCPTCTQQISEGPDRI 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 551 SHMKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQQltDGQIAANEALKKDLEGVISGLQEYLGTIKG 630
Cdd:PHA02562 302 TKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTN--KQSLITLVDKAKKVKAAIEELQAEFVDNAE 379
|
170 180 190
....*....|....*....|....*....|....*..
gi 1958764994 631 qaaqaqnECRKLQDEKETLLQRLTEVKQEKDELEIVA 667
Cdd:PHA02562 380 -------ELAKLQDELDKIVKTKSELVKEKYHRGIVT 409
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
645-1044 |
2.31e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 2.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 645 EKETLLQRLTEVKQEKDELEIVAMDAENMRKELAELENALQEQHEVNASLQQAQGDLSAYETE-LETQLKLKDAETSQLK 723
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEaLERQKEAIERQLASLE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 724 QELENLVRRTQleqsvlqtELEKErqslrdalgkaqsSEEKQQENSELRAQLKQLQDDNSL-LKKQLKDFQSHLNHVVDG 802
Cdd:TIGR02169 251 EELEKLTEEIS--------ELEKR-------------LEEIEQLLEELNKKIKDLGEEEQLrVKEKIGELEAEIASLERS 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 803 LihpEEVAARVDELRKRLKlgagemrihspsdvlgKSLADLQKQFSEIlARSQWEKEEAQVRERKLHEEMALQQEKLANG 882
Cdd:TIGR02169 310 I---AEKERELEDAEERLA----------------KLEAEIDKLLAEI-EELEREIEEERKRRDKLTEEYAELKEELEDL 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 883 QEEFKQACERALEARIKFDKRQHnaRIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKRRED 962
Cdd:TIGR02169 370 RAELEEVDKEFAETRDELKDYRE--KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 963 ARSQEQflglDTELKSLKKAVAAsdklaaaeltiAKEQLKSLHGTVMRINQER---AEELQEAERSSREAMQAAKDLSRA 1039
Cdd:TIGR02169 448 LEIKKQ----EWKLEQLAADLSK-----------YEQELYDLKEEYDRVEKELsklQRELAEAEAQARASEERVRGGRAV 512
|
....*
gi 1958764994 1040 EAEIE 1044
Cdd:TIGR02169 513 EEVLK 517
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
754-992 |
2.78e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 2.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 754 ALGKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLnhvvdglihpEEVAARVDELRKRLKLGAGEMRihsps 833
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL----------AALERRIAALARRIRALEQELA----- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 834 dVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFKQACERA--LEARIKFDK------RQH 905
Cdd:COG4942 80 -ALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLqyLKYLAPARReqaeelRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 906 NARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKRREDARSQEQFLGLDTELKSLKKAVAA 985
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*..
gi 1958764994 986 SDKLAAA 992
Cdd:COG4942 239 AAERTPA 245
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
148-187 |
3.10e-06 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 44.93 E-value: 3.10e-06
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1958764994 148 RLRELNLSYNKISKIEGLENMCNLQKLNLAGN-EIEHIPGW 187
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGNnKITDLSDL 42
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
607-817 |
3.21e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 3.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 607 NEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKEtLLQRLTEVKQEKDELEIVAMDAENMRKELAELEN---- 682
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERRE-ALQRLAEYSWDEIDVASAEREIAELEAELERLDAssdd 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 683 --ALQEQHE-VNASLQQAQGDLSAYETEL-ETQLKLKDAETsQLKQELENLVRRTQLEQSVLQTELEKERQSLRDALGKA 758
Cdd:COG4913 687 laALEEQLEeLEAELEELEEELDELKGEIgRLEKELEQAEE-ELDELQDRLEAAEDLARLELRALLEERFAAALGDAVER 765
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 759 QSSEEKQQENSELRAQLKQLQDD-NSLLKKQLKDFQSHLNHVVDGLIHPEEVAARVDELR 817
Cdd:COG4913 766 ELRENLEERIDALRARLNRAEEElERAMRAFNREWPAETADLDADLESLPEYLALLDRLE 825
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
438-599 |
4.86e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 4.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 438 QLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKK------------ISEAEKDLLL------KQLS 499
Cdd:COG4942 56 QLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKeelaellralyrLGRQPPLALLlspedfLDAV 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 500 GRLRHLNKLRQEALDLEAQLEKQRKEIAEKHEEINSAQLATD-LLDSKDPKQSHMKAQKRGKEQQLDIMNKQYTQLESRL 578
Cdd:COG4942 136 RRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEaLLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
170 180
....*....|....*....|.
gi 1958764994 579 DEILCRIATETEEIKDLEQQL 599
Cdd:COG4942 216 AELQQEAEELEALIARLEAEA 236
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
427-671 |
5.34e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.21 E-value: 5.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 427 HAPRAQAPPDVQLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIR--QKKISEAEKDL--LLKQLSGRL 502
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDklQAEIAEAEAEIeeRREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 503 RHLNKLRQEALDLEAqlekqrkeiaekheeinsaqlatdLLDSKDPKQ--SHMKAQKRGKEQQLDIMNkQYTQLESRLDE 580
Cdd:COG3883 93 RALYRSGGSVSYLDV------------------------LLGSESFSDflDRLSALSKIADADADLLE-ELKADKAELEA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 581 ILCRIATETEEIKDLEQQLtdgqiaanEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEK 660
Cdd:COG3883 148 KKAELEAKLAELEALKAEL--------EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAA 219
|
250
....*....|.
gi 1958764994 661 DELEIVAMDAE 671
Cdd:COG3883 220 AAAAAAAAAAA 230
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
49-238 |
5.46e-06 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 50.17 E-value: 5.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 49 GGQCPAQAELTDENTMPLESQQHKGADPYVGVRYI----TEALIKKLTKQDNLALVKSLNLSLSKDGGKKFryIENLEKC 124
Cdd:COG5238 158 LLGLAARLGLLAAISMAKALQNNSVETVYLGCNQIgdegIEELAEALTQNTTVTTLWLKRNPIGDEGAEIL--AEALKGN 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 125 VKLEVLNLSYN------LIAKIEKVDKLLRLRELNLSYNKISK------IEGLENMCNLQKLNLAGNEIEHiPGWFS--- 189
Cdd:COG5238 236 KSLTTLDLSNNqigdegVIALAEALKNNTTVETLYLSGNQIGAegaialAKALQGNTTLTSLDLSVNRIGD-EGAIAlae 314
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958764994 190 --KKLKSLRVLNLKGNKISSLQDVSKLKPLQD---LTSLTLIDNP-----VVALPHYLQ 238
Cdd:COG5238 315 glQGNKTLHTLNLAYNGIGAQGAIALAKALQEnttLHSLDLSDNQigdegAIALAKYLE 373
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
502-895 |
5.83e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 50.73 E-value: 5.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 502 LRHLNKLR---QEALDLEAQLEKQRKEIA---EKHEEI---------NSAQLATDLLDSKDPKQSHMKA---QKRGKEQQ 563
Cdd:PRK04863 275 MRHANERRvhlEEALELRRELYTSRRQLAaeqYRLVEMarelaelneAESDLEQDYQAASDHLNLVQTAlrqQEKIERYQ 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 564 LDImnkqyTQLESRLDEILCRIATETEEIKDLEQQLTdgqiaANEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQ 643
Cdd:PRK04863 355 ADL-----EELEERLEEQNEVVEEADEQQEENEARAE-----AAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 644 DEKETLLQRLTEVKQEKDELEIVAMDAENMRKELAELENALQ------EQHEVNASL-QQAQGDLSAYE-----TELETQ 711
Cdd:PRK04863 425 RAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSvaqaahSQFEQAYQLvRKIAGEVSRSEawdvaRELLRR 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 712 L---KLKDAETSQLKQELENLVRRTQLEQSVlqtelekeRQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQ 788
Cdd:PRK04863 505 LreqRHLAEQLQQLRMRLSELEQRLRQQQRA--------ERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSE 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 789 LKDFQSHLNHvvdgliHPEEVAARVDELRKRlklgAGEMRIHSPsdvlgkSLADLQKQFSEILARSQwekEEAQVRERKL 868
Cdd:PRK04863 577 ARERRMALRQ------QLEQLQARIQRLAAR----APAWLAAQD------ALARLREQSGEEFEDSQ---DVTEYMQQLL 637
|
410 420
....*....|....*....|....*..
gi 1958764994 869 HEEMALQQEKlaNGQEEFKQACERALE 895
Cdd:PRK04863 638 ERERELTVER--DELAARKQALDEEIE 662
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
126-167 |
6.55e-06 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 44.16 E-value: 6.55e-06
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1958764994 126 KLEVLNLSYNLIAKIEKVDKLLRLRELNLSYN-KISKIEGLEN 167
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGNnKITDLSDLAN 44
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
667-1084 |
9.15e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.34 E-value: 9.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 667 AMDAENMRKELAELENALQEQHEVNASLQQAQGDLSAyetELEtqlKLKDAEtSQLKQELENLVRRTQLEQSVL--QTEL 744
Cdd:COG3096 277 ANERRELSERALELRRELFGARRQLAEEQYRLVEMAR---ELE---ELSARE-SDLEQDYQAASDHLNLVQTALrqQEKI 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 745 EKERQSLRDALGKA----QSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLNHVVDGLIHPEEVAARVDELRKRl 820
Cdd:COG3096 350 ERYQEDLEELTERLeeqeEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARAL- 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 821 kLGAGEMRIHSPSDVLGKSLADLQKQFSEIL-ARSQWEKEEAQVRErklHEEmALQQEKLANGQEEFKQACERALEARIK 899
Cdd:COG3096 429 -CGLPDLTPENAEDYLAAFRAKEQQATEEVLeLEQKLSVADAARRQ---FEK-AYELVCKIAGEVERSQAWQTARELLRR 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 900 FDKRQHNA-RIQQLENEIHYLQENLKSMEKIQGL-TDLQLQ-----EADEEKERILAQLQELEKKKRREDARSQEQFLGL 972
Cdd:COG3096 504 YRSQQALAqRLQQLRAQLAELEQRLRQQQNAERLlEEFCQRigqqlDAAEELEELLAELEAQLEELEEQAAEAVEQRSEL 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 973 DTELKSLKKAVAASDKLAAAELTiAKEQLKSLhgtvmrinqerAEELQEAERSSREAMQAAKDLSRAEAEIELLQHLLRE 1052
Cdd:COG3096 584 RQQLEQLRARIKELAARAPAWLA-AQDALERL-----------REQSGEALADSQEVTAAMQQLLEREREATVERDELAA 651
|
410 420 430
....*....|....*....|....*....|..
gi 1958764994 1053 REGQFRDEMENAHVGSKGANLQLLeieALKEA 1084
Cdd:COG3096 652 RKQALESQIERLSQPGGAEDPRLL---ALAER 680
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
653-788 |
1.13e-05 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 48.60 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 653 LTEVKQEKD----ELEIVAMDAENMRKELAELENalQEQHEVNASLQQaqgdLSAYETELETQLKLK---DAETSQLKQE 725
Cdd:pfam09787 49 LEELRQERDllreEIQKLRGQIQQLRTELQELEA--QQQEEAESSREQ----LQELEEQLATERSARreaEAELERLQEE 122
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958764994 726 LENLVRRTQLEQSVLQT---ELEKERQSLRDALGKAQSSEEKQqenSELRAQLKQLQDdnSLLKKQ 788
Cdd:pfam09787 123 LRYLEEELRRSKATLQSrikDREAEIEKLRNQLTSKSQSSSSQ---SELENRLHQLTE--TLIQKQ 183
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
506-916 |
1.20e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 49.67 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 506 NKLRQEALDLEAQLEKQRKEIAEkheeinSAQLATDLLDskDPKQShmkaQKRGKEQQLDIMNkqYTQLESRLDEilcRI 585
Cdd:PRK10929 26 KQITQELEQAKAAKTPAQAEIVE------ALQSALNWLE--ERKGS----LERAKQYQQVIDN--FPKLSAELRQ---QL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 586 ATETEEIKDLEQQLTdgqiaaNEALKKDLEGVISGLQEylgtIKGQAAQAQNECRKLQDEKETLLQRLTEVkqekdelei 665
Cdd:PRK10929 89 NNERDEPRSVPPNMS------TDALEQEILQVSSQLLE----KSRQAQQEQDRAREISDSLSQLPQQQTEA--------- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 666 vamdaenmRKELAELENALQEQHEVNASLQQAQgdLSAYETELETQ-LKLKDAETSQL----KQELENLvrRTQLEQSVL 740
Cdd:PRK10929 150 --------RRQLNEIERRLQTLGTPNTPLAQAQ--LTALQAESAALkALVDELELAQLsannRQELARL--RSELAKKRS 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 741 QtELEKERQSLRDALG-KAQSSEEKQQENSELRAqlKQLQDDNSLLKKQLK---DFQSHLNHVVD--GLIHPEEVAARVD 814
Cdd:PRK10929 218 Q-QLDAYLQALRNQLNsQRQREAERALESTELLA--EQSGDLPKSIVAQFKinrELSQALNQQAQrmDLIASQQRQAASQ 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 815 ELRKRLKLGAgeMRIHSP----SDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLH-EEMALQQEKLA----NGQEE 885
Cdd:PRK10929 295 TLQVRQALNT--LREQSQwlgvSNALGEALRAQVARLPEMPKPQQLDTEMAQLRVQRLRyEDLLNKQPQLRqirqADGQP 372
|
410 420 430
....*....|....*....|....*....|.
gi 1958764994 886 FKQACERALEARIKFDKRQHNARIQQLENEI 916
Cdd:PRK10929 373 LTAEQNRILDAQLRTQRELLNSLLSGGDTLI 403
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
590-794 |
1.26e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.63 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 590 EEIKDLEQQLTDGQIAANEALKKD-LEGVISGLQEYLGTIKGQAAQAQNECRK---------LQDEKETLLQRLTEVKQE 659
Cdd:COG3206 148 ELAAAVANALAEAYLEQNLELRREeARKALEFLEEQLPELRKELEEAEAALEEfrqknglvdLSEEAKLLLQQLSELESQ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 660 KDELEIVAMDAEN----MRKELAELENALQE--QHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELENLVRRT 733
Cdd:COG3206 228 LAEARAELAEAEArlaaLRAQLGSGPDALPEllQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQL 307
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958764994 734 QLEQSVLQTELEKERQSLRDALGKAQSSEEKQQEN----SELRAQLKQLQDDNSLLKKQLKDFQS 794
Cdd:COG3206 308 QQEAQRILASLEAELEALQAREASLQAQLAQLEARlaelPELEAELRRLEREVEVARELYESLLQ 372
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
269-969 |
2.14e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 2.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 269 LEEIERLEKDLEKKTVETEELKNKQTKFLEEIKHQDKLNKSLKEEAMLQKQSCEELESDLNTKKELLKQKTVELTRACQK 348
Cdd:TIGR00618 169 LMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQK 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 349 QYELEQELAFYK----IDAKFEPLNYYPSEYAEMDKSPDESPYIGK-SRYKRNMFATETYIVSDAQAVQVRKMvpDGGQL 423
Cdd:TIGR00618 249 REAQEEQLKKQQllkqLRARIEELRAQEAVLEETQERINRARKAAPlAAHIKAVTQIEQQAQRIHTELQSKMR--SRAKL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 424 RHEHAPRAQAPPDVQLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDLLLKQLSGRLR 503
Cdd:TIGR00618 327 LMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQ 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 504 HLNKlRQEALDLEAQLEKQRKEIAEKHEEINSAQLA---------TDLLDSKDPKQSHMKAQKRGKEQQLDIMnKQYTQL 574
Cdd:TIGR00618 407 REQA-TIDTRTSAFRDLQGQLAHAKKQQELQQRYAElcaaaitctAQCEKLEKIHLQESAQSLKEREQQLQTK-EQIHLQ 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 575 ESRLDEILCRIATETEE--------IKDLEQQLTD-GQIAANEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDE 645
Cdd:TIGR00618 485 ETRKKAVVLARLLELQEepcplcgsCIHPNPARQDiDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQ 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 646 KETLLQRLTEVKQEKDEleiVAMDAENMRKELAELENALQEQHEVNASLQQAQgdlsaYETELETQLKLKDAETSQLKQE 725
Cdd:TIGR00618 565 MQEIQQSFSILTQCDNR---SKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQ-----HALLRKLQPEQDLQDVRLHLQQ 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 726 LENLVRRTQLEQSVLQTELEKERQ---SLRDALGKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLNHVVDG 802
Cdd:TIGR00618 637 CSQELALKLTALHALQLTLTQERVrehALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEY 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 803 LIHPEEVAarvdelrkrLKLGAGEMRIHSPSDVLGKSLADLQKQFSEILARSqwEKEEAQVRERKLHEEMALQQEKLANG 882
Cdd:TIGR00618 717 DREFNEIE---------NASSSLGSDLAAREDALNQSLKELMHQARTVLKAR--TEAHFNNNEEVTAALQTGAELSHLAA 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 883 QEEFKQACERALEARIKFDKRQHNARIQqleneiHYLQENLKSMEKIQG---LTDLQLQEADEEKERILAQLQELEKKKR 959
Cdd:TIGR00618 786 EIQFFNRLREEDTHLLKTLEAEIGQEIP------SDEDILNLQCETLVQeeeQFLSRLEEKSATLGEITHQLLKYEECSK 859
|
730
....*....|
gi 1958764994 960 REDARSQEQF 969
Cdd:TIGR00618 860 QLAQLTQEQA 869
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
507-1106 |
3.51e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 48.25 E-value: 3.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 507 KLRQEALDLEAQLEkqrkeiaEKHEEINSAQLATDLLDSKDPKqshMKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIA 586
Cdd:pfam01576 100 KMQQHIQDLEEQLD-------EEEAARQKLQLEKVTTEAKIKK---LEEDILLLEDQNSKLSKERKLLEERISEFTSNLA 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 587 TETEEIKDL-------EQQLTDGQIAAN---------EALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLL 650
Cdd:pfam01576 170 EEEEKAKSLsklknkhEAMISDLEERLKkeekgrqelEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAAL 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 651 QRLTEVKQEKDELEIVAMDAENMRKELAE-LENALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAET---SQLKQEL 726
Cdd:pfam01576 250 ARLEEETAQKNNALKKIRELEAQISELQEdLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQelrSKREQEV 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 727 ENLVRRTQLEQSVLQTELEKERQSLRDAL----------GKAQSSEEK-----QQENSELRAQLKQLQDDNS-------L 784
Cdd:pfam01576 330 TELKKALEEETRSHEAQLQEMRQKHTQALeelteqleqaKRNKANLEKakqalESENAELQAELRTLQQAKQdsehkrkK 409
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 785 LKKQLKDFQSHLNhvvDGLIHPEEVAARVDELRKRLKLGAGEM-RIHSPSDVLGKSLADLQKQF---SEILARSQWEKEE 860
Cdd:pfam01576 410 LEGQLQELQARLS---ESERQRAELAEKLSKLQSELESVSSLLnEAEGKNIKLSKDVSSLESQLqdtQELLQEETRQKLN 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 861 AQVRERKLHEEMALQQEKLANgQEEFKQACERALEArikfdkrqHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEA 940
Cdd:pfam01576 487 LSTRLRQLEDERNSLQEQLEE-EEEAKRNVERQLST--------LQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEAL 557
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 941 DEEKERILAQLQELEKKKRREDARSQEQFLGLDTE---LKSLKKAVAASDKLAAAELTIAkeqlkslhgtvmrinQERAE 1017
Cdd:pfam01576 558 TQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQrqlVSNLEKKQKKFDQMLAEEKAIS---------------ARYAE 622
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 1018 ELQEAERSSREAMQAAKDLSRAEAEIELLQHLLREREGQFRDEMENAhVGSK---GANLQLLE--IEALKEAMAKQRAEI 1092
Cdd:pfam01576 623 ERDRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDL-VSSKddvGKNVHELErsKRALEQQVEEMKTQL 701
|
650
....*....|....
gi 1958764994 1093 TRLRDVLNLTGTGK 1106
Cdd:pfam01576 702 EELEDELQATEDAK 715
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
452-797 |
6.56e-05 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 47.14 E-value: 6.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 452 RLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDLLLKQLSGRLRhlnKLRQEAL-------DLEAQLEKQRK 524
Cdd:PRK04778 99 RFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYR---ELRKSLLanrfsfgPALDELEKQLE 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 525 EIAEKHEEinsaqlATDLLDSKDPKQSHMkaqkrgkeqQLDIMNKQYTQLESRLdeilcriatetEEIKDLEQQLTDgqi 604
Cdd:PRK04778 176 NLEEEFSQ------FVELTESGDYVEARE---------ILDQLEEELAALEQIM-----------EEIPELLKELQT--- 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 605 aanealkkdlegvisglqeylgTIKGQAAQAQNECRKLQDEK-----ETLLQRLTEVKQEKDELE--IVAMDAENMRKEL 677
Cdd:PRK04778 227 ----------------------ELPDQLQELKAGYRELVEEGyhldhLDIEKEIQDLKEQIDENLalLEELDLDEAEEKN 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 678 AELENALQE-----QHEVNA--SLQQAQGDLSAYETELETQLKlkdaetsQLKQELENLVRRTQLEQSVLQT--ELEKER 748
Cdd:PRK04778 285 EEIQERIDQlydilEREVKArkYVEKNSDTLPDFLEHAKEQNK-------ELKEEIDRVKQSYTLNESELESvrQLEKQL 357
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1958764994 749 QSLRDALGK-AQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLN 797
Cdd:PRK04778 358 ESLEKQYDEiTERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQ 407
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
438-537 |
7.95e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.69 E-value: 7.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 438 QLEDTGKQIV-AAQTRLSELHHEIEA-AEQKVLRATQEFKQlEEAIRQKKISEAEKDLLLK--QLSGRLRHLNKLRQEAL 513
Cdd:PRK12704 35 EAEEEAKRILeEAKKEAEAIKKEALLeAKEEIHKLRNEFEK-ELRERRNELQKLEKRLLQKeeNLDRKLELLEKREEELE 113
|
90 100
....*....|....*....|....
gi 1958764994 514 DLEAQLEKQRKEIAEKHEEINSAQ 537
Cdd:PRK12704 114 KKEKELEQKQQELEKKEEELEELI 137
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
670-909 |
7.99e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 7.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 670 AENMRKELAELENA---LQEQ-HEVNASLQQAQGDLSAYETE-----LETQLKLKDAETSQLKQELENLvrRTQLEqsvl 740
Cdd:COG3206 163 EQNLELRREEARKAlefLEEQlPELRKELEEAEAALEEFRQKnglvdLSEEAKLLLQQLSELESQLAEA--RAELA---- 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 741 qtELEKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHlnhvvdgliHPEEVAAR--VDELRK 818
Cdd:COG3206 237 --EAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPN---------HPDVIALRaqIAALRA 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 819 RLKLGAGEMRIHSPSDV--LGKSLADLQKQFSEILARSQwekeEAQVRERKLHEemaLQQEkLANGQEEFKQACERALEA 896
Cdd:COG3206 306 QLQQEAQRILASLEAELeaLQAREASLQAQLAQLEARLA----ELPELEAELRR---LERE-VEVARELYESLLQRLEEA 377
|
250
....*....|...
gi 1958764994 897 RIKFDKRQHNARI 909
Cdd:COG3206 378 RLAEALTVGNVRV 390
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
720-1126 |
9.42e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 9.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 720 SQLKQELENLVRRTQLEQSVLQTELEKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNSLLK------KQLKDFQ 793
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELReeleklEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 794 SHLNHVVDGLIHPEEVAARVDELRKRLK-LGAGEMRIhspsDVLGKSLADLQKQFSEILARSQWEKEEaqvRERKLHEEM 872
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEERLEeLRELEEEL----EELEAELAELQEELEELLEQLSLATEE---ELQDLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 873 ALQQEKLANGQEEFKQACERALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKER------ 946
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIagvlfl 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 947 ------ILAQLQELEKKKRREDARSQEQFLGL----DTELKSLKKAVAASDKLAAAELTIAKEQLKSLHGTVMRINQERA 1016
Cdd:COG4717 282 vlgllaLLFLLLAREKASLGKEAEELQALPALeeleEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 1017 EELQEAERSSREAMQAAKDLSRAEAEIELLQHL-----LREREGQFRDEMENaHVGSKGANLQLLEIEALKEAMAKQRAE 1091
Cdd:COG4717 362 ELQLEELEQEIAALLAEAGVEDEEELRAALEQAeeyqeLKEELEELEEQLEE-LLGELEELLEALDEEELEEELEELEEE 440
|
410 420 430
....*....|....*....|....*....|....*
gi 1958764994 1092 ITRLRDvlnltgtgkkgGIENVVEEIAELRHAVSA 1126
Cdd:COG4717 441 LEELEE-----------ELEELREELAELEAELEQ 464
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
267-535 |
1.36e-04 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 46.19 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 267 FSLEEIERLEKDLEKKTVETEELKNKQT---------KFLEEIKHQDK--LNKSLKEEAM----------LQKQSCEELE 325
Cdd:PTZ00108 1099 LTKEKVEKLNAELEKKEKELEKLKNTTPkdmwledldKFEEALEEQEEveEKEIAKEQRLksktkgkaskLRKPKLKKKE 1178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 326 SDLNTKKELLKQKTVELTRACQKQYELEQELAFYKIDAKFEPLNYYPSEYAEMDKSPDESPYIGKSRYKRNMFATETYIV 405
Cdd:PTZ00108 1179 KKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDND 1258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 406 SDAQAVQVRKMVPDGGQLRhEHAPRAQAPPDVQLEDTGKQIVAAQTRlselhhEIEAAEQKVLRATQEFKQLEE-----A 480
Cdd:PTZ00108 1259 EFSSDDLSKEGKPKNAPKR-VSAVQYSPPPPSKRPDGESNGGSKPSS------PTKKKVKKRLEGSLAALKKKKksekkT 1331
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1958764994 481 IRQKKISEAEKDLLLKQLSGRLRHLNKLRQEALDLEAQLEKQRKEIAEKHEEINS 535
Cdd:PTZ00108 1332 ARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDED 1386
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
438-1052 |
1.36e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.19 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 438 QLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDLLlkQLSGRLRHLNKLRQEALDLEA 517
Cdd:TIGR00606 266 KLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELV--DCQRELEKLNKERRLLNQEKT 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 518 QLEKQRKEIAEKHEEINSAQLATDLLDSKDPKQSHMKAQKRGKEQQLDIMNKQYTQLESRLDEilcrIATETEEIKDLEQ 597
Cdd:TIGR00606 344 ELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDE----AKTAAQLCADLQS 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 598 QLTDGQIAANEALKKdlegvisglqeylgtIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKEL 677
Cdd:TIGR00606 420 KERLKQEQADEIRDE---------------KKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAE 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 678 AEL----ENALQEQHEVNA-SLQQAQGDLSAYETELETQLKLKDAETSQLKQeLENLVRRTQLEQSVLQTELEKERQSLR 752
Cdd:TIGR00606 485 RELskaeKNSLTETLKKEVkSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQ-MEMLTKDKMDKDEQIRKIKSRHSDELT 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 753 DALGKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLNHVVDGLIHPEE-----------------VAARVDE 815
Cdd:TIGR00606 564 SLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEqlssyedklfdvcgsqdEESDLER 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 816 LRKRLKLGAGEMRIHSPSDVLGKS----LADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFKQACE 891
Cdd:TIGR00606 644 LKEEIEKSSKQRAMLAGATAVYSQfitqLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEK 723
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 892 RALEARIKFDKRQhnARIQQLENEIHYLQENLKSMEkiqglTDLQLQEAD-EEKERILAQLQELEK--KKRREDARSQEQ 968
Cdd:TIGR00606 724 RRDEMLGLAPGRQ--SIIDLKEKEIPELRNKLQKVN-----RDIQRLKNDiEEQETLLGTIMPEEEsaKVCLTDVTIMER 796
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 969 FlglDTELKSLKKAVAAsdklaaaelTIAKEQLKSLHGTVMRINQERAEELQEAERSSREAMQAAKDLSRAEAEIELLQH 1048
Cdd:TIGR00606 797 F---QMELKDVERKIAQ---------QAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKS 864
|
....
gi 1958764994 1049 LLRE 1052
Cdd:TIGR00606 865 KTNE 868
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
842-1064 |
1.57e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 842 DLQKQFSEIL-ARSQWEKEEAQV-----------RERKLHEEMALQQEKLANGQEEFKQACERALEARIkfdkRQHNARI 909
Cdd:COG4913 229 ALVEHFDDLErAHEALEDAREQIellepirelaeRYAAARERLAELEYLRAALRLWFAQRRLELLEAEL----EELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 910 QQLENEIHYLQENLKSM-EKIQGLTDLQLQEADEEKERILAQLQELEKKK-RREDARSQ--EQFLGLDTELKSLKKAVAA 985
Cdd:COG4913 305 ARLEAELERLEARLDALrEELDELEAQIRGNGGDRLEQLEREIERLERELeERERRRARleALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 986 SDKLAAAELTIAKEQLKSLHgtvmrinqeraEELQEAERSSREAMQAAKDLsraEAEIELLQH---LLREREGQFRDEME 1062
Cdd:COG4913 385 LRAEAAALLEALEEELEALE-----------EALAEAEAALRDLRRELREL---EAEIASLERrksNIPARLLALRDALA 450
|
..
gi 1958764994 1063 NA 1064
Cdd:COG4913 451 EA 452
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
560-988 |
1.61e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.94 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 560 KEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQQLTDGQIAANEA---------LKKDLEGVISGLQEYLGTIKG 630
Cdd:pfam01576 10 KEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAeemrarlaaRKQELEEILHELESRLEEEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 631 QAAQAQNECRKLQ----------DEKETLLQRL------TEVKQEKDELEIVAMDAEN---------MRKELAELENALQ 685
Cdd:pfam01576 90 RSQQLQNEKKKMQqhiqdleeqlDEEEAARQKLqlekvtTEAKIKKLEEDILLLEDQNsklskerklLEERISEFTSNLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 686 EQHEVNASLQQAQGDLSAYETELETQLKlkdaETSQLKQELENLVRRTQLEQSVLQTELEKERQSLRDALGKAQSSEEKQ 765
Cdd:pfam01576 170 EEEEKAKSLSKLKNKHEAMISDLEERLK----KEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEEL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 766 QensELRAQLKQLQDDNSLLKKQLKDFQSHLNHVVDGLihPEEVAARVDELRKRLKLGagemrihSPSDVLGKSLAD-LQ 844
Cdd:pfam01576 246 Q---AALARLEEETAQKNNALKKIRELEAQISELQEDL--ESERAARNKAEKQRRDLG-------EELEALKTELEDtLD 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 845 KQFSEILARSQWEKEEAQVR-----ERKLHE-EMALQQEKLANGQEEFKQACERALEARIKFDKRQhnariQQLENEIHY 918
Cdd:pfam01576 314 TTAAQQELRSKREQEVTELKkaleeETRSHEaQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAK-----QALESENAE 388
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958764994 919 LQENLKSMEKIQgltdlqlQEADEEKERILAQLQELEKK---KRREDARSQEQFLGLDTELKSLKKAVAASDK 988
Cdd:pfam01576 389 LQAELRTLQQAK-------QDSEHKRKKLEGQLQELQARlseSERQRAELAEKLSKLQSELESVSSLLNEAEG 454
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
651-1056 |
1.68e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.94 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 651 QRLTEVKQEKDELEIVAMDAENMRKELAELENALQEQhevnaslQQAQGDLSAYETELETQLKLKDAETSQLKQELENLV 730
Cdd:pfam01576 12 EELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQ-------LQAETELCAEAEEMRARLAARKQELEEILHELESRL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 731 RRTQLEQSVLQTELEKERQSLRDALGKAQSSEEKQQ----ENSELRAQLKQLQDD-------NSLLKKQLKDFQSHLNHV 799
Cdd:pfam01576 85 EEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQklqlEKVTTEAKIKKLEEDillledqNSKLSKERKLLEERISEF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 800 VDGLIHPEEVAARVDELRK-------------------RLKLGAGEMRIHSPSDVLGKSLADLQKQFSEILARSQWEKEE 860
Cdd:pfam01576 165 TSNLAEEEEKAKSLSKLKNkheamisdleerlkkeekgRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 861 AQVRERKLHEEMALQ----------QEKLANGQEEFKQacERALEARIKFDKRQHNARIQQLENEihyLQENLKSMEKIQ 930
Cdd:pfam01576 245 LQAALARLEEETAQKnnalkkirelEAQISELQEDLES--ERAARNKAEKQRRDLGEELEALKTE---LEDTLDTTAAQQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 931 GLTDLQLQEA-------DEEKERILAQLQELEKKKRREDARSQEQFLGLDTELKSLKKAVAASDKlaaaELTIAKEQLKS 1003
Cdd:pfam01576 320 ELRSKREQEVtelkkalEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALES----ENAELQAELRT 395
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 1004 LHGTVMRINQERAE---ELQE----AERSSREAMQAAKDLSRAEAEIELLQHLLREREGQ 1056
Cdd:pfam01576 396 LQQAKQDSEHKRKKlegQLQElqarLSESERQRAELAEKLSKLQSELESVSSLLNEAEGK 455
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
453-718 |
1.72e-04 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 45.84 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 453 LSELHHEIEAAEQKVLRATQEFKQLEEAIRQKkisEAEKDLLLKQLsgrlrhlNKLrqEALDL----EAQLEKQRKEIAE 528
Cdd:COG0497 153 LEELLEEYREAYRAWRALKKELEELRADEAER---ARELDLLRFQL-------EEL--EAAALqpgeEEELEEERRRLSN 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 529 KHEEINSAQLATDLLDSKDPkqshmkaqkrGKEQQLDimnkqytQLESRLDeilcRIATETEEIKDLEQQLTDGQIAANE 608
Cdd:COG0497 221 AEKLREALQEALEALSGGEG----------GALDLLG-------QALRALE----RLAEYDPSLAELAERLESALIELEE 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 609 ALKkDLEGVISGLQ---EYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKELAELENALQ 685
Cdd:COG0497 280 AAS-ELRRYLDSLEfdpERLEEVEERLALLRRLARKYGVTVEELLAYAEELRAELAELENSDERLEELEAELAEAEAELL 358
|
250 260 270
....*....|....*....|....*....|....
gi 1958764994 686 EQ-HEVNASLQQAQGDLSAYETELETQLKLKDAE 718
Cdd:COG0497 359 EAaEKLSAARKKAAKKLEKAVTAELADLGMPNAR 392
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
437-786 |
2.06e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 437 VQLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDLLLKQLS-GRLRHLNKLRQEALDL 515
Cdd:COG4717 125 LQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEEL 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 516 EAQLEKQRKEIAEKHEEINSAQLATDLLDSKDPKQSHMKAQKRGKEQQLDI----------------------------- 566
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaallallglggsllsliltiagvlflvlg 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 567 --------MNKQYTQLESRLDEILCRIATETEEIKDLEQQLtdgqiaanEALKKDLEGVISGLQEYLGTIKgqaaqaqnE 638
Cdd:COG4717 285 llallfllLAREKASLGKEAEELQALPALEELEEEELEELL--------AALGLPPDLSPEELLELLDRIE--------E 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 639 CRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKELAELENALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAE 718
Cdd:COG4717 349 LQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE 428
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958764994 719 tsQLKQELENLVRRTQLEQSVLQtELEKERQSLRDALGKAQSS---EEKQQENSELRAQLKQLQDDNSLLK 786
Cdd:COG4717 429 --ELEEELEELEEELEELEEELE-ELREELAELEAELEQLEEDgelAELLQELEELKAELRELAEEWAALK 496
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
451-770 |
2.32e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 45.06 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 451 TRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDLLLKQLSGRL----RHLNKLRQEALDLEAQLEKQRKEI 526
Cdd:pfam19220 76 RRLSAAEGELEELVARLAKLEAALREAEAAKEELRIELRDKTAQAEALERQLaaetEQNRALEEENKALREEAQAAEKAL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 527 AEKHEEINSAQLATDLLDskdpkqshmkAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQQLTDGQIA- 605
Cdd:pfam19220 156 QRAEGELATARERLALLE----------QENRRLQALSEEQAAELAELTRRLAELETQLDATRARLRALEGQLAAEQAEr 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 606 ---------ANEALKKDLEGV---ISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEivamdaenm 673
Cdd:pfam19220 226 eraeaqleeAVEAHRAERASLrmkLEALTARAAATEQLLAEARNQLRDRDEAIRAAERRLKEASIERDTLE--------- 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 674 rKELAELENALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELENLvrRTQLEQsvLQTELEKERQSLRD 753
Cdd:pfam19220 297 -RRLAGLEADLERRTQQFQEMQRARAELEERAEMLTKALAAKDAALERAEERIASL--SDRIAE--LTKRFEVERAALEQ 371
|
330
....*....|....*..
gi 1958764994 754 AlgKAQSSEEKQQENSE 770
Cdd:pfam19220 372 A--NRRLKEELQRERAE 386
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
669-908 |
2.62e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 2.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 669 DAENMRKELAELENA------LQEQHEVnasLQQAQGDLSAYEtELETQLKLKDAETSQLKQElenlvrRTQLEQSVLQT 742
Cdd:COG4913 226 AADALVEHFDDLERAhealedAREQIEL---LEPIRELAERYA-AARERLAELEYLRAALRLW------FAQRRLELLEA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 743 ELEKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNSL-----LKKQLKDFQSHLnhvvdglihpEEVAARVDELR 817
Cdd:COG4913 296 ELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGdrleqLEREIERLEREL----------EERERRRARLE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 818 KRLKlgagemrihspsdVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFKQACE--RALE 895
Cdd:COG4913 366 ALLA-------------ALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAeiASLE 432
|
250
....*....|....
gi 1958764994 896 ARIK-FDKRQHNAR 908
Cdd:COG4913 433 RRKSnIPARLLALR 446
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
635-1127 |
2.84e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 635 AQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKELAELENALQEQHEVNASLQQAQGDLSAYETELETQLKL 714
Cdd:pfam02463 182 TENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 715 KDAETSQLKQELENLVRRTQLEQSVLQTELEKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQS 794
Cdd:pfam02463 262 KEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 795 HLNHVVDGLIHPEEVAarVDELRKRLKlgagemrihspsdvlgksLADLQKQFSEILARSQWEKEEAQVRERKLHEEMAL 874
Cdd:pfam02463 342 KELKELEIKREAEEEE--EEELEKLQE------------------KLEQLEEELLAKKKLESERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 875 QQEKLANGQ-EEFKQACERALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQE 953
Cdd:pfam02463 402 EEEKEAQLLlELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVK 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 954 LEKKKRREDARSQEQFLG-LDTELKSLKKAVAASDKLAAAELTIAKEQLKSLHGTVMrINQERAEELQEAERSSREAMQA 1032
Cdd:pfam02463 482 LQEQLELLLSRQKLEERSqKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAV-ENYKVAISTAVIVEVSATADEV 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 1033 AKDLSRAEAEIELLQHLLREREGQFRDEMENAHVGSKGANLQLLEIEALKEAMAKQRAEITRLRDVLNLTGTGKKGGIEN 1112
Cdd:pfam02463 561 EERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKES 640
|
490
....*....|....*
gi 1958764994 1113 VVEEIAELRHAVSAQ 1127
Cdd:pfam02463 641 AKAKESGLRKGVSLE 655
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
735-1141 |
2.99e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 2.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 735 LEQSV--LQTELEkERQSLRDALGKAQSSEEKQQEN--SELRAQLKQLQDDNSLLKKQLKDFQSHLNHVVDGLIHPEEVA 810
Cdd:pfam15921 108 LRQSVidLQTKLQ-EMQMERDAMADIRRRESQSQEDlrNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVL 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 811 ARVDELRKRLKLGAGEmRIHSPSDVLGKSLADLQKQFSEILarsqwekeeaqvreRKLHEEMALQQEKLANGQEEFkQAC 890
Cdd:pfam15921 187 QEIRSILVDFEEASGK-KIYEHDSMSTMHFRSLGSAISKIL--------------RELDTEISYLKGRIFPVEDQL-EAL 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 891 ERALEARIKFDKRQHNARIQQLENEiHYLQenlksmekIQGLTDlQLQEADEEKERILAQLQELEKKKRREDARSQEQFL 970
Cdd:pfam15921 251 KSESQNKIELLLQQHQDRIEQLISE-HEVE--------ITGLTE-KASSARSQANSIQSQLEIIQEQARNQNSMYMRQLS 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 971 GLDTELKSLKKAVAASDKLAAAELTIAKEQLKSLHGTVMRINQERAEELQEAERSSREAMQAAKDLSRAEAEIEL----- 1045
Cdd:pfam15921 321 DLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLekeqn 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 1046 -------------LQHLLREREGQfrdemeNAHVGSKGANLQLLEIEA---LKEAMAKQRAEITRLRDVLNLTGT--GKK 1107
Cdd:pfam15921 401 krlwdrdtgnsitIDHLRRELDDR------NMEVQRLEALLKAMKSECqgqMERQMAAIQGKNESLEKVSSLTAQleSTK 474
|
410 420 430
....*....|....*....|....*....|....
gi 1958764994 1108 GGIENVVEEIAELRHAVSAQNEYISSMADPVQRQ 1141
Cdd:pfam15921 475 EMLRKVVEELTAKKMTLESSERTVSDLTASLQEK 508
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
473-757 |
3.26e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.92 E-value: 3.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 473 EFKQLEEAIRQKKISEAEKdlLLKQLSgrlRHLNKLRQEaldleaqLEKQRKEIAEKheeinsaqlatdlldskdpkqsh 552
Cdd:PRK05771 32 HIEDLKEELSNERLRKLRS--LLTKLS---EALDKLRSY-------LPKLNPLREEK----------------------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 553 MKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQQLtdgqiaanEALK--KDLEGVISGLQ--EYLGTI 628
Cdd:PRK05771 77 KKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI--------ERLEpwGNFDLDLSLLLgfKYVSVF 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 629 KGQAAQAQNECRKLQDEKETLLqrltEVKQEKDELEIVAM----DAENMRKELAELENALQEQHEvnaslqqaQGDLSAY 704
Cdd:PRK05771 149 VGTVPEDKLEELKLESDVENVE----YISTDKGYVYVVVVvlkeLSDEVEEELKKLGFERLELEE--------EGTPSEL 216
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1958764994 705 ETELETQLKLKDAETSQLKQELENLVRRTQLEQSVLQTEL--EKERQSLRDALGK 757
Cdd:PRK05771 217 IREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLeiELERAEALSKFLK 271
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
505-785 |
3.47e-04 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 44.68 E-value: 3.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 505 LNKLRQEALDLEAQLEKQRKEIAEKHEEINSAQlatdlldskdPKQSHMKAQKRGKEQQLDIMNKQYTQLESRLDEILCR 584
Cdd:PRK11637 35 LCAFSAHASDNRDQLKSIQQDIAAKEKSVRQQQ----------QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQ 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 585 IATETEEIKDLEQQltdgQIAANEALKKDL-----EGVISGLQEYLGTIKGQAAQA-------QNECRklQDEKETLLQR 652
Cdd:PRK11637 105 IDELNASIAKLEQQ----QAAQERLLAAQLdaafrQGEHTGLQLILSGEESQRGERilayfgyLNQAR--QETIAELKQT 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 653 LTEVKQEKDELEivamDAENMRKELaelenaLQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLKQElenlvrR 732
Cdd:PRK11637 179 REELAAQKAELE----EKQSQQKTL------LYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRAN------E 242
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1958764994 733 TQLEQSVLQTELEKERQSLRDALgKAQSSEEKQQENSELRAQLKQLQDDNSLL 785
Cdd:PRK11637 243 SRLRDSIARAEREAKARAEREAR-EAARVRDKQKQAKRKGSTYKPTESERSLM 294
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
631-987 |
3.82e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 3.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 631 QAAQAQNE---CRKLQDEKEtllQRLTEVKQEKDELE----IVAMDAENMRKELAELENALQEQHEvnasLQQAQGDLSA 703
Cdd:PRK04863 287 EALELRRElytSRRQLAAEQ---YRLVEMARELAELNeaesDLEQDYQAASDHLNLVQTALRQQEK----IERYQADLEE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 704 YETELETQLKLKdAETSQLKQELENLVRRTQLEQSVLQTELEKERQslrdALGKAQSSEEKQQENSELRAQLKQLQDDNS 783
Cdd:PRK04863 360 LEERLEEQNEVV-EEADEQQEENEARAEAAEEEVDELKSQLADYQQ----ALDVQQTRAIQYQQAVQALERAKQLCGLPD 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 784 LLKKQLKDFQSHLNHvvdgliHPEEVAARVDELRKRLKLGAGEMRIHSPSDVLGKSLAD------LQKQFSEILARSQWE 857
Cdd:PRK04863 435 LTADNAEDWLEEFQA------KEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGevsrseAWDVARELLRRLREQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 858 KEEA---QVRERKLHE-EMALQQEKLANGQ-EEFKQACERALEARIKFDK--RQHNARIQQLE----------NEIHYLQ 920
Cdd:PRK04863 509 RHLAeqlQQLRMRLSElEQRLRQQQRAERLlAEFCKRLGKNLDDEDELEQlqEELEARLESLSesvsearerrMALRQQL 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 921 ENLKSmeKIQGLTDL------------QLQE----ADEEKERI---LAQLQELEKKKRREDARSQEQFLGLDTELKSLKK 981
Cdd:PRK04863 589 EQLQA--RIQRLAARapawlaaqdalaRLREqsgeEFEDSQDVteyMQQLLERERELTVERDELAARKQALDEEIERLSQ 666
|
....*.
gi 1958764994 982 AVAASD 987
Cdd:PRK04863 667 PGGSED 672
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
170-213 |
5.35e-04 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 38.77 E-value: 5.35e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1958764994 170 NLQKLNLAGNEIEHIPgwFSKKLKSLRVLNLKGN-KISSLQDVSK 213
Cdd:pfam12799 2 NLEVLDLSNNQITDIP--PLAKLPNLETLDLSGNnKITDLSDLAN 44
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
438-725 |
5.57e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 5.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 438 QLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRA-----TQEFKQLEEAIRQKKISEAEKDLLLKQLSGRLRHLNKLRQEA 512
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLEARLSHSripeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL 838
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 513 LDLEAQLEKQRKEIAEKHEEINsaqlatdlldskdpkqshmkAQKRGKEQQLDIMNKQYTQLESRLDEIlcriateTEEI 592
Cdd:TIGR02169 839 QEQRIDLKEQIKSIEKEIENLN--------------------GKKEELEEELEELEAALRDLESRLGDL-------KKER 891
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 593 KDLEQQLTDGQIAANEALKK--DLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQrLTEVKQEKDELE--IVAM 668
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQieKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS-LEDVQAELQRVEeeIRAL 970
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958764994 669 DAENMRkelaelenALQEQHEVNASLQQAQGDLSAYETElETQLKLKDAETSQLKQE 725
Cdd:TIGR02169 971 EPVNML--------AIQEYEEVLKRLDELKEKRAKLEEE-RKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
260-682 |
5.81e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 5.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 260 RQEAFERFSLEEIERLEKDLEKKTVETEELKNKQTKFLEEIKH-QDKLNKSLKEEAMLQKQScEELESDLNTKKELLKQK 338
Cdd:TIGR02169 664 GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDElSQELSDASRKIGEIEKEI-EQLEQEEEKLKERLEEL 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 339 TVELTRACQKQYELEQELAFY--KIDAKFEPLNYYPSEYAEMDKSPDESpyigksrykrnmfatetyivsdaqavQVRKM 416
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELeaRIEELEEDLHKLEEALNDLEARLSHS--------------------------RIPEI 796
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 417 VPDGGQLRHEHApraqappdvqleDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEairQKKISEAEKDLLLK 496
Cdd:TIGR02169 797 QAELSKLEEEVS------------RIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE---QIKSIEKEIENLNG 861
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 497 QLSGRLRHLNKLRQEALDLEAQLEKQRKEIAEkheeinsaqlatdlldskdpkqshMKAQKRGKEQQLDIMNKQYTQLES 576
Cdd:TIGR02169 862 KKEELEEELEELEAALRDLESRLGDLKKERDE------------------------LEAQLRELERKIEELEAQIEKKRK 917
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 577 RLDEILCRIATETEEIKDLEQQLTDGQ-IAANEALKKDLEGVISGLQE---YLGTIKGQAAQ-------AQNECR----K 641
Cdd:TIGR02169 918 RLSELKAKLEALEEELSEIEDPKGEDEeIPEEELSLEDVQAELQRVEEeirALEPVNMLAIQeyeevlkRLDELKekraK 997
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1958764994 642 LQDEKETLLQRLTEVKQEKDELEIVAMDA--ENMRKELAELEN 682
Cdd:TIGR02169 998 LEEERKAILERIEEYEKKKREVFMEAFEAinENFNEIFAELSG 1040
|
|
| DUF3450 |
pfam11932 |
Protein of unknown function (DUF3450); This family of proteins are functionally ... |
631-761 |
5.82e-04 |
|
Protein of unknown function (DUF3450); This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are about 260 amino acids in length.
Pssm-ID: 432198 [Multi-domain] Cd Length: 238 Bit Score: 42.99 E-value: 5.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 631 QAAQAQNECRKLQDEKETLLQRLTEVKQEKdeleivamdaENMRKELAELENALQEQHEVNASLQQAQGDLSAYETELET 710
Cdd:pfam11932 28 AAAQSQKKIDKWDDEKQELLAEYRALKAEL----------ESLEVYNRQLERLVASQEQEIASLERQIEEIERTERELVP 97
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1958764994 711 QLklkDAETSQLKQELENLVrrtqleqSVLQTELEKERQSLRDALGKAQSS 761
Cdd:pfam11932 98 LM---LKMLDRLEQFVALDL-------PFLLEERQARLARLRELMDDADVS 138
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
438-790 |
5.91e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 5.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 438 QLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKkisEAEKDLLLKQLSgrlrhlnklrqealDLEA 517
Cdd:TIGR04523 371 EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKL---QQEKELLEKEIE--------------RLKE 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 518 QLEKQRKEIAEKHEEINSAQLATDLLDSKDPKQshmkaqkrgkEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQ 597
Cdd:TIGR04523 434 TIIKNNSEIKDLTNQDSVKELIIKNLDNTRESL----------ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNE 503
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 598 QltdgqiaanealKKDLEGVISGLqeylgtiKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVaMDAENMRKEL 677
Cdd:TIGR04523 504 E------------KKELEEKVKDL-------TKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFE-LKKENLEKEI 563
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 678 AELENALQEQHEVNASLQQAQgdlsayeTELETQLKLKDAETSQLKQELEnlvrrtqlEQSVLQTELEKErqslrdalgk 757
Cdd:TIGR04523 564 DEKNKEIEELKQTQKSLKKKQ-------EEKQELIDQKEKEKKDLIKEIE--------EKEKKISSLEKE---------- 618
|
330 340 350
....*....|....*....|....*....|...
gi 1958764994 758 aqsSEEKQQENSELRAQLKQLQDDNSLLKKQLK 790
Cdd:TIGR04523 619 ---LEKAKKENEKLSSIIKNIKSKKNKLKQEVK 648
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
857-1031 |
9.14e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 9.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 857 EKEEAQVRERKLHEEMALQQEKLANGQEEFKQaceraLEARIKFDKRQHNARIQQLENEIHYLQENLKsmEKIQGLTDLQ 936
Cdd:PRK12704 37 EEEAKRILEEAKKEAEAIKKEALLEAKEEIHK-----LRNEFEKELRERRNELQKLEKRLLQKEENLD--RKLELLEKRE 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 937 lQEADEEKERILAQLQELEKKKRREDARSQEQflglDTELKSLkkavaasdklaaAELTI--AKEQL------KSLHGTV 1008
Cdd:PRK12704 110 -EELEKKEKELEQKQQELEKKEEELEELIEEQ----LQELERI------------SGLTAeeAKEILlekveeEARHEAA 172
|
170 180
....*....|....*....|....*..
gi 1958764994 1009 MRINQERAEELQEAERSSRE----AMQ 1031
Cdd:PRK12704 173 VLIKEIEEEAKEEADKKAKEilaqAIQ 199
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
609-767 |
1.01e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 42.88 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 609 ALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKELAELENALQEQH 688
Cdd:pfam15905 177 AKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITELSCVSEQVEKYKLDIAQLEELLKEKN 256
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958764994 689 EVNASLQQaqgDLSAYETELETQLKLKDAETSQLKQELENLVRRTQLEQSVLQTELEKERQSLRDalgKAQSSEEKQQE 767
Cdd:pfam15905 257 DEIESLKQ---SLEEKEQELSKQIKDLNEKCKLLESEKEELLREYEEKEQTLNAELEELKEKLTL---EEQEHQKLQQK 329
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
414-966 |
1.09e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 414 RKMVPDGGQLRHEHA-PRAQ-APPDVQLEDTGKQIVAAQTRLselhheieaaEQKVLRATQEFKQLEEAirQKKISEAEK 491
Cdd:pfam01576 211 RKLEGESTDLQEQIAeLQAQiAELRAQLAKKEEELQAALARL----------EEETAQKNNALKKIREL--EAQISELQE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 492 DLLLKQLSgrlrhlnklrqealdlEAQLEKQRKEIAEKHEeinsaQLATDLLDSKDPK--QSHMKAQKRGKEQQLD-IMN 568
Cdd:pfam01576 279 DLESERAA----------------RNKAEKQRRDLGEELE-----ALKTELEDTLDTTaaQQELRSKREQEVTELKkALE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 569 KQYTQLESRLDEILCRIATETEEIKDLEQQLTDGQIAANEAlKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKET 648
Cdd:pfam01576 338 EETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKA-KQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 649 LLQRLTEVKQEKDELeivamdAENMRKELAELENALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQlKQELEN 728
Cdd:pfam01576 417 LQARLSESERQRAEL------AEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQ-KLNLST 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 729 LVRRTQLEQSVLQTELEKERQSLRDALGKAQSSeekQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLNHVVDGLIHPEE 808
Cdd:pfam01576 490 RLRQLEDERNSLQEQLEEEEEAKRNVERQLSTL---QAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAA 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 809 VAARVDELRKRLKLGAGEMRIHSPSD-VLGKSLADLQKQFSEILARSQWEKEEAQvRERKLHEEMALQQEKLAngqEEFK 887
Cdd:pfam01576 567 AYDKLEKTKNRLQQELDDLLVDLDHQrQLVSNLEKKQKKFDQMLAEEKAISARYA-EERDRAEAEAREKETRA---LSLA 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 888 QACERALEARIKFDK--RQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKKRREDARS 965
Cdd:pfam01576 643 RALEEALEAKEELERtnKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNM 722
|
.
gi 1958764994 966 Q 966
Cdd:pfam01576 723 Q 723
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
556-803 |
1.18e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.08 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 556 QKRGKEQQLDIMNKQYTQLESRLDEILCR-------IATETEEIKDLEQQLTDgQIAANEALKKDLEGVISGLQEYLGTI 628
Cdd:PHA02562 189 KIDHIQQQIKTYNKNIEEQRKKNGENIARkqnkydeLVEEAKTIKAEIEELTD-ELLNLVMDIEDPSAALNKLNTAAAKI 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 629 KGQAAQAQNECRKLQDEKE--TLLQ-------RLTEVKQEKDELEIVAMDAENMRKELAELENALQEQ----HEVNASLQ 695
Cdd:PHA02562 268 KSKIEQFQKVIKMYEKGGVcpTCTQqisegpdRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQskklLELKNKIS 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 696 QAQGDLSAYeteletqlklkDAETSQLKQELENLvrrtQLEQSVLQTELEKERQSLRDALGKAQSSEEKQQENSELRAQL 775
Cdd:PHA02562 348 TNKQSLITL-----------VDKAKKVKAAIEEL----QAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLL 412
|
250 260
....*....|....*....|....*...
gi 1958764994 776 KQLQDDNSLLKKQLKDFQSHLNHVVDGL 803
Cdd:PHA02562 413 KDSGIKASIIKKYIPYFNKQINHYLQIM 440
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
273-770 |
1.19e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 273 ERLEKDLEKKTVETEELKNKQTKFLEEIKHQDKLNKSLKEEAmlqKQSCEELESDLNTKKELLKQKTVELTRACQKQYEL 352
Cdd:PTZ00121 1293 DEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAA---KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 353 EQELAFYKIDAKFEPLNYYPSEYAEMDKSPDESPYIGKSRYKRNMFATETYIVSDAQAVQVRKmvPDGGQLRHEHAPRAQ 432
Cdd:PTZ00121 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK--ADEAKKKAEEAKKAD 1447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 433 APPDVQLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAirQKKISEAEKDLLLKQLSGRLRHLNKLRQeA 512
Cdd:PTZ00121 1448 EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEA--KKKADEAKKAAEAKKKADEAKKAEEAKK-A 1524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 513 LDLEAQLEKQRKEIAEKHEEINSAQLATDLLDSKDPKQSHMKAQKRGKEQQldimnkqyTQLESRLDEILCRIatETEEI 592
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEED--------KNMALRKAEEAKKA--EEARI 1594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 593 KDLEQQLTDGQIAANEALKKDLEGVISGlqeylgtikgqaaqaqNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAEN 672
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKA----------------EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 673 MRKELAELENALQEQHEVNASLQQAQGDlsayETELETQLKLKDAETSQLKQelenlVRRTQLEQSVLQTELEKERQSLR 752
Cdd:PTZ00121 1659 NKIKAAEEAKKAEEDKKKAEEAKKAEED----EKKAAEALKKEAEEAKKAEE-----LKKKEAEEKKKAEELKKAEEENK 1729
|
490
....*....|....*...
gi 1958764994 753 DALGKAQSSEEKQQENSE 770
Cdd:PTZ00121 1730 IKAEEAKKEAEEDKKKAE 1747
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
245-687 |
1.53e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 245 RSLESLEGQPVTTQDRQEAFERFS-----LEEIERLEKDLEKKTVETEELKNKQTKFLEEIKHQDKLNKSLKEeamLQKQ 319
Cdd:COG4717 102 EELEELEAELEELREELEKLEKLLqllplYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAE---LQEE 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 320 SCEELESDLNTKKELLKQKTVELTRACQKQYELEQELAfyKIDAKFEPLNYYPSEYAEMDKSPDESPYIGKSRYKRNMFA 399
Cdd:COG4717 179 LEELLEQLSLATEEELQDLAEELEELQQRLAELEEELE--EAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAA 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 400 T-------------ETYIVSDAQAVQVRKMVPDGGQLRHEHAPRAQAPPDVQLEDTGKQIVAAQTR--LSELHHEIEAAE 464
Cdd:COG4717 257 AllallglggsllsLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEelLAALGLPPDLSP 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 465 QKVLRATQEFKQLEEAIRQkkISEAEKDLLLKQLSGRLRHLnkLRQEALDLEAQLEKQRKEIAEKHEEINSAQLATDLLD 544
Cdd:COG4717 337 EELLELLDRIEELQELLRE--AEELEEELQLEELEQEIAAL--LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLE 412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 545 SKDP--KQSHMKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEqqlTDGQIAANEALKKDLEGVISGLQ 622
Cdd:COG4717 413 ELLGelEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLE---EDGELAELLQELEELKAELRELA 489
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958764994 623 EYLGTIKGQAAQAQNECRKLQDEK--------ETLLQRLTEVKQEK----DELEIVAMDAENMRKELAELENALQEQ 687
Cdd:COG4717 490 EEWAALKLALELLEEAREEYREERlppvleraSEYFSRLTDGRYRLiridEDLSLKVDTEDGRTRPVEELSRGTREQ 566
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
507-1059 |
1.53e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.81 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 507 KLRQEALDLEAQLEKQRKEIAEKHEEINSAQLATDLldskdpKQSHMKAQKRGKEQQLDImnkqyTQLESRLDEILCRIA 586
Cdd:pfam05557 4 LIESKARLSQLQNEKKQMELEHKRARIELEKKASAL------KRQLDRESDRNQELQKRI-----RLLEKREAEAEEALR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 587 TETEEIKDLEQQL--TDGQIAANEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELE 664
Cdd:pfam05557 73 EQAELNRLKKKYLeaLNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 665 IVAMDAENMRKELA---------ELENALQEQ-HEVNASLQQAQGDLSAYETELE------TQLKLKDAETSQLKQELEN 728
Cdd:pfam05557 153 QLRQNLEKQQSSLAeaeqrikelEFEIQSQEQdSEIVKNSKSELARIPELEKELErlrehnKHLNENIENKLLLKEEVED 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 729 LVRR------TQLEQSVLQTELEKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLNHV--- 799
Cdd:pfam05557 233 LKRKlereekYREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTSSARQLeka 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 800 -VDGLIHPEEVAARVDELRKRLKLGAGEMRIHSPSDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEk 878
Cdd:pfam05557 313 rRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAEDMTQK- 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 879 langqeefKQACERALEARIKFDKRQ---HNARIQQLENEIHYLQENLKSMEkiQGLTDLQLQEADEEKERILAQLQELE 955
Cdd:pfam05557 392 --------MQAHNEEMEAQLSVAEEElggYKQQAQTLERELQALRQQESLAD--PSYSKEEVDSLRRKLETLELERQRLR 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 956 KKKRREDARSQEQFLGLDTELKSLkKAVAASDKLAAAELTIAKEQLKSLHGTVMRINQ--ERAEELQEA---------ER 1024
Cdd:pfam05557 462 EQKNELEMELERRCLQGDYDPKKT-KVLHLSMNPAAEAYQQRKNQLEKLQAEIERLKRllKKLEDDLEQvlrlpettsTM 540
|
570 580 590
....*....|....*....|....*....|....*
gi 1958764994 1025 SSREAMQAAKDLSRAEAEIELLQHLLREREGQFRD 1059
Cdd:pfam05557 541 NFKEVLDLRKELESAELKNQRLKEVFQAKIQEFRD 575
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
569-897 |
1.54e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 569 KQYTQLESRLDEILCRIATETEEIKDLEQQLTDGQ--IAANEAL--KKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQD 644
Cdd:PRK04863 786 KRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSrfIGSHLAVafEADPEAELRQLNRRRVELERALADHESQEQQQRS 865
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 645 EKETLLQRLTEVKQEKDELEIvaMDAENMRKELAELENALQEQHEVNASLQQAQGDLSAYETELETqLKLKDAETSQLKQ 724
Cdd:PRK04863 866 QLEQAKEGLSALNRLLPRLNL--LADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSV-LQSDPEQFEQLKQ 942
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 725 ELENLvrRTQLEQSVLQTELEKERQSLRDALGKAQSSE---EKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHL---NH 798
Cdd:PRK04863 943 DYQQA--QQTQRDAKQQAFALTEVVQRRAHFSYEDAAEmlaKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLaqyNQ 1020
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 799 VVDGLIHPEEVAAR-VDELRKRLKlgagEMRIHSPSDVLGKSLADlQKQFSEILARSQWEKEEAQVRERKLHEEMALQQE 877
Cdd:PRK04863 1021 VLASLKSSYDAKRQmLQELKQELQ----DLGVPADSGAEERARAR-RDELHARLSANRSRRNQLEKQLTFCEAEMDNLTK 1095
|
330 340
....*....|....*....|
gi 1958764994 878 KLANGQEEFKQACERALEAR 897
Cdd:PRK04863 1096 KLRKLERDYHEMREQVVNAK 1115
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
86-225 |
1.54e-03 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 41.96 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 86 ALIKKLTKQDNLALVKSLNLSLSKDGGKKFryIENLEKCV-KLEVLNLSYNLI--AKIEKVDKLLR----LRELNLSYNK 158
Cdd:cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLL--AKGLKDLPpALEKLVLGRNRLegASCEALAKALRanrdLKELNLANNG 176
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958764994 159 ISK------IEGLENMCNLQKLNLAGNEIEHIPGWF----SKKLKSLRVLNLKGNKISSLqDVSKLKPLQDLTSLTL 225
Cdd:cd00116 177 IGDagiralAEGLKANCNLEVLDLNNNGLTDEGASAlaetLASLKSLEVLNLGDNNLTDA-GAAALASALLSPNISL 252
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
838-1070 |
1.63e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 838 KSLADLQKQFSEI---LARSQWEKEEAQVRERKLHEEMALQQEKLANGQEEFKQACER--ALEARIKFDKRQHNARIQQL 912
Cdd:COG4942 20 DAAAEAEAELEQLqqeIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQElaALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 913 ENEIHYLQENLKSMEKIQGLTDLQL---QEADEEKERILAQLQELEKKkRREDARSQEQFLGLDTELKSLKKAVAASDKL 989
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPA-RREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 990 AAAELTIAKEQLKSLHgtvmrinQERAEELQEAERSSREAMQAAKDLSRAEAEIE-LLQHLLREREGQFRDEMENAHVGS 1068
Cdd:COG4942 179 LLAELEEERAALEALK-------AERQKLLARLEKELAELAAELAELQQEAEELEaLIARLEAEAAAAAERTPAAGFAAL 251
|
..
gi 1958764994 1069 KG 1070
Cdd:COG4942 252 KG 253
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
266-821 |
2.04e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 266 RFSLEEIERLEKDLEKKTVETEELKNKQTKflEEIKHQDKLNKslKEEAMLQKQSCEElesDLNTKKELLKQKTVELTRA 345
Cdd:PRK01156 179 RAEISNIDYLEEKLKSSNLELENIKKQIAD--DEKSHSITLKE--IERLSIEYNNAMD---DYNNLKSALNELSSLEDMK 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 346 cqKQYELEQELAFYKIDAKFEPLNYYPSEYAEMDKSPDESPYIGKSRYKrnmfateTYIVSDAQAVQVRKMVPD-GGQLR 424
Cdd:PRK01156 252 --NRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYIN-------DYFKYKNDIENKKQILSNiDAEIN 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 425 HEHAPRAQAPpdvQLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEaiRQKKISEAEKDLllKQLSGRL-R 503
Cdd:PRK01156 323 KYHAIIKKLS---VLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIES--LKKKIEEYSKNI--ERMSAFIsE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 504 HLNKLRQEALDLEAQLEKQRKEIAEKHEEINSAQLATDLLDSKDPKQSHMKAQKRGK-----------EQQLDIMNKQYT 572
Cdd:PRK01156 396 ILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQsvcpvcgttlgEEKSNHIINHYN 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 573 QLESRLDEilcRIATETEEIKDLEQQLTDgqiaaneaLKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQR 652
Cdd:PRK01156 476 EKKSRLEE---KIREIEIEVKDIDEKIVD--------LKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDK 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 653 ltEVKQEKDELEIVAMDAENMRKELAELENAL------------QEQHEVNASLQQAQGDLSAYETELETQLKLKDAETS 720
Cdd:PRK01156 545 --HDKYEEIKNRYKSLKLEDLDSKRTSWLNALavislidietnrSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIR 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 721 QLKQELENLVRRTQLEQSvLQTELEKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLNH-- 798
Cdd:PRK01156 623 EIENEANNLNNKYNEIQE-NKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARle 701
|
570 580
....*....|....*....|....*
gi 1958764994 799 --VVDGLIHPEEVAARVDELRKRLK 821
Cdd:PRK01156 702 stIEILRTRINELSDRINDINETLE 726
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
601-761 |
2.07e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 41.64 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 601 DGQIAANEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEivamDAENMRKELAEL 680
Cdd:pfam00529 64 EAQLAKAQAQVARLQAELDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLA----RRRVLAPIGGIS 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 681 ENALQEQhevNASLQQAQGDLSAYETELETQLKLKDAETSQLKQELENLVRRTQLEQSVLQTELEKERQSLRDALGKAQS 760
Cdd:pfam00529 140 RESLVTA---GALVAQAQANLLATVAQLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEAELKLAKLDLERTEIRAPV 216
|
.
gi 1958764994 761 S 761
Cdd:pfam00529 217 D 217
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
438-1094 |
2.19e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 438 QLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDLLLKQLSGRLRHLNKLR---QEALD 514
Cdd:pfam01576 427 QRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERnslQEQLE 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 515 LEAQ-----------LEKQRKEIAEKHEEINSAQLATDLLDSKDPKQSHMKAQK-RGKEQQLDIMNKQYTQLESRLDEIL 582
Cdd:pfam01576 507 EEEEakrnverqlstLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQlEEKAAAYDKLEKTKNRLQQELDDLL 586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 583 CRIATETEEIKDLE-------QQLTDGQIAAN---------EALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEK 646
Cdd:pfam01576 587 VDLDHQRQLVSNLEkkqkkfdQMLAEEKAISAryaeerdraEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEM 666
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 647 ETLLQRLTEVKQEKDELE----IVAMDAENMRKELAELENALQEQHEVNASLQQaqgDLSAYETELETQLKLKDAETSQL 722
Cdd:pfam01576 667 EDLVSSKDDVGKNVHELErskrALEQQVEEMKTQLEELEDELQATEDAKLRLEV---NMQALKAQFERDLQARDEQGEEK 743
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 723 KQELENLVRRtqleqsvLQTELEKERQSLRDALGkaqSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLNHVVDG 802
Cdd:pfam01576 744 RRQLVKQVRE-------LEAELEDERKQRAQAVA---AKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRE 813
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 803 LihpEEVAARVDELRKRLKlgagemrihsPSDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMALQQEKLANG 882
Cdd:pfam01576 814 L---EEARASRDEILAQSK----------ESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSAL 880
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 883 QEEfkqaceralearikfdKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEE--KERILAQlqelekkkRR 960
Cdd:pfam01576 881 QDE----------------KRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTElaAERSTSQ--------KS 936
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 961 EDARSQ--EQFLGLDTELKSLKKAVAASDKLAAAELTIAKEQLkslhgtvmrinqeraEELQEAErsSREAMQAAKDLSR 1038
Cdd:pfam01576 937 ESARQQleRQNKELKAKLQEMEGTVKSKFKSSIAALEAKIAQL---------------EEQLEQE--SRERQAANKLVRR 999
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958764994 1039 AEAEI-ELLQHLLREREG--QFRDEMENAHVGSKGANLQLLEIEALKEAMAKQRAEITR 1094
Cdd:pfam01576 1000 TEKKLkEVLLQVEDERRHadQYKDQAEKGNSRMKQLKRQLEEAEEEASRANAARRKLQR 1058
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
620-1051 |
2.24e-03 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 42.26 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 620 GLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKELAELENALQEQHEVNASLQQAQG 699
Cdd:COG4995 14 LAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALLAAA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 700 DLSAYETELETQLKLKDAETSQLKQELENLVRRTQLEQSVLQTELEKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQ 779
Cdd:COG4995 94 LALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALALALA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 780 DDN-SLLKKQLKDFQSHLNHVVDGLIHPEEVAARVDELRKRLKLGAGEMRIHSPSDVLGKSLADLQKQFSEILARSQWEK 858
Cdd:COG4995 174 AAAlALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAALAAA 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 859 EEAQVRERKLHEEMALQQEKLANGQEEFKQACERALEARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQ 938
Cdd:COG4995 254 AAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLLAALALL 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 939 EADEEKERILAQLQELEKKKRREDARSQEQFLGLDTELKSLKKAVAASDKLAAAELTIAKEQLKSLHGTVMRINQERAEE 1018
Cdd:COG4995 334 ALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQLLRLLL 413
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1958764994 1019 LQEAERSSREAMQAAKDLS-----------RAEAEIELLQHLLR 1051
Cdd:COG4995 414 AALALLLALAAYAAARLALlalieyiilpdRLYAFVQLYQLLIA 457
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
844-1089 |
2.47e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 844 QKQFSEILARSQWEKEEaQVRERKLHEEMA--------LQQEKLANGQEEFKQACERALEARIKFDKRQHNARIQQ---- 911
Cdd:pfam17380 281 QKAVSERQQQEKFEKME-QERLRQEKEEKAreverrrkLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQeerk 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 912 LENEIHYLQENLKSMEKIQGLTDLQLqEADEEKERILAQLQELEKKKRREDARsQEQFLGLDTELKSLKKavaasdklaa 991
Cdd:pfam17380 360 RELERIRQEEIAMEISRMRELERLQM-ERQQKNERVRQELEAARKVKILEEER-QRKIQQQKVEMEQIRA---------- 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 992 aeltiakEQLKSLHGTVMRINQERAEELQEAERSSREAMQAAKDLSRAEAEIELLQHLL-REREGQFRDEMENAHVGSKg 1070
Cdd:pfam17380 428 -------EQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELeKEKRDRKRAEEQRRKILEK- 499
|
250
....*....|....*....
gi 1958764994 1071 anlqllEIEALKEAMAKQR 1089
Cdd:pfam17380 500 ------ELEERKQAMIEEE 512
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
786-1088 |
2.50e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 786 KKQLKDFQSHLNHVVDGLihpEEVAARVDELrkrlklgagEMRIHSPSDVLGKSLADLQKQfsEILARSQWEKEEAQVRE 865
Cdd:COG3096 298 RRQLAEEQYRLVEMAREL---EELSARESDL---------EQDYQAASDHLNLVQTALRQQ--EKIERYQEDLEELTERL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 866 RKLHEEMALQQEKLANGQEEFKQACERALEARIKFDKRQHNARIQQLENeIHYLQ--ENLKSMEKIQGLTDLQLQEADEE 943
Cdd:COG3096 364 EEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRA-IQYQQavQALEKARALCGLPDLTPENAEDY 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 944 KERILAQLQELEkkkrrEDARSQEQFLGL--------DTELKSLKKAVAASDKLAAAEltIAKEQL------KSLHGTVM 1009
Cdd:COG3096 443 LAAFRAKEQQAT-----EEVLELEQKLSVadaarrqfEKAYELVCKIAGEVERSQAWQ--TARELLrryrsqQALAQRLQ 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 1010 RINQE------RAEELQEAERSSRE-AMQAAKDLSRAEaEIELLQHLLREREGQFRDEMENAHVGSKGANLQLLEIEALK 1082
Cdd:COG3096 516 QLRAQlaeleqRLRQQQNAERLLEEfCQRIGQQLDAAE-ELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARI 594
|
....*.
gi 1958764994 1083 EAMAKQ 1088
Cdd:COG3096 595 KELAAR 600
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
578-686 |
2.55e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.99 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 578 LDEILCRIATET----EEIKDLEQQLTDGQIAAnEALKKDLEgviSGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRL 653
Cdd:COG0542 395 IDEAAARVRMEIdskpEELDELERRLEQLEIEK-EALKKEQD---EASFERLAELRDELAELEEELEALKARWEAEKELI 470
|
90 100 110
....*....|....*....|....*....|...
gi 1958764994 654 TEVKQEKDELEIVAMDAENMRKELAELENALQE 686
Cdd:COG0542 471 EEIQELKEELEQRYGKIPELEKELAELEEELAE 503
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
606-968 |
2.67e-03 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 41.92 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 606 ANEALKKDLEGVISGLQEYLGTI-----KGQAAQAQNECRKLQDEKETLLQRLTEVKqEKDELEIVA-----MDA--ENM 673
Cdd:NF033838 52 GNESQKEHAKEVESHLEKILSEIqksldKRKHTQNVALNKKLSDIKTEYLYELNVLK-EKSEAELTSktkkeLDAafEQF 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 674 RKELAELENALQE-QHEVNASLQQAQG----DLSAYET------EL---ETQLKLKDAETSQLKQElenlVRRTQLEQSV 739
Cdd:NF033838 131 KKDTLEPGKKVAEaTKKVEEAEKKAKDqkeeDRRNYPTntyktlELeiaESDVEVKKAELELVKEE----AKEPRDEEKI 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 740 LQTELEKE-RQSLRDALGKAQSSEEKQQENSELRA--QLKQLQDDNSLLKKQLKDfQSHLNHVVDGlihpeeVAARVDEL 816
Cdd:NF033838 207 KQAKAKVEsKKAEATRLEKIKTDREKAEEEAKRRAdaKLKEAVEKNVATSEQDKP-KRRAKRGVLG------EPATPDKK 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 817 RKRLKLGA---GEMRIHSPSDVLGKSLADLQKQFSEILARSQWEKEE-----AQVRERKLHEEMALQQEKLANGQEEFKQ 888
Cdd:NF033838 280 ENDAKSSDssvGEETLPSPSLKPEKKVAEAEKKVEEAKKKAKDQKEEdrrnyPTNTYKTLELEIAESDVKVKEAELELVK 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 889 acERALEARIKFDKRQHNARIQQLENEIHYLqenlksmEKIQglTDlqLQEADEEKERILAqlqelEKKKRREDARSQEQ 968
Cdd:NF033838 360 --EEAKEPRNEEKIKQAKAKVESKKAEATRL-------EKIK--TD--RKKAEEEAKRKAA-----EEDKVKEKPAEQPQ 421
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
631-881 |
2.67e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 631 QAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIvamDAENMRKELAELENALQEQHEVNASLQQAQGDLSAYETELET 710
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLK---QLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 711 QLKlkdaetsQLKQELENLVRRTQLEQSVLQTELEKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLK 790
Cdd:COG4942 98 ELE-------AQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 791 DFQSHLnhvvdglihpEEVAARVDELRKRLKLGAGEMRihspsdvlgKSLADLQKQFSEILARSQwEKEEAQVRERKLHE 870
Cdd:COG4942 171 AERAEL----------EALLAELEEERAALEALKAERQ---------KLLARLEKELAELAAELA-ELQQEAEELEALIA 230
|
250
....*....|.
gi 1958764994 871 EMALQQEKLAN 881
Cdd:COG4942 231 RLEAEAAAAAE 241
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
674-1048 |
2.85e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 674 RKELAELENALQEQHEVNASLQQAQGDLSAYETELETQLKLKDAetsQLKQELENLVRRTQLEQSvlQTELEKERQSLRD 753
Cdd:PRK04863 292 RRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD---HLNLVQTALRQQEKIERY--QADLEELEERLEE 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 754 AlgkAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHL----------NHVVDGL-----------IHPEEVAAR 812
Cdd:PRK04863 367 Q---NEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALdvqqtraiqyQQAVQALerakqlcglpdLTADNAEDW 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 813 VDELRKRLKLGAGEMRihspsdVLGKSLADLQKqfseilARSQWEKEEAQVreRKLHEEMALQQeklanGQEEFKQACER 892
Cdd:PRK04863 444 LEEFQAKEQEATEELL------SLEQKLSVAQA------AHSQFEQAYQLV--RKIAGEVSRSE-----AWDVARELLRR 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 893 ALEARIKFDK----RQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKK-----RREDA 963
Cdd:PRK04863 505 LREQRHLAEQlqqlRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVseareRRMAL 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 964 RSQEQFLGLDT-ELKSLKKA-VAASDKLAAAElTIAKEQLKSLHGtVMRINQERAEELQEAERSSREAMQAAKDLsraEA 1041
Cdd:PRK04863 585 RQQLEQLQARIqRLAARAPAwLAAQDALARLR-EQSGEEFEDSQD-VTEYMQQLLERERELTVERDELAARKQAL---DE 659
|
....*..
gi 1958764994 1042 EIELLQH 1048
Cdd:PRK04863 660 EIERLSQ 666
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
484-962 |
3.00e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.63 E-value: 3.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 484 KKISEAEKDLLLKQLSGRLRHLNKLRQEALDLEAQLEKQRKEIAEKHEEI-----------NSAQLATDLLDSKDPKQSH 552
Cdd:pfam05483 193 EKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVsllliqitekeNKMKDLTFLLEESRDKANQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 553 MKAQKRGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQ----------QLTDGQIAANEALKKDLEGVISGLQ 622
Cdd:pfam05483 273 LEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEdlqiatkticQLTEEKEAQMEELNKAKAAHSFVVT 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 623 EYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKELAELENALQEQHEVNASLQQAQgdls 702
Cdd:pfam05483 353 EFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFE---- 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 703 ayetELETQLKLKDAETSQLKQELENLVRRTQLEQSVLQTELEKERQSLRDAlgkAQSSEEKQQENSELRAQLKQLQDDN 782
Cdd:pfam05483 429 ----KIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDL---KTELEKEKLKNIELTAHCDKLLLEN 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 783 SLLKKQLKDFQSHLNHVVDGLIHPEEVAARVdeLRKRLKLGAGEMRIHSPSDVLGKSLADLQKQFSEILARSQWEKEEAQ 862
Cdd:pfam05483 502 KELTQEASDMTLELKKHQEDIINCKKQEERM--LKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIE 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 863 VRERKLHEEMALQQEKLAN--GQEEFKQACERALEARIKFDKRQHNARIQQL---ENEIHYLQENLKSM-EKIQGLTDLQ 936
Cdd:pfam05483 580 YEVLKKEKQMKILENKCNNlkKQIENKNKNIEELHQENKALKKKGSAENKQLnayEIKVNKLELELASAkQKFEEIIDNY 659
|
490 500
....*....|....*....|....*.
gi 1958764994 937 LQEADEEKERILAQLQELEKKKRRED 962
Cdd:pfam05483 660 QKEIEDKKISEEKLLEEVEKAKAIAD 685
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
438-700 |
3.26e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 41.90 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 438 QLEDTGKQIVAAQTRLSELHHEIE-----AAEQKvLRATQEfkQLEEAIR----QKKISEAEKDL------LLKQLSGRL 502
Cdd:pfam13779 457 ELARSDEALDEVADLLWELALRIEdgdlsDAERR-LRAAQE--RLSEALErgasDEEIAKLMQELrealddYMQALAEQA 533
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 503 RHLNKLRQEALDLEAQ------LEKQRKEIAEKHEEINSAQlATDLLDSKDPKQSHMKAQKRGKEQQLDI--MNKQytql 574
Cdd:pfam13779 534 QQNPQDLQQPDDPNAQemtqqdLQRMLDRIEELARSGRRAE-AQQMLSQLQQMLENLQAGQPQQQQQQGQseMQQA---- 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 575 esrLDEiLCRIATETEEIKDLEQQltDGQIAANEALKKDLEGVISGLQEYLGTIKGQ------AAQAQNECRKLQDEKET 648
Cdd:pfam13779 609 ---MDE-LGDLLREQQQLLDETFR--QLQQQGGQQQGQPGQQGQQGQGQQPGQGGQQpgaqmpPQGGAEALGDLAERQQA 682
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1958764994 649 LLQRLTEVKQEKDEleivaMDAENMRKELAElenALQEQHEVNASLQQAQGD 700
Cdd:pfam13779 683 LRRRLEELQDELKE-----LGGKEPGQALGD---AGRAMRDAEEALGQGDLA 726
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
435-1019 |
3.35e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.99 E-value: 3.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 435 PDVQLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDLLLKQLSGRLRHLNKLRQEALD 514
Cdd:COG5022 866 KETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEG 945
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 515 LEAQLEKQrKEIAEKHEEINSAQLATDLLDSKDPKQSHMKAQKRGKEQQLDIMNKQYTQLESRLDeilcRIATETEEIKD 594
Cdd:COG5022 946 PSIEYVKL-PELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYG----ALQESTKQLKE 1020
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 595 LEQQLT--------DGQIAANEALKKDLEGVISGLqeylgTIKGQAAQAQNECRKLQDEKETLLQRLTEV--KQEKDELE 664
Cdd:COG5022 1021 LPVEVAelqsaskiISSESTELSILKPLQKLKGLL-----LLENNQLQARYKALKLRRENSLLDDKQLYQleSTENLLKT 1095
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 665 IVAMDAENMRKELAELENALQ----------EQHEVNASLQQAQGDLSAYETELETQLKLKDAETSQLkqeleNLVRRTQ 734
Cdd:COG5022 1096 INVKDLEVTNRNLVKPANVLQfivaqmiklnLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEA-----NLEALPS 1170
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 735 LEQSVLQTELEKERQSLRDALGKAQSSEEKQQENsELRAQLKQLQDdNSLLKKQLKDFQSHLnhvvdglIHPEEVAARVD 814
Cdd:COG5022 1171 PPPFAALSEKRLYQSALYDEKSKLSSSEVNDLKN-ELIALFSKIFS-GWPRGDKLKKLISEG-------WVPTEYSTSLK 1241
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 815 ELRKRLKlgagemrihSPSDVLGKSLADLQKQFSEILARSQWEKEEAQVRERKLHEEMalQQEKLANGQEEFKQACERAL 894
Cdd:COG5022 1242 GFNNLNK---------KFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLL--QYINVGLFNALRTKASSLRW 1310
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 895 EARIKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLtdLQLQEADEEKERILAQLQELEKKKRREDARSQEQFLGLDT 974
Cdd:COG5022 1311 KSATEVNYNSEELDDWCREFEISDVDEELEELIQAVKV--LQLLKDDLNKLDELLDACYSLNPAEIQNLKSRYDPADKEN 1388
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1958764994 975 EL-KSLKKAVAAsdKLAAAELTIAKEQLKSLHGTVMRINQERAEEL 1019
Cdd:COG5022 1389 NLpKEILKKIEA--LLIKQELQLSLEGKDETEVHLSEIFSEEKSLI 1432
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
706-1054 |
3.41e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 706 TELETQLKLKDAETSQLKQELENLVRrtQLEQSVLQTELEKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNSLL 785
Cdd:pfam17380 285 SERQQQEKFEKMEQERLRQEKEEKAR--EVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKREL 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 786 KKqlkdfqshlnhvvdglIHPEEVAARVDELRKRLKLgagEMRIHSPSDVLGKSLADLQKQfseilarsqweKEEAQVRE 865
Cdd:pfam17380 363 ER----------------IRQEEIAMEISRMRELERL---QMERQQKNERVRQELEAARKV-----------KILEEERQ 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 866 RKLHEEMaLQQEKLANGQEEFKQACERALEArikfDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQL-------Q 938
Cdd:pfam17380 413 RKIQQQK-VEMEQIRAEQEEARQREVRRLEE----ERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELekekrdrK 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 939 EADEEKERILAQLQELEKKKRREDARSQEQflgLDTELKSLKKAVAASDKLAAAELTIAKEQlkslhgtvmrinqeraeE 1018
Cdd:pfam17380 488 RAEEQRRKILEKELEERKQAMIEEERKRKL---LEKEMEERQKAIYEEERRREAEEERRKQQ-----------------E 547
|
330 340 350
....*....|....*....|....*....|....*.
gi 1958764994 1019 LQEAERSSREAMQAAKDLSRAEAeiellqhLLRERE 1054
Cdd:pfam17380 548 MEERRRIQEQMRKATEERSRLEA-------MERERE 576
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
445-959 |
3.45e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.73 E-value: 3.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 445 QIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKiseAEKDLLLKQLSGRLRHLNKLRQEALDLEAQLEKQRK 524
Cdd:pfam10174 220 QLQPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLK---TNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQ 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 525 EIAEKHEEINSAQLATDLLDSK--DPKQsHMKAQKR---GKEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQQl 599
Cdd:pfam10174 297 ELSKKESELLALQTKLETLTNQnsDCKQ-HIEVLKEsltAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEE- 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 600 tdgqiaanealKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEivaMDAENMRKELAE 679
Cdd:pfam10174 375 -----------KSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQ---TDSSNTDTALTT 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 680 LENALQEQHEVNASLQQaqgdlsayETELETQLKLKdaETSQLKQELENLVRRTqleqSVLQTELEKERQSLRD----AL 755
Cdd:pfam10174 441 LEEALSEKERIIERLKE--------QREREDRERLE--ELESLKKENKDLKEKV----SALQPELTEKESSLIDlkehAS 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 756 GKAQSSEEKQQENSELRAQLKQLQDDNSLLKKQLKDfqshlnhvvdglIHPEEVAARVD-ELRKRLKLGAGEMRIHSpsD 834
Cdd:pfam10174 507 SLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKK------------AHNAEEAVRTNpEINDRIRLLEQEVARYK--E 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 835 VLGKSLADLQKqFSEILARSQWEK--------EEAQVRERKLHEEMALQQEKLANGQEEFKQACERALEARIKFDKRQHN 906
Cdd:pfam10174 573 ESGKAQAEVER-LLGILREVENEKndkdkkiaELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADN 651
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 1958764994 907 ARIQQLEneihylqENLKSMEKIQgltdlqlQEADEEKERILAQLQELEKKKR 959
Cdd:pfam10174 652 SQQLQLE-------ELMGALEKTR-------QELDATKARLSSTQQSLAEKDG 690
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
438-820 |
4.11e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 438 QLEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQ-KKISEAEKDLLLKQLSGRLRHLNKLRQEALDLE 516
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAlLEALEEELEALEEALAEAEAALRDLRRELRELE 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 517 AQLE--KQRK--------------------------------EIAEKHEE----INSA--QLATDLL------------- 543
Cdd:COG4913 426 AEIAslERRKsniparllalrdalaealgldeaelpfvgeliEVRPEEERwrgaIERVlgGFALTLLvppehyaaalrwv 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 544 --------------DSKDPKQSHMKAQKRGKEQQLDIMNKQYTQ-LESRLDEILCRIATET-EEIKDLEQQLT-DGQIAA 606
Cdd:COG4913 506 nrlhlrgrlvyervRTGLPDPERPRLDPDSLAGKLDFKPHPFRAwLEAELGRRFDYVCVDSpEELRRHPRAITrAGQVKG 585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 607 NEAL--KKDLEGVISGL------QEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENmRKELA 678
Cdd:COG4913 586 NGTRheKDDRRRIRSRYvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWD-EIDVA 664
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 679 ELENALQEQHEVNASLQQAQGDLsayeTELETQLKLKDAETSQLKQELENL-VRRTQLEQSvlQTELEKERQSLRDALGK 757
Cdd:COG4913 665 SAEREIAELEAELERLDASSDDL----AALEEQLEELEAELEELEEELDELkGEIGRLEKE--LEQAEEELDELQDRLEA 738
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958764994 758 AqSSEEKQQENSELRAQLKQLQDDNSlLKKQLKDFQSHLnhvvdglihpEEVAARVDELRKRL 820
Cdd:COG4913 739 A-EDLARLELRALLEERFAAALGDAV-ERELRENLEERI----------DALRARLNRAEEEL 789
|
|
| MscS_porin |
pfam12795 |
Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part ... |
584-787 |
4.11e-03 |
|
Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this MscS_porin is towards the N-terminal of the molecules. The high concentration of negative charges at the extracellular entrance of the pore helps select the cations for efflux.
Pssm-ID: 432790 [Multi-domain] Cd Length: 238 Bit Score: 40.36 E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 584 RIATETEEIKDLEQQLTDGQIAANEALKKDLEGV-ISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDE 662
Cdd:pfam12795 45 ALDDAPAELRELRQELAALQAKAEAAPKEILASLsLEELEQRLLQTSAQLQELQNQLAQLNSQLIELQTRPERAQQQLSE 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 663 LeivamdaenmRKELAELENALQEQHEVNASLQQAQgdlsayETELETQLKLKDAETSQLKQELENLVRRTQLEQSVL-- 740
Cdd:pfam12795 125 A----------RQRLQQIRNRLNGPAPPGEPLSEAQ------RWALQAELAALKAQIDMLEQELLSNNNRQDLLKARRdl 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958764994 741 ----QTELEKERQSLRDAL-GKAQSSEEKQQENSELRAQlkQLQDDNSLLKK 787
Cdd:pfam12795 189 ltlrIQRLEQQLQALQELLnEKRLQEAEQAVAQTEQLAE--EAAGDHPLVQQ 238
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
636-754 |
4.85e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.09 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 636 QNECRKLQDEKETLLQRLTEVKQEKDELEIvamDAENMRKELAELEnALQEQHEvnaslqqaqGDLSAYETELEtQLKLK 715
Cdd:PRK11448 141 ENLLHALQQEVLTLKQQLELQAREKAQSQA---LAEAQQQELVALE-GLAAELE---------EKQQELEAQLE-QLQEK 206
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1958764994 716 DAETSQlkQELENLVRRT-QLEQSVLQTELEKER---QSLRDA 754
Cdd:PRK11448 207 AAETSQ--ERKQKRKEITdQAAKRLELSEEETRIlidQQLRKA 247
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
84-181 |
5.22e-03 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 40.42 E-value: 5.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 84 TEALIKKLTKQDNLALVKSLNLSLSKDGGKKFRyiENLEKCVKLEVLNLSYNLI--AKIEKVDKLLR-----LRELNLSY 156
Cdd:cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALA--ETLASLKSLEVLNLGDNNLtdAGAAALASALLspnisLLTLSLSC 259
|
90 100 110
....*....|....*....|....*....|.
gi 1958764994 157 NKI------SKIEGLENMCNLQKLNLAGNEI 181
Cdd:cd00116 260 NDItddgakDLAEVLAEKESLLELDLRGNKF 290
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
612-818 |
6.46e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.77 E-value: 6.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 612 KDLEGVISGLQEYLGT----IKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIvamDAENMRKELAELENAL--- 684
Cdd:PHA02562 184 QTLDMKIDHIQQQIKTynknIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTD---ELLNLVMDIEDPSAALnkl 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 685 -QEQHEVNASLQQAQGDLSAYETELETQlklkdAETSQLKQElENLVRRTQLEQSVLQTELEKerqsLRDALGKAQSSEE 763
Cdd:PHA02562 261 nTAAAKIKSKIEQFQKVIKMYEKGGVCP-----TCTQQISEG-PDRITKIKDKLKELQHSLEK----LDTAIDELEEIMD 330
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 764 KQQENS----ELRAQLKQLQDDNSLLKKQLKDFQSHL-NHVVDGLIHPEEVAARVDELRK 818
Cdd:PHA02562 331 EFNEQSkkllELKNKISTNKQSLITLVDKAKKVKAAIeELQAEFVDNAEELAKLQDELDK 390
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
908-1062 |
7.15e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 40.00 E-value: 7.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 908 RIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKkkrredarsqeqflgldtELKSLKKAVAASD 987
Cdd:smart00787 138 RMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEE------------------ELRQLKQLEDELE 199
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958764994 988 KLAAAELTIAKEQLKSLHGTVMRINQERAEELQEAERSSREAMQAAKDLSRAEAEIELLQHLLREREGQFRDEME 1062
Cdd:smart00787 200 DCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIE 274
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
605-812 |
7.49e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 7.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 605 AANEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKELAELENAL 684
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 685 QE-----QHEVNASLQQAQ--GDLSAYE--------TELETQLKLKDAETSQLKQELENLvRRTQLEQSVLQTELEKERQ 749
Cdd:COG4942 96 RAeleaqKEELAELLRALYrlGRQPPLAlllspedfLDAVRRLQYLKYLAPARREQAEEL-RADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958764994 750 SLRDALGKAQSSEEK-QQENSELRAQLKQLQDDNSLLKKQLKDFQS---HLNHVVDGLIHPEEVAAR 812
Cdd:COG4942 175 ELEALLAELEEERAAlEALKAERQKLLARLEKELAELAAELAELQQeaeELEALIARLEAEAAAAAE 241
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
494-679 |
7.71e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 7.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 494 LLKQLSGRLRHLNKLRQEALDLEAQLEKQRKEIAEKHEEINSAQLATDLLdskdpkqshmKAQKRGKEQQLDIMNKQYTQ 573
Cdd:COG1579 8 ALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDL----------EKEIKRLELEIEEVEARIKK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 574 LESRLDEIlcriaTETEEIKDLEQQltdgqIAANEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRL 653
Cdd:COG1579 78 YEEQLGNV-----RNNKEYEALQKE-----IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAEL 147
|
170 180
....*....|....*....|....*..
gi 1958764994 654 TEVKQE-KDELEIVAMDAENMRKELAE 679
Cdd:COG1579 148 DEELAElEAELEELEAEREELAAKIPP 174
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
450-779 |
8.13e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.26 E-value: 8.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 450 QTRLSELHHEIEAAEQKVLRATQEFKQLEEAIrqkkiseaekDLLLKQLSGRLRHLNKLRQEALDLEAQLEKQRKEIAEK 529
Cdd:pfam07888 40 LQERAELLQAQEAANRQREKEKERYKRDREQW----------ERQRRELESRVAELKEELRQSREKHEELEEKYKELSAS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 530 HEEInsAQLATDLLDSKDPKQshmkAQKRGKEQQLDIMNKQYTQLESRLDEIlcriateTEEIKDLEQQLTDGQiAANEA 609
Cdd:pfam07888 110 SEEL--SEEKDALLAQRAAHE----ARIRELEEDIKTLTQRVLERETELERM-------KERAKKAGAQRKEEE-AERKQ 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 610 LKKDL---EGVISGLQEYLGTIKGQAAQAQNECRKLQDEKETLLQRLTEVKQEKDELEIVAMDAENMRKELA-------- 678
Cdd:pfam07888 176 LQAKLqqtEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNaserkveg 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 679 ---ELENALQEQHEVNASLQQAQgdLSAYETEL---ETQLKLKDaETSQLKQELENLVRRTQLEQSVLQT---------- 742
Cdd:pfam07888 256 lgeELSSMAAQRDRTQAELHQAR--LQAAQLTLqlaDASLALRE-GRARWAQERETLQQSAEADKDRIEKlsaelqrlee 332
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1958764994 743 ---ELEKERQSLRDALGKAQSS-----EEKQQENSELRAQLKQLQ 779
Cdd:pfam07888 333 rlqEERMEREKLEVELGREKDCnrvqlSESRRELQELKASLRVAQ 377
|
|
| CAGE1 |
pfam15066 |
Cancer-associated gene protein 1 family; CAGE-1 is a family of proteins overexpressed in ... |
897-1054 |
8.18e-03 |
|
Cancer-associated gene protein 1 family; CAGE-1 is a family of proteins overexpressed in tumour tissues compared with surrounding tissues. CAGE-1 gene showed testis-specific expression among normal tissues and displayed wide expression in a variety of cancer cell lines and cancer tissues. CAGE-1 is predominantly expressed during post-meiotic stages. It localizes to the acrosomal matrix and acrosomal granule showing it to be a component of the acrosome of mammalian spermatids and spermatozoa.
Pssm-ID: 464481 Cd Length: 528 Bit Score: 40.20 E-value: 8.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 897 RIKFDKRQHNARIQQLENEIHYLQENLKSME----KIQGLTDL------QLQEADEEKERILAQLQELEKKkrredarsq 966
Cdd:pfam15066 322 KLKHTNRKQQMQIQDLQCSNLYLEKKVKELQmkitKQQVFVDIinklkeNVEELIEDKYNVILEKNDINKT--------- 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 967 eqflgldteLKSLKKAVAASDKlAAAELTIAKE----QLKSLHGTVMRINQERAEELQEAERSSREAMQAAKDLSRAEAE 1042
Cdd:pfam15066 393 ---------LQNLQEILANTQK-HLQESRKEKEtlqlELKKIKVNYVHLQERYITEMQQKNKSVSQCLEMDKTLSKKEEE 462
|
170
....*....|..
gi 1958764994 1043 IELLQHLLRERE 1054
Cdd:pfam15066 463 VERLQQLKGELE 474
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
439-962 |
8.30e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 40.55 E-value: 8.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 439 LEDTGKQIVAAQTRLSELHHEIEAAEQKVLRATQEFKQLEEAIRQKKISEAEKDLLLKQLSGRLRHLNKLRQEaldlEAQ 518
Cdd:PRK10246 306 LAHTRQQIEEVNTRLQSTMALRARIRHHAAKQSAELQAQQQSLNTWLAEHDRFRQWNNELAGWRAQFSQQTSD----REQ 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 519 LEKQRKEIAEKHEEINSAQLATDLLDSKDPKQSHMK-AQKRGKEQQLDIMNKQYTQLESRLDEILCRIATETEEIKDLEQ 597
Cdd:PRK10246 382 LRQWQQQLTHAEQKLNALPAITLTLTADEVAAALAQhAEQRPLRQRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNA 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 598 QLTDGQ---------------IAANEALKKDLEGVISGLQE---------------------YLGTIKGQAAQAQNECRK 641
Cdd:PRK10246 462 ALNEMRqrykektqqladvktICEQEARIKDLEAQRAQLQAgqpcplcgstshpaveayqalEPGVNQSRLDALEKEVKK 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 642 LQDEKETLLQRL----TEVKQEKDELEIVAMDAENMRKE----LAELENALQEQHEVNASLQQA-----QGDLSAYETEL 708
Cdd:PRK10246 542 LGEEGAALRGQLdaltKQLQRDESEAQSLRQEEQALTQQwqavCASLNITLQPQDDIQPWLDAQeeherQLRLLSQRHEL 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 709 ETQLKLKDAETSQLKQELENlvRRTQLEQSVLQTEL-----EKERQSLRDALGKAQSSEEKQQENSELRAQLKQLQDDNS 783
Cdd:PRK10246 622 QGQIAAHNQQIIQYQQQIEQ--RQQQLLTALAGYALtlpqeDEEASWLATRQQEAQSWQQRQNELTALQNRIQQLTPLLE 699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 784 LLKKQLKDFQSHLNHVVDGL--IHPEEVA--ARVDELRKRLKLGAgemrihspsdvlgKSLADLQKQFSEILARSQWEKE 859
Cdd:PRK10246 700 TLPQSDDLPHSEETVALDNWrqVHEQCLSlhSQLQTLQQQDVLEA-------------QRLQKAQAQFDTALQASVFDDQ 766
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 860 EA------------QVRERKLHEEMALQQEKLANGQEEfkQACERALEARIKFdkRQHNARIQQLENEIHYLQENLKSME 927
Cdd:PRK10246 767 QAflaalldeetltQLEQLKQNLENQRQQAQTLVTQTA--QALAQHQQHRPDG--LDLTVTVEQIQQELAQLAQQLRENT 842
|
570 580 590
....*....|....*....|....*....|....*
gi 1958764994 928 KIQGLTDLQLQEADEEKERILAQLQELEKKKRRED 962
Cdd:PRK10246 843 TRQGEIRQQLKQDADNRQQQQALMQQIAQATQQVE 877
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
841-958 |
8.69e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.20 E-value: 8.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 841 ADLQKQfsEILARSQWEKEEAQVRE-RKLHEEMALQQEKLangQEEFKQACERAlearikfdKRQHNARIQQLENEIHYL 919
Cdd:PRK00409 523 ASLEEL--ERELEQKAEEAEALLKEaEKLKEELEEKKEKL---QEEEDKLLEEA--------EKEAQQAIKEAKKEADEI 589
|
90 100 110
....*....|....*....|....*....|....*....
gi 1958764994 920 QENLKSMEKiQGLTDLQLQEADEEKERILAQLQELEKKK 958
Cdd:PRK00409 590 IKELRQLQK-GGYASVKAHELIEARKRLNKANEKKEKKK 627
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
584-958 |
9.06e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 9.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 584 RIATETEEIKDLEQQLTD--GQIAANEALKKDLEGVISGLQEYLGTIKGQAAQAQNECRKLQDEK----ETLLQRLTEVK 657
Cdd:TIGR04523 69 KINNSNNKIKILEQQIKDlnDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKkenkKNIDKFLTEIK 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 658 QEKDELEIVAMDAENMRKELAELENAL----QEQHEVNASLQQAQGDLSAYETELeTQLKLKDAETSQLKQELENLVRrt 733
Cdd:TIGR04523 149 KKEKELEKLNNKYNDLKKQKEELENELnlleKEKLNIQKNIDKIKNKLLKLELLL-SNLKKKIQKNKSLESQISELKK-- 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 734 qlEQSVLQTELEKERQSLrdalgkaqssEEKQQENSELRAQLKQLQDDNSLLKKQLKDFQSHLnhvvdglihpEEVAARV 813
Cdd:TIGR04523 226 --QNNQLKDNIEKKQQEI----------NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKEL----------EQNNKKI 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 814 DELRKRLKLGAGEMrihspSDVLGKSLADLQKQFSEILARSQWEKEEAQVRERK-------LHEEMAlQQEKLANGQEEF 886
Cdd:TIGR04523 284 KELEKQLNQLKSEI-----SDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQnnkiisqLNEQIS-QLKKELTNSESE 357
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958764994 887 KQACERALEAR------IKFDKRQHNARIQQLENEIHYLQENLKSMEKIQGLTDLQLQEADEEKERILAQLQELEKKK 958
Cdd:TIGR04523 358 NSEKQRELEEKqneiekLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETI 435
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
650-942 |
9.97e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.28 E-value: 9.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 650 LQRLTEVKQEKDELEIVAMDAENMRKELAELENALQEQHEVNASLQQAQGDLSAYETELEtqlKLKDAETSQLKQELENL 729
Cdd:PRK11281 45 LDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELE---ALKDDNDEETRETLSTL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 730 VRRtQLEQsvLQTELEKERQSLRDALGKAQSSEEKQQENSElRAQlKQLqDDNSllkkqlkdfqshlnhvvdglihpeev 809
Cdd:PRK11281 122 SLR-QLES--RLAQTLDQLQNAQNDLAEYNSQLVSLQTQPE-RAQ-AAL-YANS-------------------------- 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958764994 810 aARVDELRKRLKLGAGEMRIHSPSdvlgksladlqkqfseilARSQWEKEEAQvrerkLHEEMALQQEKLANGqeefkqa 889
Cdd:PRK11281 170 -QRLQQIRNLLKGGKVGGKALRPS------------------QRVLLQAEQAL-----LNAQNDLQRKSLEGN------- 218
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958764994 890 ceralEARIKFDKRQH---NARIQQLENEIHYLQE-----NLKSMEKiqglTDLQLQEADE 942
Cdd:PRK11281 219 -----TQLQDLLQKQRdylTARIQRLEHQLQLLQEainskRLTLSEK----TVQEAQSQDE 270
|
|
| |
